AlfalfaGEDB | MS.gene057054

M. sativa cultivar XinJiangDaYe / MS.gene057054

KEGG: K00602
GO: GO:0003674 GO:0003824 GO:0003937 GO:0004643 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009165 GO:0009987 GO:0016740 GO:0016741 GO:0016742 GO:0016787 GO:0016810 GO:0016814 GO:0018130 GO:0019238 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01808.21 PF02142.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057054.t1	XP_004516578.1	91.9	606	39	2	1	596	1	606	0.00E+00	1107.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057054.t1	Q0AW31	49.7	525	242	9	74	596	2	506	2.8e-135	483.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057054.t1	A0A1S2Z7T1	91.9	606	39	2	1	596	1	606	0.0e+00	1107.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053630	MS.gene057054	0.822578	2.20E-53	-1.69E-46
MS.gene057054	MS.gene08829	0.82487	6.39E-54	-1.69E-46
MS.gene057054	MS.gene08982	0.826768	2.26E-54	-1.69E-46
MS.gene057054	MS.gene09264	0.825225	5.26E-54	-1.69E-46
MS.gene057054	MS.gene23330	0.815259	1.01E-51	-1.69E-46
MS.gene057054	MS.gene40106	0.816031	6.82E-52	-1.69E-46
MS.gene057054	MS.gene74889	0.800198	1.61E-48	-1.69E-46
MS.gene057054	MS.gene92224	0.807718	4.41E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057054.t1	MTR_5g095820	97.342	602	10	1	1	596	1	602	0.0	1211
MS.gene057054.t1	MTR_3g013710	91.639	598	44	3	1	596	1	594	0.0	1098

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057054.t1	AT2G35040	84.545	550	82	3	50	596	47	596	0.0	971
MS.gene057054.t1	AT2G35040	86.842	532	68	2	67	596	14	545	0.0	967

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Find 141 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAAACTCACCATTTC+AGG	0.153005	5.3:+77285595	None:intergenic
AAACTACATACCCAAGTAGT+TGG	0.445106	5.3:+77287708	None:intergenic
AAAGCTGGAGCTGATGTTAA+AGG	0.329196	5.3:-77282192	MS.gene057054:CDS
AAAGGGTTGCACAGAGAACA+CGG	0.598094	5.3:+77287787	None:intergenic
AAAGTAAACTCACCATTTCA+GGG	0.538777	5.3:+77285596	None:intergenic
AAATCTGCTTCATCTACTCA+TGG	0.573141	5.3:-77287535	MS.gene057054:intron
AACAGCTTGGAAAGATGCTG+TGG	0.633339	5.3:-77281572	MS.gene057054:intron
AACTCTCCACACGATTCGGT+TGG	0.553727	5.3:+77282232	None:intergenic
AACTGGAGGCATTGAATTTG+AGG	0.415684	5.3:-77284581	MS.gene057054:CDS
AAGAAGAAGAAGGAGAGTAA+AGG	0.483078	5.3:+77287769	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTAAACTCACCATTTC+AGG	+	chr5.3:77283659-77283678	None:intergenic	30.0%
AAAGTAAACTCACCATTTCA+GGG	+	chr5.3:77283658-77283677	None:intergenic	30.0%
AAGACACATACTTGAGTTTA+TGG	+	chr5.3:77282555-77282574	None:intergenic	30.0%
AAGGATGTTCTATGAAATAG+TGG	-	chr5.3:77286603-77286622	MS.gene057054:intron	30.0%
AATAAAAAATCCCCCTCATT+TGG	+	chr5.3:77283088-77283107	None:intergenic	30.0%
ACTATTAACACTTACCAAAG+GGG	+	chr5.3:77287112-77287131	None:intergenic	30.0%
AGAGTTTAAGAATAGCAATG+AGG	-	chr5.3:77287036-77287055	MS.gene057054:intron	30.0%
AGATTCACTATTGTTTCAAC+TGG	-	chr5.3:77283566-77283585	MS.gene057054:intron	30.0%
ATAAAAAATCCCCCTCATTT+GGG	+	chr5.3:77283087-77283106	None:intergenic	30.0%
ATCACTTTACAAATTGGCTA+TGG	+	chr5.3:77283838-77283857	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	77281438	77287835	77281438	ID=MS.gene057054
chr5.3	mRNA	77281438	77287835	77281438	ID=MS.gene057054.t1;Parent=MS.gene057054
chr5.3	exon	77287719	77287835	77287719	ID=MS.gene057054.t1.exon1;Parent=MS.gene057054.t1
chr5.3	CDS	77287719	77287835	77287719	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77287536	77287632	77287536	ID=MS.gene057054.t1.exon2;Parent=MS.gene057054.t1
chr5.3	CDS	77287536	77287632	77287536	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77285820	77285895	77285820	ID=MS.gene057054.t1.exon3;Parent=MS.gene057054.t1
chr5.3	CDS	77285820	77285895	77285820	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77285609	77285705	77285609	ID=MS.gene057054.t1.exon4;Parent=MS.gene057054.t1
chr5.3	CDS	77285609	77285705	77285609	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77285084	77285186	77285084	ID=MS.gene057054.t1.exon5;Parent=MS.gene057054.t1
chr5.3	CDS	77285084	77285186	77285084	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77284525	77284658	77284525	ID=MS.gene057054.t1.exon6;Parent=MS.gene057054.t1
chr5.3	CDS	77284525	77284658	77284525	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77284067	77284241	77284067	ID=MS.gene057054.t1.exon7;Parent=MS.gene057054.t1
chr5.3	CDS	77284067	77284241	77284067	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77283361	77283515	77283361	ID=MS.gene057054.t1.exon8;Parent=MS.gene057054.t1
chr5.3	CDS	77283361	77283515	77283361	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77282975	77283184	77282975	ID=MS.gene057054.t1.exon9;Parent=MS.gene057054.t1
chr5.3	CDS	77282975	77283184	77282975	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77282373	77282720	77282373	ID=MS.gene057054.t1.exon10;Parent=MS.gene057054.t1
chr5.3	CDS	77282373	77282720	77282373	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77282157	77282283	77282157	ID=MS.gene057054.t1.exon11;Parent=MS.gene057054.t1
chr5.3	CDS	77282157	77282283	77282157	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1
chr5.3	exon	77281438	77281589	77281438	ID=MS.gene057054.t1.exon12;Parent=MS.gene057054.t1
chr5.3	CDS	77281438	77281589	77281438	ID=cds.MS.gene057054.t1;Parent=MS.gene057054.t1

Gene Sequence

>MS.gene057054

ATGTTTGGTCTCGCCGCTTCCTCCACCCGTGTTCTCTGTGCAACCCTTTACTCTCCTTCTTCTTCTTCTCTCACTGCTAAACATCACTTTTCTTCTCATCATCTTCCAACTACTTGGGTATGTAGTTTTCTTCTTATTCATTTTTTACTACTTTTTACTTTGTTTTTGTTCAATGCTATTCATTTTGAAATGTGTATGTTCAGGTTTCTTCATCTTCACAGCGATTCAGGTGTATTCCTATCAAACCTATAGCTGGGACTCATACAATGTCTGCTTCAAAATCTGCTTCATCTACTCATGGTCATTTTTTGCTTAAACCCCTTTTTTATTTTCATTAATTTCATTTAGGGGTTTTTAGTTTCTATTGCTTTTTACCCTAAAATTAAATTAACAAAAATCAGTTTTTTATTAAAATGAGGTGATTTTTTAGTGCACCATAACCTTAAATTAAGTATTAAAAAAACTGTTTTTATCAAATGGGTTGTTTTTTACGTCACATATAACTGATTCATATATTTGTTCATATATAAGAAATAGGAAATTCATAACAGACTAGGATTTAGTTGTCCTCGTGAGCTTAGCTCAGTTGGTTGGGACAATGCATAAAATATGCAAGGTCCGGGTTCAAACCCCAGCCACTACCAAAAAAAAAAAAAAAGACTAGGATTTAGTTCATTTAACTGATTAGGCCTCTTTTAGTACAAAGTAAAATGGTTTTATGCCGATCAACTTGTATTACGTGCTTCAACTTATTATAACTAGCTTACTTAGTTATACTTAGATTCTGTTTGGTAAAAGATAGTGAATAGTTGATGAGTTAGCTTATAGCGGATAACTTTGTAGTGAATAGCTATTGATTTTGTAGTGTTTGGTATAATTAACGGTTGAACTAGCTTATAAATATGAAATAACATAAAAAAGATATATTTTAATTAATATTTAATTTTTTCCAATTAAGATTACAGGGGTAAAATTGAGAGAGAGGAAATGATAAGCTATAAGCTACTTGAATTAGCTTATCAAAACACGCTAAAAGCTAGTAAAAATAGACTTTAAGATTGTGAGAAAATGACGGTTACCAAATGGATCTTTTTTAGTCATAGGAGCTTATAAGCCATAAACTCAAGTATGTGTCTTGCCAAACAGACACTTAGTACTGTTTTTTCTCAAAGGACCAGTAGAAATAAGTGATTCAGTTCTTTACATCATAGTTTGCACAGTTTACTATGACCAATTTGCACCTAAAATAAGTGTTTTTATCAAATCTGTCAATGCACCAAAACTCTCTTCATATTTAGTCTTAAGATTGTTTGGTAATGAATCAATATGAACTCCAAATTGTAGAAAATTATGTTAGCAAGAGAGTCATTTACACCACCTTTCATCTGTAGAAAATTTTAGGCTTTGTTTGGGAGTTTGGAGGGGAAGGGAGGGGAGGGCTTTGGGGGGTTGGAAATATATAGAAAAATGGACAAAAAATTCACATTTTTTGAAAGAACAGTTTTTTAGAGAATGATAAACTAATACTTATGATTAATATACTTTTAATTTTAAGAATATTATAACAACATAGATTGAATTTGAAAAATTCATATAAACCCTCCATAACCCCCCAAACCCCTCCCCCAGTGCAATTTTTGAGTTCCCCCAAATGAGGGGGATTTTTTATTATGAGTAAAAAATTAACCTCCAAAGCCCTCTCCTCCCAATGTCTTCTATTTCTTCCACTTGCTCCTTCCTTTTTTCCAAAACCCTCCCCTCCCCTCCCCTCCAAACTCCCAAACAAAGCCTTAGTTCCAGTCCAGGGTGACTTGGACTCACCAGATTTATTTACATGATTTTAGACAATACGATGTTAACAGTTATGATGTTTTCTATTTTATAAAATAAATTTAAGAATAAAAATTCCTGGCATTTGGTGTTCTGTTGCTATGAAACAGGCAGCAAGCAAGCTTTGATATCGTTGTCAGACAAGAAGGATCTCGCATTTGTTGGAAACGGACTCCAAGAATTAGGGTAGTTATTACAATTAATGGATTTGTCGTTCATTTTTTAACATGTTAGAATATTATTATTTTCACACATTCGTGTTTTTTCATTACAATGATAGATTCTTTATTTTAATGTTAGATTCACTATTGTTTCAACTGGAGGAACAGCTTCTGCATTGGAGAGTGCTGGAGTCGCTGTTACTAAAGTTGAAGAGCTTACACAGTTCCCTGAAATGGTGAGTTTACTTTTAACTTCAGTTCTCCTTCTCGAAGTCTCATCTTGGATTTTGTATACCATCGGCACAAATCTAGAGATATTTTCTGTCAATGAACATTGCTTTTCTTTGTGTATTTCGATCAGTGTTATTAAATGGCAGCCATGGCGTGGAAGATTTTTTGAGAATGGCCATAGCCAATTTGTAAAGTGATTCCTGCCATTGGCCTCAATGGTGTGTTTCTATGACGGTTTTTTGGCCTTTTGCCATATTCTGTTATCCACCGTTGAAAACACTGATTCTGATCGTGTTTTATCATTACGAATCATAAATTTAGAGACCATAATAAGCCTTGCGTTTTGATGTTGAAATCTTGTACAAATTCGGCCTGTGTACTTTTTAACCCAATTACTAACAATGACTGTAATGGCTTTTCTACACAGCTTGACGGTCGTGTCAAAACTCTGCACCCTAACATACATGGAGGTATCCTTGCTCGAAGAGACCAAAAACATCATATTGAAGCTCTCAGTACACATGGAATTGGTAAGTTATGTTATCAGCTCTGTTAGGAAAGATTTAGTGATTAATGAGTTGGATCCAAATATGGTTTATGAATTATGATATAACATTATGGTGTAATTTGATCCATGTAGCCAACCCCACTTAGTGGGATAAGACTTGGTTGTTGTTGTTGTTGTATGTTATCAGCCCTGTTATAACCAGTGTTGTCAAATAGCAACTTTAGCCTAGCAGAATTTGAACGAATTGTCCTTGTTCTGCGATACGCTATTTACTATAAAGTGTTGTCAAATAGCAGCATAGCGGCACTGTAGTGTAGCAAAAATTTATACAAATTGCTATTTTTTGTGATATCCGATTGATAACGCTGGTCATAACAAATGCACTGTGCTATAAATTATGAATTTGAAGTGTTGTTCTACTGCGTTGCTAAAAGTTTTCCATTTCAGGCACTTTTGATGTTGTGGTGGTGAACTTGTATCCATTTTATGATAAAGTTACATCAACTGGAGGCATTGAATTTGAGGATGGAATTGAAAACATTGACATCGGTGGTCCAGCCATGATTCGAGCTGCTGCAAAGGTTGTTTATTTGACTGAAAAATGCAAATTTGTATAATTTGAAATGTTATTTTGCATTAAAAAGTTGCGTAAAATGGTTCAGAAGATTACCCTGCCCTTCTGGTGTTTCTTAAAAAGTTATTTCACTGAAAAAACATCATTGTTGGTTAAATACCATTAAACACTGGAAAAGAATAAAAAAAAAAGAACTCTTCATTGCATATTGTCTATGAGCTGAAATTTACTTTTTTCTTTCCTATTGAAATATCGTTCAAATATATGATGATTAATTTGTATTTGTGCAGAATCACAAAGATGTTTTGGTAGTGGTTGATTCAGAAGATTACCCCGCCCTTCTGGAATTTCTTAAAGGAAACCAAGACGAACAGTTCAGGCTAAAGCTTGGATGGAAAGCTTTTCAGCATGTTGCTTCGTATGATTCTGCAGTATCTGAGTGGCTGTGGAAGCAAAGTGCAGGAGGTACTGTACATGTTTGTGTAAATTGTGTTGTGAATTATTATACACGCAACAGTTACTAGAATATAATCCTAGATTGGAAAAGCATGTTCTACTCTTAGCAGATTAAATGGCAGACTTTTGACAACAAAAAAAAAAGATTAAATGGAAGACTTTAAATTTCATTTGTTTCTAGTTTAGATGATTGAGAAATCAATTAACTTGTTTGAAATGACATTTGATTCCAAAAAATAAGCAAGACCAGTAGACCACCAAAAATAAGATTATTATCATGTAAATAGGGTTATCATATCTTTTAAATAGGGATAGAATATTTTGCAATTATCTTATATATTGCTTTAAGCCTACTTAAAGAGTCTCTGTTGTGTAGTTGAAAACACACATTTTCACAATGTCTTTCTATTTTTCTCTCATTCAACATGTCATTATTATGGAGGTACTACAAAATACTTTAGAGAATATGGTTTTCTAATTGAAATATTTCAATTTTCAAGAACTATCAATAATGTAATGTGTGTTCTACAGAGTGACTTTTGTTCTCATTTCAATGACAGATAAATTTCCTCCGAGTTTGACAGTGCCTCTTTCACTCAAAAATTCTCTCCGTTATGGTGAAAATCCTCATCAAAAAGCTGCATTCTATGTTGACAAAAGACTTGCAGAGGTCAATGCTGGTGGAATTGCTACAGCTATCCAACACCATGGAAAGGTGCGAGTTGGCTACTAAGTACTTTCATCTAAAAATATAAAATTACTGGTGATTTTTTTTTTTTTAGTATATTTTAATAGATATTATATCATGTTTGGAGTTGAGAGCTTTTGACTGAAAAGTTGTATAATTTTCAATTAATATTTGTTTAAGTTAATGCCATAACATGAATGCAGGAAATGTCATATAATAACTACTTGGATGCTGATGCTGCTTGGAACTGTGTGTGCGAGTTTCGAAACCCCACATGTGTAGTTGTGAAGCATACTAATCCTTGCGGCGTAGCTTCACGCGATGATATTCTGGAAGCCTACAGACTAGCTGTTAAAGCTGATCCTGTCAGTGCATTTGGCGGAATTGTAGCTTTCAATGTGGAAGTTGATGAGGTAAATATCCCAAGTCAATTGAAAAAAGTCGAGTCCTACATTAAAAAGAGATAAGACCTGAGAAGAGTTTATATAGAATGACACCCCTCACCTTACAAGCCAGTGAGAATGAGTTAGGCCTAGTCGAAAACCTAAGAAAGATTATAGTGTTTATGAAGATTGAGGCTCTTTCCCTAGGTAACATTTTAAATTTCCATCTTGGCGAGGATGAGCAAATGACATTTTTTTTAACGCTTGTTTTTTTCTATGTTTAGGTTCTTGCTAAGGAAATAAGAGAATTTAGAAGCCCAACCGATGGGGAGACAAGGATGTTCTATGAAATAGTGGTTGCACCCAGCTATACAGAGAAGGGACTTGAGATTCTTCGTGGAAAGTCGAAGACTCTAAGGATTCTCGAAGCAAAAAAGAATGAAGCAGGAAAGCTTTCACTCAGACAAGTTGGTGGAGGGTGGCTAGCTCAGGATTCAGATGACTTGACTCCATCCGACATCAAGTTCAATGTGGTGTCGGAGAAGACTCCTCAAGTTGGTGAGCTTCGCGATGCGGAGTTTGCATGGTTGTGTGTGAAGCATGTCAAAAGCAATGCTATTGTGATAGCTAAGGTACTATCTTATATACATTATGAAACTTTTTTATGATTAAACGGAGGTGGTTGAAGAATCTGATCTCTTCTTTTGTTATCTTTTTGCAGGACAATTGTATGTTAGGTATGGGAAGCGGCCAACCGAATCGTGTGGAGAGTTTAAGAATAGCAATGAGGAAAGCTGGAGCTGATGTTAAAGGCGCAGCCTTGGCTAGTGATGCTTTCTTCCCCTTTGGTAAGTGTTAATAGTGATACCGTAATTCATTTTTTATTCTATGTTGTAAAGACGACTTGGTTATGGATAGATTAATGATTCTTCTCGGTGTAACCGAGAGGATAACATTGAGTAACGGTAAGTTGGTTGTGGATGGATTAATGATTCTTTTTGGTGCATATGTTGAGAGAAAATAACACTGAGTAACAATAAATTGCTATACCAGAAAAGGCTTACATATTTTTGGTCCTTGTAATGAACTCTTTTTCCGTTTTAGTCCCTATTTTTTTGGTCCTTGTTTGGTTTAGTCCCTAATATGATATTTTTTTTTACTCGCTTTACTGTTGTATAATAGTTATTTTGTTGGAGTCTTGTATCATGCAGGGACTAAAACCTAAAAAAAAATATTATAGGACTAAAATGAAAAATATTAAATTATAGGGATAAATACATTTAAGCCTATCAGAAAATAATTGCAAATTCTCAAGTACTCTTCAATGAAACTTTATTAAATTAGAACTTGAGAGATATAGAATACTCGTTTTTCTTTTGTTTTAACCAGAATGTGTCTTGACTATTTATGAACAGCTTGGAAAGATGCTGTGGAAGAAGCATGTGAAAGTGGGATTGGTGTTATTGCAGAACCAGGTGGTAGTATAAGAGATCAGGATGCTGTAGACTGTTGCAATAAGTATGGTGTTTCACTACTCTTTACAAATGTGAGGCACTTCAGGCACTGA

Protein sequence

>MS.gene057054.t1

MFGLAASSTRVLCATLYSPSSSSLTAKHHFSSHHLPTTWVSSSSQRFRCIPIKPIAGTHTMSASKSASSTHGSKQALISLSDKKDLAFVGNGLQELGFTIVSTGGTASALESAGVAVTKVEELTQFPEMLDGRVKTLHPNIHGGILARRDQKHHIEALSTHGIGTFDVVVVNLYPFYDKVTSTGGIEFEDGIENIDIGGPAMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDEQFRLKLGWKAFQHVASYDSAVSEWLWKQSAGDKFPPSLTVPLSLKNSLRYGENPHQKAAFYVDKRLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVCEFRNPTCVVVKHTNPCGVASRDDILEAYRLAVKADPVSAFGGIVAFNVEVDEVLAKEIREFRSPTDGETRMFYEIVVAPSYTEKGLEILRGKSKTLRILEAKKNEAGKLSLRQVGGGWLAQDSDDLTPSDIKFNVVSEKTPQVGELRDAEFAWLCVKHVKSNAIVIAKDNCMLGMGSGQPNRVESLRIAMRKAGADVKGAALASDAFFPFAWKDAVEEACESGIGVIAEPGGSIRDQDAVDCCNKYGVSLLFTNVRHFRH