Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05515.t1 | RHN52866.1 | 97.8 | 639 | 14 | 0 | 1 | 639 | 54 | 692 | 0.00E+00 | 1201.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05515.t1 | Q94LW6 | 61.7 | 622 | 233 | 2 | 11 | 632 | 16 | 632 | 3.4e-216 | 752.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05515.t1 | G7KNG9 | 97.8 | 639 | 14 | 0 | 1 | 639 | 1 | 639 | 0.0e+00 | 1201.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05515 | MS.gene49944 | 0.88225 | 1.22E-70 | -1.69E-46 |
MS.gene05515 | MS.gene61430 | 0.874241 | 7.88E-68 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene05515 | MS.gene52620 | PPI |
MS.gene05515 | MS.gene035629 | PPI |
MS.gene005189 | MS.gene05515 | PPI |
MS.gene05515 | MS.gene064542 | PPI |
MS.gene05515 | MS.gene012490 | PPI |
MS.gene05515 | MS.gene91547 | PPI |
MS.gene05515 | MS.gene73119 | PPI |
MS.gene44056 | MS.gene05515 | PPI |
MS.gene035805 | MS.gene05515 | PPI |
MS.gene05515 | MS.gene40741 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05515.t1 | MTR_6g086170 | 97.809 | 639 | 14 | 0 | 1 | 639 | 1 | 639 | 0.0 | 1281 |
MS.gene05515.t1 | MTR_7g095430 | 52.426 | 639 | 297 | 3 | 3 | 637 | 13 | 648 | 0.0 | 689 |
MS.gene05515.t1 | MTR_1g071530 | 51.881 | 638 | 300 | 4 | 3 | 636 | 15 | 649 | 0.0 | 680 |
MS.gene05515.t1 | MTR_7g095430 | 55.083 | 541 | 240 | 2 | 3 | 543 | 13 | 550 | 0.0 | 624 |
MS.gene05515.t1 | MTR_4g084640 | 48.701 | 616 | 313 | 2 | 21 | 634 | 33 | 647 | 0.0 | 619 |
MS.gene05515.t1 | MTR_2g102243 | 47.833 | 623 | 319 | 3 | 3 | 620 | 15 | 636 | 0.0 | 612 |
MS.gene05515.t1 | MTR_4g084620 | 46.372 | 634 | 334 | 4 | 6 | 636 | 16 | 646 | 0.0 | 603 |
MS.gene05515.t1 | MTR_4g011970 | 47.334 | 619 | 319 | 3 | 6 | 620 | 28 | 643 | 0.0 | 595 |
MS.gene05515.t1 | MTR_5g061880 | 44.745 | 628 | 341 | 3 | 5 | 627 | 25 | 651 | 0.0 | 584 |
MS.gene05515.t1 | MTR_3g073780 | 44.320 | 625 | 341 | 4 | 5 | 623 | 28 | 651 | 0.0 | 563 |
MS.gene05515.t1 | MTR_2g102243 | 47.636 | 571 | 293 | 3 | 3 | 568 | 15 | 584 | 0.0 | 561 |
MS.gene05515.t1 | MTR_2g008470 | 45.469 | 618 | 330 | 4 | 8 | 620 | 52 | 667 | 0.0 | 553 |
MS.gene05515.t1 | MTR_2g008470 | 45.469 | 618 | 330 | 4 | 8 | 620 | 33 | 648 | 0.0 | 553 |
MS.gene05515.t1 | MTR_3g073780 | 45.357 | 560 | 302 | 3 | 5 | 561 | 28 | 586 | 3.49e-179 | 521 |
MS.gene05515.t1 | MTR_3g073780 | 46.341 | 533 | 282 | 3 | 5 | 534 | 28 | 559 | 3.08e-174 | 507 |
MS.gene05515.t1 | MTR_5g061860 | 42.904 | 613 | 338 | 5 | 23 | 623 | 34 | 646 | 8.78e-173 | 507 |
MS.gene05515.t1 | MTR_3g087740 | 42.978 | 591 | 327 | 5 | 42 | 624 | 62 | 650 | 9.63e-168 | 494 |
MS.gene05515.t1 | MTR_3g073730 | 42.114 | 577 | 320 | 6 | 60 | 623 | 77 | 652 | 8.88e-158 | 469 |
MS.gene05515.t1 | MTR_5g061860 | 44.146 | 521 | 282 | 4 | 23 | 534 | 34 | 554 | 8.71e-152 | 450 |
MS.gene05515.t1 | MTR_3g087730 | 35.333 | 600 | 371 | 8 | 42 | 624 | 57 | 656 | 7.90e-130 | 397 |
MS.gene05515.t1 | MTR_7g022870 | 35.533 | 591 | 367 | 9 | 52 | 636 | 67 | 649 | 4.09e-120 | 373 |
MS.gene05515.t1 | MTR_7g022870 | 36.346 | 509 | 313 | 8 | 52 | 557 | 67 | 567 | 3.29e-104 | 328 |
MS.gene05515.t1 | MTR_6g024420 | 31.690 | 142 | 78 | 4 | 201 | 342 | 42 | 164 | 1.40e-15 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05515.t1 | AT5G19600 | 61.538 | 624 | 235 | 2 | 10 | 633 | 15 | 633 | 0.0 | 789 |
MS.gene05515.t1 | AT3G51895 | 54.574 | 634 | 280 | 4 | 5 | 631 | 13 | 645 | 0.0 | 735 |
MS.gene05515.t1 | AT3G51895 | 54.574 | 634 | 280 | 4 | 5 | 631 | 58 | 690 | 0.0 | 735 |
MS.gene05515.t1 | AT4G02700 | 50.470 | 638 | 312 | 2 | 1 | 634 | 1 | 638 | 0.0 | 653 |
MS.gene05515.t1 | AT3G15990 | 48.470 | 621 | 313 | 3 | 4 | 620 | 23 | 640 | 0.0 | 614 |
MS.gene05515.t1 | AT1G23090 | 47.742 | 620 | 316 | 4 | 6 | 620 | 2 | 618 | 0.0 | 595 |
MS.gene05515.t1 | AT4G08620 | 46.569 | 612 | 321 | 3 | 17 | 623 | 30 | 640 | 0.0 | 572 |
MS.gene05515.t1 | AT1G22150 | 44.800 | 625 | 331 | 4 | 12 | 627 | 33 | 652 | 0.0 | 544 |
MS.gene05515.t1 | AT1G22150 | 44.800 | 625 | 331 | 4 | 12 | 627 | 33 | 652 | 0.0 | 544 |
MS.gene05515.t1 | AT1G22150 | 44.800 | 625 | 331 | 4 | 12 | 627 | 33 | 652 | 0.0 | 544 |
MS.gene05515.t1 | AT1G78000 | 46.090 | 601 | 318 | 3 | 28 | 623 | 46 | 645 | 0.0 | 536 |
MS.gene05515.t1 | AT1G78000 | 46.090 | 601 | 318 | 3 | 28 | 623 | 46 | 645 | 0.0 | 536 |
MS.gene05515.t1 | AT1G78000 | 46.090 | 601 | 318 | 3 | 28 | 623 | 46 | 645 | 0.0 | 536 |
MS.gene05515.t1 | AT1G78000 | 46.359 | 563 | 296 | 3 | 28 | 585 | 46 | 607 | 2.59e-173 | 507 |
MS.gene05515.t1 | AT1G22150 | 46.950 | 541 | 281 | 3 | 12 | 551 | 33 | 568 | 8.89e-173 | 505 |
MS.gene05515.t1 | AT5G10180 | 42.978 | 591 | 326 | 5 | 42 | 623 | 84 | 672 | 3.97e-168 | 496 |
MS.gene05515.t1 | AT1G78000 | 48.162 | 517 | 266 | 2 | 28 | 543 | 46 | 561 | 1.15e-167 | 492 |
MS.gene05515.t1 | AT1G77990 | 40.806 | 571 | 327 | 4 | 60 | 620 | 94 | 663 | 1.08e-157 | 469 |
MS.gene05515.t1 | AT1G23090 | 45.625 | 480 | 256 | 2 | 146 | 620 | 7 | 486 | 2.67e-148 | 439 |
MS.gene05515.t1 | AT1G23090 | 45.625 | 480 | 256 | 2 | 146 | 620 | 7 | 486 | 2.67e-148 | 439 |
MS.gene05515.t1 | AT1G23090 | 45.625 | 480 | 256 | 2 | 146 | 620 | 7 | 486 | 2.67e-148 | 439 |
MS.gene05515.t1 | AT1G78000 | 48.352 | 455 | 233 | 2 | 28 | 481 | 46 | 499 | 3.17e-142 | 424 |
MS.gene05515.t1 | AT1G78000 | 45.647 | 425 | 230 | 1 | 120 | 543 | 2 | 426 | 2.02e-127 | 384 |
MS.gene05515.t1 | AT3G12520 | 35.385 | 585 | 362 | 10 | 60 | 638 | 52 | 626 | 9.93e-115 | 358 |
MS.gene05515.t1 | AT3G12520 | 35.385 | 585 | 362 | 10 | 60 | 638 | 68 | 642 | 1.99e-114 | 357 |
MS.gene05515.t1 | AT5G13550 | 33.926 | 619 | 387 | 12 | 29 | 637 | 47 | 653 | 3.77e-114 | 357 |
MS.gene05515.t1 | AT3G12520 | 35.060 | 502 | 317 | 7 | 34 | 534 | 42 | 535 | 4.96e-96 | 305 |
Find 118 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTACCATCACTGGCTTTA+TGG | 0.091737 | 6.2:-84467889 | MS.gene05515:CDS |
AACTGCTATTGAAGGATTAT+TGG | 0.199180 | 6.2:-84461732 | MS.gene05515:CDS |
CTTGGAAAGTTACCTGATTC+TGG | 0.227842 | 6.2:-84462463 | MS.gene05515:CDS |
GCCAATATCCATGCTTAAAA+AGG | 0.236226 | 6.2:+84462919 | None:intergenic |
CCAACTACTACACATGTTAT+TGG | 0.237105 | 6.2:+84464763 | None:intergenic |
GGAATCGTTCTATCTAAATT+TGG | 0.237542 | 6.2:-84461348 | MS.gene05515:CDS |
CATTTGTAGGCTTGGGATAT+TGG | 0.255298 | 6.2:-84467928 | MS.gene05515:intron |
TACAATGTTGGTTCTGTTAT+AGG | 0.258874 | 6.2:+84468681 | None:intergenic |
TGATCCTTTCAGGCAAATTA+TGG | 0.267858 | 6.2:-84469728 | MS.gene05515:CDS |
AATAATCTCAAAGTATAATT+TGG | 0.268753 | 6.2:+84469637 | None:intergenic |
TTTGGCCTCATGAACTTGTT+TGG | 0.279571 | 6.2:-84464292 | MS.gene05515:CDS |
TTTGTGACAAAATTGAAATC+TGG | 0.281986 | 6.2:-84469775 | MS.gene05515:CDS |
ATCATTGTATCTGCCATGTT+AGG | 0.283405 | 6.2:-84463028 | MS.gene05515:CDS |
TCTACCATCACTGGCTTTAT+GGG | 0.290527 | 6.2:-84467888 | MS.gene05515:CDS |
ATTGGAAACAAAGAAAATAT+TGG | 0.294585 | 6.2:-84461714 | MS.gene05515:CDS |
CACTGCTATAACGTTGGTTT+TGG | 0.297397 | 6.2:+84467800 | None:intergenic |
AGGAGGAAGATTGGCAAGTT+TGG | 0.298917 | 6.2:+84469549 | None:intergenic |
AAACCCTAGGTTGGAGGTTA+TGG | 0.301154 | 6.2:-84461411 | MS.gene05515:CDS |
AAATCTCGTAGGTTGATTAA+AGG | 0.311993 | 6.2:-84469694 | MS.gene05515:CDS |
ATTGGAAATGAAAGCAATTC+AGG | 0.312773 | 6.2:-84461696 | MS.gene05515:intron |
GTGCAAGAGATTCATCATAA+TGG | 0.322663 | 6.2:-84469823 | MS.gene05515:CDS |
TGCAAGAGATTCATCATAAT+GGG | 0.323918 | 6.2:-84469822 | MS.gene05515:CDS |
ACAATGTTGGTTCTGTTATA+GGG | 0.326400 | 6.2:+84468682 | None:intergenic |
AATCTCGTAGGTTGATTAAA+GGG | 0.331148 | 6.2:-84469693 | MS.gene05515:CDS |
GCCAATCTTCCTCCTCTCAT+TGG | 0.336096 | 6.2:-84469541 | MS.gene05515:CDS |
AGATGGGAAACTACAGTTCT+TGG | 0.350067 | 6.2:-84465479 | MS.gene05515:CDS |
TATCTGCATGAGTGCATTCT+TGG | 0.353100 | 6.2:-84462948 | MS.gene05515:CDS |
GTCTTCATTATTGTTTGGCT+TGG | 0.354659 | 6.2:+84461286 | None:intergenic |
GTAGAATTTGAAAAGTAAAT+AGG | 0.362141 | 6.2:+84462367 | None:intergenic |
TTTGGTAACCACTCAAAGAT+TGG | 0.364192 | 6.2:+84469655 | None:intergenic |
AAAAGTGAACAAATCAGTTC+TGG | 0.368002 | 6.2:-84462206 | MS.gene05515:CDS |
AACAAAGAGATGATAGCTTT+TGG | 0.372125 | 6.2:-84464310 | MS.gene05515:CDS |
TCTAATGCTTCAACAATTCC+AGG | 0.372816 | 6.2:-84462415 | MS.gene05515:CDS |
GTTGGACTAGGTTTACTTAG+AGG | 0.389651 | 6.2:-84462520 | MS.gene05515:CDS |
TAATTAATTACCTTTCTTTG+AGG | 0.391511 | 6.2:+84462341 | None:intergenic |
ACAGTGTCTTCATTATTGTT+TGG | 0.392452 | 6.2:+84461281 | None:intergenic |
TTCACAGCCGTCTTGGAAAA+TGG | 0.392750 | 6.2:+84463169 | None:intergenic |
TGTGGTTCAAGCAGTAATAA+TGG | 0.397620 | 6.2:-84463113 | MS.gene05515:CDS |
GTCAGATATTGAATTGATAT+AGG | 0.399696 | 6.2:+84464548 | None:intergenic |
TTGTGACAAAATTGAAATCT+GGG | 0.401519 | 6.2:-84469774 | MS.gene05515:CDS |
ATTTGCCTGAAAGGATCATC+AGG | 0.421476 | 6.2:+84469733 | None:intergenic |
ATTGACACAACTGCTATTGA+AGG | 0.423273 | 6.2:-84461740 | MS.gene05515:CDS |
GATACTAACCTCATGTCTAT+TGG | 0.426004 | 6.2:+84467761 | None:intergenic |
TCATTGTATCTGCCATGTTA+GGG | 0.442300 | 6.2:-84463027 | MS.gene05515:CDS |
GCCAATGAGAGGAGGAAGAT+TGG | 0.452640 | 6.2:+84469540 | None:intergenic |
TCTCATCCTCCAACAATTCA+AGG | 0.453577 | 6.2:-84467850 | MS.gene05515:CDS |
TCTCTGTATAAACCAGAATC+AGG | 0.455645 | 6.2:+84462451 | None:intergenic |
TAAAGCCAGTGATGGTAGAA+TGG | 0.458267 | 6.2:+84467892 | None:intergenic |
ATCTGCATGAGTGCATTCTT+GGG | 0.460576 | 6.2:-84462947 | MS.gene05515:CDS |
ACAAATCAGTTCTGGAGATA+TGG | 0.462184 | 6.2:-84462198 | MS.gene05515:CDS |
TCTTCCATAATTTGCCTGAA+AGG | 0.471928 | 6.2:+84469724 | None:intergenic |
CTTGCAATTTACAAGGCACT+TGG | 0.472344 | 6.2:-84465438 | MS.gene05515:intron |
ACTTGTATAATTAGAACTCC+TGG | 0.472930 | 6.2:+84462397 | None:intergenic |
AGTGGTGTGTTGCTAAATAA+TGG | 0.482061 | 6.2:+84463067 | None:intergenic |
TTCACAACAACCTTTATCAC+TGG | 0.484749 | 6.2:-84468645 | MS.gene05515:CDS |
TTTCAGGCAAATTATGGAAG+AGG | 0.489916 | 6.2:-84469722 | MS.gene05515:CDS |
GGAGTTCTAATTATACAAGT+TGG | 0.491780 | 6.2:-84462394 | MS.gene05515:CDS |
TTTGCAATCTAGGTTGGACT+AGG | 0.497605 | 6.2:-84462532 | MS.gene05515:intron |
AAAGCCAGTGATGGTAGAAT+GGG | 0.500955 | 6.2:+84467893 | None:intergenic |
CTCTAGCACTGCTATAACGT+TGG | 0.504485 | 6.2:+84467794 | None:intergenic |
AGACCACCAGCATGCAAGCT+TGG | 0.506725 | 6.2:-84462481 | MS.gene05515:CDS |
GTTCTAGGCACATGGCAGTT+GGG | 0.507091 | 6.2:-84468758 | MS.gene05515:CDS |
ACTTATCAACTTTAAAGAGA+TGG | 0.509202 | 6.2:+84462981 | None:intergenic |
CTTAGTAAACCCTAGGTTGG+AGG | 0.511054 | 6.2:-84461417 | MS.gene05515:CDS |
ATTCTACATACCTCAAAGAA+AGG | 0.514031 | 6.2:-84462351 | MS.gene05515:intron |
ATCTCTTTGTTCCCATCATG+AGG | 0.518610 | 6.2:+84464322 | None:intergenic |
AGTTCTAGGCACATGGCAGT+TGG | 0.522267 | 6.2:-84468759 | MS.gene05515:CDS |
CATGAGTGCATTCTTGGGTG+TGG | 0.523931 | 6.2:-84462942 | MS.gene05515:CDS |
AACTTTCCAAGCTTGCATGC+TGG | 0.527389 | 6.2:+84462475 | None:intergenic |
AAATTTGGAAGATGCAGTGT+TGG | 0.527724 | 6.2:-84461333 | MS.gene05515:CDS |
TTATCAACAGTAATGAAAGC+TGG | 0.530131 | 6.2:-84464509 | MS.gene05515:CDS |
AAATACCCTTGAATTGTTGG+AGG | 0.536645 | 6.2:+84467844 | None:intergenic |
TTTCCAAGCTTGCATGCTGG+TGG | 0.538810 | 6.2:+84462478 | None:intergenic |
CTCCAACCTAGGGTTTACTA+AGG | 0.544948 | 6.2:+84461418 | None:intergenic |
ACTGCTAATACACCTCATGA+TGG | 0.545862 | 6.2:-84464334 | MS.gene05515:CDS |
CTTGTGAAAGGTACACAACA+TGG | 0.546175 | 6.2:-84464724 | MS.gene05515:CDS |
TTCTCCATAACCTCCAACCT+AGG | 0.548321 | 6.2:+84461407 | None:intergenic |
GGCCTTAGTAAACCCTAGGT+TGG | 0.549563 | 6.2:-84461420 | MS.gene05515:CDS |
ATAACTAATGCCTTGAGGAA+TGG | 0.551773 | 6.2:+84469573 | None:intergenic |
ATAACATGTGTAGTAGTTGG+TGG | 0.555611 | 6.2:-84464760 | MS.gene05515:CDS |
CATGTTGTGTACCTTTCACA+AGG | 0.555977 | 6.2:+84464725 | None:intergenic |
ATCAAGTGAAGATACAATGT+TGG | 0.557565 | 6.2:+84468669 | None:intergenic |
TCTCCATAACCTCCAACCTA+GGG | 0.557732 | 6.2:+84461408 | None:intergenic |
CCAATAACATGTGTAGTAGT+TGG | 0.558610 | 6.2:-84464763 | MS.gene05515:CDS |
ACCATCACTGGCTTTATGGG+AGG | 0.561154 | 6.2:-84467885 | MS.gene05515:CDS |
GCTAGTCTTGCCATTCCTCA+AGG | 0.563153 | 6.2:-84469583 | MS.gene05515:CDS |
ATTGTAATTCACAGCCGTCT+TGG | 0.564494 | 6.2:+84463162 | None:intergenic |
TGATAAATATCTTCTATCAA+AGG | 0.566348 | 6.2:+84464526 | None:intergenic |
CTGCTAATACACCTCATGAT+GGG | 0.571207 | 6.2:-84464333 | MS.gene05515:CDS |
TTGTAAATTGCAAGAAAACA+AGG | 0.572872 | 6.2:+84465447 | None:intergenic |
ACATCATGTTACTTGACTAG+TGG | 0.580545 | 6.2:-84464262 | MS.gene05515:intron |
CAGTGGAGTATTGTCATTAG+CGG | 0.582868 | 6.2:-84464480 | MS.gene05515:intron |
GCAGATACCCAAAAGAGTTG+TGG | 0.585327 | 6.2:+84464793 | None:intergenic |
AGGAATGGCAAGACTAGCAA+TGG | 0.591507 | 6.2:+84469588 | None:intergenic |
CAACGTTATAGCAGTGCTAG+AGG | 0.597307 | 6.2:-84467793 | MS.gene05515:CDS |
AGATGGCCTTAGTAAACCCT+AGG | 0.598373 | 6.2:-84461424 | MS.gene05515:CDS |
ATGTAGGAAGGAATAGCCAT+AGG | 0.601997 | 6.2:-84464373 | MS.gene05515:intron |
ATCTCGTAGGTTGATTAAAG+GGG | 0.603398 | 6.2:-84469692 | MS.gene05515:CDS |
CCCTCCCATAAAGCCAGTGA+TGG | 0.605304 | 6.2:+84467884 | None:intergenic |
CCATCACTGGCTTTATGGGA+GGG | 0.606512 | 6.2:-84467884 | MS.gene05515:CDS |
CTCATCCTCCAACAATTCAA+GGG | 0.613502 | 6.2:-84467849 | MS.gene05515:CDS |
ACGGCTGTGAATTACAATGC+AGG | 0.613947 | 6.2:-84463157 | MS.gene05515:CDS |
AAGATCCAAACAAGTTCATG+AGG | 0.614928 | 6.2:+84464287 | None:intergenic |
ATGAAAGCTGGACTAATCAG+TGG | 0.624504 | 6.2:-84464497 | MS.gene05515:CDS |
AACGTTATAGCAGTGCTAGA+GGG | 0.625688 | 6.2:-84467792 | MS.gene05515:CDS |
GACTTACAAAGGCCAATGAG+AGG | 0.626933 | 6.2:+84469529 | None:intergenic |
ATAATTTATCAACCCTAACA+TGG | 0.629736 | 6.2:+84463015 | None:intergenic |
CATCTTTACCAATAGACATG+AGG | 0.630254 | 6.2:-84467769 | MS.gene05515:intron |
GAGTACTCACAGAGAGCATG+AGG | 0.634898 | 6.2:+84462897 | None:intergenic |
AAAACAGCATACACTAGTGG+TGG | 0.646156 | 6.2:+84468786 | None:intergenic |
TTGGCATAACTAATGCCTTG+AGG | 0.647323 | 6.2:+84469568 | None:intergenic |
GTGAACTTATCAACCCAAAG+AGG | 0.656250 | 6.2:-84469799 | MS.gene05515:CDS |
TTTGCCTGAAAGGATCATCA+GGG | 0.664813 | 6.2:+84469734 | None:intergenic |
TTACAAAGGCCAATGAGAGG+AGG | 0.669733 | 6.2:+84469532 | None:intergenic |
ATAGCTGATAGAGCAACAAG+TGG | 0.676923 | 6.2:+84463049 | None:intergenic |
TAGGTGGGACATCTAGACAA+AGG | 0.681215 | 6.2:-84464578 | MS.gene05515:CDS |
GCAAGAGATTCATCATAATG+GGG | 0.683072 | 6.2:-84469821 | MS.gene05515:CDS |
TAAATCTGCAATGACAAATG+TGG | 0.698801 | 6.2:-84463131 | MS.gene05515:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 84461277 | 84469854 | 84461277 | ID=MS.gene05515 |
chr6.2 | mRNA | 84461277 | 84469854 | 84461277 | ID=MS.gene05515.t1;Parent=MS.gene05515 |
chr6.2 | exon | 84469536 | 84469854 | 84469536 | ID=MS.gene05515.t1.exon1;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84469536 | 84469854 | 84469536 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84468615 | 84468822 | 84468615 | ID=MS.gene05515.t1.exon2;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84468615 | 84468822 | 84468615 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84467770 | 84467941 | 84467770 | ID=MS.gene05515.t1.exon3;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84467770 | 84467941 | 84467770 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84465439 | 84465504 | 84465439 | ID=MS.gene05515.t1.exon4;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84465439 | 84465504 | 84465439 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84464714 | 84464827 | 84464714 | ID=MS.gene05515.t1.exon5;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84464714 | 84464827 | 84464714 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84464481 | 84464597 | 84464481 | ID=MS.gene05515.t1.exon6;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84464481 | 84464597 | 84464481 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84464263 | 84464389 | 84464263 | ID=MS.gene05515.t1.exon7;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84464263 | 84464389 | 84464263 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84462907 | 84463193 | 84462907 | ID=MS.gene05515.t1.exon8;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84462907 | 84463193 | 84462907 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84462352 | 84462542 | 84462352 | ID=MS.gene05515.t1.exon9;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84462352 | 84462542 | 84462352 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84462171 | 84462244 | 84462171 | ID=MS.gene05515.t1.exon10;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84462171 | 84462244 | 84462171 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84461697 | 84461773 | 84461697 | ID=MS.gene05515.t1.exon11;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84461697 | 84461773 | 84461697 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
chr6.2 | exon | 84461277 | 84461444 | 84461277 | ID=MS.gene05515.t1.exon12;Parent=MS.gene05515.t1 |
chr6.2 | CDS | 84461277 | 84461444 | 84461277 | ID=cds.MS.gene05515.t1;Parent=MS.gene05515.t1 |
Gene Sequence |
Protein sequence |