Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056299.t1 | XP_024628090.1 | 94 | 348 | 20 | 1 | 1 | 347 | 1 | 348 | 2.00E-180 | 641.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056299.t1 | Q9FLC2 | 52.0 | 331 | 152 | 2 | 1 | 331 | 1 | 324 | 9.1e-94 | 345.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056299.t1 | A0A396JYI3 | 94.0 | 348 | 20 | 1 | 1 | 347 | 1 | 348 | 1.4e-180 | 641.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051366 | MS.gene056299 | 0.801238 | 9.89E-49 | -1.69E-46 |
MS.gene055204 | MS.gene056299 | 0.821817 | 3.30E-53 | -1.69E-46 |
MS.gene055634 | MS.gene056299 | -0.829177 | 5.96E-55 | -1.69E-46 |
MS.gene056299 | MS.gene065013 | 0.942324 | 8.79E-102 | -1.69E-46 |
MS.gene056299 | MS.gene07361 | 0.8022 | 6.28E-49 | -1.69E-46 |
MS.gene056299 | MS.gene07362 | 0.803014 | 4.27E-49 | -1.69E-46 |
MS.gene056299 | MS.gene24726 | -0.80679 | 6.93E-50 | -1.69E-46 |
MS.gene056299 | MS.gene25379 | 0.815336 | 9.74E-52 | -1.69E-46 |
MS.gene056299 | MS.gene29374 | -0.802582 | 5.24E-49 | -1.69E-46 |
MS.gene056299 | MS.gene63175 | 0.802463 | 5.55E-49 | -1.69E-46 |
MS.gene056299 | MS.gene66360 | 0.810663 | 1.03E-50 | -1.69E-46 |
MS.gene056299 | MS.gene89322 | 0.808221 | 3.45E-50 | -1.69E-46 |
MS.gene056299 | MS.gene92272 | 0.814672 | 1.37E-51 | -1.69E-46 |
MS.gene056299 | MS.gene99191 | 0.815456 | 9.16E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056299.t1 | MTR_1g112780 | 94.937 | 316 | 16 | 0 | 13 | 328 | 401 | 716 | 0.0 | 606 |
MS.gene056299.t1 | MTR_1g112780 | 77.709 | 323 | 68 | 2 | 6 | 328 | 9 | 327 | 0.0 | 527 |
MS.gene056299.t1 | MTR_1g112740 | 89.815 | 324 | 30 | 1 | 5 | 328 | 1 | 321 | 0.0 | 590 |
MS.gene056299.t1 | MTR_1g090667 | 80.747 | 348 | 63 | 2 | 1 | 347 | 1 | 345 | 0.0 | 563 |
MS.gene056299.t1 | MTR_1g112750 | 80.243 | 329 | 61 | 2 | 1 | 328 | 1 | 326 | 0.0 | 522 |
MS.gene056299.t1 | MTR_5g013260 | 40.286 | 350 | 202 | 5 | 4 | 352 | 41 | 384 | 4.07e-82 | 256 |
MS.gene056299.t1 | MTR_5g013250 | 38.746 | 351 | 207 | 5 | 3 | 352 | 36 | 379 | 4.22e-80 | 251 |
MS.gene056299.t1 | MTR_4g035655 | 40.367 | 327 | 180 | 7 | 6 | 326 | 481 | 798 | 8.67e-69 | 231 |
MS.gene056299.t1 | MTR_4g035655 | 39.091 | 330 | 190 | 5 | 1 | 326 | 1 | 323 | 6.23e-68 | 229 |
MS.gene056299.t1 | MTR_5g017350 | 26.957 | 345 | 216 | 12 | 9 | 334 | 78 | 405 | 3.75e-15 | 77.0 |
MS.gene056299.t1 | MTR_5g017350 | 26.957 | 345 | 216 | 12 | 9 | 334 | 78 | 405 | 6.84e-15 | 75.9 |
MS.gene056299.t1 | MTR_5g017350 | 27.035 | 344 | 215 | 12 | 9 | 333 | 78 | 404 | 6.99e-15 | 76.3 |
MS.gene056299.t1 | MTR_5g017350 | 26.957 | 345 | 216 | 12 | 9 | 334 | 78 | 405 | 1.06e-14 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056299.t1 | AT5G05320 | 51.429 | 350 | 160 | 3 | 1 | 347 | 1 | 343 | 2.26e-122 | 358 |
MS.gene056299.t1 | AT4G38540 | 52.422 | 351 | 157 | 3 | 1 | 347 | 1 | 345 | 3.40e-111 | 330 |
MS.gene056299.t1 | AT2G35660 | 41.975 | 324 | 182 | 4 | 6 | 328 | 44 | 362 | 1.45e-78 | 248 |
MS.gene056299.t1 | AT2G29720 | 39.403 | 335 | 195 | 5 | 19 | 352 | 55 | 382 | 6.47e-73 | 233 |
MS.gene056299.t1 | AT4G15760 | 35.207 | 338 | 210 | 3 | 17 | 347 | 39 | 374 | 4.71e-61 | 202 |
MS.gene056299.t1 | AT4G15760 | 35.736 | 333 | 203 | 3 | 17 | 347 | 39 | 362 | 4.95e-61 | 201 |
MS.gene056299.t1 | AT2G35660 | 39.592 | 245 | 143 | 3 | 85 | 328 | 8 | 248 | 3.98e-52 | 176 |
MS.gene056299.t1 | AT2G35660 | 39.592 | 245 | 143 | 3 | 85 | 328 | 8 | 248 | 3.98e-52 | 176 |
MS.gene056299.t1 | AT4G15765 | 31.683 | 303 | 163 | 6 | 6 | 306 | 3 | 263 | 1.18e-38 | 139 |
MS.gene056299.t1 | AT4G15765 | 28.261 | 184 | 131 | 1 | 123 | 306 | 8 | 190 | 2.73e-23 | 96.3 |
MS.gene056299.t1 | AT4G15765 | 28.261 | 184 | 131 | 1 | 123 | 306 | 8 | 190 | 2.73e-23 | 96.3 |
MS.gene056299.t1 | AT4G15765 | 28.261 | 184 | 131 | 1 | 123 | 306 | 8 | 190 | 2.73e-23 | 96.3 |
MS.gene056299.t1 | AT4G15765 | 28.261 | 184 | 131 | 1 | 123 | 306 | 8 | 190 | 2.73e-23 | 96.3 |
MS.gene056299.t1 | AT5G67030 | 26.613 | 372 | 240 | 14 | 2 | 352 | 72 | 431 | 5.62e-18 | 85.5 |
MS.gene056299.t1 | AT5G67030 | 27.536 | 345 | 220 | 13 | 2 | 328 | 72 | 404 | 9.00e-18 | 85.1 |
Find 95 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCAAAGGTTGTTGCTATTC+AGG | 0.183324 | 1.3:-76548211 | MS.gene056299:CDS |
TGTGACTACTTCTTTGGTTA+TGG | 0.241431 | 1.3:-76548541 | MS.gene056299:CDS |
TCAGGAAAGTGGTTCAAAAT+TGG | 0.273076 | 1.3:-76547108 | MS.gene056299:intron |
CAGGAATGTGACTACTTCTT+TGG | 0.280000 | 1.3:-76548547 | MS.gene056299:CDS |
ATGAAATGTTTAACATCATT+TGG | 0.309078 | 1.3:+76547464 | None:intergenic |
TATTATTCACCTTGGTTGAT+AGG | 0.315579 | 1.3:+76547828 | None:intergenic |
CAGATTGGGCATTGAAAGTT+TGG | 0.318004 | 1.3:-76548919 | MS.gene056299:CDS |
AAAGGCAATGTTTGTGTTGC+TGG | 0.327124 | 1.3:-76547359 | MS.gene056299:CDS |
TCAGATAGTTTGAGAGTTAG+TGG | 0.330201 | 1.3:-76548885 | MS.gene056299:CDS |
ACATCCTTGGGAGCTAATAA+TGG | 0.330779 | 1.3:-76547393 | MS.gene056299:CDS |
GTTGTTGCTATTCAGGAATC+TGG | 0.332949 | 1.3:-76548204 | MS.gene056299:CDS |
GTGACTACTTCTTTGGTTAT+GGG | 0.339346 | 1.3:-76548540 | MS.gene056299:CDS |
TGGCCAAGATCAGGCATCAT+AGG | 0.366278 | 1.3:+76547323 | None:intergenic |
GTGATGACAAGGGTGTTTAT+TGG | 0.366836 | 1.3:-76547866 | MS.gene056299:CDS |
ATTGTAGGAGCTGGAATTGC+TGG | 0.368049 | 1.3:-76549767 | MS.gene056299:CDS |
CACCCTATGATGCCTGATCT+TGG | 0.380927 | 1.3:-76547326 | MS.gene056299:CDS |
GCCCGTGAAGTTCGGTGTAT+TGG | 0.387505 | 1.3:-76548294 | MS.gene056299:CDS |
AAAATACTACATCTTGTTGA+TGG | 0.405138 | 1.3:-76548174 | MS.gene056299:CDS |
CACCAACATCTACAACTTCA+TGG | 0.407357 | 1.3:-76548792 | MS.gene056299:CDS |
GTGGATTTGCTTTAACGGTA+TGG | 0.414647 | 1.3:-76548866 | MS.gene056299:CDS |
TGCTGGCCTCACAACATCCT+TGG | 0.420337 | 1.3:-76549750 | MS.gene056299:CDS |
TTTGTGGAAAAGGTATTGAT+TGG | 0.432300 | 1.3:-76548056 | MS.gene056299:intron |
CATCCTTGGGAGCTAATAAT+GGG | 0.433653 | 1.3:-76547392 | MS.gene056299:CDS |
TTCAACGAAGCCTCATACAC+AGG | 0.443232 | 1.3:-76547993 | MS.gene056299:CDS |
AGTTAGTGGATTTGCTTTAA+CGG | 0.446543 | 1.3:-76548871 | MS.gene056299:CDS |
AAGAAGAAGAAGAATACAAA+AGG | 0.451857 | 1.3:-76547217 | MS.gene056299:CDS |
TGCATATCTCCCTGTGTATG+AGG | 0.452906 | 1.3:+76547983 | None:intergenic |
CCAATGTTCATGCAGTACTT+TGG | 0.458036 | 1.3:-76547918 | MS.gene056299:CDS |
CATTGAGACATAGACATCCT+TGG | 0.463494 | 1.3:-76547406 | MS.gene056299:CDS |
AACCTTTGACATGTACCTAA+TGG | 0.465605 | 1.3:+76548224 | None:intergenic |
GCTGGCCTCACAACATCCTT+GGG | 0.467311 | 1.3:-76549749 | MS.gene056299:CDS |
TGGATTTGCTTTAACGGTAT+GGG | 0.467915 | 1.3:-76548865 | MS.gene056299:CDS |
CACCCTCCTTGGCCAAGATC+AGG | 0.471352 | 1.3:+76547314 | None:intergenic |
GTTGTAGATGTTGGTGGCGG+AGG | 0.473299 | 1.3:+76548799 | None:intergenic |
ATTGAGACATAGACATCCTT+GGG | 0.475914 | 1.3:-76547405 | MS.gene056299:CDS |
TAACGGTATGGGAAAATGCT+TGG | 0.477745 | 1.3:-76548854 | MS.gene056299:CDS |
AGCTTCCTAGTGGCACCATT+AGG | 0.478225 | 1.3:-76548239 | MS.gene056299:CDS |
ATAGTGGAGCCCGTGAAGTT+CGG | 0.480346 | 1.3:-76548302 | MS.gene056299:intron |
GGGTGTTGTGCATTAGAAGA+TGG | 0.480761 | 1.3:-76547296 | MS.gene056299:CDS |
CTAATGCACAACACCCTCCT+TGG | 0.481132 | 1.3:+76547303 | None:intergenic |
GGTGTTGTGCATTAGAAGAT+GGG | 0.481605 | 1.3:-76547295 | MS.gene056299:CDS |
GATATTGTGATTGTAGGAGC+TGG | 0.482110 | 1.3:-76549776 | MS.gene056299:CDS |
TCCAATACACCGAACTTCAC+GGG | 0.484120 | 1.3:+76548293 | None:intergenic |
ATAATGGGAAATACTAGTAA+AGG | 0.486694 | 1.3:-76547377 | MS.gene056299:CDS |
TTCCAATACACCGAACTTCA+CGG | 0.489913 | 1.3:+76548292 | None:intergenic |
GTTGGTTCTATTCAGGAAAG+TGG | 0.496865 | 1.3:-76547119 | MS.gene056299:intron |
TTTCCCATTATTAGCTCCCA+AGG | 0.500153 | 1.3:+76547389 | None:intergenic |
CAAGGATGTCTATGTCTCAA+TGG | 0.503296 | 1.3:+76547407 | None:intergenic |
AGAAGAATACAAAAGGATTG+AGG | 0.508059 | 1.3:-76547210 | MS.gene056299:CDS |
CAACATCCTTGGGACTTCAC+AGG | 0.512542 | 1.3:-76549739 | MS.gene056299:intron |
TATTGGAAGAAATTTATTGT+TGG | 0.520538 | 1.3:-76548277 | MS.gene056299:CDS |
CCAAAGTACTGCATGAACAT+TGG | 0.523201 | 1.3:+76547918 | None:intergenic |
GAATACAAAAGGATTGAGGA+AGG | 0.529888 | 1.3:-76547206 | MS.gene056299:intron |
GCGTTGGATGTCGTTGGTGT+TGG | 0.533588 | 1.3:-76548828 | MS.gene056299:CDS |
TTGTGGAAAAGGTATTGATT+GGG | 0.535912 | 1.3:-76548055 | MS.gene056299:intron |
TGACTACTTCTTTGGTTATG+GGG | 0.537353 | 1.3:-76548539 | MS.gene056299:CDS |
TTCATGCAGTACTTTGGCAA+AGG | 0.540273 | 1.3:-76547912 | MS.gene056299:CDS |
TGGAAGGCGTTGGATGTCGT+TGG | 0.546019 | 1.3:-76548834 | MS.gene056299:CDS |
GGCCAAGATCAGGCATCATA+GGG | 0.547689 | 1.3:+76547324 | None:intergenic |
GGAAAATGCTTGGAAGGCGT+TGG | 0.549027 | 1.3:-76548844 | MS.gene056299:CDS |
CACTAGGAAGCTCATTGGCA+AGG | 0.549520 | 1.3:+76548250 | None:intergenic |
AAGGTATTGATTGGGTGTGA+TGG | 0.555442 | 1.3:-76548047 | MS.gene056299:CDS |
TTGTGCATTAGAAGATGGGG+TGG | 0.557089 | 1.3:-76547291 | MS.gene056299:CDS |
ACCAACATCTACAACTTCAT+GGG | 0.560855 | 1.3:-76548791 | MS.gene056299:intron |
GGTGCCACTAGGAAGCTCAT+TGG | 0.561305 | 1.3:+76548245 | None:intergenic |
CACCATTAGGTACATGTCAA+AGG | 0.572299 | 1.3:-76548226 | MS.gene056299:CDS |
TCTGTGGTGGCAAAGTGGCT+AGG | 0.577400 | 1.3:-76548017 | MS.gene056299:CDS |
ACTAGGAAGCTCATTGGCAA+GGG | 0.580582 | 1.3:+76548251 | None:intergenic |
TTTAGCGAGGTGTTTAGCTG+AGG | 0.590331 | 1.3:-76547267 | MS.gene056299:CDS |
CATGAAGTTGTAGATGTTGG+TGG | 0.595074 | 1.3:+76548793 | None:intergenic |
ATGATGCCTGATCTTGGCCA+AGG | 0.600478 | 1.3:-76547320 | MS.gene056299:CDS |
TGCCTGATCTTGGCCAAGGA+GGG | 0.602300 | 1.3:-76547316 | MS.gene056299:CDS |
TAAACACCCTTGTCATCACA+TGG | 0.608128 | 1.3:+76547870 | None:intergenic |
ACCCATGAAGTTGTAGATGT+TGG | 0.609291 | 1.3:+76548790 | None:intergenic |
GGTATGGGAAAATGCTTGGA+AGG | 0.611682 | 1.3:-76548850 | MS.gene056299:CDS |
CACAGGGAGATATGCAACGA+GGG | 0.613113 | 1.3:-76547976 | MS.gene056299:CDS |
GTGTTGTGCATTAGAAGATG+GGG | 0.626627 | 1.3:-76547294 | MS.gene056299:CDS |
AGAGTACCTGTGAAGTCCCA+AGG | 0.634653 | 1.3:+76549733 | None:intergenic |
ATGTACCTAATGGTGCCACT+AGG | 0.636331 | 1.3:+76548234 | None:intergenic |
TAAACTCTGTGGTGGCAAAG+TGG | 0.638925 | 1.3:-76548022 | MS.gene056299:CDS |
AGCTATTCCATGTGATGACA+AGG | 0.639989 | 1.3:-76547877 | MS.gene056299:CDS |
CATTGGTTCAAGCTTGTGAG+TGG | 0.645311 | 1.3:+76547935 | None:intergenic |
TCAACGAAGCCTCATACACA+GGG | 0.655710 | 1.3:-76547992 | MS.gene056299:CDS |
CTTGCCAATGAGCTTCCTAG+TGG | 0.665321 | 1.3:-76548249 | MS.gene056299:CDS |
GAAGTTGTAGATGTTGGTGG+CGG | 0.672083 | 1.3:+76548796 | None:intergenic |
ATGCCTGATCTTGGCCAAGG+AGG | 0.673847 | 1.3:-76547317 | MS.gene056299:CDS |
ACGTCTTTCATAGACAACAA+AGG | 0.684092 | 1.3:-76548501 | MS.gene056299:CDS |
TGATGGAGTAAACTCTGTGG+TGG | 0.689773 | 1.3:-76548030 | MS.gene056299:CDS |
TGGAACAACCATCAAAACCA+AGG | 0.693752 | 1.3:-76548154 | MS.gene056299:intron |
ACATGGACTCCTATCAACCA+AGG | 0.708027 | 1.3:-76547837 | MS.gene056299:intron |
ACAGGGAGATATGCAACGAG+GGG | 0.719732 | 1.3:-76547975 | MS.gene056299:CDS |
GTGTGATGGAGTAAACTCTG+TGG | 0.740999 | 1.3:-76548033 | MS.gene056299:CDS |
GCTATTCCATGTGATGACAA+GGG | 0.761661 | 1.3:-76547876 | MS.gene056299:CDS |
GAAGTCCCAAGGATGTTGTG+AGG | 0.766407 | 1.3:+76549744 | None:intergenic |
ACACAGGGAGATATGCAACG+AGG | 0.767390 | 1.3:-76547977 | MS.gene056299:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTTATAAGTATTATTA+AGG | + | chr1.3:76547535-76547554 | None:intergenic | 10.0% |
!!! | CTAATTATTTTTAAATAGAA+GGG | - | chr1.3:76547351-76547370 | MS.gene056299:CDS | 10.0% |
!!! | TAATTTGATTTTTAAAACAT+TGG | + | chr1.3:76549139-76549158 | None:intergenic | 10.0% |
!!! | TCTAATTATTTTTAAATAGA+AGG | - | chr1.3:76547350-76547369 | MS.gene056299:CDS | 10.0% |
!!! | TTATTTTCTAGATTAATAAT+CGG | + | chr1.3:76549323-76549342 | None:intergenic | 10.0% |
!! | ATCCATATATAATAAAATAG+AGG | + | chr1.3:76548506-76548525 | None:intergenic | 15.0% |
!!! | ATTATTGCAAATTATTTTGT+TGG | - | chr1.3:76549764-76549783 | MS.gene056299:CDS | 15.0% |
!!! | CTTTTTTGTTTCTTTTTTTA+AGG | + | chr1.3:76547404-76547423 | None:intergenic | 15.0% |
!!! | GATTTTCATGTATATAAATA+TGG | + | chr1.3:76547633-76547652 | None:intergenic | 15.0% |
!! | AAAATCAAATTAGAGAATGA+CGG | - | chr1.3:76549147-76549166 | MS.gene056299:intron | 20.0% |
!! | AACCAATCTAAATTATAATC+GGG | - | chr1.3:76549265-76549284 | MS.gene056299:intron | 20.0% |
!! | AATTTATTGTTTGCAATTTG+TGG | - | chr1.3:76548829-76548848 | MS.gene056299:CDS | 20.0% |
!! | AATTTGTATAAGCAAAAGAA+AGG | + | chr1.3:76549100-76549119 | None:intergenic | 20.0% |
!! | ATGAAATGTTTAACATCATT+TGG | + | chr1.3:76549440-76549459 | None:intergenic | 20.0% |
!! | ATTTGTATAAGCAAAAGAAA+GGG | + | chr1.3:76549099-76549118 | None:intergenic | 20.0% |
!! | CAACCAATCTAAATTATAAT+CGG | - | chr1.3:76549264-76549283 | MS.gene056299:intron | 20.0% |
!! | CAATATTACTATCAATCATA+TGG | + | chr1.3:76547955-76547974 | None:intergenic | 20.0% |
!! | CTTCATATCAAATTTAAGAA+CGG | + | chr1.3:76548551-76548570 | None:intergenic | 20.0% |
!! | GTAAGATTTAAACTAAGTTT+AGG | - | chr1.3:76547878-76547897 | MS.gene056299:CDS | 20.0% |
!! | TAAAAATAAAGAATGTCAAG+TGG | - | chr1.3:76549238-76549257 | MS.gene056299:intron | 20.0% |
!! | TATTGGAAGAAATTTATTGT+TGG | - | chr1.3:76548624-76548643 | MS.gene056299:intron | 20.0% |
!! | TTTCATGTATATAAATATGG+AGG | + | chr1.3:76547630-76547649 | None:intergenic | 20.0% |
!!! | ACTTTTAAGGAAACAATATT+TGG | - | chr1.3:76547465-76547484 | MS.gene056299:CDS | 20.0% |
!!! | ATTTTGTTGTTTAATTACCT+TGG | + | chr1.3:76548767-76548786 | None:intergenic | 20.0% |
!!! | CATTTTTAGAAAATGTAGTA+GGG | + | chr1.3:76548160-76548179 | None:intergenic | 20.0% |
!!! | GTAATAAAGACAAACTTTTA+AGG | - | chr1.3:76547452-76547471 | MS.gene056299:CDS | 20.0% |
!!! | TCATTTTTAGAAAATGTAGT+AGG | + | chr1.3:76548161-76548180 | None:intergenic | 20.0% |
!!! | TGCCTCTATTTTATTATATA+TGG | - | chr1.3:76548501-76548520 | MS.gene056299:CDS | 20.0% |
!!! | TTTATATAACTGACTCTTTA+GGG | + | chr1.3:76548202-76548221 | None:intergenic | 20.0% |
!!! | TTTTATATAACTGACTCTTT+AGG | + | chr1.3:76548203-76548222 | None:intergenic | 20.0% |
! | AAAATACTACATCTTGTTGA+TGG | - | chr1.3:76548727-76548746 | MS.gene056299:intron | 25.0% |
! | AAGAAGAAGAAGAATACAAA+AGG | - | chr1.3:76549684-76549703 | MS.gene056299:intron | 25.0% |
! | AATGAGTGTAAATAATCAAG+TGG | - | chr1.3:76547551-76547570 | MS.gene056299:intron | 25.0% |
! | ACATGAAAATCACACATAAA+TGG | - | chr1.3:76547642-76547661 | MS.gene056299:intron | 25.0% |
! | ATACCATTGTTAATATGTAG+AGG | - | chr1.3:76548524-76548543 | MS.gene056299:CDS | 25.0% |
! | ATCCCGATTATAATTTAGAT+TGG | + | chr1.3:76549270-76549289 | None:intergenic | 25.0% |
! | ATTACTATCAATCATATGGA+TGG | + | chr1.3:76547951-76547970 | None:intergenic | 25.0% |
! | GAAAAAGATATTGTGATTGT+AGG | - | chr1.3:76547119-76547138 | MS.gene056299:intron | 25.0% |
! | GAACAAATTGAATCATGATT+AGG | + | chr1.3:76549181-76549200 | None:intergenic | 25.0% |
! | GATGTGAAAATGTTCATAAA+AGG | + | chr1.3:76548255-76548274 | None:intergenic | 25.0% |
! | GATTAATAATCGGATTGAAT+CGG | + | chr1.3:76549313-76549332 | None:intergenic | 25.0% |
! | TAGCATAAAAACATACATCA+TGG | + | chr1.3:76548580-76548599 | None:intergenic | 25.0% |
! | TGAAACGAAATAACTTGAAT+TGG | - | chr1.3:76548327-76548346 | MS.gene056299:intron | 25.0% |
!! | AATATTGATGATTGCAGATT+GGG | - | chr1.3:76547968-76547987 | MS.gene056299:CDS | 25.0% |
!! | AATATTTGGAATGATGAAAG+TGG | - | chr1.3:76547479-76547498 | MS.gene056299:CDS | 25.0% |
!! | ATAATGGGAAATACTAGTAA+AGG | - | chr1.3:76549524-76549543 | MS.gene056299:intron | 25.0% |
!! | ATATTTGGAATGATGAAAGT+GGG | - | chr1.3:76547480-76547499 | MS.gene056299:CDS | 25.0% |
!! | CATGATTCAATTTGTTCAAA+CGG | - | chr1.3:76549184-76549203 | MS.gene056299:intron | 25.0% |
!! | TAATATTGATGATTGCAGAT+TGG | - | chr1.3:76547967-76547986 | MS.gene056299:CDS | 25.0% |
!!! | ACATATTGTTTTAGTTTAGC+AGG | + | chr1.3:76549395-76549414 | None:intergenic | 25.0% |
!!! | CATATTGTTTTAGTTTAGCA+GGG | + | chr1.3:76549394-76549413 | None:intergenic | 25.0% |
!!! | TGTATGTTTTTATGCTATAG+TGG | - | chr1.3:76548583-76548602 | MS.gene056299:intron | 25.0% |
!!! | TTATTTTGTTGGTTCTATTC+AGG | - | chr1.3:76549775-76549794 | MS.gene056299:CDS | 25.0% |
!!! | TTTAATTACCTTGGTTTTGA+TGG | + | chr1.3:76548758-76548777 | None:intergenic | 25.0% |
AGAAGAATACAAAAGGATTG+AGG | - | chr1.3:76549691-76549710 | MS.gene056299:intron | 30.0% | |
AGGTTTCAAGAAATATGCAA+AGG | - | chr1.3:76549715-76549734 | MS.gene056299:intron | 30.0% | |
ATGAGATATTACTCTGCTAT+TGG | - | chr1.3:76547747-76547766 | MS.gene056299:intron | 30.0% | |
CAAATTGAATCATGATTAGG+TGG | + | chr1.3:76549178-76549197 | None:intergenic | 30.0% | |
GTAAATAATCAAGTGGATGT+AGG | - | chr1.3:76547558-76547577 | MS.gene056299:intron | 30.0% | |
TAACTCTTTATCTGTAAGAC+AGG | + | chr1.3:76549363-76549382 | None:intergenic | 30.0% | |
TATCATCCAAAAAGACTTAG+CGG | + | chr1.3:76547692-76547711 | None:intergenic | 30.0% | |
TATTATTCACCTTGGTTGAT+AGG | + | chr1.3:76549076-76549095 | None:intergenic | 30.0% | |
TTGTTTGCAATTTGTGGAAA+AGG | - | chr1.3:76548835-76548854 | MS.gene056299:CDS | 30.0% | |
! | ACTTGCACTTTAGTGTTTTT+AGG | - | chr1.3:76547587-76547606 | MS.gene056299:intron | 30.0% |
! | ATTTTCACGACAAAATTAGC+TGG | - | chr1.3:76547804-76547823 | MS.gene056299:intron | 30.0% |
!! | ACTTGCACCTTATTGTTTTT+AGG | + | chr1.3:76547280-76547299 | None:intergenic | 30.0% |
!! | AGTTAGTGGATTTGCTTTAA+CGG | - | chr1.3:76548030-76548049 | MS.gene056299:CDS | 30.0% |
!! | TTGTGGAAAAGGTATTGATT+GGG | - | chr1.3:76548846-76548865 | MS.gene056299:CDS | 30.0% |
!! | TTTGTGGAAAAGGTATTGAT+TGG | - | chr1.3:76548845-76548864 | MS.gene056299:CDS | 30.0% |
!! | TTTTAGAAAATGTAGTAGGG+AGG | + | chr1.3:76548157-76548176 | None:intergenic | 30.0% |
!!! | GTGTTTATTGGTTTTTCACA+TGG | - | chr1.3:76549047-76549066 | MS.gene056299:intron | 30.0% |
AACCTTTGACATGTACCTAA+TGG | + | chr1.3:76548680-76548699 | None:intergenic | 35.0% | |
AAGTGGGTGTAAATTAGTGA+AGG | - | chr1.3:76547496-76547515 | MS.gene056299:CDS | 35.0% | |
AATAACTTGAATTGGAGTGC+AGG | - | chr1.3:76548335-76548354 | MS.gene056299:intron | 35.0% | |
AATATGCAAAGGAGAGAAGA+TGG | - | chr1.3:76549726-76549745 | MS.gene056299:intron | 35.0% | |
ACACATAAATGGCATGTAAG+CGG | - | chr1.3:76547653-76547672 | MS.gene056299:intron | 35.0% | |
ACACCCACCTAAAAACAATA+AGG | - | chr1.3:76547270-76547289 | MS.gene056299:CDS | 35.0% | |
ACCAACATCTACAACTTCAT+GGG | - | chr1.3:76548110-76548129 | MS.gene056299:intron | 35.0% | |
ACGTCTTTCATAGACAACAA+AGG | - | chr1.3:76548400-76548419 | MS.gene056299:intron | 35.0% | |
AGACTAACTTGAACTCTCAA+TGG | + | chr1.3:76548808-76548827 | None:intergenic | 35.0% | |
ATTGAGACATAGACATCCTT+GGG | - | chr1.3:76549496-76549515 | MS.gene056299:intron | 35.0% | |
GAATACAAAAGGATTGAGGA+AGG | - | chr1.3:76549695-76549714 | MS.gene056299:intron | 35.0% | |
GGTCCTCTACATATTAACAA+TGG | + | chr1.3:76548530-76548549 | None:intergenic | 35.0% | |
GTGACTACTTCTTTGGTTAT+GGG | - | chr1.3:76548361-76548380 | MS.gene056299:intron | 35.0% | |
TCAGATAGTTTGAGAGTTAG+TGG | - | chr1.3:76548016-76548035 | MS.gene056299:CDS | 35.0% | |
TCAGGAAAGTGGTTCAAAAT+TGG | - | chr1.3:76549793-76549812 | MS.gene056299:CDS | 35.0% | |
TCAGGTCATCTTAAAGAATG+AGG | + | chr1.3:76548294-76548313 | None:intergenic | 35.0% | |
TCTTCTTCTTCTTCTTCCTT+TGG | + | chr1.3:76549674-76549693 | None:intergenic | 35.0% | |
TGACTACTTCTTTGGTTATG+GGG | - | chr1.3:76548362-76548381 | MS.gene056299:intron | 35.0% | |
TGTGACTACTTCTTTGGTTA+TGG | - | chr1.3:76548360-76548379 | MS.gene056299:intron | 35.0% | |
! | AGTACTTTGGCAAAGGTTTT+AGG | - | chr1.3:76548996-76549015 | MS.gene056299:intron | 35.0% |
! | GTACTTTGGCAAAGGTTTTA+GGG | - | chr1.3:76548997-76549016 | MS.gene056299:intron | 35.0% |
! | TGGATTTGCTTTAACGGTAT+GGG | - | chr1.3:76548036-76548055 | MS.gene056299:CDS | 35.0% |
!! | AGAAAGGGTATTATTCACCT+TGG | + | chr1.3:76549084-76549103 | None:intergenic | 35.0% |
!!! | AATTAGCTGGCTAGTTTTAG+TGG | - | chr1.3:76547817-76547836 | MS.gene056299:intron | 35.0% |
!!! | ATTAGCTGGCTAGTTTTAGT+GGG | - | chr1.3:76547818-76547837 | MS.gene056299:intron | 35.0% |
!!! | GCACCTTATTGTTTTTAGGT+GGG | + | chr1.3:76547276-76547295 | None:intergenic | 35.0% |
!!! | GGCTTTTTTGAAGAAACCAA+AGG | - | chr1.3:76549655-76549674 | MS.gene056299:intron | 35.0% |
!!! | TGCACCTTATTGTTTTTAGG+TGG | + | chr1.3:76547277-76547296 | None:intergenic | 35.0% |
!!! | TGCACTTTAGTGTTTTTAGG+TGG | - | chr1.3:76547590-76547609 | MS.gene056299:intron | 35.0% |
AAAGGCAATGTTTGTGTTGC+TGG | - | chr1.3:76549542-76549561 | MS.gene056299:intron | 40.0% | |
ACATCCTTGGGAGCTAATAA+TGG | - | chr1.3:76549508-76549527 | MS.gene056299:intron | 40.0% | |
ACCCATGAAGTTGTAGATGT+TGG | + | chr1.3:76548114-76548133 | None:intergenic | 40.0% | |
AGCTATTCCATGTGATGACA+AGG | - | chr1.3:76549024-76549043 | MS.gene056299:intron | 40.0% | |
CAAGGATGTCTATGTCTCAA+TGG | + | chr1.3:76549497-76549516 | None:intergenic | 40.0% | |
CACCAACATCTACAACTTCA+TGG | - | chr1.3:76548109-76548128 | MS.gene056299:intron | 40.0% | |
CACCATTAGGTACATGTCAA+AGG | - | chr1.3:76548675-76548694 | MS.gene056299:intron | 40.0% | |
CAGGAATGTGACTACTTCTT+TGG | - | chr1.3:76548354-76548373 | MS.gene056299:intron | 40.0% | |
CATCCTTGGGAGCTAATAAT+GGG | - | chr1.3:76549509-76549528 | MS.gene056299:intron | 40.0% | |
CATGAAGTTGTAGATGTTGG+TGG | + | chr1.3:76548111-76548130 | None:intergenic | 40.0% | |
CATTGAGACATAGACATCCT+TGG | - | chr1.3:76549495-76549514 | MS.gene056299:intron | 40.0% | |
CCAATGTTCATGCAGTACTT+TGG | - | chr1.3:76548983-76549002 | MS.gene056299:intron | 40.0% | |
GATATTGTGATTGTAGGAGC+TGG | - | chr1.3:76547125-76547144 | MS.gene056299:intron | 40.0% | |
GATCAAATCAACTAGTGAGC+TGG | - | chr1.3:76549287-76549306 | MS.gene056299:intron | 40.0% | |
GCTATTCCATGTGATGACAA+GGG | - | chr1.3:76549025-76549044 | MS.gene056299:intron | 40.0% | |
GTGTTGTGCATTAGAAGATG+GGG | - | chr1.3:76549607-76549626 | MS.gene056299:intron | 40.0% | |
TAAACACCCTTGTCATCACA+TGG | + | chr1.3:76549034-76549053 | None:intergenic | 40.0% | |
TAACGGTATGGGAAAATGCT+TGG | - | chr1.3:76548047-76548066 | MS.gene056299:CDS | 40.0% | |
TATTTCGTTTCAGCCTCTCT+TGG | + | chr1.3:76548319-76548338 | None:intergenic | 40.0% | |
TCTCGTGAACACGACATTTA+TGG | - | chr1.3:76547720-76547739 | MS.gene056299:intron | 40.0% | |
TGGAACAACCATCAAAACCA+AGG | - | chr1.3:76548747-76548766 | MS.gene056299:intron | 40.0% | |
TTCATGCAGTACTTTGGCAA+AGG | - | chr1.3:76548989-76549008 | MS.gene056299:intron | 40.0% | |
TTCCAATACACCGAACTTCA+CGG | + | chr1.3:76548612-76548631 | None:intergenic | 40.0% | |
TTTCCCATTATTAGCTCCCA+AGG | + | chr1.3:76549515-76549534 | None:intergenic | 40.0% | |
! | GGTGTTGTGCATTAGAAGAT+GGG | - | chr1.3:76549606-76549625 | MS.gene056299:intron | 40.0% |
! | GTCAAAGGTTGTTGCTATTC+AGG | - | chr1.3:76548690-76548709 | MS.gene056299:intron | 40.0% |
! | GTGGATTTGCTTTAACGGTA+TGG | - | chr1.3:76548035-76548054 | MS.gene056299:CDS | 40.0% |
! | GTTGTTGCTATTCAGGAATC+TGG | - | chr1.3:76548697-76548716 | MS.gene056299:intron | 40.0% |
!! | AAGGTATTGATTGGGTGTGA+TGG | - | chr1.3:76548854-76548873 | MS.gene056299:CDS | 40.0% |
!! | CAGATTGGGCATTGAAAGTT+TGG | - | chr1.3:76547982-76548001 | MS.gene056299:CDS | 40.0% |
!! | CCAAAGTACTGCATGAACAT+TGG | + | chr1.3:76548986-76549005 | None:intergenic | 40.0% |
!! | GTGATGACAAGGGTGTTTAT+TGG | - | chr1.3:76549035-76549054 | MS.gene056299:intron | 40.0% |
!! | GTTGGTTCTATTCAGGAAAG+TGG | - | chr1.3:76549782-76549801 | MS.gene056299:CDS | 40.0% |
ACATGGACTCCTATCAACCA+AGG | - | chr1.3:76549064-76549083 | MS.gene056299:intron | 45.0% | |
ACTAGGAAGCTCATTGGCAA+GGG | + | chr1.3:76548653-76548672 | None:intergenic | 45.0% | |
ATTGTAGGAGCTGGAATTGC+TGG | - | chr1.3:76547134-76547153 | MS.gene056299:intron | 45.0% | |
GGTATGGGAAAATGCTTGGA+AGG | - | chr1.3:76548051-76548070 | MS.gene056299:intron | 45.0% | |
TAAACTCTGTGGTGGCAAAG+TGG | - | chr1.3:76548879-76548898 | MS.gene056299:CDS | 45.0% | |
TCAACGAAGCCTCATACACA+GGG | - | chr1.3:76548909-76548928 | MS.gene056299:CDS | 45.0% | |
TCCAATACACCGAACTTCAC+GGG | + | chr1.3:76548611-76548630 | None:intergenic | 45.0% | |
TGATGGAGTAAACTCTGTGG+TGG | - | chr1.3:76548871-76548890 | MS.gene056299:CDS | 45.0% | |
TGCATATCTCCCTGTGTATG+AGG | + | chr1.3:76548921-76548940 | None:intergenic | 45.0% | |
TTCAACGAAGCCTCATACAC+AGG | - | chr1.3:76548908-76548927 | MS.gene056299:CDS | 45.0% | |
TTGTGCATTAGAAGATGGGG+TGG | - | chr1.3:76549610-76549629 | MS.gene056299:intron | 45.0% | |
! | GAAGTTGTAGATGTTGGTGG+CGG | + | chr1.3:76548108-76548127 | None:intergenic | 45.0% |
! | GGGTGTTGTGCATTAGAAGA+TGG | - | chr1.3:76549605-76549624 | MS.gene056299:intron | 45.0% |
! | GTGTGATGGAGTAAACTCTG+TGG | - | chr1.3:76548868-76548887 | MS.gene056299:CDS | 45.0% |
! | GTTTCGCCGCTAAGTCTTTT+TGG | - | chr1.3:76547683-76547702 | MS.gene056299:intron | 45.0% |
! | TTTAGCGAGGTGTTTAGCTG+AGG | - | chr1.3:76549634-76549653 | MS.gene056299:intron | 45.0% |
!! | ATGTACCTAATGGTGCCACT+AGG | + | chr1.3:76548670-76548689 | None:intergenic | 45.0% |
!! | CATTGGTTCAAGCTTGTGAG+TGG | + | chr1.3:76548969-76548988 | None:intergenic | 45.0% |
!!! | TTTGGCAAAGGTTTTAGGGC+TGG | - | chr1.3:76549001-76549020 | MS.gene056299:intron | 45.0% |
ACACAGGGAGATATGCAACG+AGG | - | chr1.3:76548924-76548943 | MS.gene056299:intron | 50.0% | |
ACAGGGAGATATGCAACGAG+GGG | - | chr1.3:76548926-76548945 | MS.gene056299:intron | 50.0% | |
AGATGACCTGATGCCAAGAG+AGG | - | chr1.3:76548303-76548322 | MS.gene056299:intron | 50.0% | |
AGCTTCCTAGTGGCACCATT+AGG | - | chr1.3:76548662-76548681 | MS.gene056299:intron | 50.0% | |
ATGATGCCTGATCTTGGCCA+AGG | - | chr1.3:76549581-76549600 | MS.gene056299:intron | 50.0% | |
CAACATCCTTGGGACTTCAC+AGG | - | chr1.3:76547162-76547181 | MS.gene056299:intron | 50.0% | |
CACAGGGAGATATGCAACGA+GGG | - | chr1.3:76548925-76548944 | MS.gene056299:intron | 50.0% | |
CACCCTATGATGCCTGATCT+TGG | - | chr1.3:76549575-76549594 | MS.gene056299:intron | 50.0% | |
CACTAGGAAGCTCATTGGCA+AGG | + | chr1.3:76548654-76548673 | None:intergenic | 50.0% | |
CTAATGCACAACACCCTCCT+TGG | + | chr1.3:76549601-76549620 | None:intergenic | 50.0% | |
CTTGCCAATGAGCTTCCTAG+TGG | - | chr1.3:76548652-76548671 | MS.gene056299:intron | 50.0% | |
GAAGTCCCAAGGATGTTGTG+AGG | + | chr1.3:76547160-76547179 | None:intergenic | 50.0% | |
GGCCAAGATCAGGCATCATA+GGG | + | chr1.3:76549580-76549599 | None:intergenic | 50.0% | |
TGGCCAAGATCAGGCATCAT+AGG | + | chr1.3:76549581-76549600 | None:intergenic | 50.0% | |
TTTCAGCCTCTCTTGGCATC+AGG | + | chr1.3:76548312-76548331 | None:intergenic | 50.0% | |
! | AGAGTACCTGTGAAGTCCCA+AGG | + | chr1.3:76547171-76547190 | None:intergenic | 50.0% |
! | ATAGTGGAGCCCGTGAAGTT+CGG | - | chr1.3:76548599-76548618 | MS.gene056299:intron | 50.0% |
! | GGAAAATGCTTGGAAGGCGT+TGG | - | chr1.3:76548057-76548076 | MS.gene056299:intron | 50.0% |
!!! | AAGATGGGGTGGTTTTAGCG+AGG | - | chr1.3:76549621-76549640 | MS.gene056299:intron | 50.0% |
ATGCCTGATCTTGGCCAAGG+AGG | - | chr1.3:76549584-76549603 | MS.gene056299:intron | 55.0% | |
GCGTTGGATGTCGTTGGTGT+TGG | - | chr1.3:76548073-76548092 | MS.gene056299:intron | 55.0% | |
TCTGTGGTGGCAAAGTGGCT+AGG | - | chr1.3:76548884-76548903 | MS.gene056299:CDS | 55.0% | |
TGCCTGATCTTGGCCAAGGA+GGG | - | chr1.3:76549585-76549604 | MS.gene056299:intron | 55.0% | |
! | GCTGGCCTCACAACATCCTT+GGG | - | chr1.3:76547152-76547171 | MS.gene056299:intron | 55.0% |
! | TGCTGGCCTCACAACATCCT+TGG | - | chr1.3:76547151-76547170 | MS.gene056299:intron | 55.0% |
!! | GCCCGTGAAGTTCGGTGTAT+TGG | - | chr1.3:76548607-76548626 | MS.gene056299:intron | 55.0% |
!! | GGTGCCACTAGGAAGCTCAT+TGG | + | chr1.3:76548659-76548678 | None:intergenic | 55.0% |
!! | GTTGTAGATGTTGGTGGCGG+AGG | + | chr1.3:76548105-76548124 | None:intergenic | 55.0% |
!! | TGGAAGGCGTTGGATGTCGT+TGG | - | chr1.3:76548067-76548086 | MS.gene056299:intron | 55.0% |
CACCCTCCTTGGCCAAGATC+AGG | + | chr1.3:76549590-76549609 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 76547104 | 76549819 | 76547104 | ID=MS.gene056299 |
chr1.3 | mRNA | 76547104 | 76549819 | 76547104 | ID=MS.gene056299.t1;Parent=MS.gene056299 |
chr1.3 | exon | 76549740 | 76549819 | 76549740 | ID=MS.gene056299.t1.exon1;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76549740 | 76549819 | 76549740 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
chr1.3 | exon | 76548792 | 76548938 | 76548792 | ID=MS.gene056299.t1.exon2;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76548792 | 76548938 | 76548792 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
chr1.3 | exon | 76548495 | 76548566 | 76548495 | ID=MS.gene056299.t1.exon3;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76548495 | 76548566 | 76548495 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
chr1.3 | exon | 76548155 | 76548320 | 76548155 | ID=MS.gene056299.t1.exon4;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76548155 | 76548320 | 76548155 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
chr1.3 | exon | 76547838 | 76548066 | 76547838 | ID=MS.gene056299.t1.exon5;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76547838 | 76548066 | 76547838 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
chr1.3 | exon | 76547207 | 76547551 | 76547207 | ID=MS.gene056299.t1.exon6;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76547207 | 76547551 | 76547207 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
chr1.3 | exon | 76547104 | 76547126 | 76547104 | ID=MS.gene056299.t1.exon7;Parent=MS.gene056299.t1 |
chr1.3 | CDS | 76547104 | 76547126 | 76547104 | ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1 |
Gene Sequence |
Protein sequence |