Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88662.t1 | XP_003610152.2 | 97.7 | 88 | 2 | 0 | 1 | 88 | 1 | 88 | 1.00E-40 | 175.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88662.t1 | Q9ZSU4 | 69.2 | 78 | 23 | 1 | 12 | 88 | 10 | 87 | 2.2e-23 | 109.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88662.t1 | G7JD11 | 97.7 | 88 | 2 | 0 | 1 | 88 | 1 | 88 | 7.5e-41 | 175.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052083 | MS.gene88662 | 0.821445 | 4.02E-53 | -1.69E-46 |
MS.gene053625 | MS.gene88662 | 0.807024 | 6.19E-50 | -1.69E-46 |
MS.gene055661 | MS.gene88662 | 0.837598 | 4.73E-57 | -1.69E-46 |
MS.gene055977 | MS.gene88662 | 0.833137 | 6.34E-56 | -1.69E-46 |
MS.gene056571 | MS.gene88662 | 0.812651 | 3.81E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88662.t1 | MTR_4g128570 | 96.629 | 89 | 3 | 0 | 1 | 89 | 1 | 89 | 5.64e-58 | 179 |
MS.gene88662.t1 | MTR_4g128410 | 78.378 | 74 | 16 | 0 | 16 | 89 | 10 | 83 | 2.07e-36 | 124 |
MS.gene88662.t1 | MTR_7g093530 | 78.378 | 74 | 16 | 0 | 16 | 89 | 9 | 82 | 3.70e-36 | 123 |
MS.gene88662.t1 | MTR_4g126920 | 87.302 | 63 | 8 | 0 | 27 | 89 | 21 | 83 | 4.61e-32 | 113 |
MS.gene88662.t1 | MTR_4g128580 | 83.871 | 62 | 10 | 0 | 28 | 89 | 23 | 84 | 2.28e-30 | 108 |
MS.gene88662.t1 | MTR_8g081040 | 62.791 | 86 | 30 | 1 | 4 | 89 | 6 | 89 | 3.17e-30 | 108 |
MS.gene88662.t1 | MTR_4g128400 | 60.714 | 84 | 32 | 1 | 6 | 89 | 4 | 86 | 2.47e-29 | 106 |
MS.gene88662.t1 | MTR_2g038860 | 67.105 | 76 | 25 | 0 | 14 | 89 | 9 | 84 | 2.74e-29 | 106 |
MS.gene88662.t1 | MTR_2g038705 | 67.105 | 76 | 25 | 0 | 14 | 89 | 9 | 84 | 2.74e-29 | 106 |
MS.gene88662.t1 | MTR_3g084620 | 59.551 | 89 | 33 | 2 | 1 | 89 | 1 | 86 | 6.34e-29 | 105 |
MS.gene88662.t1 | MTR_8g102220 | 63.855 | 83 | 25 | 2 | 6 | 88 | 9 | 86 | 6.87e-29 | 104 |
MS.gene88662.t1 | MTR_3g084630 | 64.103 | 78 | 27 | 1 | 12 | 89 | 10 | 86 | 3.16e-28 | 103 |
MS.gene88662.t1 | MTR_4g128590 | 56.962 | 79 | 17 | 2 | 12 | 89 | 11 | 73 | 6.55e-20 | 81.3 |
MS.gene88662.t1 | MTR_5g091730 | 52.564 | 78 | 37 | 0 | 12 | 89 | 9 | 86 | 2.80e-18 | 77.0 |
MS.gene88662.t1 | MTR_3g089540 | 53.030 | 66 | 31 | 0 | 24 | 89 | 23 | 88 | 1.67e-15 | 69.7 |
MS.gene88662.t1 | MTR_4g097640 | 47.541 | 61 | 32 | 0 | 29 | 89 | 30 | 90 | 2.13e-15 | 69.3 |
MS.gene88662.t1 | MTR_4g097670 | 47.541 | 61 | 32 | 0 | 29 | 89 | 30 | 90 | 2.13e-15 | 69.3 |
MS.gene88662.t1 | MTR_4g097700 | 40.506 | 79 | 43 | 1 | 15 | 89 | 49 | 127 | 2.45e-15 | 69.3 |
MS.gene88662.t1 | MTR_6g033085 | 43.210 | 81 | 43 | 1 | 12 | 89 | 10 | 90 | 1.88e-13 | 63.9 |
MS.gene88662.t1 | MTR_1g105900 | 40.000 | 75 | 45 | 0 | 15 | 89 | 18 | 92 | 3.61e-13 | 63.2 |
MS.gene88662.t1 | MTR_7g084770 | 45.763 | 59 | 32 | 0 | 31 | 89 | 32 | 90 | 4.43e-12 | 60.1 |
MS.gene88662.t1 | MTR_7g084760 | 45.763 | 59 | 32 | 0 | 31 | 89 | 32 | 90 | 4.70e-12 | 60.1 |
MS.gene88662.t1 | MTR_6g033055 | 40.230 | 87 | 46 | 2 | 6 | 89 | 7 | 90 | 5.15e-12 | 60.1 |
MS.gene88662.t1 | MTR_8g102910 | 43.038 | 79 | 41 | 2 | 12 | 88 | 1 | 77 | 8.31e-12 | 59.3 |
MS.gene88662.t1 | MTR_7g084750 | 45.763 | 59 | 32 | 0 | 31 | 89 | 32 | 90 | 9.97e-12 | 59.3 |
MS.gene88662.t1 | MTR_1g105495 | 39.024 | 82 | 42 | 1 | 16 | 89 | 12 | 93 | 1.28e-11 | 58.9 |
MS.gene88662.t1 | MTR_2g089140 | 38.750 | 80 | 47 | 1 | 10 | 89 | 4 | 81 | 4.89e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88662.t1 | AT5G57550 | 64.634 | 82 | 28 | 1 | 9 | 89 | 7 | 88 | 1.90e-30 | 108 |
MS.gene88662.t1 | AT4G25820 | 72.059 | 68 | 19 | 0 | 22 | 89 | 21 | 88 | 2.12e-29 | 106 |
MS.gene88662.t1 | AT5G57560 | 62.963 | 81 | 29 | 1 | 9 | 89 | 2 | 81 | 2.82e-29 | 105 |
MS.gene88662.t1 | AT4G25810 | 63.415 | 82 | 28 | 1 | 8 | 89 | 5 | 84 | 9.33e-29 | 104 |
MS.gene88662.t1 | AT5G57530 | 73.016 | 63 | 17 | 0 | 27 | 89 | 23 | 85 | 3.77e-27 | 100 |
MS.gene88662.t1 | AT5G57540 | 74.194 | 62 | 16 | 0 | 28 | 89 | 23 | 84 | 7.62e-27 | 99.8 |
MS.gene88662.t1 | AT4G30270 | 62.338 | 77 | 27 | 1 | 13 | 89 | 8 | 82 | 1.34e-26 | 98.6 |
MS.gene88662.t1 | AT4G14130 | 57.317 | 82 | 34 | 1 | 8 | 89 | 6 | 86 | 4.76e-26 | 97.8 |
MS.gene88662.t1 | AT3G23730 | 60.759 | 79 | 30 | 1 | 11 | 89 | 8 | 85 | 1.57e-25 | 96.3 |
MS.gene88662.t1 | AT2G18800 | 53.659 | 82 | 38 | 0 | 8 | 89 | 5 | 86 | 6.77e-25 | 95.1 |
MS.gene88662.t1 | AT5G48070 | 53.571 | 84 | 38 | 1 | 7 | 89 | 5 | 88 | 6.81e-24 | 92.0 |
MS.gene88662.t1 | AT4G30290 | 56.790 | 81 | 33 | 2 | 10 | 89 | 4 | 83 | 3.86e-16 | 71.2 |
MS.gene88662.t1 | AT4G30280 | 49.412 | 85 | 42 | 1 | 6 | 89 | 4 | 88 | 2.90e-15 | 68.9 |
MS.gene88662.t1 | AT4G37800 | 41.026 | 78 | 44 | 1 | 14 | 89 | 15 | 92 | 1.40e-14 | 67.0 |
MS.gene88662.t1 | AT1G65310 | 61.905 | 63 | 23 | 1 | 28 | 89 | 26 | 88 | 2.56e-14 | 66.2 |
MS.gene88662.t1 | AT1G65310 | 61.905 | 63 | 23 | 1 | 28 | 89 | 48 | 110 | 2.63e-14 | 66.6 |
MS.gene88662.t1 | AT5G65730 | 36.905 | 84 | 48 | 2 | 7 | 89 | 14 | 93 | 5.88e-14 | 65.5 |
MS.gene88662.t1 | AT1G11545 | 37.931 | 87 | 51 | 1 | 6 | 89 | 10 | 96 | 2.76e-13 | 63.5 |
MS.gene88662.t1 | AT4G28850 | 46.377 | 69 | 35 | 1 | 20 | 88 | 18 | 84 | 8.71e-13 | 62.4 |
MS.gene88662.t1 | AT2G14620 | 35.065 | 77 | 50 | 0 | 11 | 87 | 17 | 93 | 4.10e-12 | 60.5 |
MS.gene88662.t1 | AT5G13870 | 45.763 | 59 | 32 | 0 | 31 | 89 | 32 | 90 | 8.24e-11 | 56.6 |
MS.gene88662.t1 | AT5G13870 | 45.763 | 59 | 32 | 0 | 31 | 89 | 32 | 90 | 8.24e-11 | 56.6 |
MS.gene88662.t1 | AT5G13870 | 45.763 | 59 | 32 | 0 | 31 | 89 | 32 | 90 | 8.24e-11 | 56.6 |
Find 20 sgRNAs with CRISPR-Local
Find 20 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGTCCTCTTATCTCTAT+TGG | 0.164509 | 8.1:-4409374 | MS.gene88662:CDS |
CTCGACAAAGCCTCTGGTTC+TGG | 0.236949 | 8.1:-4409235 | MS.gene88662:CDS |
GCCAAAGAGATATTCATTCT+TGG | 0.330231 | 8.1:+4409204 | None:intergenic |
TCCAAGAATGAATATCTCTT+TGG | 0.372292 | 8.1:-4409205 | MS.gene88662:CDS |
AGAGATATTCATTCTTGGAT+TGG | 0.408705 | 8.1:+4409209 | None:intergenic |
TTGACCGTTGTCGAGTATCT+TGG | 0.435436 | 8.1:+4409273 | None:intergenic |
CTTTCCCTCGACAAAGCCTC+TGG | 0.461846 | 8.1:-4409241 | MS.gene88662:CDS |
ATGCAGCTCAAGCTTGTACC+TGG | 0.480284 | 8.1:-4409172 | MS.gene88662:CDS |
TCTCTCGCTGCAGAATTTCC+AGG | 0.481696 | 8.1:+4409154 | None:intergenic |
TTCATTACAACATATGCAGC+AGG | 0.518113 | 8.1:-4409340 | MS.gene88662:CDS |
ATCAGAACTTTGATATAACA+TGG | 0.536100 | 8.1:-4409309 | MS.gene88662:CDS |
TTTGATATAACATGGGGAGA+TGG | 0.571234 | 8.1:-4409301 | MS.gene88662:CDS |
TCAGAACTTTGATATAACAT+GGG | 0.603368 | 8.1:-4409308 | MS.gene88662:CDS |
TGCATATGTTGTAATGAAAG+TGG | 0.604062 | 8.1:+4409345 | None:intergenic |
CAGAACCAGAGGCTTTGTCG+AGG | 0.627145 | 8.1:+4409236 | None:intergenic |
AGAACCAGAGGCTTTGTCGA+GGG | 0.631194 | 8.1:+4409237 | None:intergenic |
GGATTGGAATCCAGAACCAG+AGG | 0.639024 | 8.1:+4409225 | None:intergenic |
CAGAACTTTGATATAACATG+GGG | 0.655512 | 8.1:-4409307 | MS.gene88662:CDS |
GCAATTATGAGTGTATGCCA+TGG | 0.758165 | 8.1:+4409405 | None:intergenic |
CGTGCCAAGATACTCGACAA+CGG | 0.804801 | 8.1:-4409277 | MS.gene88662:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATCAGAACTTTGATATAACA+TGG | - | chr8.1:4409238-4409257 | MS.gene88662:CDS | 25.0% |
! | TCAGAACTTTGATATAACAT+GGG | - | chr8.1:4409239-4409258 | MS.gene88662:CDS | 25.0% |
AGAGATATTCATTCTTGGAT+TGG | + | chr8.1:4409341-4409360 | None:intergenic | 30.0% | |
CAAAAACCAATAGAGATAAG+AGG | + | chr8.1:4409182-4409201 | None:intergenic | 30.0% | |
CAGAACTTTGATATAACATG+GGG | - | chr8.1:4409240-4409259 | MS.gene88662:CDS | 30.0% | |
TCCAAGAATGAATATCTCTT+TGG | - | chr8.1:4409342-4409361 | MS.gene88662:CDS | 30.0% | |
TGCATATGTTGTAATGAAAG+TGG | + | chr8.1:4409205-4409224 | None:intergenic | 30.0% | |
GCCAAAGAGATATTCATTCT+TGG | + | chr8.1:4409346-4409365 | None:intergenic | 35.0% | |
TTCATTACAACATATGCAGC+AGG | - | chr8.1:4409207-4409226 | MS.gene88662:CDS | 35.0% | |
TTTGATATAACATGGGGAGA+TGG | - | chr8.1:4409246-4409265 | MS.gene88662:CDS | 35.0% | |
CACTGTCCTCTTATCTCTAT+TGG | - | chr8.1:4409173-4409192 | MS.gene88662:CDS | 40.0% | |
TTGACCGTTGTCGAGTATCT+TGG | + | chr8.1:4409277-4409296 | None:intergenic | 45.0% | |
ATGCAGCTCAAGCTTGTACC+TGG | - | chr8.1:4409375-4409394 | MS.gene88662:CDS | 50.0% | |
CGTGCCAAGATACTCGACAA+CGG | - | chr8.1:4409270-4409289 | MS.gene88662:CDS | 50.0% | |
GGATTGGAATCCAGAACCAG+AGG | + | chr8.1:4409325-4409344 | None:intergenic | 50.0% | |
TCTCTCGCTGCAGAATTTCC+AGG | + | chr8.1:4409396-4409415 | None:intergenic | 50.0% | |
! | AGAACCAGAGGCTTTGTCGA+GGG | + | chr8.1:4409313-4409332 | None:intergenic | 50.0% |
CTTTCCCTCGACAAAGCCTC+TGG | - | chr8.1:4409306-4409325 | MS.gene88662:CDS | 55.0% | |
! | CAGAACCAGAGGCTTTGTCG+AGG | + | chr8.1:4409314-4409333 | None:intergenic | 55.0% |
! | CTCGACAAAGCCTCTGGTTC+TGG | - | chr8.1:4409312-4409331 | MS.gene88662:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 4409144 | 4409425 | 4409144 | ID=MS.gene88662 |
chr8.1 | mRNA | 4409144 | 4409425 | 4409144 | ID=MS.gene88662.t1;Parent=MS.gene88662 |
chr8.1 | exon | 4409144 | 4409425 | 4409144 | ID=MS.gene88662.t1.exon1;Parent=MS.gene88662.t1 |
chr8.1 | CDS | 4409144 | 4409425 | 4409144 | ID=cds.MS.gene88662.t1;Parent=MS.gene88662.t1 |
Gene Sequence |
Protein sequence |