AlfalfaGEDB | MS.gene78202

M. sativa cultivar XinJiangDaYe / MS.gene78202

KEGG: -
GO: -
PFAM: PF02575.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78202.t1	XP_013441989.1	97.9	145	3	0	1	145	1	145	5.40E-71	276.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78202.t1	Q9M098	77.2	101	23	0	45	145	38	138	5.7e-37	155.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78202.t1	A0A072TEN7	97.9	145	3	0	1	145	1	145	3.9e-71	276.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene78202	0.803881	2.82E-49	-1.69E-46
MS.gene049151	MS.gene78202	0.815315	9.85E-52	-1.69E-46
MS.gene049153	MS.gene78202	0.805051	1.61E-49	-1.69E-46
MS.gene049230	MS.gene78202	0.809262	2.06E-50	-1.69E-46
MS.gene049260	MS.gene78202	0.800424	1.45E-48	-1.69E-46
MS.gene049297	MS.gene78202	0.813594	2.36E-51	-1.69E-46
MS.gene049378	MS.gene78202	0.865241	6.81E-65	-1.69E-46
MS.gene049599	MS.gene78202	-0.801117	1.05E-48	-1.69E-46
MS.gene049758	MS.gene78202	0.874025	9.32E-68	-1.69E-46
MS.gene049910	MS.gene78202	0.838849	2.25E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78202.t1	MTR_0380s0040	97.931	145	3	0	1	145	1	145	1.12e-103	294
MS.gene78202.t1	MTR_4g130730	70.339	118	32	2	29	145	34	149	5.90e-53	166
MS.gene78202.t1	MTR_2g088390	50.649	77	31	3	1	74	1	73	1.28e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78202.t1	AT4G30620	77.228	101	23	0	45	145	38	138	2.95e-52	164
MS.gene78202.t1	AT2G24020	80.000	100	19	1	52	150	45	144	3.31e-51	161
MS.gene78202.t1	AT2G24020	80.000	100	19	1	52	150	43	142	3.75e-51	161

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Find 28 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTGATGATGCACCTTCTA+AGG	0.328196	2.2:+32867404	MS.gene78202:CDS
ACTGAGGCAGCTATGGAATT+GGG	0.474312	2.2:+32869348	MS.gene78202:CDS
AGAAATTACTGAGGCAGCTA+TGG	0.451947	2.2:+32869341	MS.gene78202:CDS
AGAAGACTTACGGAGAGAAA+GGG	0.559614	2.2:-32867069	None:intergenic
CCTGTTTGAGACTGTGAAGA+AGG	0.505008	2.2:+32867914	MS.gene78202:CDS
CCTTCTTCACAGTCTCAAAC+AGG	0.391152	2.2:-32867914	None:intergenic
CGATTATATGGCCTATTCGG+AGG	0.537306	2.2:+32867366	MS.gene78202:CDS
CGTGTCAACTATATTTGAAT+TGG	0.310123	2.2:-32867283	None:intergenic
GACTGTGAAGAAGGCACAAA+TGG	0.516544	2.2:+32867923	MS.gene78202:CDS
GAGAAGACTTACGGAGAGAA+AGG	0.405421	2.2:-32867070	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTTTGCCAACTCTTT+GGG	+	chr2.2:32869168-32869187	MS.gene78202:intron	30.0%
AAGAAATGTGAAAAAGACGA+TGG	-	chr2.2:32867569-32867588	None:intergenic	30.0%
ACTTGCAGAAACAATGAAAA+CGG	-	chr2.2:32868792-32868811	None:intergenic	30.0%
AGAAATGTGAAAAAGACGAT+GGG	-	chr2.2:32867568-32867587	None:intergenic	30.0%
ATATAGAAAACCCAAAGAGT+TGG	-	chr2.2:32869181-32869200	None:intergenic	30.0%
CAAATGGGTGCTTAAATATA+GGG	+	chr2.2:32867790-32867809	MS.gene78202:intron	30.0%
CGTGTCAACTATATTTGAAT+TGG	-	chr2.2:32867286-32867305	None:intergenic	30.0%
CTAACTGACTAACTAACATA+AGG	+	chr2.2:32868134-32868153	MS.gene78202:intron	30.0%
GGGACAAAAATAAAGTCAAA+TGG	+	chr2.2:32867774-32867793	MS.gene78202:intron	30.0%
TATCCTAACATTGTGTATTC+AGG	-	chr2.2:32868040-32868059	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	32867014	32869398	32867014	ID=MS.gene78202
chr2.2	mRNA	32867014	32869398	32867014	ID=MS.gene78202.t1;Parent=MS.gene78202
chr2.2	exon	32867014	32867080	32867014	ID=MS.gene78202.t1.exon1;Parent=MS.gene78202.t1
chr2.2	CDS	32867014	32867080	32867014	ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2	exon	32867271	32867425	32867271	ID=MS.gene78202.t1.exon2;Parent=MS.gene78202.t1
chr2.2	CDS	32867271	32867425	32867271	ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2	exon	32867888	32867988	32867888	ID=MS.gene78202.t1.exon3;Parent=MS.gene78202.t1
chr2.2	CDS	32867888	32867988	32867888	ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2	exon	32868889	32868928	32868889	ID=MS.gene78202.t1.exon4;Parent=MS.gene78202.t1
chr2.2	CDS	32868889	32868928	32868889	ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1
chr2.2	exon	32869306	32869398	32869306	ID=MS.gene78202.t1.exon5;Parent=MS.gene78202.t1
chr2.2	CDS	32869306	32869398	32869306	ID=cds.MS.gene78202.t1;Parent=MS.gene78202.t1

Gene Sequence

>MS.gene78202

ATGGCGTCAATGGTCTCTCTCTCAAACGCAACCGGATTATGTCATACCAAAAATACCCTTTCTCTCCGTAAGTCTTCTCTTCTCTCTCTTCCGAATGTTGGGTTATGAGTTTGCTTCCACAAATCTTCCCCTTTTTCTTTGTATTTAATTTTGAAATTATTTATTTATTTATTTTCAACTTACACAAAAACCACACGATTCAAAAATCGACCTTCCAAAAGCCAATAAAAGTTTGAATTGTTTGTTTATGTATGCAGGTAAACTGAACTCCAATTCAAATATAGTTGACACGAAGATATTTTCCGGTCGTCGTCACGGTTGTAAAAAAGTTGGAGATGAACGAAGATGTTTTCGATTATATGGCCTATTCGGAGGGAAAAAAGATGAGAAAAGTGATGATGCACCTTCTAAGGTTAGCTAACTTAACGTGTATATATAGGATTAGGATTAGGATTACACATTTTCGATTAGTTGATTACACTGACAGCTTATGGCTGTCTACATCGAAGAAGAAGACTACAATGTACTCCCTCCGTCCCTTAATGTAGTCACCCATCGTCTTTTTCACATTTCTTAAGTAAAGTTGTTAGTGTAATTAATGTGTCTGTTTTGTGTGTTAATATTACCAAATTGTCCTTTATTTGTATGTGTATAAAATTTGACTTTTCATATTTCAAGATAAGTTAGTAGTGTTAATTAGGGGTATGTTTAGGAAAAAATAATAAATGCATCTAGTAATTTGAAAAAGGGTTTACATTTAGGGACAAAAATAAAGTCAAATGGGTGCTTAAATATAGGGACGGAGGGGGTATATTGTTGGTTGGTTTTGTGCGTTTTGCTGACTTGTATGATATTGATAATTGGATCATTTTAGGCAGGAATTCTTGGAAACATGCAAAACCTGTTTGAGACTGTGAAGAAGGCACAAATGGTTGTCCAAGTTGAAGCAGTGAGGGTGCAGAAAGAACTTGCAGCGTATGGTTGTCTCTTTATTAAGCCATTACAGCTTTTCCATTTTTTTTTCCTGAATACACAATGTTAGGATATGACTAGTTAAGAAGGTATATTTGAGAATAAGTAAATAAAAATATGAATAGGGAGAAAACTGACACGACTGTAACTAACTGACTAACTAACATAAGGGTCAAGATTTGGAGTTTAGGGAGTTGTTGAAGAAGCGAATTGGTAGAAACCAATAGATCTGAAGGCTAAACAACTGTAACACAACAAAATAAAAAACGAGAACATATGTTAATTGAATGAAATAGGGTGCTTTATTGATATGAATGAAATTAGTAAAATAGTAGAAGATAGAGTTTCTCTAACTACGTGCAAAGCTCCGACACAACTCAGAGAGGAATCCTACTCTGGCCCTGAACAGAAAACTCAATCTGTCATGCCTTCTAAAATACTATTACTCATACGTAAATACTACTAAAGGGATAAGCTTACTACTAAGGAATAAGTGCGGATAACATCTTTCTAGAAGATATTATTCAGAGAGTATCGTTATTAAATAATACTAATAAAATATTCCTTCTTAGACACCCTATAGTTTAATAAGACACCTCAGTAGTAACTTCAGCCACTAGTCTTCTTGTCTTTCCTTTCATAACCCTCCATATCTTGGGTCTTCCCATAATGTCCTCCTTATTATTAGCGTTCTCATCACGAATTCTGTTTGGGATTGTTGAGGTACTCTTGAATTAGCCCTAGAGCACGGTGCATTATTCATTGATCATGTGACCTTTAGCGGATGTTTTTAACGAAAATTCCCGTTTTCATTGTTTCTGCAAGTTGTTCTATTTCCTTTCTAATTCAACTATATCGTACAAGTTGTTCTGAATGAGATATTGGTCTGGTTCTATAATGCAGGGCTGAGTTTGATGGTTATTGTGAGGGTGAGTTAGTAAAGGTATGATTTTTGTGATGTATGTTATTGTGGCCATTTTATTATGTTTATTCCAGCAGAATTGGTTAACCTTTGGCTTTTCTTTAGTTTTACATTTTAAAGTTAAAAGGGGGAACTTTATTTGTATACTCATATGGATATTTTGTATACTTGATGGGGTTTATAAATTATAACAGAATCATGTCACTTCGGTAAAAAAAAAAAAAACTGAATGATTTCACTGTTTAGTTGCCCTTAATGTGAAAATGTTTGCCAACTCTTTGGGTTTTCTATATGTATTTATTATCGCAATTTAGTGAATTACATTATCAATATTAGTCTAATAATTGGTAAGGGTGGTTTTGTTTGTTATCTTATTTATAATAATGTATGATTCTTAGGTAACTCTGTCTGGAAACCAGCAACCTTTACGAACAGAAATTACTGAGGCAGCTATGGAATTGGGATCAGAAGTAAGTAAACAATTGAACTGA

Protein sequence

>MS.gene78202.t1

MASMVSLSNATGLCHTKNTLSLRKLNSNSNIVDTKIFSGRRHGCKKVGDERRCFRLYGLFGGKKDEKSDDAPSKAGILGNMQNLFETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELVKVTLSGNQQPLRTEITEAAMELGSEVSKQLN