AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056299


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056299.t1 MTR_1g112780 94.937 316 16 0 13 328 401 716 0.0 606
MS.gene056299.t1 MTR_1g112780 77.709 323 68 2 6 328 9 327 0.0 527
MS.gene056299.t1 MTR_1g112740 89.815 324 30 1 5 328 1 321 0.0 590
MS.gene056299.t1 MTR_1g090667 80.747 348 63 2 1 347 1 345 0.0 563
MS.gene056299.t1 MTR_1g112750 80.243 329 61 2 1 328 1 326 0.0 522
MS.gene056299.t1 MTR_5g013260 40.286 350 202 5 4 352 41 384 4.07e-82 256
MS.gene056299.t1 MTR_5g013250 38.746 351 207 5 3 352 36 379 4.22e-80 251
MS.gene056299.t1 MTR_4g035655 40.367 327 180 7 6 326 481 798 8.67e-69 231
MS.gene056299.t1 MTR_4g035655 39.091 330 190 5 1 326 1 323 6.23e-68 229
MS.gene056299.t1 MTR_5g017350 26.957 345 216 12 9 334 78 405 3.75e-15 77.0
MS.gene056299.t1 MTR_5g017350 26.957 345 216 12 9 334 78 405 6.84e-15 75.9
MS.gene056299.t1 MTR_5g017350 27.035 344 215 12 9 333 78 404 6.99e-15 76.3
MS.gene056299.t1 MTR_5g017350 26.957 345 216 12 9 334 78 405 1.06e-14 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056299.t1 AT5G05320 51.429 350 160 3 1 347 1 343 2.26e-122 358
MS.gene056299.t1 AT4G38540 52.422 351 157 3 1 347 1 345 3.40e-111 330
MS.gene056299.t1 AT2G35660 41.975 324 182 4 6 328 44 362 1.45e-78 248
MS.gene056299.t1 AT2G29720 39.403 335 195 5 19 352 55 382 6.47e-73 233
MS.gene056299.t1 AT4G15760 35.207 338 210 3 17 347 39 374 4.71e-61 202
MS.gene056299.t1 AT4G15760 35.736 333 203 3 17 347 39 362 4.95e-61 201
MS.gene056299.t1 AT2G35660 39.592 245 143 3 85 328 8 248 3.98e-52 176
MS.gene056299.t1 AT2G35660 39.592 245 143 3 85 328 8 248 3.98e-52 176
MS.gene056299.t1 AT4G15765 31.683 303 163 6 6 306 3 263 1.18e-38 139
MS.gene056299.t1 AT4G15765 28.261 184 131 1 123 306 8 190 2.73e-23 96.3
MS.gene056299.t1 AT4G15765 28.261 184 131 1 123 306 8 190 2.73e-23 96.3
MS.gene056299.t1 AT4G15765 28.261 184 131 1 123 306 8 190 2.73e-23 96.3
MS.gene056299.t1 AT4G15765 28.261 184 131 1 123 306 8 190 2.73e-23 96.3
MS.gene056299.t1 AT5G67030 26.613 372 240 14 2 352 72 431 5.62e-18 85.5
MS.gene056299.t1 AT5G67030 27.536 345 220 13 2 328 72 404 9.00e-18 85.1

Find 95 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAAAGGTTGTTGCTATTC+AGG 0.183324 1.3:-76548211 MS.gene056299:CDS
TGTGACTACTTCTTTGGTTA+TGG 0.241431 1.3:-76548541 MS.gene056299:CDS
TCAGGAAAGTGGTTCAAAAT+TGG 0.273076 1.3:-76547108 MS.gene056299:intron
CAGGAATGTGACTACTTCTT+TGG 0.280000 1.3:-76548547 MS.gene056299:CDS
ATGAAATGTTTAACATCATT+TGG 0.309078 1.3:+76547464 None:intergenic
TATTATTCACCTTGGTTGAT+AGG 0.315579 1.3:+76547828 None:intergenic
CAGATTGGGCATTGAAAGTT+TGG 0.318004 1.3:-76548919 MS.gene056299:CDS
AAAGGCAATGTTTGTGTTGC+TGG 0.327124 1.3:-76547359 MS.gene056299:CDS
TCAGATAGTTTGAGAGTTAG+TGG 0.330201 1.3:-76548885 MS.gene056299:CDS
ACATCCTTGGGAGCTAATAA+TGG 0.330779 1.3:-76547393 MS.gene056299:CDS
GTTGTTGCTATTCAGGAATC+TGG 0.332949 1.3:-76548204 MS.gene056299:CDS
GTGACTACTTCTTTGGTTAT+GGG 0.339346 1.3:-76548540 MS.gene056299:CDS
TGGCCAAGATCAGGCATCAT+AGG 0.366278 1.3:+76547323 None:intergenic
GTGATGACAAGGGTGTTTAT+TGG 0.366836 1.3:-76547866 MS.gene056299:CDS
ATTGTAGGAGCTGGAATTGC+TGG 0.368049 1.3:-76549767 MS.gene056299:CDS
CACCCTATGATGCCTGATCT+TGG 0.380927 1.3:-76547326 MS.gene056299:CDS
GCCCGTGAAGTTCGGTGTAT+TGG 0.387505 1.3:-76548294 MS.gene056299:CDS
AAAATACTACATCTTGTTGA+TGG 0.405138 1.3:-76548174 MS.gene056299:CDS
CACCAACATCTACAACTTCA+TGG 0.407357 1.3:-76548792 MS.gene056299:CDS
GTGGATTTGCTTTAACGGTA+TGG 0.414647 1.3:-76548866 MS.gene056299:CDS
TGCTGGCCTCACAACATCCT+TGG 0.420337 1.3:-76549750 MS.gene056299:CDS
TTTGTGGAAAAGGTATTGAT+TGG 0.432300 1.3:-76548056 MS.gene056299:intron
CATCCTTGGGAGCTAATAAT+GGG 0.433653 1.3:-76547392 MS.gene056299:CDS
TTCAACGAAGCCTCATACAC+AGG 0.443232 1.3:-76547993 MS.gene056299:CDS
AGTTAGTGGATTTGCTTTAA+CGG 0.446543 1.3:-76548871 MS.gene056299:CDS
AAGAAGAAGAAGAATACAAA+AGG 0.451857 1.3:-76547217 MS.gene056299:CDS
TGCATATCTCCCTGTGTATG+AGG 0.452906 1.3:+76547983 None:intergenic
CCAATGTTCATGCAGTACTT+TGG 0.458036 1.3:-76547918 MS.gene056299:CDS
CATTGAGACATAGACATCCT+TGG 0.463494 1.3:-76547406 MS.gene056299:CDS
AACCTTTGACATGTACCTAA+TGG 0.465605 1.3:+76548224 None:intergenic
GCTGGCCTCACAACATCCTT+GGG 0.467311 1.3:-76549749 MS.gene056299:CDS
TGGATTTGCTTTAACGGTAT+GGG 0.467915 1.3:-76548865 MS.gene056299:CDS
CACCCTCCTTGGCCAAGATC+AGG 0.471352 1.3:+76547314 None:intergenic
GTTGTAGATGTTGGTGGCGG+AGG 0.473299 1.3:+76548799 None:intergenic
ATTGAGACATAGACATCCTT+GGG 0.475914 1.3:-76547405 MS.gene056299:CDS
TAACGGTATGGGAAAATGCT+TGG 0.477745 1.3:-76548854 MS.gene056299:CDS
AGCTTCCTAGTGGCACCATT+AGG 0.478225 1.3:-76548239 MS.gene056299:CDS
ATAGTGGAGCCCGTGAAGTT+CGG 0.480346 1.3:-76548302 MS.gene056299:intron
GGGTGTTGTGCATTAGAAGA+TGG 0.480761 1.3:-76547296 MS.gene056299:CDS
CTAATGCACAACACCCTCCT+TGG 0.481132 1.3:+76547303 None:intergenic
GGTGTTGTGCATTAGAAGAT+GGG 0.481605 1.3:-76547295 MS.gene056299:CDS
GATATTGTGATTGTAGGAGC+TGG 0.482110 1.3:-76549776 MS.gene056299:CDS
TCCAATACACCGAACTTCAC+GGG 0.484120 1.3:+76548293 None:intergenic
ATAATGGGAAATACTAGTAA+AGG 0.486694 1.3:-76547377 MS.gene056299:CDS
TTCCAATACACCGAACTTCA+CGG 0.489913 1.3:+76548292 None:intergenic
GTTGGTTCTATTCAGGAAAG+TGG 0.496865 1.3:-76547119 MS.gene056299:intron
TTTCCCATTATTAGCTCCCA+AGG 0.500153 1.3:+76547389 None:intergenic
CAAGGATGTCTATGTCTCAA+TGG 0.503296 1.3:+76547407 None:intergenic
AGAAGAATACAAAAGGATTG+AGG 0.508059 1.3:-76547210 MS.gene056299:CDS
CAACATCCTTGGGACTTCAC+AGG 0.512542 1.3:-76549739 MS.gene056299:intron
TATTGGAAGAAATTTATTGT+TGG 0.520538 1.3:-76548277 MS.gene056299:CDS
CCAAAGTACTGCATGAACAT+TGG 0.523201 1.3:+76547918 None:intergenic
GAATACAAAAGGATTGAGGA+AGG 0.529888 1.3:-76547206 MS.gene056299:intron
GCGTTGGATGTCGTTGGTGT+TGG 0.533588 1.3:-76548828 MS.gene056299:CDS
TTGTGGAAAAGGTATTGATT+GGG 0.535912 1.3:-76548055 MS.gene056299:intron
TGACTACTTCTTTGGTTATG+GGG 0.537353 1.3:-76548539 MS.gene056299:CDS
TTCATGCAGTACTTTGGCAA+AGG 0.540273 1.3:-76547912 MS.gene056299:CDS
TGGAAGGCGTTGGATGTCGT+TGG 0.546019 1.3:-76548834 MS.gene056299:CDS
GGCCAAGATCAGGCATCATA+GGG 0.547689 1.3:+76547324 None:intergenic
GGAAAATGCTTGGAAGGCGT+TGG 0.549027 1.3:-76548844 MS.gene056299:CDS
CACTAGGAAGCTCATTGGCA+AGG 0.549520 1.3:+76548250 None:intergenic
AAGGTATTGATTGGGTGTGA+TGG 0.555442 1.3:-76548047 MS.gene056299:CDS
TTGTGCATTAGAAGATGGGG+TGG 0.557089 1.3:-76547291 MS.gene056299:CDS
ACCAACATCTACAACTTCAT+GGG 0.560855 1.3:-76548791 MS.gene056299:intron
GGTGCCACTAGGAAGCTCAT+TGG 0.561305 1.3:+76548245 None:intergenic
CACCATTAGGTACATGTCAA+AGG 0.572299 1.3:-76548226 MS.gene056299:CDS
TCTGTGGTGGCAAAGTGGCT+AGG 0.577400 1.3:-76548017 MS.gene056299:CDS
ACTAGGAAGCTCATTGGCAA+GGG 0.580582 1.3:+76548251 None:intergenic
TTTAGCGAGGTGTTTAGCTG+AGG 0.590331 1.3:-76547267 MS.gene056299:CDS
CATGAAGTTGTAGATGTTGG+TGG 0.595074 1.3:+76548793 None:intergenic
ATGATGCCTGATCTTGGCCA+AGG 0.600478 1.3:-76547320 MS.gene056299:CDS
TGCCTGATCTTGGCCAAGGA+GGG 0.602300 1.3:-76547316 MS.gene056299:CDS
TAAACACCCTTGTCATCACA+TGG 0.608128 1.3:+76547870 None:intergenic
ACCCATGAAGTTGTAGATGT+TGG 0.609291 1.3:+76548790 None:intergenic
GGTATGGGAAAATGCTTGGA+AGG 0.611682 1.3:-76548850 MS.gene056299:CDS
CACAGGGAGATATGCAACGA+GGG 0.613113 1.3:-76547976 MS.gene056299:CDS
GTGTTGTGCATTAGAAGATG+GGG 0.626627 1.3:-76547294 MS.gene056299:CDS
AGAGTACCTGTGAAGTCCCA+AGG 0.634653 1.3:+76549733 None:intergenic
ATGTACCTAATGGTGCCACT+AGG 0.636331 1.3:+76548234 None:intergenic
TAAACTCTGTGGTGGCAAAG+TGG 0.638925 1.3:-76548022 MS.gene056299:CDS
AGCTATTCCATGTGATGACA+AGG 0.639989 1.3:-76547877 MS.gene056299:CDS
CATTGGTTCAAGCTTGTGAG+TGG 0.645311 1.3:+76547935 None:intergenic
TCAACGAAGCCTCATACACA+GGG 0.655710 1.3:-76547992 MS.gene056299:CDS
CTTGCCAATGAGCTTCCTAG+TGG 0.665321 1.3:-76548249 MS.gene056299:CDS
GAAGTTGTAGATGTTGGTGG+CGG 0.672083 1.3:+76548796 None:intergenic
ATGCCTGATCTTGGCCAAGG+AGG 0.673847 1.3:-76547317 MS.gene056299:CDS
ACGTCTTTCATAGACAACAA+AGG 0.684092 1.3:-76548501 MS.gene056299:CDS
TGATGGAGTAAACTCTGTGG+TGG 0.689773 1.3:-76548030 MS.gene056299:CDS
TGGAACAACCATCAAAACCA+AGG 0.693752 1.3:-76548154 MS.gene056299:intron
ACATGGACTCCTATCAACCA+AGG 0.708027 1.3:-76547837 MS.gene056299:intron
ACAGGGAGATATGCAACGAG+GGG 0.719732 1.3:-76547975 MS.gene056299:CDS
GTGTGATGGAGTAAACTCTG+TGG 0.740999 1.3:-76548033 MS.gene056299:CDS
GCTATTCCATGTGATGACAA+GGG 0.761661 1.3:-76547876 MS.gene056299:CDS
GAAGTCCCAAGGATGTTGTG+AGG 0.766407 1.3:+76549744 None:intergenic
ACACAGGGAGATATGCAACG+AGG 0.767390 1.3:-76547977 MS.gene056299:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTATAAGTATTATTA+AGG + chr1.3:76547535-76547554 None:intergenic 10.0%
!!! CTAATTATTTTTAAATAGAA+GGG - chr1.3:76547351-76547370 MS.gene056299:CDS 10.0%
!!! TAATTTGATTTTTAAAACAT+TGG + chr1.3:76549139-76549158 None:intergenic 10.0%
!!! TCTAATTATTTTTAAATAGA+AGG - chr1.3:76547350-76547369 MS.gene056299:CDS 10.0%
!!! TTATTTTCTAGATTAATAAT+CGG + chr1.3:76549323-76549342 None:intergenic 10.0%
!! ATCCATATATAATAAAATAG+AGG + chr1.3:76548506-76548525 None:intergenic 15.0%
!!! ATTATTGCAAATTATTTTGT+TGG - chr1.3:76549764-76549783 MS.gene056299:CDS 15.0%
!!! CTTTTTTGTTTCTTTTTTTA+AGG + chr1.3:76547404-76547423 None:intergenic 15.0%
!!! GATTTTCATGTATATAAATA+TGG + chr1.3:76547633-76547652 None:intergenic 15.0%
!! AAAATCAAATTAGAGAATGA+CGG - chr1.3:76549147-76549166 MS.gene056299:intron 20.0%
!! AACCAATCTAAATTATAATC+GGG - chr1.3:76549265-76549284 MS.gene056299:intron 20.0%
!! AATTTATTGTTTGCAATTTG+TGG - chr1.3:76548829-76548848 MS.gene056299:CDS 20.0%
!! AATTTGTATAAGCAAAAGAA+AGG + chr1.3:76549100-76549119 None:intergenic 20.0%
!! ATGAAATGTTTAACATCATT+TGG + chr1.3:76549440-76549459 None:intergenic 20.0%
!! ATTTGTATAAGCAAAAGAAA+GGG + chr1.3:76549099-76549118 None:intergenic 20.0%
!! CAACCAATCTAAATTATAAT+CGG - chr1.3:76549264-76549283 MS.gene056299:intron 20.0%
!! CAATATTACTATCAATCATA+TGG + chr1.3:76547955-76547974 None:intergenic 20.0%
!! CTTCATATCAAATTTAAGAA+CGG + chr1.3:76548551-76548570 None:intergenic 20.0%
!! GTAAGATTTAAACTAAGTTT+AGG - chr1.3:76547878-76547897 MS.gene056299:CDS 20.0%
!! TAAAAATAAAGAATGTCAAG+TGG - chr1.3:76549238-76549257 MS.gene056299:intron 20.0%
!! TATTGGAAGAAATTTATTGT+TGG - chr1.3:76548624-76548643 MS.gene056299:intron 20.0%
!! TTTCATGTATATAAATATGG+AGG + chr1.3:76547630-76547649 None:intergenic 20.0%
!!! ACTTTTAAGGAAACAATATT+TGG - chr1.3:76547465-76547484 MS.gene056299:CDS 20.0%
!!! ATTTTGTTGTTTAATTACCT+TGG + chr1.3:76548767-76548786 None:intergenic 20.0%
!!! CATTTTTAGAAAATGTAGTA+GGG + chr1.3:76548160-76548179 None:intergenic 20.0%
!!! GTAATAAAGACAAACTTTTA+AGG - chr1.3:76547452-76547471 MS.gene056299:CDS 20.0%
!!! TCATTTTTAGAAAATGTAGT+AGG + chr1.3:76548161-76548180 None:intergenic 20.0%
!!! TGCCTCTATTTTATTATATA+TGG - chr1.3:76548501-76548520 MS.gene056299:CDS 20.0%
!!! TTTATATAACTGACTCTTTA+GGG + chr1.3:76548202-76548221 None:intergenic 20.0%
!!! TTTTATATAACTGACTCTTT+AGG + chr1.3:76548203-76548222 None:intergenic 20.0%
! AAAATACTACATCTTGTTGA+TGG - chr1.3:76548727-76548746 MS.gene056299:intron 25.0%
! AAGAAGAAGAAGAATACAAA+AGG - chr1.3:76549684-76549703 MS.gene056299:intron 25.0%
! AATGAGTGTAAATAATCAAG+TGG - chr1.3:76547551-76547570 MS.gene056299:intron 25.0%
! ACATGAAAATCACACATAAA+TGG - chr1.3:76547642-76547661 MS.gene056299:intron 25.0%
! ATACCATTGTTAATATGTAG+AGG - chr1.3:76548524-76548543 MS.gene056299:CDS 25.0%
! ATCCCGATTATAATTTAGAT+TGG + chr1.3:76549270-76549289 None:intergenic 25.0%
! ATTACTATCAATCATATGGA+TGG + chr1.3:76547951-76547970 None:intergenic 25.0%
! GAAAAAGATATTGTGATTGT+AGG - chr1.3:76547119-76547138 MS.gene056299:intron 25.0%
! GAACAAATTGAATCATGATT+AGG + chr1.3:76549181-76549200 None:intergenic 25.0%
! GATGTGAAAATGTTCATAAA+AGG + chr1.3:76548255-76548274 None:intergenic 25.0%
! GATTAATAATCGGATTGAAT+CGG + chr1.3:76549313-76549332 None:intergenic 25.0%
! TAGCATAAAAACATACATCA+TGG + chr1.3:76548580-76548599 None:intergenic 25.0%
! TGAAACGAAATAACTTGAAT+TGG - chr1.3:76548327-76548346 MS.gene056299:intron 25.0%
!! AATATTGATGATTGCAGATT+GGG - chr1.3:76547968-76547987 MS.gene056299:CDS 25.0%
!! AATATTTGGAATGATGAAAG+TGG - chr1.3:76547479-76547498 MS.gene056299:CDS 25.0%
!! ATAATGGGAAATACTAGTAA+AGG - chr1.3:76549524-76549543 MS.gene056299:intron 25.0%
!! ATATTTGGAATGATGAAAGT+GGG - chr1.3:76547480-76547499 MS.gene056299:CDS 25.0%
!! CATGATTCAATTTGTTCAAA+CGG - chr1.3:76549184-76549203 MS.gene056299:intron 25.0%
!! TAATATTGATGATTGCAGAT+TGG - chr1.3:76547967-76547986 MS.gene056299:CDS 25.0%
!!! ACATATTGTTTTAGTTTAGC+AGG + chr1.3:76549395-76549414 None:intergenic 25.0%
!!! CATATTGTTTTAGTTTAGCA+GGG + chr1.3:76549394-76549413 None:intergenic 25.0%
!!! TGTATGTTTTTATGCTATAG+TGG - chr1.3:76548583-76548602 MS.gene056299:intron 25.0%
!!! TTATTTTGTTGGTTCTATTC+AGG - chr1.3:76549775-76549794 MS.gene056299:CDS 25.0%
!!! TTTAATTACCTTGGTTTTGA+TGG + chr1.3:76548758-76548777 None:intergenic 25.0%
AGAAGAATACAAAAGGATTG+AGG - chr1.3:76549691-76549710 MS.gene056299:intron 30.0%
AGGTTTCAAGAAATATGCAA+AGG - chr1.3:76549715-76549734 MS.gene056299:intron 30.0%
ATGAGATATTACTCTGCTAT+TGG - chr1.3:76547747-76547766 MS.gene056299:intron 30.0%
CAAATTGAATCATGATTAGG+TGG + chr1.3:76549178-76549197 None:intergenic 30.0%
GTAAATAATCAAGTGGATGT+AGG - chr1.3:76547558-76547577 MS.gene056299:intron 30.0%
TAACTCTTTATCTGTAAGAC+AGG + chr1.3:76549363-76549382 None:intergenic 30.0%
TATCATCCAAAAAGACTTAG+CGG + chr1.3:76547692-76547711 None:intergenic 30.0%
TATTATTCACCTTGGTTGAT+AGG + chr1.3:76549076-76549095 None:intergenic 30.0%
TTGTTTGCAATTTGTGGAAA+AGG - chr1.3:76548835-76548854 MS.gene056299:CDS 30.0%
! ACTTGCACTTTAGTGTTTTT+AGG - chr1.3:76547587-76547606 MS.gene056299:intron 30.0%
! ATTTTCACGACAAAATTAGC+TGG - chr1.3:76547804-76547823 MS.gene056299:intron 30.0%
!! ACTTGCACCTTATTGTTTTT+AGG + chr1.3:76547280-76547299 None:intergenic 30.0%
!! AGTTAGTGGATTTGCTTTAA+CGG - chr1.3:76548030-76548049 MS.gene056299:CDS 30.0%
!! TTGTGGAAAAGGTATTGATT+GGG - chr1.3:76548846-76548865 MS.gene056299:CDS 30.0%
!! TTTGTGGAAAAGGTATTGAT+TGG - chr1.3:76548845-76548864 MS.gene056299:CDS 30.0%
!! TTTTAGAAAATGTAGTAGGG+AGG + chr1.3:76548157-76548176 None:intergenic 30.0%
!!! GTGTTTATTGGTTTTTCACA+TGG - chr1.3:76549047-76549066 MS.gene056299:intron 30.0%
AACCTTTGACATGTACCTAA+TGG + chr1.3:76548680-76548699 None:intergenic 35.0%
AAGTGGGTGTAAATTAGTGA+AGG - chr1.3:76547496-76547515 MS.gene056299:CDS 35.0%
AATAACTTGAATTGGAGTGC+AGG - chr1.3:76548335-76548354 MS.gene056299:intron 35.0%
AATATGCAAAGGAGAGAAGA+TGG - chr1.3:76549726-76549745 MS.gene056299:intron 35.0%
ACACATAAATGGCATGTAAG+CGG - chr1.3:76547653-76547672 MS.gene056299:intron 35.0%
ACACCCACCTAAAAACAATA+AGG - chr1.3:76547270-76547289 MS.gene056299:CDS 35.0%
ACCAACATCTACAACTTCAT+GGG - chr1.3:76548110-76548129 MS.gene056299:intron 35.0%
ACGTCTTTCATAGACAACAA+AGG - chr1.3:76548400-76548419 MS.gene056299:intron 35.0%
AGACTAACTTGAACTCTCAA+TGG + chr1.3:76548808-76548827 None:intergenic 35.0%
ATTGAGACATAGACATCCTT+GGG - chr1.3:76549496-76549515 MS.gene056299:intron 35.0%
GAATACAAAAGGATTGAGGA+AGG - chr1.3:76549695-76549714 MS.gene056299:intron 35.0%
GGTCCTCTACATATTAACAA+TGG + chr1.3:76548530-76548549 None:intergenic 35.0%
GTGACTACTTCTTTGGTTAT+GGG - chr1.3:76548361-76548380 MS.gene056299:intron 35.0%
TCAGATAGTTTGAGAGTTAG+TGG - chr1.3:76548016-76548035 MS.gene056299:CDS 35.0%
TCAGGAAAGTGGTTCAAAAT+TGG - chr1.3:76549793-76549812 MS.gene056299:CDS 35.0%
TCAGGTCATCTTAAAGAATG+AGG + chr1.3:76548294-76548313 None:intergenic 35.0%
TCTTCTTCTTCTTCTTCCTT+TGG + chr1.3:76549674-76549693 None:intergenic 35.0%
TGACTACTTCTTTGGTTATG+GGG - chr1.3:76548362-76548381 MS.gene056299:intron 35.0%
TGTGACTACTTCTTTGGTTA+TGG - chr1.3:76548360-76548379 MS.gene056299:intron 35.0%
! AGTACTTTGGCAAAGGTTTT+AGG - chr1.3:76548996-76549015 MS.gene056299:intron 35.0%
! GTACTTTGGCAAAGGTTTTA+GGG - chr1.3:76548997-76549016 MS.gene056299:intron 35.0%
! TGGATTTGCTTTAACGGTAT+GGG - chr1.3:76548036-76548055 MS.gene056299:CDS 35.0%
!! AGAAAGGGTATTATTCACCT+TGG + chr1.3:76549084-76549103 None:intergenic 35.0%
!!! AATTAGCTGGCTAGTTTTAG+TGG - chr1.3:76547817-76547836 MS.gene056299:intron 35.0%
!!! ATTAGCTGGCTAGTTTTAGT+GGG - chr1.3:76547818-76547837 MS.gene056299:intron 35.0%
!!! GCACCTTATTGTTTTTAGGT+GGG + chr1.3:76547276-76547295 None:intergenic 35.0%
!!! GGCTTTTTTGAAGAAACCAA+AGG - chr1.3:76549655-76549674 MS.gene056299:intron 35.0%
!!! TGCACCTTATTGTTTTTAGG+TGG + chr1.3:76547277-76547296 None:intergenic 35.0%
!!! TGCACTTTAGTGTTTTTAGG+TGG - chr1.3:76547590-76547609 MS.gene056299:intron 35.0%
AAAGGCAATGTTTGTGTTGC+TGG - chr1.3:76549542-76549561 MS.gene056299:intron 40.0%
ACATCCTTGGGAGCTAATAA+TGG - chr1.3:76549508-76549527 MS.gene056299:intron 40.0%
ACCCATGAAGTTGTAGATGT+TGG + chr1.3:76548114-76548133 None:intergenic 40.0%
AGCTATTCCATGTGATGACA+AGG - chr1.3:76549024-76549043 MS.gene056299:intron 40.0%
CAAGGATGTCTATGTCTCAA+TGG + chr1.3:76549497-76549516 None:intergenic 40.0%
CACCAACATCTACAACTTCA+TGG - chr1.3:76548109-76548128 MS.gene056299:intron 40.0%
CACCATTAGGTACATGTCAA+AGG - chr1.3:76548675-76548694 MS.gene056299:intron 40.0%
CAGGAATGTGACTACTTCTT+TGG - chr1.3:76548354-76548373 MS.gene056299:intron 40.0%
CATCCTTGGGAGCTAATAAT+GGG - chr1.3:76549509-76549528 MS.gene056299:intron 40.0%
CATGAAGTTGTAGATGTTGG+TGG + chr1.3:76548111-76548130 None:intergenic 40.0%
CATTGAGACATAGACATCCT+TGG - chr1.3:76549495-76549514 MS.gene056299:intron 40.0%
CCAATGTTCATGCAGTACTT+TGG - chr1.3:76548983-76549002 MS.gene056299:intron 40.0%
GATATTGTGATTGTAGGAGC+TGG - chr1.3:76547125-76547144 MS.gene056299:intron 40.0%
GATCAAATCAACTAGTGAGC+TGG - chr1.3:76549287-76549306 MS.gene056299:intron 40.0%
GCTATTCCATGTGATGACAA+GGG - chr1.3:76549025-76549044 MS.gene056299:intron 40.0%
GTGTTGTGCATTAGAAGATG+GGG - chr1.3:76549607-76549626 MS.gene056299:intron 40.0%
TAAACACCCTTGTCATCACA+TGG + chr1.3:76549034-76549053 None:intergenic 40.0%
TAACGGTATGGGAAAATGCT+TGG - chr1.3:76548047-76548066 MS.gene056299:CDS 40.0%
TATTTCGTTTCAGCCTCTCT+TGG + chr1.3:76548319-76548338 None:intergenic 40.0%
TCTCGTGAACACGACATTTA+TGG - chr1.3:76547720-76547739 MS.gene056299:intron 40.0%
TGGAACAACCATCAAAACCA+AGG - chr1.3:76548747-76548766 MS.gene056299:intron 40.0%
TTCATGCAGTACTTTGGCAA+AGG - chr1.3:76548989-76549008 MS.gene056299:intron 40.0%
TTCCAATACACCGAACTTCA+CGG + chr1.3:76548612-76548631 None:intergenic 40.0%
TTTCCCATTATTAGCTCCCA+AGG + chr1.3:76549515-76549534 None:intergenic 40.0%
! GGTGTTGTGCATTAGAAGAT+GGG - chr1.3:76549606-76549625 MS.gene056299:intron 40.0%
! GTCAAAGGTTGTTGCTATTC+AGG - chr1.3:76548690-76548709 MS.gene056299:intron 40.0%
! GTGGATTTGCTTTAACGGTA+TGG - chr1.3:76548035-76548054 MS.gene056299:CDS 40.0%
! GTTGTTGCTATTCAGGAATC+TGG - chr1.3:76548697-76548716 MS.gene056299:intron 40.0%
!! AAGGTATTGATTGGGTGTGA+TGG - chr1.3:76548854-76548873 MS.gene056299:CDS 40.0%
!! CAGATTGGGCATTGAAAGTT+TGG - chr1.3:76547982-76548001 MS.gene056299:CDS 40.0%
!! CCAAAGTACTGCATGAACAT+TGG + chr1.3:76548986-76549005 None:intergenic 40.0%
!! GTGATGACAAGGGTGTTTAT+TGG - chr1.3:76549035-76549054 MS.gene056299:intron 40.0%
!! GTTGGTTCTATTCAGGAAAG+TGG - chr1.3:76549782-76549801 MS.gene056299:CDS 40.0%
ACATGGACTCCTATCAACCA+AGG - chr1.3:76549064-76549083 MS.gene056299:intron 45.0%
ACTAGGAAGCTCATTGGCAA+GGG + chr1.3:76548653-76548672 None:intergenic 45.0%
ATTGTAGGAGCTGGAATTGC+TGG - chr1.3:76547134-76547153 MS.gene056299:intron 45.0%
GGTATGGGAAAATGCTTGGA+AGG - chr1.3:76548051-76548070 MS.gene056299:intron 45.0%
TAAACTCTGTGGTGGCAAAG+TGG - chr1.3:76548879-76548898 MS.gene056299:CDS 45.0%
TCAACGAAGCCTCATACACA+GGG - chr1.3:76548909-76548928 MS.gene056299:CDS 45.0%
TCCAATACACCGAACTTCAC+GGG + chr1.3:76548611-76548630 None:intergenic 45.0%
TGATGGAGTAAACTCTGTGG+TGG - chr1.3:76548871-76548890 MS.gene056299:CDS 45.0%
TGCATATCTCCCTGTGTATG+AGG + chr1.3:76548921-76548940 None:intergenic 45.0%
TTCAACGAAGCCTCATACAC+AGG - chr1.3:76548908-76548927 MS.gene056299:CDS 45.0%
TTGTGCATTAGAAGATGGGG+TGG - chr1.3:76549610-76549629 MS.gene056299:intron 45.0%
! GAAGTTGTAGATGTTGGTGG+CGG + chr1.3:76548108-76548127 None:intergenic 45.0%
! GGGTGTTGTGCATTAGAAGA+TGG - chr1.3:76549605-76549624 MS.gene056299:intron 45.0%
! GTGTGATGGAGTAAACTCTG+TGG - chr1.3:76548868-76548887 MS.gene056299:CDS 45.0%
! GTTTCGCCGCTAAGTCTTTT+TGG - chr1.3:76547683-76547702 MS.gene056299:intron 45.0%
! TTTAGCGAGGTGTTTAGCTG+AGG - chr1.3:76549634-76549653 MS.gene056299:intron 45.0%
!! ATGTACCTAATGGTGCCACT+AGG + chr1.3:76548670-76548689 None:intergenic 45.0%
!! CATTGGTTCAAGCTTGTGAG+TGG + chr1.3:76548969-76548988 None:intergenic 45.0%
!!! TTTGGCAAAGGTTTTAGGGC+TGG - chr1.3:76549001-76549020 MS.gene056299:intron 45.0%
ACACAGGGAGATATGCAACG+AGG - chr1.3:76548924-76548943 MS.gene056299:intron 50.0%
ACAGGGAGATATGCAACGAG+GGG - chr1.3:76548926-76548945 MS.gene056299:intron 50.0%
AGATGACCTGATGCCAAGAG+AGG - chr1.3:76548303-76548322 MS.gene056299:intron 50.0%
AGCTTCCTAGTGGCACCATT+AGG - chr1.3:76548662-76548681 MS.gene056299:intron 50.0%
ATGATGCCTGATCTTGGCCA+AGG - chr1.3:76549581-76549600 MS.gene056299:intron 50.0%
CAACATCCTTGGGACTTCAC+AGG - chr1.3:76547162-76547181 MS.gene056299:intron 50.0%
CACAGGGAGATATGCAACGA+GGG - chr1.3:76548925-76548944 MS.gene056299:intron 50.0%
CACCCTATGATGCCTGATCT+TGG - chr1.3:76549575-76549594 MS.gene056299:intron 50.0%
CACTAGGAAGCTCATTGGCA+AGG + chr1.3:76548654-76548673 None:intergenic 50.0%
CTAATGCACAACACCCTCCT+TGG + chr1.3:76549601-76549620 None:intergenic 50.0%
CTTGCCAATGAGCTTCCTAG+TGG - chr1.3:76548652-76548671 MS.gene056299:intron 50.0%
GAAGTCCCAAGGATGTTGTG+AGG + chr1.3:76547160-76547179 None:intergenic 50.0%
GGCCAAGATCAGGCATCATA+GGG + chr1.3:76549580-76549599 None:intergenic 50.0%
TGGCCAAGATCAGGCATCAT+AGG + chr1.3:76549581-76549600 None:intergenic 50.0%
TTTCAGCCTCTCTTGGCATC+AGG + chr1.3:76548312-76548331 None:intergenic 50.0%
! AGAGTACCTGTGAAGTCCCA+AGG + chr1.3:76547171-76547190 None:intergenic 50.0%
! ATAGTGGAGCCCGTGAAGTT+CGG - chr1.3:76548599-76548618 MS.gene056299:intron 50.0%
! GGAAAATGCTTGGAAGGCGT+TGG - chr1.3:76548057-76548076 MS.gene056299:intron 50.0%
!!! AAGATGGGGTGGTTTTAGCG+AGG - chr1.3:76549621-76549640 MS.gene056299:intron 50.0%
ATGCCTGATCTTGGCCAAGG+AGG - chr1.3:76549584-76549603 MS.gene056299:intron 55.0%
GCGTTGGATGTCGTTGGTGT+TGG - chr1.3:76548073-76548092 MS.gene056299:intron 55.0%
TCTGTGGTGGCAAAGTGGCT+AGG - chr1.3:76548884-76548903 MS.gene056299:CDS 55.0%
TGCCTGATCTTGGCCAAGGA+GGG - chr1.3:76549585-76549604 MS.gene056299:intron 55.0%
! GCTGGCCTCACAACATCCTT+GGG - chr1.3:76547152-76547171 MS.gene056299:intron 55.0%
! TGCTGGCCTCACAACATCCT+TGG - chr1.3:76547151-76547170 MS.gene056299:intron 55.0%
!! GCCCGTGAAGTTCGGTGTAT+TGG - chr1.3:76548607-76548626 MS.gene056299:intron 55.0%
!! GGTGCCACTAGGAAGCTCAT+TGG + chr1.3:76548659-76548678 None:intergenic 55.0%
!! GTTGTAGATGTTGGTGGCGG+AGG + chr1.3:76548105-76548124 None:intergenic 55.0%
!! TGGAAGGCGTTGGATGTCGT+TGG - chr1.3:76548067-76548086 MS.gene056299:intron 55.0%
CACCCTCCTTGGCCAAGATC+AGG + chr1.3:76549590-76549609 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 76547104 76549819 76547104 ID=MS.gene056299
chr1.3 mRNA 76547104 76549819 76547104 ID=MS.gene056299.t1;Parent=MS.gene056299
chr1.3 exon 76549740 76549819 76549740 ID=MS.gene056299.t1.exon1;Parent=MS.gene056299.t1
chr1.3 CDS 76549740 76549819 76549740 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
chr1.3 exon 76548792 76548938 76548792 ID=MS.gene056299.t1.exon2;Parent=MS.gene056299.t1
chr1.3 CDS 76548792 76548938 76548792 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
chr1.3 exon 76548495 76548566 76548495 ID=MS.gene056299.t1.exon3;Parent=MS.gene056299.t1
chr1.3 CDS 76548495 76548566 76548495 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
chr1.3 exon 76548155 76548320 76548155 ID=MS.gene056299.t1.exon4;Parent=MS.gene056299.t1
chr1.3 CDS 76548155 76548320 76548155 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
chr1.3 exon 76547838 76548066 76547838 ID=MS.gene056299.t1.exon5;Parent=MS.gene056299.t1
chr1.3 CDS 76547838 76548066 76547838 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
chr1.3 exon 76547207 76547551 76547207 ID=MS.gene056299.t1.exon6;Parent=MS.gene056299.t1
chr1.3 CDS 76547207 76547551 76547207 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
chr1.3 exon 76547104 76547126 76547104 ID=MS.gene056299.t1.exon7;Parent=MS.gene056299.t1
chr1.3 CDS 76547104 76547126 76547104 ID=cds.MS.gene056299.t1;Parent=MS.gene056299.t1
Gene Sequence

>MS.gene056299

ATGGAAACTGTTATTGAAAAAGATATTGTGATTGTAGGAGCTGGAATTGCTGGCCTCACAACATCCTTGGGACTTCACAGGTACTCTTTCTCTCTATCTCTGTATAATCTACTTATAATTGATATTTATTTATTTATAATTGATATTTATAGAGCGCTGCTAACTTACACCCACCTAAAAACAATAAGGTGCAAGTTAGCAAACTACACTCACTTATAATTTACTAAAACACACTTTTGTTTATATTCTAATTATTTTTAAATAGAAGGGCAATTTTGTAACTAACTTAAAAAAGATCCTTAAAAAAAGAAACAAAAAAGACAATGACATGCTTAAAGTACAAAACATGTAATAAAGACAAACTTTTAAGGAAACAATATTTGGAATGATGAAAGTGGGTGTAAATTAGTGAAGGTTGCTAACTTGCACCTTAATAATACTTATAAAAATGAGTGTAAATAATCAAGTGGATGTAGGTTGCTAACTTGCACTTTAGTGTTTTTAGGTGGATGTAAGTTAGCAACCTCCATATTTATATACATGAAAATCACACATAAATGGCATGTAAGCGGATAATAAGTTTCGCCGCTAAGTCTTTTTGGATGATAAAATCAATTCTCGTGAACACGACATTTATGGACTTATGAGATATTACTCTGCTATTGGTGCAAGTATTTACGATCATTTTTGTAGATGATTAATTTTCACGACAAAATTAGCTGGCTAGTTTTAGTGGGTCTTCAATCTCAATCACATTTTTTTTTTTTTTCATATGTAAGATTTAAACTAAGTTTAGGAGACTCGAGTTCAATTTCACTAAGATGAACGTAAAATTGAAACTAATCCATCCATATGATTGATAGTAATATTGATGATTGCAGATTGGGCATTGAAAGTTTGGTGTTAGAATCTTCAGATAGTTTGAGAGTTAGTGGATTTGCTTTAACGGTATGGGAAAATGCTTGGAAGGCGTTGGATGTCGTTGGTGTTGGAGACATCCTCCGCCACCAACATCTACAACTTCATGGGTAAGTACAAAACATTCTACATCCTCCCTACTACATTTTCTAAAAATGAAAAAAAAATAAAACTAAACCCTAAAGAGTCAGTTATATAAAATAAAAAAAAAATGCATTTTAAGATCATGTCCTTTTATGAACATTTTCACATCATCTAGTAACTTGTTACCTCATTCTTTAAGATGACCTGATGCCAAGAGAGGCTGAAACGAAATAACTTGAATTGGAGTGCAGGAATGTGACTACTTCTTTGGTTATGGGGCAACAAACATCATCTACGTCTTTCATAGACAACAAAGGAAAGTAGTAAGTGCATTGAACATACTTTTATAAATTTCTACTATAAGTCTAGAAGTGTTACAATTTTTCTAAATACTCTGCCTCTATTTTATTATATATGGATACCATTGTTAATATGTAGAGGACCGTTCTTAAATTTGATATGAAGTTCTTACCATGATGTATGTTTTTATGCTATAGTGGAGCCCGTGAAGTTCGGTGTATTGGAAGAAATTTATTGTTGGAAGCCCTTGCCAATGAGCTTCCTAGTGGCACCATTAGGTACATGTCAAAGGTTGTTGCTATTCAGGAATCTGGCTTCTCTAAAATACTACATCTTGTTGATGGAACAACCATCAAAACCAAGGTAATTAAACAACAAAATATATGATGAAAACAACTTCCATTGAGAGTTCAAGTTAGTCTAAATTTATTGTTTGCAATTTGTGGAAAAGGTATTGATTGGGTGTGATGGAGTAAACTCTGTGGTGGCAAAGTGGCTAGGCTTCAACGAAGCCTCATACACAGGGAGATATGCAACGAGGGGTTATGCAGAGTTGAAGACCACTCACAAGCTTGAACCAATGTTCATGCAGTACTTTGGCAAAGGTTTTAGGGCTGGAGCTATTCCATGTGATGACAAGGGTGTTTATTGGTTTTTCACATGGACTCCTATCAACCAAGGTGAATAATACCCTTTCTTTTGCTTATACAAATTAAATAGTTTGTTTCAACCAATGTTTTAAAAATCAAATTAGAGAATGACGGTAAGACCACCTAATCATGATTCAATTTGTTCAAACGGCAAATAAAAAATAAAAAAGTATTAATAAAGTTAAAAATAAAGAATGTCAAGTGGTTTCAACCAATCTAAATTATAATCGGGATCAAATCAACTAGTGAGCTGGCCGATTCAATCCGATTATTAATCTAGAAAATAAAATAATTGTGCACTTCACCTGTCTTACAGATAAAGAGTTAGCACAAGACCCTGCTAAACTAAAACAATATGTGTTAAACAAGTTAGAGAAGATGCCAAATGATGTTAAACATTTCATAGAAAACACAGAATTAGATGCATTTCAATCAGTTCCATTGAGACATAGACATCCTTGGGAGCTAATAATGGGAAATACTAGTAAAGGCAATGTTTGTGTTGCTGGAGATGCTTTACACCCTATGATGCCTGATCTTGGCCAAGGAGGGTGTTGTGCATTAGAAGATGGGGTGGTTTTAGCGAGGTGTTTAGCTGAGGCTTTTTTGAAGAAACCAAAGGAAGAAGAAGAAGAAGAAGAATACAAAAGGATTGAGGAAGGTTTCAAGAAATATGCAAAGGAGAGAAGATGGAGATGCATTGATCTCATTATTGCAAATTATTTTGTTGGTTCTATTCAGGAAAGTGGTTCAAAATTGGTTAA

Protein sequence

>MS.gene056299.t1

METVIEKDIVIVGAGIAGLTTSLGLHRLGIESLVLESSDSLRVSGFALTVWENAWKALDVVGVGDILRHQHLQLHGNVTTSLVMGQQTSSTSFIDNKGKYGAREVRCIGRNLLLEALANELPSGTIRYMSKVVAIQESGFSKILHLVDGTTIKTKVLIGCDGVNSVVAKWLGFNEASYTGRYATRGYAELKTTHKLEPMFMQYFGKGFRAGAIPCDDKGVYWFFTWTPINQDKELAQDPAKLKQYVLNKLEKMPNDVKHFIENTELDAFQSVPLRHRHPWELIMGNTSKGNVCVAGDALHPMMPDLGQGGCCALEDGVVLARCLAEAFLKKPKEEEEEEEYKRIEEGKWFKIG