Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055924.t1 | AES80936.1 | 87.1 | 132 | 16 | 1 | 1 | 131 | 8 | 139 | 9.90E-39 | 169.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055924.t1 | G7L1K2 | 87.1 | 132 | 16 | 1 | 1 | 131 | 8 | 139 | 7.1e-39 | 169.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055924 | MS.gene056979 | 0.806074 | 9.81E-50 | -1.69E-46 |
| MS.gene055924 | MS.gene68764 | 0.811713 | 6.10E-51 | -1.69E-46 |
| MS.gene055924 | MS.gene78202 | 0.815793 | 7.71E-52 | -1.69E-46 |
| MS.gene055924 | MS.gene78247 | 0.80349 | 3.40E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055924.t1 | MTR_7g086700 | 90.062 | 161 | 15 | 1 | 1 | 160 | 8 | 168 | 1.38e-92 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055924.t1 | AT5G17840 | 64.394 | 132 | 39 | 1 | 27 | 158 | 30 | 153 | 8.58e-48 | 152 |
Find 45 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAAAGTGATTGGTTTAT+TGG | 0.124386 | 7.3:+22179733 | None:intergenic |
| CCCAATAAACCAATCACTTT+TGG | 0.194465 | 7.3:-22179734 | MS.gene055924:CDS |
| TATGCCCTGGCTTTCCATTA+TGG | 0.210627 | 7.3:+22177543 | None:intergenic |
| GGCTTCTCAATTATTTCTTC+GGG | 0.265281 | 7.3:+22177682 | None:intergenic |
| CTTCTAGCTGCTCTTCTAAT+GGG | 0.266040 | 7.3:-22179664 | MS.gene055924:CDS |
| CCAAAAGTGATTGGTTTATT+GGG | 0.289510 | 7.3:+22179734 | None:intergenic |
| TGTGCCACCTGTGCAGGTTC+AGG | 0.292596 | 7.3:-22177580 | MS.gene055924:CDS |
| GCTTCTAGCTGCTCTTCTAA+TGG | 0.312131 | 7.3:-22179665 | MS.gene055924:CDS |
| GAAGCCTGTTGGGTTATCTT+TGG | 0.312273 | 7.3:-22177665 | MS.gene055924:CDS |
| AAAGTCGGACTTAGATCATT+TGG | 0.333879 | 7.3:+22177326 | None:intergenic |
| AGCTGCACCATTGTTGTTAG+AGG | 0.342004 | 7.3:+22179685 | None:intergenic |
| AGGCTTCTCAATTATTTCTT+CGG | 0.345522 | 7.3:+22177681 | None:intergenic |
| TTGCTTTGTGCCACCTGTGC+AGG | 0.359009 | 7.3:-22177586 | MS.gene055924:CDS |
| CTCAATTATTTCTTCGGGGA+TGG | 0.397731 | 7.3:+22177687 | None:intergenic |
| TCTATATGTTGACTCCATAA+TGG | 0.402374 | 7.3:-22177557 | MS.gene055924:CDS |
| GGCACAAAGCAAGGCACCTT+TGG | 0.403486 | 7.3:+22177597 | None:intergenic |
| TCTTTGGCTGAGAAAGCTAT+TGG | 0.409967 | 7.3:-22177649 | MS.gene055924:CDS |
| ACATTGGACCCAAAAGTGAT+TGG | 0.420334 | 7.3:+22179725 | None:intergenic |
| GGCATGGCAATCAGTACATC+GGG | 0.423930 | 7.3:+22177618 | None:intergenic |
| ATATAATGTGTACAGAATGT+GGG | 0.451225 | 7.3:-22177368 | MS.gene055924:CDS |
| AAATAATTGAGAAGCCTGTT+GGG | 0.470227 | 7.3:-22177675 | MS.gene055924:CDS |
| TTGTTGCGCATGTAGGTTGT+GGG | 0.480660 | 7.3:-22177401 | MS.gene055924:intron |
| GAAATAATTGAGAAGCCTGT+TGG | 0.485683 | 7.3:-22177676 | MS.gene055924:CDS |
| TCAGCCAAAGATAACCCAAC+AGG | 0.498857 | 7.3:+22177661 | None:intergenic |
| TGACTCCATAATGGAAAGCC+AGG | 0.500069 | 7.3:-22177548 | MS.gene055924:CDS |
| AAGAACACGAACTTTGACAT+TGG | 0.516739 | 7.3:+22179709 | None:intergenic |
| ATTGTCAAAGTTCGTTGCCT+AGG | 0.517164 | 7.3:-22177520 | MS.gene055924:intron |
| AATATAATGTGTACAGAATG+TGG | 0.518846 | 7.3:-22177369 | MS.gene055924:CDS |
| TGCACAGGTGGCACAAAGCA+AGG | 0.543720 | 7.3:+22177588 | None:intergenic |
| ATATAGACCTGAACCTGCAC+AGG | 0.566751 | 7.3:+22177573 | None:intergenic |
| GAACTTTGACAATTATGCCC+TGG | 0.569803 | 7.3:+22177530 | None:intergenic |
| TTCTAGCTGCTCTTCTAATG+GGG | 0.586305 | 7.3:-22179663 | MS.gene055924:intron |
| AAAGCAAGGCACCTTTGGCA+TGG | 0.588894 | 7.3:+22177602 | None:intergenic |
| TATAATGTGTACAGAATGTG+GGG | 0.598462 | 7.3:-22177367 | MS.gene055924:CDS |
| GTTCTTTCCTCTAACAACAA+TGG | 0.600278 | 7.3:-22179692 | MS.gene055924:CDS |
| TGGCATGGCAATCAGTACAT+CGG | 0.603576 | 7.3:+22177617 | None:intergenic |
| TAGACCTGAACCTGCACAGG+TGG | 0.615029 | 7.3:+22177576 | None:intergenic |
| GCTTCTCAATTATTTCTTCG+GGG | 0.625434 | 7.3:+22177683 | None:intergenic |
| GTTGCGCATGTAGGTTGTGG+GGG | 0.651036 | 7.3:-22177399 | MS.gene055924:intron |
| GACTCCATAATGGAAAGCCA+GGG | 0.660431 | 7.3:-22177547 | MS.gene055924:CDS |
| TGTTGCGCATGTAGGTTGTG+GGG | 0.669492 | 7.3:-22177400 | MS.gene055924:intron |
| TGTACTGATTGCCATGCCAA+AGG | 0.671481 | 7.3:-22177613 | MS.gene055924:CDS |
| TAATGTGTACAGAATGTGGG+GGG | 0.708801 | 7.3:-22177365 | MS.gene055924:CDS |
| ATAATGTGTACAGAATGTGG+GGG | 0.725696 | 7.3:-22177366 | MS.gene055924:CDS |
| GCATGGCAATCAGTACATCG+GGG | 0.745571 | 7.3:+22177619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTCATTAATTTAAAATTC+TGG | - | chr7.3:22178732-22178751 | MS.gene055924:intron | 10.0% |
| !! | AAAGATATTATTGAATCATA+TGG | - | chr7.3:22178203-22178222 | MS.gene055924:intron | 15.0% |
| !! | ATGCATAAATAGATAAATAA+AGG | + | chr7.3:22178806-22178825 | None:intergenic | 15.0% |
| !!! | CAAAAATTATCTAACTTTTA+TGG | + | chr7.3:22179220-22179239 | None:intergenic | 15.0% |
| !! | AACAGCTTATATATGATAAT+GGG | + | chr7.3:22177908-22177927 | None:intergenic | 20.0% |
| !! | AATTAAAAATCTCAAGAGAT+AGG | - | chr7.3:22177854-22177873 | MS.gene055924:intron | 20.0% |
| !! | ATGAATAAATTGACAAATCA+TGG | + | chr7.3:22178719-22178738 | None:intergenic | 20.0% |
| !! | ATTTGATAAACAGATATAAG+TGG | - | chr7.3:22178058-22178077 | MS.gene055924:intron | 20.0% |
| !! | CATTTAGAAACATCTTAAAT+TGG | + | chr7.3:22178169-22178188 | None:intergenic | 20.0% |
| !! | GTAGATAAAAATACAGAAAT+AGG | - | chr7.3:22179161-22179180 | MS.gene055924:intron | 20.0% |
| !! | GTATATTTATAACCAAACAT+TGG | + | chr7.3:22177642-22177661 | None:intergenic | 20.0% |
| !! | TTATTGAATCATATGGAATT+AGG | - | chr7.3:22178210-22178229 | MS.gene055924:intron | 20.0% |
| !! | TTCAATAATCTATAGAATTC+TGG | - | chr7.3:22177818-22177837 | MS.gene055924:intron | 20.0% |
| !!! | AATCATTTTATGCATTTACA+GGG | + | chr7.3:22178350-22178369 | None:intergenic | 20.0% |
| !!! | AGGAGATAAATGATATTTTA+TGG | - | chr7.3:22178475-22178494 | MS.gene055924:intron | 20.0% |
| !!! | TAAAATGATTGTGATTTGTA+AGG | - | chr7.3:22178360-22178379 | MS.gene055924:intron | 20.0% |
| ! | AATATAATGTGTACAGAATG+TGG | - | chr7.3:22179766-22179785 | MS.gene055924:CDS | 25.0% |
| ! | ATATAATGTGTACAGAATGT+GGG | - | chr7.3:22179767-22179786 | MS.gene055924:CDS | 25.0% |
| ! | GAACAGCTTATATATGATAA+TGG | + | chr7.3:22177909-22177928 | None:intergenic | 25.0% |
| ! | GAATTTGCGATAAACTTAAT+AGG | - | chr7.3:22178548-22178567 | MS.gene055924:intron | 25.0% |
| ! | TAAATTGACAAATCATGGAT+AGG | + | chr7.3:22178714-22178733 | None:intergenic | 25.0% |
| !! | AAATTTAAGATGCCAATGTT+TGG | - | chr7.3:22177627-22177646 | MS.gene055924:CDS | 25.0% |
| !! | ATTTAAAATTCTGGTTACTC+AGG | - | chr7.3:22178741-22178760 | MS.gene055924:intron | 25.0% |
| !! | CAATCATTTTATGCATTTAC+AGG | + | chr7.3:22178351-22178370 | None:intergenic | 25.0% |
| !! | CTTTTTATATTGCGACATTT+GGG | - | chr7.3:22178963-22178982 | MS.gene055924:intron | 25.0% |
| !! | TTTAAGATGTTTCTAAATGC+TGG | - | chr7.3:22178170-22178189 | MS.gene055924:intron | 25.0% |
| !! | TTTTTATATTGCGACATTTG+GGG | - | chr7.3:22178964-22178983 | MS.gene055924:intron | 25.0% |
| !!! | GTTACCTATTTCTGTATTTA+TGG | + | chr7.3:22179194-22179213 | None:intergenic | 25.0% |
| !!! | GTTTTTTCATTGTTAAAGCT+GGG | - | chr7.3:22178020-22178039 | MS.gene055924:intron | 25.0% |
| !!! | TGTTTTTTCATTGTTAAAGC+TGG | - | chr7.3:22178019-22178038 | MS.gene055924:intron | 25.0% |
| !!! | TTTTGATTAAAGACGTCTTT+AGG | - | chr7.3:22177597-22177616 | MS.gene055924:CDS | 25.0% |
| AAATAATTGAGAAGCCTGTT+GGG | - | chr7.3:22179460-22179479 | MS.gene055924:intron | 30.0% | |
| AATTATACAGCACACAAAAG+AGG | + | chr7.3:22178847-22178866 | None:intergenic | 30.0% | |
| ACATTTAGCAGAGGATAATA+AGG | + | chr7.3:22177666-22177685 | None:intergenic | 30.0% | |
| AGATTCAGATTGGTAAAGTT+AGG | + | chr7.3:22178612-22178631 | None:intergenic | 30.0% | |
| ATAAACTTAATAGGCCAATG+AGG | - | chr7.3:22178557-22178576 | MS.gene055924:intron | 30.0% | |
| ATAAGTGGTAGATAGATACT+TGG | - | chr7.3:22178073-22178092 | MS.gene055924:intron | 30.0% | |
| ATAGACTTGCATAGAATCAT+GGG | - | chr7.3:22178281-22178300 | MS.gene055924:intron | 30.0% | |
| CCAAATGTCGCAATATAAAA+AGG | + | chr7.3:22178965-22178984 | None:intergenic | 30.0% | |
| GGACAATTTAGATAACTCAA+TGG | - | chr7.3:22179004-22179023 | MS.gene055924:intron | 30.0% | |
| TAAGCTGTTCTTAAAATGCA+AGG | - | chr7.3:22177919-22177938 | MS.gene055924:intron | 30.0% | |
| TAAGTGGTAGATAGATACTT+GGG | - | chr7.3:22178074-22178093 | MS.gene055924:intron | 30.0% | |
| TATAATGTGTACAGAATGTG+GGG | - | chr7.3:22179768-22179787 | MS.gene055924:CDS | 30.0% | |
| TGAAATGAAACATTTAGCAG+AGG | + | chr7.3:22177675-22177694 | None:intergenic | 30.0% | |
| TTGTGATGAGCTATTATAAG+CGG | - | chr7.3:22179237-22179256 | MS.gene055924:intron | 30.0% | |
| TTTGATTCTCTCAACTTCAT+TGG | - | chr7.3:22178129-22178148 | MS.gene055924:intron | 30.0% | |
| ! | AGGCTTCTCAATTATTTCTT+CGG | + | chr7.3:22179457-22179476 | None:intergenic | 30.0% |
| ! | CCTTTTTATATTGCGACATT+TGG | - | chr7.3:22178962-22178981 | MS.gene055924:intron | 30.0% |
| ! | TCTCAACTTCATTGGATTTT+GGG | - | chr7.3:22178137-22178156 | MS.gene055924:intron | 30.0% |
| ! | TGTGTGAATAACGAATTTTG+AGG | + | chr7.3:22177351-22177370 | None:intergenic | 30.0% |
| !! | CCAAAAGTGATTGGTTTATT+GGG | + | chr7.3:22177404-22177423 | None:intergenic | 30.0% |
| !! | CCAATAAACCAATCACTTTT+GGG | - | chr7.3:22177402-22177421 | MS.gene055924:intron | 30.0% |
| !! | TCTATATGTTGACTCCATAA+TGG | - | chr7.3:22179578-22179597 | MS.gene055924:intron | 30.0% |
| !! | TGATGGATTTACAATGAGAT+CGG | - | chr7.3:22179271-22179290 | MS.gene055924:intron | 30.0% |
| !! | TTCATGTAGTTGATTTGTGT+CGG | - | chr7.3:22177691-22177710 | MS.gene055924:CDS | 30.0% |
| AAGAACACGAACTTTGACAT+TGG | + | chr7.3:22177429-22177448 | None:intergenic | 35.0% | |
| ACAGGAAAGAGAATATACCT+AGG | + | chr7.3:22179635-22179654 | None:intergenic | 35.0% | |
| ATAATGTGTACAGAATGTGG+GGG | - | chr7.3:22179769-22179788 | MS.gene055924:CDS | 35.0% | |
| ATAGCAGATGGATCTTGATT+AGG | - | chr7.3:22177950-22177969 | MS.gene055924:intron | 35.0% | |
| ATCTAAATTGTCCAAAACCG+AGG | + | chr7.3:22178997-22179016 | None:intergenic | 35.0% | |
| CACGCCATAAATACAGAAAT+AGG | - | chr7.3:22179187-22179206 | MS.gene055924:intron | 35.0% | |
| CATAGACTTGCATAGAATCA+TGG | - | chr7.3:22178280-22178299 | MS.gene055924:intron | 35.0% | |
| CATGATTCTATGCAAGTCTA+TGG | + | chr7.3:22178282-22178301 | None:intergenic | 35.0% | |
| CATTTATCTCCTCTTCAGAT+GGG | + | chr7.3:22178467-22178486 | None:intergenic | 35.0% | |
| CTTCTTCACATCTGTTTAGA+AGG | + | chr7.3:22179092-22179111 | None:intergenic | 35.0% | |
| GAAATAATTGAGAAGCCTGT+TGG | - | chr7.3:22179459-22179478 | MS.gene055924:intron | 35.0% | |
| GTATAGTTCAAACACAAGCA+AGG | + | chr7.3:22179671-22179690 | None:intergenic | 35.0% | |
| GTTCTTTCCTCTAACAACAA+TGG | - | chr7.3:22177443-22177462 | MS.gene055924:intron | 35.0% | |
| TCATATGGAATTAGGACTCT+AGG | - | chr7.3:22178218-22178237 | MS.gene055924:intron | 35.0% | |
| TCATTTATCTCCTCTTCAGA+TGG | + | chr7.3:22178468-22178487 | None:intergenic | 35.0% | |
| TGAAAAAACAGTATGCAGTG+CGG | + | chr7.3:22178009-22178028 | None:intergenic | 35.0% | |
| TTTGATATTGTTGCGCATGT+AGG | - | chr7.3:22179727-22179746 | MS.gene055924:CDS | 35.0% | |
| ! | CCCAATAAACCAATCACTTT+TGG | - | chr7.3:22177401-22177420 | MS.gene055924:intron | 35.0% |
| ! | CTCAACTTCATTGGATTTTG+GGG | - | chr7.3:22178138-22178157 | MS.gene055924:intron | 35.0% |
| ! | CTCTCAACTTCATTGGATTT+TGG | - | chr7.3:22178136-22178155 | MS.gene055924:intron | 35.0% |
| ! | GCTTCTCAATTATTTCTTCG+GGG | + | chr7.3:22179455-22179474 | None:intergenic | 35.0% |
| ! | GGCTTCTCAATTATTTCTTC+GGG | + | chr7.3:22179456-22179475 | None:intergenic | 35.0% |
| ! | GGGGGATAAAAGAATCATTT+TGG | - | chr7.3:22178924-22178943 | MS.gene055924:intron | 35.0% |
| ! | TAGGACTCTAGGAATCAAAT+TGG | - | chr7.3:22178229-22178248 | MS.gene055924:intron | 35.0% |
| ! | TTGATGCAGTCTGAAACATA+AGG | + | chr7.3:22179365-22179384 | None:intergenic | 35.0% |
| !! | CCCAAAAGTGATTGGTTTAT+TGG | + | chr7.3:22177405-22177424 | None:intergenic | 35.0% |
| !!! | ATTGACTAGTTTTCCTACGT+TGG | + | chr7.3:22178639-22178658 | None:intergenic | 35.0% |
| !!! | GTTTCAGTTTTGAACTGGTA+TGG | - | chr7.3:22178888-22178907 | MS.gene055924:intron | 35.0% |
| !!! | TGTCAGTTTCAGTTTTGAAC+TGG | - | chr7.3:22178883-22178902 | MS.gene055924:intron | 35.0% |
| AAGGAATCAACGATAGCAGA+TGG | - | chr7.3:22177938-22177957 | MS.gene055924:intron | 40.0% | |
| ACAGATGTGAAGAAGTCTCA+AGG | - | chr7.3:22179097-22179116 | MS.gene055924:intron | 40.0% | |
| ACATTGGACCCAAAAGTGAT+TGG | + | chr7.3:22177413-22177432 | None:intergenic | 40.0% | |
| ACTTGCATAGAATCATGGGT+TGG | - | chr7.3:22178285-22178304 | MS.gene055924:intron | 40.0% | |
| ATCTGTTTAGAAGGCAGCAA+AGG | + | chr7.3:22179083-22179102 | None:intergenic | 40.0% | |
| ATTGTCAAAGTTCGTTGCCT+AGG | - | chr7.3:22179615-22179634 | MS.gene055924:intron | 40.0% | |
| GAACTTTGACAATTATGCCC+TGG | + | chr7.3:22179608-22179627 | None:intergenic | 40.0% | |
| GATTCTATGCAAGTCTATGG+AGG | + | chr7.3:22178279-22178298 | None:intergenic | 40.0% | |
| TAATGTGTACAGAATGTGGG+GGG | - | chr7.3:22179770-22179789 | MS.gene055924:CDS | 40.0% | |
| TATCAAATCTGCGCTAAGCT+AGG | + | chr7.3:22178046-22178065 | None:intergenic | 40.0% | |
| TCATGGATAGGATCAGTACT+CGG | + | chr7.3:22178702-22178721 | None:intergenic | 40.0% | |
| TCTTTGGCTGAGAAAGCTAT+TGG | - | chr7.3:22179486-22179505 | MS.gene055924:intron | 40.0% | |
| TGAGCTATTATAAGCGGTTG+TGG | - | chr7.3:22179243-22179262 | MS.gene055924:intron | 40.0% | |
| TGGGATGATAGATGCATCAA+CGG | + | chr7.3:22178437-22178456 | None:intergenic | 40.0% | |
| ! | CTCAATTATTTCTTCGGGGA+TGG | + | chr7.3:22179451-22179470 | None:intergenic | 40.0% |
| ! | CTTCTAGCTGCTCTTCTAAT+GGG | - | chr7.3:22177471-22177490 | MS.gene055924:intron | 40.0% |
| ! | GGTATGGTCTGGACATTTTA+GGG | - | chr7.3:22178904-22178923 | MS.gene055924:intron | 40.0% |
| ! | GTATGGTCTGGACATTTTAG+GGG | - | chr7.3:22178905-22178924 | MS.gene055924:intron | 40.0% |
| ! | TATGGTCTGGACATTTTAGG+GGG | - | chr7.3:22178906-22178925 | MS.gene055924:intron | 40.0% |
| ! | TCTTCAGATGGGTTCACATT+GGG | + | chr7.3:22178456-22178475 | None:intergenic | 40.0% |
| ! | TGGTATGGTCTGGACATTTT+AGG | - | chr7.3:22178903-22178922 | MS.gene055924:intron | 40.0% |
| ! | TTCTAGCTGCTCTTCTAATG+GGG | - | chr7.3:22177472-22177491 | MS.gene055924:intron | 40.0% |
| !!! | AGTTTTGAACTGGTATGGTC+TGG | - | chr7.3:22178893-22178912 | MS.gene055924:intron | 40.0% |
| AAAACAGTATGCAGTGCGGT+AGG | + | chr7.3:22178005-22178024 | None:intergenic | 45.0% | |
| ATATAGACCTGAACCTGCAC+AGG | + | chr7.3:22179565-22179584 | None:intergenic | 45.0% | |
| ATTGTTGCGCATGTAGGTTG+TGG | - | chr7.3:22179733-22179752 | MS.gene055924:CDS | 45.0% | |
| CAAGGTGCATGAGATTGAAC+AGG | + | chr7.3:22179653-22179672 | None:intergenic | 45.0% | |
| CAATGTGAACCCATCTGAAG+AGG | - | chr7.3:22178455-22178474 | MS.gene055924:intron | 45.0% | |
| CGTTGGAGCTAGATTCAGAT+TGG | + | chr7.3:22178622-22178641 | None:intergenic | 45.0% | |
| CTGGTTACTCAGGTCAGATA+TGG | - | chr7.3:22178751-22178770 | MS.gene055924:intron | 45.0% | |
| GAAGCCTGTTGGGTTATCTT+TGG | - | chr7.3:22179470-22179489 | MS.gene055924:intron | 45.0% | |
| TCAGCCAAAGATAACCCAAC+AGG | + | chr7.3:22179477-22179496 | None:intergenic | 45.0% | |
| TGAGTGGGTCTACAACATCA+TGG | - | chr7.3:22178316-22178335 | MS.gene055924:intron | 45.0% | |
| TGGCATGGCAATCAGTACAT+CGG | + | chr7.3:22179521-22179540 | None:intergenic | 45.0% | |
| TTGTTGCGCATGTAGGTTGT+GGG | - | chr7.3:22179734-22179753 | MS.gene055924:CDS | 45.0% | |
| ! | ACATTTGGGGTCATGTTCCT+CGG | - | chr7.3:22178977-22178996 | MS.gene055924:intron | 45.0% |
| ! | AGCTGCACCATTGTTGTTAG+AGG | + | chr7.3:22177453-22177472 | None:intergenic | 45.0% |
| ! | CTCTTCAGATGGGTTCACAT+TGG | + | chr7.3:22178457-22178476 | None:intergenic | 45.0% |
| ! | GACTCCATAATGGAAAGCCA+GGG | - | chr7.3:22179588-22179607 | MS.gene055924:intron | 45.0% |
| ! | GCTTCTAGCTGCTCTTCTAA+TGG | - | chr7.3:22177470-22177489 | MS.gene055924:intron | 45.0% |
| ! | TATGCCCTGGCTTTCCATTA+TGG | + | chr7.3:22179595-22179614 | None:intergenic | 45.0% |
| ! | TCTGAATCTAGCTCCAACGT+AGG | - | chr7.3:22178623-22178642 | MS.gene055924:intron | 45.0% |
| ! | TGACTCCATAATGGAAAGCC+AGG | - | chr7.3:22179587-22179606 | MS.gene055924:intron | 45.0% |
| !! | AAGCGGTTGTGGTCTTATGA+TGG | - | chr7.3:22179254-22179273 | MS.gene055924:intron | 45.0% |
| !! | TGCATAGAATCATGGGTTGG+AGG | - | chr7.3:22178288-22178307 | MS.gene055924:intron | 45.0% |
| !! | TGTACTGATTGCCATGCCAA+AGG | - | chr7.3:22179522-22179541 | MS.gene055924:intron | 45.0% |
| AACCTCAACCGTTGCAGAAC+TGG | - | chr7.3:22178408-22178427 | MS.gene055924:intron | 50.0% | |
| AACGGAACCCAGTTCTGCAA+CGG | + | chr7.3:22178419-22178438 | None:intergenic | 50.0% | |
| ACCTCAACCGTTGCAGAACT+GGG | - | chr7.3:22178409-22178428 | MS.gene055924:intron | 50.0% | |
| AGGTTCCAGCTCATCAAAGC+TGG | + | chr7.3:22178592-22178611 | None:intergenic | 50.0% | |
| GCATGGCAATCAGTACATCG+GGG | + | chr7.3:22179519-22179538 | None:intergenic | 50.0% | |
| GCTGGAGTCATTCACCTCAT+TGG | + | chr7.3:22178574-22178593 | None:intergenic | 50.0% | |
| GGCATGGCAATCAGTACATC+GGG | + | chr7.3:22179520-22179539 | None:intergenic | 50.0% | |
| GGGTTGGAGGAAGATTGAGT+GGG | - | chr7.3:22178301-22178320 | MS.gene055924:intron | 50.0% | |
| TGTTGCGCATGTAGGTTGTG+GGG | - | chr7.3:22179735-22179754 | MS.gene055924:CDS | 50.0% | |
| ! | AAAGCAAGGCACCTTTGGCA+TGG | + | chr7.3:22179536-22179555 | None:intergenic | 50.0% |
| ! | TGACTCCAGCTTTGATGAGC+TGG | - | chr7.3:22178584-22178603 | MS.gene055924:intron | 50.0% |
| ! | TGGGTTGGAGGAAGATTGAG+TGG | - | chr7.3:22178300-22178319 | MS.gene055924:intron | 50.0% |
| ACCCAGTTCTGCAACGGTTG+AGG | + | chr7.3:22178413-22178432 | None:intergenic | 55.0% | |
| CAGTACTCGGCACGCGAAAA+GGG | + | chr7.3:22178689-22178708 | None:intergenic | 55.0% | |
| CATGTAGGTTGTGGGGGAAC+TGG | - | chr7.3:22179742-22179761 | MS.gene055924:CDS | 55.0% | |
| GTTGCGCATGTAGGTTGTGG+GGG | - | chr7.3:22179736-22179755 | MS.gene055924:CDS | 55.0% | |
| TAGACCTGAACCTGCACAGG+TGG | + | chr7.3:22179562-22179581 | None:intergenic | 55.0% | |
| TCAGTACTCGGCACGCGAAA+AGG | + | chr7.3:22178690-22178709 | None:intergenic | 55.0% | |
| TGCACAGGTGGCACAAAGCA+AGG | + | chr7.3:22179550-22179569 | None:intergenic | 55.0% | |
| TTGCTTTGTGCCACCTGTGC+AGG | - | chr7.3:22179549-22179568 | MS.gene055924:intron | 55.0% | |
| ! | GGCACAAAGCAAGGCACCTT+TGG | + | chr7.3:22179541-22179560 | None:intergenic | 55.0% |
| ! | GGGGTCATGTTCCTCGGTTT+TGG | - | chr7.3:22178983-22179002 | MS.gene055924:intron | 55.0% |
| TGTACAGAATGTGGGGGGCG+AGG | - | chr7.3:22179775-22179794 | MS.gene055924:CDS | 60.0% | |
| TGTGCCACCTGTGCAGGTTC+AGG | - | chr7.3:22179555-22179574 | MS.gene055924:intron | 60.0% | |
| ATGTGGGGGGCGAGGTCATC+TGG | - | chr7.3:22179783-22179802 | MS.gene055924:CDS | 65.0% | |
| TGTGGGGGGCGAGGTCATCT+GGG | - | chr7.3:22179784-22179803 | MS.gene055924:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22177341 | 22179816 | 22177341 | ID=MS.gene055924 |
| chr7.3 | mRNA | 22177341 | 22179816 | 22177341 | ID=MS.gene055924.t1;Parent=MS.gene055924 |
| chr7.3 | exon | 22179664 | 22179816 | 22179664 | ID=MS.gene055924.t1.exon1;Parent=MS.gene055924.t1 |
| chr7.3 | CDS | 22179664 | 22179816 | 22179664 | ID=cds.MS.gene055924.t1;Parent=MS.gene055924.t1 |
| chr7.3 | exon | 22177521 | 22177782 | 22177521 | ID=MS.gene055924.t1.exon2;Parent=MS.gene055924.t1 |
| chr7.3 | CDS | 22177521 | 22177782 | 22177521 | ID=cds.MS.gene055924.t1;Parent=MS.gene055924.t1 |
| chr7.3 | exon | 22177341 | 22177408 | 22177341 | ID=MS.gene055924.t1.exon3;Parent=MS.gene055924.t1 |
| chr7.3 | CDS | 22177341 | 22177408 | 22177341 | ID=cds.MS.gene055924.t1;Parent=MS.gene055924.t1 |
| Gene Sequence |
| Protein sequence |
