Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39959.t1 | XP_003590611.1 | 94.8 | 116 | 6 | 0 | 1 | 116 | 75 | 190 | 1.20E-54 | 222.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39959.t1 | G7IDM6 | 94.8 | 116 | 6 | 0 | 1 | 116 | 75 | 190 | 8.8e-55 | 222.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene39959 | 0.917699 | 3.86E-86 | -1.69E-46 |
| MS.gene050170 | MS.gene39959 | -0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene39959 | -0.80681 | 6.86E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene39959 | 0.840949 | 6.39E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene39959 | -0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene39959 | -0.807255 | 5.53E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene39959 | -0.806286 | 8.85E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene39959 | 0.836816 | 7.50E-57 | -1.69E-46 |
| MS.gene051422 | MS.gene39959 | 0.825621 | 4.24E-54 | -1.69E-46 |
| MS.gene051651 | MS.gene39959 | 0.842823 | 2.04E-58 | -1.69E-46 |
| MS.gene053420 | MS.gene39959 | 0.823818 | 1.13E-53 | -1.69E-46 |
| MS.gene053568 | MS.gene39959 | 0.832172 | 1.10E-55 | -1.69E-46 |
| MS.gene053569 | MS.gene39959 | 0.816644 | 4.97E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene39959 | -0.800668 | 1.29E-48 | -1.69E-46 |
| MS.gene055510 | MS.gene39959 | 0.803333 | 3.67E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene39959 | -0.808536 | 2.95E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene39959 | -0.81888 | 1.56E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene39959 | -0.830255 | 3.25E-55 | -1.69E-46 |
| MS.gene05590 | MS.gene39959 | 0.81979 | 9.65E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene39959 | -0.804637 | 1.96E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene39959 | -0.828825 | 7.25E-55 | -1.69E-46 |
| MS.gene056697 | MS.gene39959 | 0.805912 | 1.06E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene39959 | 0.834016 | 3.82E-56 | -1.69E-46 |
| MS.gene057717 | MS.gene39959 | 0.847004 | 1.52E-59 | -1.69E-46 |
| MS.gene057768 | MS.gene39959 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene058067 | MS.gene39959 | 0.827498 | 1.51E-54 | -1.69E-46 |
| MS.gene058068 | MS.gene39959 | 0.862076 | 6.55E-64 | -1.69E-46 |
| MS.gene058268 | MS.gene39959 | 0.806273 | 8.91E-50 | -1.69E-46 |
| MS.gene058269 | MS.gene39959 | 0.800402 | 1.47E-48 | -1.69E-46 |
| MS.gene059069 | MS.gene39959 | 0.829446 | 5.12E-55 | -1.69E-46 |
| MS.gene059070 | MS.gene39959 | 0.833357 | 5.59E-56 | -1.69E-46 |
| MS.gene05926 | MS.gene39959 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene059685 | MS.gene39959 | 0.837358 | 5.45E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene39959 | -0.808567 | 2.91E-50 | -1.69E-46 |
| MS.gene06000 | MS.gene39959 | -0.805132 | 1.55E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene39959 | 0.809304 | 2.02E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene39959 | -0.808144 | 3.58E-50 | -1.69E-46 |
| MS.gene060823 | MS.gene39959 | 0.828745 | 7.58E-55 | -1.69E-46 |
| MS.gene060982 | MS.gene39959 | -0.814127 | 1.81E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene39959 | 0.830725 | 2.50E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39959.t1 | MTR_1g071720 | 94.828 | 116 | 6 | 0 | 1 | 116 | 75 | 190 | 2.36e-76 | 224 |
| MS.gene39959.t1 | MTR_1g071720 | 93.966 | 116 | 6 | 1 | 1 | 116 | 75 | 189 | 8.96e-74 | 217 |
| MS.gene39959.t1 | MTR_5g006940 | 52.874 | 87 | 37 | 2 | 3 | 89 | 76 | 158 | 6.16e-19 | 78.6 |
| MS.gene39959.t1 | MTR_1g103420 | 38.261 | 115 | 47 | 3 | 1 | 94 | 74 | 185 | 1.12e-16 | 72.8 |
| MS.gene39959.t1 | MTR_7g095250 | 40.741 | 108 | 52 | 4 | 1 | 107 | 39 | 135 | 1.78e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39959.t1 | AT2G48140 | 52.459 | 61 | 28 | 1 | 1 | 61 | 68 | 127 | 4.38e-14 | 63.9 |
| MS.gene39959.t1 | AT2G48140 | 56.863 | 51 | 22 | 0 | 1 | 51 | 68 | 118 | 7.11e-14 | 65.1 |
| MS.gene39959.t1 | AT1G05450 | 55.357 | 56 | 24 | 1 | 1 | 56 | 71 | 125 | 1.44e-13 | 64.3 |
Find 31 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGCAGGTCCAGCTATATT+TGG | 0.239605 | 1.4:-58669471 | MS.gene39959:intron |
| GAAGGAAAGAACTCTATTAA+TGG | 0.297936 | 1.4:+58670986 | None:intergenic |
| GAGTGTTGAATTGCATATTT+AGG | 0.320907 | 1.4:+58669230 | None:intergenic |
| CTTGGGCGACTATGCTTCAT+TGG | 0.351622 | 1.4:+58669176 | None:intergenic |
| CTCAAGGGAGAAGCATTAAT+TGG | 0.353542 | 1.4:+58669426 | None:intergenic |
| TTAATGGGTGGTAGTTGAAA+TGG | 0.405959 | 1.4:+58671002 | None:intergenic |
| AAGGAAAGAACTCTATTAAT+GGG | 0.415197 | 1.4:+58670987 | None:intergenic |
| TAGTCGCCCAAGAAAACTTC+AGG | 0.419211 | 1.4:-58669165 | MS.gene39959:CDS |
| GGCTCTCCTTTACCAGCTCC+AGG | 0.442482 | 1.4:-58670778 | MS.gene39959:intron |
| ATTGTGCATGGAATCCATTC+AGG | 0.446420 | 1.4:+58670943 | None:intergenic |
| CCATTCAGGTTGCATGATTG+TGG | 0.485094 | 1.4:+58670957 | None:intergenic |
| CATTAATTGGCGGAAGAGAC+GGG | 0.492843 | 1.4:+58669439 | None:intergenic |
| ATATTTACCTTGCGGACTCA+AGG | 0.503866 | 1.4:+58669410 | None:intergenic |
| ACATTTGATCCAAATATAGC+TGG | 0.505446 | 1.4:+58669462 | None:intergenic |
| CCACAATCATGCAACCTGAA+TGG | 0.505888 | 1.4:-58670957 | MS.gene39959:CDS |
| GCATTAATTGGCGGAAGAGA+CGG | 0.508648 | 1.4:+58669438 | None:intergenic |
| AGGAGAATCAGCTACCTCAA+TGG | 0.512985 | 1.4:+58669250 | None:intergenic |
| TGGATTCCATGCACAATGCA+AGG | 0.527893 | 1.4:-58670937 | MS.gene39959:CDS |
| TAAGTACCTGGAGCTGGTAA+AGG | 0.529079 | 1.4:+58670772 | None:intergenic |
| GCATGATTGTGGAAGGAAGA+AGG | 0.544924 | 1.4:+58670968 | None:intergenic |
| TAATAATAAGTACCTGGAGC+TGG | 0.545527 | 1.4:+58670766 | None:intergenic |
| TCAGGTTGCATGATTGTGGA+AGG | 0.574464 | 1.4:+58670961 | None:intergenic |
| TATTTACCTTGCGGACTCAA+GGG | 0.591593 | 1.4:+58669411 | None:intergenic |
| AAGGGAGAAGCATTAATTGG+CGG | 0.596813 | 1.4:+58669429 | None:intergenic |
| CGCAGTAGATGAAACCATTG+AGG | 0.601013 | 1.4:-58669264 | MS.gene39959:intron |
| GTGTACCCTTGCATTGTGCA+TGG | 0.619403 | 1.4:+58670931 | None:intergenic |
| GGATTCCATGCACAATGCAA+GGG | 0.619466 | 1.4:-58670936 | MS.gene39959:intron |
| TGCAATTCAACACTCAGCAA+AGG | 0.626463 | 1.4:-58669222 | MS.gene39959:CDS |
| GCTTCTCCCTTGAGTCCGCA+AGG | 0.628732 | 1.4:-58669417 | MS.gene39959:intron |
| GAAAGAACTCTATTAATGGG+TGG | 0.644751 | 1.4:+58670990 | None:intergenic |
| TGGTAGTTGAAATGGAACGT+TGG | 0.743680 | 1.4:+58671010 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGAAACAATTTTTTTAA+AGG | + | chr1.4:58669992-58670011 | None:intergenic | 10.0% |
| !!! | ATTTTAAAGGAAATTAAAAT+AGG | + | chr1.4:58669334-58669353 | None:intergenic | 10.0% |
| !!! | TTATATACAAATGATTTTAA+AGG | + | chr1.4:58669347-58669366 | None:intergenic | 10.0% |
| !! | ATGTAAACACAAAATTAAAA+GGG | - | chr1.4:58670830-58670849 | MS.gene39959:intron | 15.0% |
| !! | GTATATAAAATGTCTAATAA+AGG | - | chr1.4:58669359-58669378 | MS.gene39959:intron | 15.0% |
| !! | TATGTAAACACAAAATTAAA+AGG | - | chr1.4:58670829-58670848 | MS.gene39959:intron | 15.0% |
| !! | TATGTAATTAAAAACTTGAT+CGG | + | chr1.4:58669619-58669638 | None:intergenic | 15.0% |
| !! | TTTAATTAATAATAAGTACC+TGG | + | chr1.4:58669432-58669451 | None:intergenic | 15.0% |
| !!! | AAATTATTTTACTTTCACTT+TGG | - | chr1.4:58669910-58669929 | MS.gene39959:intron | 15.0% |
| !!! | ATGATCTTTAAAAATTATTC+AGG | - | chr1.4:58670656-58670675 | MS.gene39959:intron | 15.0% |
| !!! | ATTTTTTATGTCAACAAATT+GGG | + | chr1.4:58670889-58670908 | None:intergenic | 15.0% |
| !!! | TATTTTTTATGTCAACAAAT+TGG | + | chr1.4:58670890-58670909 | None:intergenic | 15.0% |
| !!! | TTTTAAACATTTTATTTGCA+AGG | - | chr1.4:58669583-58669602 | MS.gene39959:intron | 15.0% |
| !! | ATCACATAATTTATCACAAA+AGG | + | chr1.4:58669301-58669320 | None:intergenic | 20.0% |
| !! | ATGTAACATTCATATATAAG+AGG | + | chr1.4:58670595-58670614 | None:intergenic | 20.0% |
| !! | CAAATTAAATTTACTAGCTA+TGG | - | chr1.4:58670265-58670284 | MS.gene39959:intron | 20.0% |
| !! | GTATCAAAATTAAACAAAAC+AGG | + | chr1.4:58669945-58669964 | None:intergenic | 20.0% |
| !!! | TAGCTAGTAAATTTAATTTG+TGG | + | chr1.4:58670265-58670284 | None:intergenic | 20.0% |
| !!! | TTGTGGTTATATTATACTTT+TGG | + | chr1.4:58670248-58670267 | None:intergenic | 20.0% |
| !!! | TTTTGTGATAAATTATGTGA+TGG | - | chr1.4:58669300-58669319 | MS.gene39959:intron | 20.0% |
| ! | AAACACAAAATTAAAAGGGT+TGG | - | chr1.4:58670834-58670853 | MS.gene39959:intron | 25.0% |
| ! | AAGGAAAGAACTCTATTAAT+GGG | + | chr1.4:58669205-58669224 | None:intergenic | 25.0% |
| ! | ATTAGATACTTTGATGCTTT+AGG | + | chr1.4:58670082-58670101 | None:intergenic | 25.0% |
| ! | CAAACTGTAAAATGTTTGTA+AGG | + | chr1.4:58669967-58669986 | None:intergenic | 25.0% |
| ! | GATGTTCTCAAAAAAATTAG+TGG | + | chr1.4:58669704-58669723 | None:intergenic | 25.0% |
| ! | TAACAATGATATTTACCTTG+CGG | + | chr1.4:58670790-58670809 | None:intergenic | 25.0% |
| ! | TAATTAAAAACTTGATCGGA+TGG | + | chr1.4:58669615-58669634 | None:intergenic | 25.0% |
| !! | CTTACAAACATTTTACAGTT+TGG | - | chr1.4:58669965-58669984 | MS.gene39959:intron | 25.0% |
| !! | GTATCAAGTTTAAAACTACT+AGG | + | chr1.4:58670317-58670336 | None:intergenic | 25.0% |
| !! | TGGAAATATATAAAGGTACA+TGG | - | chr1.4:58670631-58670650 | MS.gene39959:intron | 25.0% |
| !! | TGGTCTCTTAAGTTAATTTT+AGG | + | chr1.4:58670228-58670247 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTAAGTAGTCCAA+TGG | - | chr1.4:58669460-58669479 | MS.gene39959:CDS | 25.0% |
| !!! | CTCTCATTTGAGTTTTTAAA+CGG | - | chr1.4:58669735-58669754 | MS.gene39959:intron | 25.0% |
| !!! | TGAGTTCTGGAAATATATAA+AGG | - | chr1.4:58670624-58670643 | MS.gene39959:intron | 25.0% |
| AAAAAGATGATAGCATGCTT+CGG | + | chr1.4:58670339-58670358 | None:intergenic | 30.0% | |
| AAAGTGTGTCGAAAAAGAAT+AGG | + | chr1.4:58669659-58669678 | None:intergenic | 30.0% | |
| AATTTGTATATTGCAGCTTC+TGG | - | chr1.4:58669390-58669409 | MS.gene39959:intron | 30.0% | |
| ACAAATTGGGTGATGTATAA+TGG | + | chr1.4:58670876-58670895 | None:intergenic | 30.0% | |
| ACATTTGATCCAAATATAGC+TGG | + | chr1.4:58670730-58670749 | None:intergenic | 30.0% | |
| GAAAAAGAATAGGTTAGAGA+CGG | + | chr1.4:58669649-58669668 | None:intergenic | 30.0% | |
| GAAGGAAAGAACTCTATTAA+TGG | + | chr1.4:58669206-58669225 | None:intergenic | 30.0% | |
| TAAATAAGCACTCACATTTC+AGG | + | chr1.4:58670428-58670447 | None:intergenic | 30.0% | |
| TCAACTGAACTTCATTTAGA+AGG | - | chr1.4:58669556-58669575 | MS.gene39959:intron | 30.0% | |
| TGTTCAACGTTCATAACTTA+AGG | + | chr1.4:58670020-58670039 | None:intergenic | 30.0% | |
| ! | TGAATTCCTGAAGTTTTCTT+GGG | + | chr1.4:58671033-58671052 | None:intergenic | 30.0% |
| ! | TTGAATTCCTGAAGTTTTCT+TGG | + | chr1.4:58671034-58671053 | None:intergenic | 30.0% |
| !! | CAAAAAAATTAGTGGACTCA+TGG | + | chr1.4:58669696-58669715 | None:intergenic | 30.0% |
| !! | GAGTGTTGAATTGCATATTT+AGG | + | chr1.4:58670962-58670981 | None:intergenic | 30.0% |
| !!! | TTCATTGGTACTAGTTTTGT+CGG | + | chr1.4:58671001-58671020 | None:intergenic | 30.0% |
| CACAAATTCATGGTCAACAT+TGG | + | chr1.4:58670388-58670407 | None:intergenic | 35.0% | |
| GAAAGAACTCTATTAATGGG+TGG | + | chr1.4:58669202-58669221 | None:intergenic | 35.0% | |
| TAATAATAAGTACCTGGAGC+TGG | + | chr1.4:58669426-58669445 | None:intergenic | 35.0% | |
| TTCATGGACATTAGGACATA+TGG | + | chr1.4:58669532-58669551 | None:intergenic | 35.0% | |
| ! | ACATTAGGACATATGGATTG+AGG | + | chr1.4:58669525-58669544 | None:intergenic | 35.0% |
| ! | ATATCTGAGACCATCTATGA+TGG | + | chr1.4:58670492-58670511 | None:intergenic | 35.0% |
| ! | ATTTTCTATGGCATAAGCCA+TGG | + | chr1.4:58670365-58670384 | None:intergenic | 35.0% |
| ! | GCTATCATCTTTTTATGCCA+TGG | - | chr1.4:58670345-58670364 | MS.gene39959:intron | 35.0% |
| ! | GGTCAACATTGGATTTTCTA+TGG | + | chr1.4:58670377-58670396 | None:intergenic | 35.0% |
| ! | TTAATGGGTGGTAGTTGAAA+TGG | + | chr1.4:58669190-58669209 | None:intergenic | 35.0% |
| ! | TTGATAGCTTCATGGACATT+AGG | + | chr1.4:58669540-58669559 | None:intergenic | 35.0% |
| !! | AAGTTCAGTTGATAGCTTCA+TGG | + | chr1.4:58669548-58669567 | None:intergenic | 35.0% |
| ATAAGCACTCACATTTCAGG+AGG | + | chr1.4:58670425-58670444 | None:intergenic | 40.0% | |
| ATATTTACCTTGCGGACTCA+AGG | + | chr1.4:58670782-58670801 | None:intergenic | 40.0% | |
| ATTGTGCATGGAATCCATTC+AGG | + | chr1.4:58669249-58669268 | None:intergenic | 40.0% | |
| CACACTGTCTCACAAATTCA+TGG | + | chr1.4:58670398-58670417 | None:intergenic | 40.0% | |
| CCAACAAAAGCAAAGGAAAG+AGG | + | chr1.4:58670702-58670721 | None:intergenic | 40.0% | |
| TAAGCACTCACATTTCAGGA+GGG | + | chr1.4:58670424-58670443 | None:intergenic | 40.0% | |
| TATTTACCTTGCGGACTCAA+GGG | + | chr1.4:58670781-58670800 | None:intergenic | 40.0% | |
| TGCAATTCAACACTCAGCAA+AGG | - | chr1.4:58670967-58670986 | MS.gene39959:CDS | 40.0% | |
| TGGTAGTTGAAATGGAACGT+TGG | + | chr1.4:58669182-58669201 | None:intergenic | 40.0% | |
| !! | AAGGGAGAAGCATTAATTGG+CGG | + | chr1.4:58670763-58670782 | None:intergenic | 40.0% |
| !! | CCTCTTTCCTTTGCTTTTGT+TGG | - | chr1.4:58670699-58670718 | MS.gene39959:intron | 40.0% |
| !! | CTCAAGGGAGAAGCATTAAT+TGG | + | chr1.4:58670766-58670785 | None:intergenic | 40.0% |
| !! | TTTCCTTTGCTTTTGTTGGC+AGG | - | chr1.4:58670703-58670722 | MS.gene39959:intron | 40.0% |
| AAGCACTCACATTTCAGGAG+GGG | + | chr1.4:58670423-58670442 | None:intergenic | 45.0% | |
| ACATGCTCAACGTTGAGTTC+TGG | - | chr1.4:58670611-58670630 | MS.gene39959:intron | 45.0% | |
| AGGAGAATCAGCTACCTCAA+TGG | + | chr1.4:58670942-58670961 | None:intergenic | 45.0% | |
| CATTAATTGGCGGAAGAGAC+GGG | + | chr1.4:58670753-58670772 | None:intergenic | 45.0% | |
| CCACAATCATGCAACCTGAA+TGG | - | chr1.4:58669232-58669251 | MS.gene39959:CDS | 45.0% | |
| CGCAGTAGATGAAACCATTG+AGG | - | chr1.4:58670925-58670944 | MS.gene39959:intron | 45.0% | |
| CTCCACATGAGTTTAGCCAT+TGG | + | chr1.4:58669479-58669498 | None:intergenic | 45.0% | |
| GCATGATTGTGGAAGGAAGA+AGG | + | chr1.4:58669224-58669243 | None:intergenic | 45.0% | |
| GCATTAATTGGCGGAAGAGA+CGG | + | chr1.4:58670754-58670773 | None:intergenic | 45.0% | |
| GGATTCCATGCACAATGCAA+GGG | - | chr1.4:58669253-58669272 | MS.gene39959:CDS | 45.0% | |
| GTCCAATGGCTAAACTCATG+TGG | - | chr1.4:58669474-58669493 | MS.gene39959:intron | 45.0% | |
| TAAGTACCTGGAGCTGGTAA+AGG | + | chr1.4:58669420-58669439 | None:intergenic | 45.0% | |
| TAGTCGCCCAAGAAAACTTC+AGG | - | chr1.4:58671024-58671043 | MS.gene39959:CDS | 45.0% | |
| TGGATTCCATGCACAATGCA+AGG | - | chr1.4:58669252-58669271 | MS.gene39959:CDS | 45.0% | |
| TTGGCAGGTCCAGCTATATT+TGG | - | chr1.4:58670718-58670737 | MS.gene39959:intron | 45.0% | |
| TTTCTCCACGCCATCATAGA+TGG | - | chr1.4:58670479-58670498 | MS.gene39959:intron | 45.0% | |
| ! | TCAGGTTGCATGATTGTGGA+AGG | + | chr1.4:58669231-58669250 | None:intergenic | 45.0% |
| ! | TCTATGATGGCGTGGAGAAA+AGG | + | chr1.4:58670479-58670498 | None:intergenic | 45.0% |
| !! | CCATTCAGGTTGCATGATTG+TGG | + | chr1.4:58669235-58669254 | None:intergenic | 45.0% |
| CTTGGGCGACTATGCTTCAT+TGG | + | chr1.4:58671016-58671035 | None:intergenic | 50.0% | |
| GGACCTGCCAACAAAAGCAA+AGG | + | chr1.4:58670709-58670728 | None:intergenic | 50.0% | |
| GTGTACCCTTGCATTGTGCA+TGG | + | chr1.4:58669261-58669280 | None:intergenic | 50.0% | |
| ! | TGAGACCATCTATGATGGCG+TGG | + | chr1.4:58670487-58670506 | None:intergenic | 50.0% |
| !!! | GGTACTAGTTTTGTCGGTGC+TGG | + | chr1.4:58670995-58671014 | None:intergenic | 50.0% |
| GCTTCTCCCTTGAGTCCGCA+AGG | - | chr1.4:58670772-58670791 | MS.gene39959:intron | 60.0% | |
| GGCTCTCCTTTACCAGCTCC+AGG | - | chr1.4:58669411-58669430 | MS.gene39959:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 58669151 | 58671060 | 58669151 | ID=MS.gene39959 |
| chr1.4 | mRNA | 58669151 | 58671060 | 58669151 | ID=MS.gene39959.t1;Parent=MS.gene39959 |
| chr1.4 | exon | 58670937 | 58671060 | 58670937 | ID=MS.gene39959.t1.exon1;Parent=MS.gene39959.t1 |
| chr1.4 | CDS | 58670937 | 58671060 | 58670937 | ID=cds.MS.gene39959.t1;Parent=MS.gene39959.t1 |
| chr1.4 | exon | 58670779 | 58670805 | 58670779 | ID=MS.gene39959.t1.exon2;Parent=MS.gene39959.t1 |
| chr1.4 | CDS | 58670779 | 58670805 | 58670779 | ID=cds.MS.gene39959.t1;Parent=MS.gene39959.t1 |
| chr1.4 | exon | 58669418 | 58669486 | 58669418 | ID=MS.gene39959.t1.exon3;Parent=MS.gene39959.t1 |
| chr1.4 | CDS | 58669418 | 58669486 | 58669418 | ID=cds.MS.gene39959.t1;Parent=MS.gene39959.t1 |
| chr1.4 | exon | 58669151 | 58669281 | 58669151 | ID=MS.gene39959.t1.exon4;Parent=MS.gene39959.t1 |
| chr1.4 | CDS | 58669151 | 58669281 | 58669151 | ID=cds.MS.gene39959.t1;Parent=MS.gene39959.t1 |
| Gene Sequence |
| Protein sequence |
