AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78202

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78202.t1 MTR_0380s0040 97.931 145 3 0 1 145 1 145 1.12e-103 294
MS.gene78202.t1 MTR_4g130730 70.339 118 32 2 29 145 34 149 5.90e-53 166
MS.gene78202.t1 MTR_2g088390 50.649 77 31 3 1 74 1 73 1.28e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78202.t1 AT4G30620 77.228 101 23 0 45 145 38 138 2.95e-52 164
MS.gene78202.t1 AT2G24020 80.000 100 19 1 52 150 45 144 3.31e-51 161
MS.gene78202.t1 AT2G24020 80.000 100 19 1 52 150 43 142 3.75e-51 161

Find 28 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGTCAACTATATTTGAAT+TGG 0.310123 2.2:-32867283 None:intergenic
AAGTGATGATGCACCTTCTA+AGG 0.328196 2.2:+32867404 MS.gene78202:CDS
TACTGAGGCAGCTATGGAAT+TGG 0.347324 2.2:+32869347 MS.gene78202:CDS
TTAAGTTAGCTAACCTTAGA+AGG 0.356959 2.2:-32867417 None:intergenic
TTTCGATTATATGGCCTATT+CGG 0.364594 2.2:+32867363 MS.gene78202:CDS
TTTCTGTTCGTAAAGGTTGC+TGG 0.377077 2.2:-32869323 None:intergenic
CCTTCTTCACAGTCTCAAAC+AGG 0.391152 2.2:-32867914 None:intergenic
GAGAAGACTTACGGAGAGAA+AGG 0.405421 2.2:-32867070 None:intergenic
GTCTCTCTCTCAAACGCAAC+CGG 0.406208 2.2:+32867026 MS.gene78202:CDS
TAATGCAGGGCTGAGTTTGA+TGG 0.413015 2.2:+32868881 MS.gene78202:intron
TTTACAACCGTGACGACGAC+CGG 0.418943 2.2:-32867316 None:intergenic
GATTCTTAGGTAACTCTGTC+TGG 0.421055 2.2:+32869297 MS.gene78202:intron
AGAAATTACTGAGGCAGCTA+TGG 0.451947 2.2:+32869341 MS.gene78202:CDS
GCACCCTCACTGCTTCAACT+TGG 0.468386 2.2:-32867950 None:intergenic
GTGGAAGACAATGGCGTCAA+TGG 0.470497 2.2:+32867004 None:intergenic
ACTGAGGCAGCTATGGAATT+GGG 0.474312 2.2:+32869348 MS.gene78202:CDS
TCAGTAATTTCTGTTCGTAA+AGG 0.476342 2.2:-32869330 None:intergenic
CCTGTTTGAGACTGTGAAGA+AGG 0.505008 2.2:+32867914 MS.gene78202:CDS
GACTGTGAAGAAGGCACAAA+TGG 0.516544 2.2:+32867923 MS.gene78202:CDS
GAGTTTGATGGTTATTGTGA+GGG 0.531238 2.2:+32868893 MS.gene78202:CDS
CGATTATATGGCCTATTCGG+AGG 0.537306 2.2:+32867366 MS.gene78202:CDS
TTGTGAGGGTGAGTTAGTAA+AGG 0.541197 2.2:+32868907 MS.gene78202:CDS
AGAAGACTTACGGAGAGAAA+GGG 0.559614 2.2:-32867069 None:intergenic
GATTATATGGCCTATTCGGA+GGG 0.569725 2.2:+32867367 MS.gene78202:CDS
TGAGTTTGATGGTTATTGTG+AGG 0.595232 2.2:+32868892 MS.gene78202:CDS
TGTCCAAGTTGAAGCAGTGA+GGG 0.635122 2.2:+32867947 MS.gene78202:CDS
TTTACGAACAGAAATTACTG+AGG 0.691356 2.2:+32869332 MS.gene78202:CDS
TTGTCCAAGTTGAAGCAGTG+AGG 0.723662 2.2:+32867946 MS.gene78202:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATACAAAGAAAA+AGG - chr2.2:32867146-32867165 None:intergenic 10.0%
!! AAATTAAATACAAAGAAAAA+GGG - chr2.2:32867145-32867164 None:intergenic 10.0%
!! AAGTAAATAAAAATATGAAT+AGG + chr2.2:32868089-32868108 MS.gene78202:intron 10.0%
!! AGTAAATAAAAATATGAATA+GGG + chr2.2:32868090-32868109 MS.gene78202:intron 10.0%
!!! TTTACATTTTAAAGTTAAAA+GGG + chr2.2:32869014-32869033 MS.gene78202:intron 10.0%
!!! TTTTACATTTTAAAGTTAAA+AGG + chr2.2:32869013-32869032 MS.gene78202:intron 10.0%
!! AATTAAATACAAAGAAAAAG+GGG - chr2.2:32867144-32867163 None:intergenic 15.0%
!! ATATGTTAATTGAATGAAAT+AGG + chr2.2:32868260-32868279 MS.gene78202:intron 15.0%
!! TATAATAATGTATGATTCTT+AGG + chr2.2:32869284-32869303 MS.gene78202:intron 15.0%
!! TATGTTAATTGAATGAAATA+GGG + chr2.2:32868261-32868280 MS.gene78202:intron 15.0%
!!! ATCAATATTAGTCTAATAAT+TGG + chr2.2:32869233-32869252 MS.gene78202:intron 15.0%
!!! TTACATTTTAAAGTTAAAAG+GGG + chr2.2:32869015-32869034 MS.gene78202:intron 15.0%
!!! TTTTATACACATACAAATAA+AGG - chr2.2:32867651-32867670 None:intergenic 15.0%
!! ATAAGTTAGTAGTGTTAATT+AGG + chr2.2:32867692-32867711 MS.gene78202:intron 20.0%
!! CTGGAATAAACATAATAAAA+TGG - chr2.2:32868962-32868981 None:intergenic 20.0%
!! TAAGTTAGTAGTGTTAATTA+GGG + chr2.2:32867693-32867712 MS.gene78202:intron 20.0%
!!! ACTTGTATGATATTGATAAT+TGG + chr2.2:32867855-32867874 MS.gene78202:intron 20.0%
!!! ACTTTATTTGTATACTCATA+TGG + chr2.2:32869040-32869059 MS.gene78202:intron 20.0%
!!! ATGAGTAATAGTATTTTAGA+AGG - chr2.2:32868416-32868435 None:intergenic 20.0%
!!! ATTAGTCTAATAATTGGTAA+GGG + chr2.2:32869239-32869258 MS.gene78202:intron 20.0%
!!! ATTGATAATTGGATCATTTT+AGG + chr2.2:32867866-32867885 MS.gene78202:intron 20.0%
!!! CAAACAATTCAAACTTTTAT+TGG - chr2.2:32867238-32867257 None:intergenic 20.0%
!!! TACATTTTAAAGTTAAAAGG+GGG + chr2.2:32869016-32869035 MS.gene78202:intron 20.0%
!!! TATTAGTCTAATAATTGGTA+AGG + chr2.2:32869238-32869257 MS.gene78202:intron 20.0%
! AAAAAATGGAAAAGCTGTAA+TGG - chr2.2:32868014-32868033 None:intergenic 25.0%
! AAGTTAGTAGTGTTAATTAG+GGG + chr2.2:32867694-32867713 MS.gene78202:intron 25.0%
! AATAATAAGGAGGACATTAT+GGG - chr2.2:32868652-32868671 None:intergenic 25.0%
! AATTGTTTGTTTATGTATGC+AGG + chr2.2:32867249-32867268 MS.gene78202:intron 25.0%
! ACGATATAGTTGAATTAGAA+AGG - chr2.2:32868825-32868844 None:intergenic 25.0%
! CATACAAATAAAGGACAATT+TGG - chr2.2:32867642-32867661 None:intergenic 25.0%
! CATACGTAAATACTACTAAA+GGG + chr2.2:32868433-32868452 MS.gene78202:intron 25.0%
! CTAACTTAACGTGTATATAT+AGG + chr2.2:32867431-32867450 MS.gene78202:intron 25.0%
! GCATCTAGTAATTTGAAAAA+GGG + chr2.2:32867741-32867760 MS.gene78202:intron 25.0%
! GGACAAAAATAAAGTCAAAT+GGG + chr2.2:32867775-32867794 MS.gene78202:intron 25.0%
! GTATATATAGGATTAGGATT+AGG + chr2.2:32867443-32867462 MS.gene78202:intron 25.0%
! GTGTATTCAGGAAAAAAAAA+TGG - chr2.2:32868028-32868047 None:intergenic 25.0%
! TAAAACTAAAGAAAAGCCAA+AGG - chr2.2:32868998-32869017 None:intergenic 25.0%
! TAACGTGTATATATAGGATT+AGG + chr2.2:32867437-32867456 MS.gene78202:intron 25.0%
! TAACTGACTAACTAACATAA+GGG + chr2.2:32868135-32868154 MS.gene78202:intron 25.0%
! TAATAATAAGGAGGACATTA+TGG - chr2.2:32868653-32868672 None:intergenic 25.0%
! TCATACGTAAATACTACTAA+AGG + chr2.2:32868432-32868451 MS.gene78202:intron 25.0%
! TGAAAAAGGGTTTACATTTA+GGG + chr2.2:32867754-32867773 MS.gene78202:intron 25.0%
! TGCATCTAGTAATTTGAAAA+AGG + chr2.2:32867740-32867759 MS.gene78202:intron 25.0%
! TTGAAAAAGGGTTTACATTT+AGG + chr2.2:32867753-32867772 MS.gene78202:intron 25.0%
!! AGGTGTCTTATTAAACTATA+GGG - chr2.2:32868564-32868583 None:intergenic 25.0%
!! GATATTTTGTATACTTGATG+GGG + chr2.2:32869062-32869081 MS.gene78202:intron 25.0%
!! GGATATTTTGTATACTTGAT+GGG + chr2.2:32869061-32869080 MS.gene78202:intron 25.0%
!! TGGATATTTTGTATACTTGA+TGG + chr2.2:32869060-32869079 MS.gene78202:intron 25.0%
!! TTTTGTGATGTATGTTATTG+TGG + chr2.2:32868936-32868955 MS.gene78202:intron 25.0%
!!! ATTTTTGGTATGACATAATC+CGG - chr2.2:32867048-32867067 None:intergenic 25.0%
!!! TTCAAACTTTTATTGGCTTT+TGG - chr2.2:32867231-32867250 None:intergenic 25.0%
AAAATGTTTGCCAACTCTTT+GGG + chr2.2:32869168-32869187 MS.gene78202:intron 30.0%
AAGAAATGTGAAAAAGACGA+TGG - chr2.2:32867569-32867588 None:intergenic 30.0%
ACTTGCAGAAACAATGAAAA+CGG - chr2.2:32868792-32868811 None:intergenic 30.0%
AGAAATGTGAAAAAGACGAT+GGG - chr2.2:32867568-32867587 None:intergenic 30.0%
ATATAGAAAACCCAAAGAGT+TGG - chr2.2:32869181-32869200 None:intergenic 30.0%
CAAATGGGTGCTTAAATATA+GGG + chr2.2:32867790-32867809 MS.gene78202:intron 30.0%
CGTGTCAACTATATTTGAAT+TGG - chr2.2:32867286-32867305 None:intergenic 30.0%
CTAACTGACTAACTAACATA+AGG + chr2.2:32868134-32868153 MS.gene78202:intron 30.0%
GGGACAAAAATAAAGTCAAA+TGG + chr2.2:32867774-32867793 MS.gene78202:intron 30.0%
TATCCTAACATTGTGTATTC+AGG - chr2.2:32868040-32868059 None:intergenic 30.0%
TATGTTTATTCCAGCAGAAT+TGG + chr2.2:32868968-32868987 MS.gene78202:intron 30.0%
TCAAATGGGTGCTTAAATAT+AGG + chr2.2:32867789-32867808 MS.gene78202:intron 30.0%
TCAGTAATTTCTGTTCGTAA+AGG - chr2.2:32869333-32869352 None:intergenic 30.0%
TGATGAGAACGCTAATAATA+AGG - chr2.2:32868665-32868684 None:intergenic 30.0%
TTAAGTTAGCTAACCTTAGA+AGG - chr2.2:32867420-32867439 None:intergenic 30.0%
TTACTACTAAGGAATAAGTG+CGG + chr2.2:32868462-32868481 MS.gene78202:intron 30.0%
TTTACGAACAGAAATTACTG+AGG + chr2.2:32869332-32869351 MS.gene78202:CDS 30.0%
TTTCCTGAATACACAATGTT+AGG + chr2.2:32868034-32868053 MS.gene78202:intron 30.0%
TTTCGATTATATGGCCTATT+CGG + chr2.2:32867363-32867382 MS.gene78202:CDS 30.0%
! AGTTGTTCTGAATGAGATAT+TGG + chr2.2:32868848-32868867 MS.gene78202:intron 30.0%
! ATAACAGAATCATGTCACTT+CGG + chr2.2:32869095-32869114 MS.gene78202:intron 30.0%
! ATAATTGGATCATTTTAGGC+AGG + chr2.2:32867870-32867889 MS.gene78202:intron 30.0%
! CGAAGATGTTTTCGATTATA+TGG + chr2.2:32867354-32867373 MS.gene78202:CDS 30.0%
! GAGGTGTCTTATTAAACTAT+AGG - chr2.2:32868565-32868584 None:intergenic 30.0%
! GGCAAACATTTTCACATTAA+GGG - chr2.2:32869160-32869179 None:intergenic 30.0%
! TAGGATATGACTAGTTAAGA+AGG + chr2.2:32868053-32868072 MS.gene78202:intron 30.0%
! TGGCAAACATTTTCACATTA+AGG - chr2.2:32869161-32869180 None:intergenic 30.0%
! TGTTAATTAGGGGTATGTTT+AGG + chr2.2:32867704-32867723 MS.gene78202:intron 30.0%
!!! AACTTTTATTGGCTTTTGGA+AGG - chr2.2:32867227-32867246 None:intergenic 30.0%
AAGAAAAAGGGGAAGATTTG+TGG - chr2.2:32867133-32867152 None:intergenic 35.0%
AAGATATGGAGGGTTATGAA+AGG - chr2.2:32868622-32868641 None:intergenic 35.0%
AAGGGATAAGCTTACTACTA+AGG + chr2.2:32868451-32868470 MS.gene78202:intron 35.0%
AGTCTAATAATTGGTAAGGG+TGG + chr2.2:32869242-32869261 MS.gene78202:intron 35.0%
ATTGATCATGTGACCTTTAG+CGG + chr2.2:32868747-32868766 MS.gene78202:intron 35.0%
CAAACTCATAACCCAACATT+CGG - chr2.2:32867107-32867126 None:intergenic 35.0%
CTAACATAAGGGTCAAGATT+TGG + chr2.2:32868146-32868165 MS.gene78202:intron 35.0%
CTTGCAGAAACAATGAAAAC+GGG - chr2.2:32868791-32868810 None:intergenic 35.0%
GAAAATGTTTGCCAACTCTT+TGG + chr2.2:32869167-32869186 MS.gene78202:intron 35.0%
GTAGAAACCAATAGATCTGA+AGG + chr2.2:32868199-32868218 MS.gene78202:intron 35.0%
TCGTTAAAAACATCCGCTAA+AGG - chr2.2:32868763-32868782 None:intergenic 35.0%
TCTCATCACGAATTCTGTTT+GGG + chr2.2:32868677-32868696 MS.gene78202:intron 35.0%
TGAGAACGCTAATAATAAGG+AGG - chr2.2:32868662-32868681 None:intergenic 35.0%
TTCATAACCCTCCATATCTT+GGG + chr2.2:32868622-32868641 MS.gene78202:intron 35.0%
TTCTCATCACGAATTCTGTT+TGG + chr2.2:32868676-32868695 MS.gene78202:intron 35.0%
TTCTGAATGAGATATTGGTC+TGG + chr2.2:32868853-32868872 MS.gene78202:intron 35.0%
TTGATTACACTGACAGCTTA+TGG + chr2.2:32867485-32867504 MS.gene78202:intron 35.0%
TTTCATAACCCTCCATATCT+TGG + chr2.2:32868621-32868640 MS.gene78202:intron 35.0%
! AAACTATAGGGTGTCTAAGA+AGG - chr2.2:32868552-32868571 None:intergenic 35.0%
! AATTCTGTTTGGGATTGTTG+AGG + chr2.2:32868687-32868706 MS.gene78202:intron 35.0%
! ACAGATTGAGTTTTCTGTTC+AGG - chr2.2:32868389-32868408 None:intergenic 35.0%
! CAGATTGAGTTTTCTGTTCA+GGG - chr2.2:32868388-32868407 None:intergenic 35.0%
! GAGTTTGATGGTTATTGTGA+GGG + chr2.2:32868893-32868912 MS.gene78202:CDS 35.0%
! GTTGACACGAAGATATTTTC+CGG + chr2.2:32867297-32867316 MS.gene78202:CDS 35.0%
! TCATTTTAGGCAGGAATTCT+TGG + chr2.2:32867879-32867898 MS.gene78202:intron 35.0%
! TGAGTTTGATGGTTATTGTG+AGG + chr2.2:32868892-32868911 MS.gene78202:CDS 35.0%
! TGTTTAGCCTTCAGATCTAT+TGG - chr2.2:32868209-32868228 None:intergenic 35.0%
ACGATGGGTGACTACATTAA+GGG - chr2.2:32867553-32867572 None:intergenic 40.0%
AGAAATTACTGAGGCAGCTA+TGG + chr2.2:32869341-32869360 MS.gene78202:CDS 40.0%
AGAAGACTTACGGAGAGAAA+GGG - chr2.2:32867072-32867091 None:intergenic 40.0%
AGGAAAGACAAGAAGACTAG+TGG - chr2.2:32868602-32868621 None:intergenic 40.0%
CAAAGGTTAACCAATTCTGC+TGG - chr2.2:32868981-32869000 None:intergenic 40.0%
CAGCAGAATTGGTTAACCTT+TGG + chr2.2:32868979-32868998 MS.gene78202:intron 40.0%
CGTCACGGTTGTAAAAAAGT+TGG + chr2.2:32867324-32867343 MS.gene78202:CDS 40.0%
GAGAGAGAAGAGAAGACTTA+CGG - chr2.2:32867082-32867101 None:intergenic 40.0%
GAGTTGTTGAAGAAGCGAAT+TGG + chr2.2:32868177-32868196 MS.gene78202:intron 40.0%
GATTATATGGCCTATTCGGA+GGG + chr2.2:32867367-32867386 MS.gene78202:CDS 40.0%
GATTCTTAGGTAACTCTGTC+TGG + chr2.2:32869297-32869316 MS.gene78202:intron 40.0%
TGCTTAAATATAGGGACGGA+GGG + chr2.2:32867798-32867817 MS.gene78202:intron 40.0%
TGGGTGCTTAAATATAGGGA+CGG + chr2.2:32867794-32867813 MS.gene78202:intron 40.0%
TTATGGGAAGACCCAAGATA+TGG - chr2.2:32868636-32868655 None:intergenic 40.0%
TTCTCTCTCTTCCGAATGTT+GGG + chr2.2:32867093-32867112 MS.gene78202:intron 40.0%
TTGTGAGGGTGAGTTAGTAA+AGG + chr2.2:32868907-32868926 MS.gene78202:CDS 40.0%
TTTCTGTTCGTAAAGGTTGC+TGG - chr2.2:32869326-32869345 None:intergenic 40.0%
! AAGTGATGATGCACCTTCTA+AGG + chr2.2:32867404-32867423 MS.gene78202:CDS 40.0%
! AGGGTCAAGATTTGGAGTTT+AGG + chr2.2:32868154-32868173 MS.gene78202:intron 40.0%
! GGGTCAAGATTTGGAGTTTA+GGG + chr2.2:32868155-32868174 MS.gene78202:intron 40.0%
!! AGGTCGATTTTTGAATCGTG+TGG - chr2.2:32867207-32867226 None:intergenic 40.0%
!! TGGTCTGGTTCTATAATGCA+GGG + chr2.2:32868868-32868887 MS.gene78202:intron 40.0%
!! TTGGTCTGGTTCTATAATGC+AGG + chr2.2:32868867-32868886 MS.gene78202:intron 40.0%
!!! ACGGAGAGAAAGGGTATTTT+TGG - chr2.2:32867063-32867082 None:intergenic 40.0%
!!! CATCTTTTTTCCCTCCGAAT+AGG - chr2.2:32867380-32867399 None:intergenic 40.0%
ACTGAGGCAGCTATGGAATT+GGG + chr2.2:32869348-32869367 MS.gene78202:CDS 45.0%
AGTGGCTGAAGTTACTACTG+AGG - chr2.2:32868584-32868603 None:intergenic 45.0%
CAGAAAGAACTTGCAGCGTA+TGG + chr2.2:32867972-32867991 MS.gene78202:intron 45.0%
CCTTCTTCACAGTCTCAAAC+AGG - chr2.2:32867917-32867936 None:intergenic 45.0%
CGATTATATGGCCTATTCGG+AGG + chr2.2:32867366-32867385 MS.gene78202:CDS 45.0%
CTTAAATATAGGGACGGAGG+GGG + chr2.2:32867800-32867819 MS.gene78202:intron 45.0%
CTTCTCTCTCTTCCGAATGT+TGG + chr2.2:32867092-32867111 MS.gene78202:intron 45.0%
CTTGAATTAGCCCTAGAGCA+CGG + chr2.2:32868714-32868733 MS.gene78202:intron 45.0%
GAATAATGCACCGTGCTCTA+GGG - chr2.2:32868727-32868746 None:intergenic 45.0%
GACGATGGGTGACTACATTA+AGG - chr2.2:32867554-32867573 None:intergenic 45.0%
GAGAAGACTTACGGAGAGAA+AGG - chr2.2:32867073-32867092 None:intergenic 45.0%
GATTCCTCTCTGAGTTGTGT+CGG - chr2.2:32868356-32868375 None:intergenic 45.0%
GCTTAAATATAGGGACGGAG+GGG + chr2.2:32867799-32867818 MS.gene78202:intron 45.0%
GTGCTTAAATATAGGGACGG+AGG + chr2.2:32867797-32867816 MS.gene78202:intron 45.0%
TAATGCAGGGCTGAGTTTGA+TGG + chr2.2:32868881-32868900 MS.gene78202:intron 45.0%
TACTGAGGCAGCTATGGAAT+TGG + chr2.2:32869347-32869366 MS.gene78202:CDS 45.0%
TGAATAATGCACCGTGCTCT+AGG - chr2.2:32868728-32868747 None:intergenic 45.0%
TGACTACATTAAGGGACGGA+GGG - chr2.2:32867545-32867564 None:intergenic 45.0%
TGGGTGACTACATTAAGGGA+CGG - chr2.2:32867549-32867568 None:intergenic 45.0%
! ATATTTTCCGGTCGTCGTCA+CGG + chr2.2:32867309-32867328 MS.gene78202:CDS 45.0%
! CCTGTTTGAGACTGTGAAGA+AGG + chr2.2:32867914-32867933 MS.gene78202:CDS 45.0%
! GACTGTGAAGAAGGCACAAA+TGG + chr2.2:32867923-32867942 MS.gene78202:CDS 45.0%
! TGTCCAAGTTGAAGCAGTGA+GGG + chr2.2:32867947-32867966 MS.gene78202:CDS 45.0%
! TTGTCCAAGTTGAAGCAGTG+AGG + chr2.2:32867946-32867965 MS.gene78202:CDS 45.0%
CTCAGAGAGGAATCCTACTC+TGG + chr2.2:32868362-32868381 MS.gene78202:intron 50.0%
GGGAAGACCCAAGATATGGA+GGG - chr2.2:32868632-32868651 None:intergenic 50.0%
GTCTCTCTCTCAAACGCAAC+CGG + chr2.2:32867026-32867045 MS.gene78202:CDS 50.0%
GTGACTACATTAAGGGACGG+AGG - chr2.2:32867546-32867565 None:intergenic 50.0%
TGGGAAGACCCAAGATATGG+AGG - chr2.2:32868633-32868652 None:intergenic 50.0%
TTTACAACCGTGACGACGAC+CGG - chr2.2:32867319-32867338 None:intergenic 50.0%
TTTCTGTTCAGGGCCAGAGT+AGG - chr2.2:32868378-32868397 None:intergenic 50.0%
! GGAGGGGGTATATTGTTGGT+TGG + chr2.2:32867815-32867834 MS.gene78202:intron 50.0%
AGCTCCGACACAACTCAGAG+AGG + chr2.2:32868349-32868368 MS.gene78202:intron 55.0%
GCACCCTCACTGCTTCAACT+TGG - chr2.2:32867953-32867972 None:intergenic 55.0%
! GGACGGAGGGGGTATATTGT+TGG + chr2.2:32867811-32867830 MS.gene78202:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 32867014 32869398 32867014 ID=MS.gene78202
chr2.2 mRNA 32867014 32869398 32867014 ID=MS.gene78202.t1;Parent=MS.gene78202
chr2.2 exon 32867014 32867080 32867014 ID=MS.gene78202.t1.exon1;Parent=MS.gene78202.t1
chr2.2 CDS 32867014 32867080 32867014 ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2 exon 32867271 32867425 32867271 ID=MS.gene78202.t1.exon2;Parent=MS.gene78202.t1
chr2.2 CDS 32867271 32867425 32867271 ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2 exon 32867888 32867988 32867888 ID=MS.gene78202.t1.exon3;Parent=MS.gene78202.t1
chr2.2 CDS 32867888 32867988 32867888 ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2 exon 32868889 32868928 32868889 ID=MS.gene78202.t1.exon4;Parent=MS.gene78202.t1
chr2.2 CDS 32868889 32868928 32868889 ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2 exon 32869306 32869398 32869306 ID=MS.gene78202.t1.exon5;Parent=MS.gene78202.t1
chr2.2 CDS 32869306 32869398 32869306 ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
Gene Sequence

>MS.gene78202

ATGGCGTCAATGGTCTCTCTCTCAAACGCAACCGGATTATGTCATACCAAAAATACCCTTTCTCTCCGTAAGTCTTCTCTTCTCTCTCTTCCGAATGTTGGGTTATGAGTTTGCTTCCACAAATCTTCCCCTTTTTCTTTGTATTTAATTTTGAAATTATTTATTTATTTATTTTCAACTTACACAAAAACCACACGATTCAAAAATCGACCTTCCAAAAGCCAATAAAAGTTTGAATTGTTTGTTTATGTATGCAGGTAAACTGAACTCCAATTCAAATATAGTTGACACGAAGATATTTTCCGGTCGTCGTCACGGTTGTAAAAAAGTTGGAGATGAACGAAGATGTTTTCGATTATATGGCCTATTCGGAGGGAAAAAAGATGAGAAAAGTGATGATGCACCTTCTAAGGTTAGCTAACTTAACGTGTATATATAGGATTAGGATTAGGATTACACATTTTCGATTAGTTGATTACACTGACAGCTTATGGCTGTCTACATCGAAGAAGAAGACTACAATGTACTCCCTCCGTCCCTTAATGTAGTCACCCATCGTCTTTTTCACATTTCTTAAGTAAAGTTGTTAGTGTAATTAATGTGTCTGTTTTGTGTGTTAATATTACCAAATTGTCCTTTATTTGTATGTGTATAAAATTTGACTTTTCATATTTCAAGATAAGTTAGTAGTGTTAATTAGGGGTATGTTTAGGAAAAAATAATAAATGCATCTAGTAATTTGAAAAAGGGTTTACATTTAGGGACAAAAATAAAGTCAAATGGGTGCTTAAATATAGGGACGGAGGGGGTATATTGTTGGTTGGTTTTGTGCGTTTTGCTGACTTGTATGATATTGATAATTGGATCATTTTAGGCAGGAATTCTTGGAAACATGCAAAACCTGTTTGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGAGGGTGCAGAAAGAACTTGCAGCGTATGGTTGTCTCTTTATTAAGCCATTACAGCTTTTCCATTTTTTTTTCCTGAATACACAATGTTAGGATATGACTAGTTAAGAAGGTATATTTGAGAATAAGTAAATAAAAATATGAATAGGGAGAAAACTGACACGACTGTAACTAACTGACTAACTAACATAAGGGTCAAGATTTGGAGTTTAGGGAGTTGTTGAAGAAGCGAATTGGTAGAAACCAATAGATCTGAAGGCTAAACAACTGTAACACAACAAAATAAAAAACGAGAACATATGTTAATTGAATGAAATAGGGTGCTTTATTGATATGAATGAAATTAGTAAAATAGTAGAAGATAGAGTTTCTCTAACTACGTGCAAAGCTCCGACACAACTCAGAGAGGAATCCTACTCTGGCCCTGAACAGAAAACTCAATCTGTCATGCCTTCTAAAATACTATTACTCATACGTAAATACTACTAAAGGGATAAGCTTACTACTAAGGAATAAGTGCGGATAACATCTTTCTAGAAGATATTATTCAGAGAGTATCGTTATTAAATAATACTAATAAAATATTCCTTCTTAGACACCCTATAGTTTAATAAGACACCTCAGTAGTAACTTCAGCCACTAGTCTTCTTGTCTTTCCTTTCATAACCCTCCATATCTTGGGTCTTCCCATAATGTCCTCCTTATTATTAGCGTTCTCATCACGAATTCTGTTTGGGATTGTTGAGGTACTCTTGAATTAGCCCTAGAGCACGGTGCATTATTCATTGATCATGTGACCTTTAGCGGATGTTTTTAACGAAAATTCCCGTTTTCATTGTTTCTGCAAGTTGTTCTATTTCCTTTCTAATTCAACTATATCGTACAAGTTGTTCTGAATGAGATATTGGTCTGGTTCTATAATGCAGGGCTGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTAAAGGTATGATTTTTGTGATGTATGTTATTGTGGCCATTTTATTATGTTTATTCCAGCAGAATTGGTTAACCTTTGGCTTTTCTTTAGTTTTACATTTTAAAGTTAAAAGGGGGAACTTTATTTGTATACTCATATGGATATTTTGTATACTTGATGGGGTTTATAAATTATAACAGAATCATGTCACTTCGGTAAAAAAAAAAAAAACTGAATGATTTCACTGTTTAGTTGCCCTTAATGTGAAAATGTTTGCCAACTCTTTGGGTTTTCTATATGTATTTATTATCGCAATTTAGTGAATTACATTATCAATATTAGTCTAATAATTGGTAAGGGTGGTTTTGTTTGTTATCTTATTTATAATAATGTATGATTCTTAGGTAACTCTGTCTGGAAACCAGCAACCTTTACGAACAGAAATTACTGAGGCAGCTATGGAATTGGGATCAGAAGTAAGTAAACAATTGAACTGA
Protein sequence

>MS.gene78202.t1

MASMVSLSNATGLCHTKNTLSLRKLNSNSNIVDTKIFSGRRHGCKKVGDERRCFRLYGLFGGKKDEKSDDAPSKAGILGNMQNLFETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMELGSEVSKQLN