AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40106


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40106.t1 MTR_4g092750 97.468 316 8 0 1 316 1 316 0.0 634
MS.gene40106.t1 MTR_4g092750 97.112 277 8 0 1 277 1 277 0.0 558
MS.gene40106.t1 MTR_4g092750 97.810 274 6 0 1 274 1 274 0.0 556
MS.gene40106.t1 MTR_7g114980 31.746 252 152 7 6 247 16 257 1.32e-23 98.6
MS.gene40106.t1 MTR_7g114980 28.667 300 179 8 6 280 16 305 1.38e-23 99.4
MS.gene40106.t1 MTR_7g114970 29.885 261 161 7 5 259 11 255 3.75e-23 97.1
MS.gene40106.t1 MTR_7g114970 29.885 261 161 7 5 259 11 255 4.55e-23 97.1
MS.gene40106.t1 MTR_7g114970 29.885 261 161 7 5 259 11 255 8.29e-23 97.1
MS.gene40106.t1 MTR_1g047250 26.948 308 187 11 1 280 1 298 3.32e-22 95.1
MS.gene40106.t1 MTR_7g114990 27.986 293 184 9 6 280 18 301 1.58e-21 93.6
MS.gene40106.t1 MTR_7g115010 31.250 240 143 7 6 243 14 233 4.63e-20 89.4
MS.gene40106.t1 MTR_1g102750 27.969 261 165 8 5 258 9 253 6.95e-20 89.0
MS.gene40106.t1 MTR_1g102750 27.969 261 165 8 5 258 9 253 8.85e-20 88.2
MS.gene40106.t1 MTR_7g114970 35.897 156 89 4 5 154 11 161 8.86e-20 86.3
MS.gene40106.t1 MTR_7g021850 30.556 216 136 7 5 215 8 214 6.86e-17 80.5
MS.gene40106.t1 MTR_7g021680 31.019 216 134 7 5 215 8 213 6.92e-17 80.5
MS.gene40106.t1 MTR_7g021820 31.019 216 134 7 5 215 8 213 6.92e-17 80.5
MS.gene40106.t1 MTR_8g088160 27.488 211 111 10 42 215 77 282 6.45e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40106.t1 AT4G33670 78.165 316 69 0 1 316 4 319 0.0 520
MS.gene40106.t1 AT1G04690 26.129 310 187 11 1 280 1 298 2.63e-21 92.8
MS.gene40106.t1 AT1G60750 29.021 286 178 8 5 280 12 282 6.70e-20 89.0
MS.gene40106.t1 AT1G60730 32.273 220 134 7 5 219 11 220 1.48e-18 85.5
MS.gene40106.t1 AT1G60680 31.222 221 136 6 5 219 11 221 3.80e-18 82.4
MS.gene40106.t1 AT5G53580 27.517 298 179 13 11 280 45 333 5.36e-18 84.0
MS.gene40106.t1 AT1G60680 31.222 221 136 6 5 219 11 221 8.72e-18 83.2
MS.gene40106.t1 AT1G60690 27.187 320 198 10 5 303 11 316 2.73e-17 81.6
MS.gene40106.t1 AT1G60710 30.455 220 138 7 5 219 11 220 1.23e-16 79.7
MS.gene40106.t1 AT1G60730 29.958 237 137 8 5 219 11 240 1.53e-15 76.6

Find 77 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTGCTTCCTTCAGTTTC+TGG 0.033628 4.3:+21423215 None:intergenic
CAGTGTCATGATATTGAATT+TGG 0.090600 4.3:-21423408 MS.gene40106:CDS
CTCGAAATTTGAAGATATTA+TGG 0.250466 4.3:-21423615 MS.gene40106:intron
GCAAGAGAACTTGCAGCTTC+TGG 0.255338 4.3:-21420849 MS.gene40106:CDS
TATTTACTTATGTTCTTGAT+AGG 0.294080 4.3:-21423153 MS.gene40106:CDS
GCAGTACAGCTTGTTAAATA+AGG 0.324806 4.3:-21422028 MS.gene40106:CDS
GACTCGTTTCATTGGGATTA+CGG 0.334830 4.3:-21423191 MS.gene40106:CDS
TGGGATTACGGGACTTCCTT+TGG 0.348113 4.3:-21423179 MS.gene40106:CDS
GGTGAAGCAGGATGCCATTC+AGG 0.355943 4.3:+21422974 None:intergenic
ACTCGTTTCATTGGGATTAC+GGG 0.365687 4.3:-21423190 MS.gene40106:CDS
TCTCCTCTCGGCAACGTCTT+CGG 0.372642 4.3:-21423784 MS.gene40106:CDS
TCCTGCTTCACCGGAACTTA+AGG 0.379403 4.3:-21422963 MS.gene40106:intron
AAACTAAGCTCCGTCGGGTT+CGG 0.379564 4.3:-21423811 MS.gene40106:CDS
GCAGGGAAGACTCGTTTCAT+TGG 0.381344 4.3:-21423199 MS.gene40106:CDS
TCCTTCAGTTTCTGGAGTGC+AGG 0.386056 4.3:+21423223 None:intergenic
CAGTGCTTCTCCGTTGGCGA+TGG 0.387532 4.3:-21423020 MS.gene40106:CDS
CACAAGTGTAGACGAGAGTT+TGG 0.388926 4.3:-21423463 MS.gene40106:CDS
TTACGTGAACTTGGAAGAAC+TGG 0.400346 4.3:-21423838 MS.gene40106:CDS
CAGGGAAGACTCGTTTCATT+GGG 0.402120 4.3:-21423198 MS.gene40106:CDS
GCTACAATGTATTCACTTCT+CGG 0.402496 4.3:+21423540 None:intergenic
CTCTGTCAATGATTCGACTT+TGG 0.415789 4.3:-21423086 MS.gene40106:CDS
ATTGACAGAGTGATGGCAAT+AGG 0.422905 4.3:+21423099 None:intergenic
CAGCAAGGGGTCAACTCTGC+TGG 0.427552 4.3:+21420751 None:intergenic
ACCTTAAGTTCCGGTGAAGC+AGG 0.436418 4.3:+21422962 None:intergenic
ATGGGTCTTCTCACTGAGGC+TGG 0.452747 4.3:-21423001 MS.gene40106:CDS
GTTTGCTTGTTCTTCTGAAA+CGG 0.454532 4.3:+21423759 None:intergenic
CTGAGGCTGGCCCTCCTGAA+TGG 0.457972 4.3:-21422988 MS.gene40106:CDS
AACACCCTTGGACTTCAGAT+AGG 0.459632 4.3:+21423051 None:intergenic
CTCCAGAAACTGAAGGAAGC+AGG 0.467577 4.3:-21423217 MS.gene40106:CDS
AAAATGGAGTTACGTGAACT+TGG 0.470953 4.3:-21423847 MS.gene40106:CDS
TGAATTTGGATCGTTAGATC+AGG 0.479668 4.3:-21423394 MS.gene40106:intron
TAGGGTTCCGCCTGGAACAT+TGG 0.482789 4.3:-21423134 MS.gene40106:CDS
ATTTACTTATGTTCTTGATA+GGG 0.486238 4.3:-21423152 MS.gene40106:CDS
TGGCATGAGATCTGTCGAAC+AGG 0.491310 4.3:-21421986 MS.gene40106:intron
TGTCAATGATTCGACTTTGG+AGG 0.493678 4.3:-21423083 MS.gene40106:CDS
CATTATCAGTGCTTCTCCGT+TGG 0.494180 4.3:-21423026 MS.gene40106:CDS
AGTATCACATCCAATGTTCC+AGG 0.498225 4.3:+21423124 None:intergenic
TGAATGGCATCCTGCTTCAC+CGG 0.501096 4.3:-21422972 MS.gene40106:CDS
GAAATCACATCAGTTCTTGT+TGG 0.502174 4.3:-21422006 MS.gene40106:CDS
GATTACGGGACTTCCTTTGG+AGG 0.507961 4.3:-21423176 MS.gene40106:CDS
GGGTTCGGAGCTTCTCCTCT+CGG 0.519474 4.3:-21423796 MS.gene40106:CDS
AGTGCTTCTCCGTTGGCGAT+GGG 0.519640 4.3:-21423019 MS.gene40106:CDS
TAAGACAAGACCTTAAGTTC+CGG 0.528236 4.3:+21422953 None:intergenic
GACTTAAACTAAGCTCCGTC+GGG 0.541712 4.3:-21423816 MS.gene40106:CDS
ACTGATAATGCCAACACCCT+TGG 0.547863 4.3:+21423039 None:intergenic
GTTCTTGATAGGGTTCCGCC+TGG 0.552103 4.3:-21423142 MS.gene40106:CDS
GGACTTAAACTAAGCTCCGT+CGG 0.552405 4.3:-21423817 MS.gene40106:CDS
CAAACTCTCGTCTACACTTG+TGG 0.552478 4.3:+21423464 None:intergenic
CAACTCTGCTGGATTCCGCT+AGG 0.566406 4.3:+21420762 None:intergenic
TATCTGAAGTCCAAGGGTGT+TGG 0.578204 4.3:-21423049 MS.gene40106:CDS
ACACCCTTGGACTTCAGATA+GGG 0.582023 4.3:+21423052 None:intergenic
TACATTGTAGCAACTAAGTG+TGG 0.594346 4.3:-21423528 MS.gene40106:CDS
TCCAGAAACTGAAGGAAGCA+GGG 0.594834 4.3:-21423216 MS.gene40106:CDS
GTCTGAGAAAGTGCTCGGAA+AGG 0.603040 4.3:-21423583 MS.gene40106:CDS
AGTGCCCTATCTGAAGTCCA+AGG 0.603565 4.3:-21423056 MS.gene40106:CDS
GAAGCAGGATGCCATTCAGG+AGG 0.605422 4.3:+21422977 None:intergenic
ACATAAGTAAATACCTCCAA+AGG 0.605576 4.3:+21423163 None:intergenic
AGTGTCGAAGAAGTTGATGC+CGG 0.606690 4.3:+21423711 None:intergenic
AGGAGAAGCTCCGAACCCGA+CGG 0.607761 4.3:+21423801 None:intergenic
ACACTGTCTGAGAAAGTGCT+CGG 0.611937 4.3:-21423588 MS.gene40106:CDS
GTGCCCTATCTGAAGTCCAA+GGG 0.616458 4.3:-21423055 MS.gene40106:CDS
TTGTAGCAACTAAGTGTGGA+AGG 0.618298 4.3:-21423524 MS.gene40106:CDS
TCGAATCATTGACAGAGTGA+TGG 0.619506 4.3:+21423092 None:intergenic
GTGAGAAGACCCATCGCCAA+CGG 0.621669 4.3:+21423010 None:intergenic
GAAATTTGAAGATATTATGG+AGG 0.631142 4.3:-21423612 MS.gene40106:intron
TCCTGCACTCCAGAAACTGA+AGG 0.632500 4.3:-21423224 MS.gene40106:CDS
GAAGCGGCTCTGTCAGAAGT+CGG 0.634736 4.3:-21420819 MS.gene40106:CDS
AGAAGCTGCAAGTTCTCTTG+CGG 0.638741 4.3:+21420851 None:intergenic
AAGTGTGGAAGGTACAAAGA+GGG 0.661768 4.3:-21423513 MS.gene40106:CDS
TAAGTGTGGAAGGTACAAAG+AGG 0.663345 4.3:-21423514 MS.gene40106:CDS
AAGCAGGATGCCATTCAGGA+GGG 0.673956 4.3:+21422978 None:intergenic
GTGTAGACGAGAGTTTGGAA+AGG 0.684238 4.3:-21423458 MS.gene40106:CDS
AGCTTCTGGAATCGACGAAG+CGG 0.691488 4.3:-21420835 MS.gene40106:CDS
GGCGATGGGTCTTCTCACTG+AGG 0.694882 4.3:-21423005 MS.gene40106:CDS
TTGAAAAGCGATACGAACAG+AGG 0.699253 4.3:+21423735 None:intergenic
GAACCGAAGACGTTGCCGAG+AGG 0.706655 4.3:+21423781 None:intergenic
ATCACATCCAATGTTCCAGG+CGG 0.724421 4.3:+21423127 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAATATAAAGTTTTAATT+TGG - chr4.3:21422229-21422248 MS.gene40106:intron 10.0%
!! ACATATATTATCAATTATAG+TGG + chr4.3:21423565-21423584 None:intergenic 15.0%
!!! TAATTTGCTACTAAATTTAT+CGG - chr4.3:21421931-21421950 MS.gene40106:intron 15.0%
!!! TATATTTTCTCAATTTAGAA+CGG + chr4.3:21423714-21423733 None:intergenic 15.0%
!!! TCTTGTCTTATTATTAATTA+CGG - chr4.3:21421665-21421684 MS.gene40106:intron 15.0%
!!! TTGATAATATATGTCAATAT+TGG - chr4.3:21423571-21423590 MS.gene40106:CDS 15.0%
!! ATTCGTTCAATATATCATAT+GGG + chr4.3:21422317-21422336 None:intergenic 20.0%
!! ATTTACTTATGTTCTTGATA+GGG - chr4.3:21421453-21421472 MS.gene40106:intron 20.0%
!! CAATACATGTTACTAAATTA+TGG + chr4.3:21423201-21423220 None:intergenic 20.0%
!! TATTTACTTATGTTCTTGAT+AGG - chr4.3:21421452-21421471 MS.gene40106:intron 20.0%
!! TTTGTATATGTAAATCAGAA+AGG - chr4.3:21422071-21422090 MS.gene40106:CDS 20.0%
!!! AATTTGCTACTAAATTTATC+GGG - chr4.3:21421932-21421951 MS.gene40106:intron 20.0%
!!! ATTAAGTTTTTTATCCAAAG+AGG - chr4.3:21421272-21421291 MS.gene40106:intron 20.0%
!!! GTTCTAAATTGAGAAAATAT+AGG - chr4.3:21423713-21423732 MS.gene40106:CDS 20.0%
!!! TGCTATTTTTCTTATACAAA+AGG - chr4.3:21421958-21421977 MS.gene40106:intron 20.0%
! AAATATGTACTTGTTTAGCT+TGG - chr4.3:21422922-21422941 MS.gene40106:intron 25.0%
! AAATGTCAATCTCTTAACAA+AGG + chr4.3:21423238-21423257 None:intergenic 25.0%
! AACAAGTACATAATTTACAG+AGG + chr4.3:21422828-21422847 None:intergenic 25.0%
! AATGCAATATTTAAGCAAGT+GGG - chr4.3:21423093-21423112 MS.gene40106:CDS 25.0%
! AATTATGTACTTGTTTAGCT+TGG - chr4.3:21422833-21422852 MS.gene40106:intron 25.0%
! AATTTCAGTTGTAACTTAAC+TGG - chr4.3:21421299-21421318 MS.gene40106:intron 25.0%
! CATATTTCATCAAAACTAAC+TGG - chr4.3:21422461-21422480 MS.gene40106:intron 25.0%
! CATTCGTTCAATATATCATA+TGG + chr4.3:21422318-21422337 None:intergenic 25.0%
! CTAAATTGAGAAAATATAGG+TGG - chr4.3:21423716-21423735 MS.gene40106:CDS 25.0%
! CTCGAAATTTGAAGATATTA+TGG - chr4.3:21420990-21421009 MS.gene40106:intron 25.0%
! GAAATTTGAAGATATTATGG+AGG - chr4.3:21420993-21421012 MS.gene40106:intron 25.0%
! GCAACTTATTGCAAAAAAAA+TGG - chr4.3:21422530-21422549 MS.gene40106:intron 25.0%
! TACACTATAATAAGCAAACA+TGG - chr4.3:21423388-21423407 MS.gene40106:intron 25.0%
! TGATCATAACATGCAAATTA+AGG + chr4.3:21421774-21421793 None:intergenic 25.0%
! TTCGTTCAATATATCATATG+GGG + chr4.3:21422316-21422335 None:intergenic 25.0%
!! AACAAGTACATATTTTACAG+AGG + chr4.3:21422917-21422936 None:intergenic 25.0%
!! GTTTATGTTGTTGTTGTAAA+AGG - chr4.3:21422008-21422027 MS.gene40106:CDS 25.0%
!! TTTTTGTGCAAAAGATGATT+TGG + chr4.3:21421900-21421919 None:intergenic 25.0%
AACTCCACAAATTATGTGAT+AGG + chr4.3:21423145-21423164 None:intergenic 30.0%
AACTGAAATTAGATCCTCTT+TGG + chr4.3:21421289-21421308 None:intergenic 30.0%
AACTGGTAACTGTATTTCAA+GGG - chr4.3:21421316-21421335 MS.gene40106:intron 30.0%
AATGAAAACAACAAAGAGAG+AGG + chr4.3:21422785-21422804 None:intergenic 30.0%
AATTGAGAAAATATAGGTGG+AGG - chr4.3:21423719-21423738 MS.gene40106:CDS 30.0%
ACATAAGTAAATACCTCCAA+AGG + chr4.3:21421445-21421464 None:intergenic 30.0%
AGAACCTATCACATAATTTG+TGG - chr4.3:21423138-21423157 MS.gene40106:CDS 30.0%
AGAACTAAGTTCTTATACAC+CGG + chr4.3:21422043-21422062 None:intergenic 30.0%
AGAACTACTTGCAAATCATT+TGG + chr4.3:21423343-21423362 None:intergenic 30.0%
ATACAAAAGGATAACGTTAG+TGG - chr4.3:21421971-21421990 MS.gene40106:intron 30.0%
ATCACTGCATTCAATATTCT+TGG - chr4.3:21422338-21422357 MS.gene40106:intron 30.0%
ATGTCAATATTGGAGTTCTT+GGG - chr4.3:21423581-21423600 MS.gene40106:CDS 30.0%
CAATGCAATATTTAAGCAAG+TGG - chr4.3:21423092-21423111 MS.gene40106:CDS 30.0%
CACTTGCTTAAATATTGCAT+TGG + chr4.3:21423094-21423113 None:intergenic 30.0%
CAGTGTCATGATATTGAATT+TGG - chr4.3:21421197-21421216 MS.gene40106:intron 30.0%
GAAATACAGAAAATTGAGCA+TGG - chr4.3:21422111-21422130 MS.gene40106:intron 30.0%
GAACTACTTGCAAATCATTT+GGG + chr4.3:21423342-21423361 None:intergenic 30.0%
TAACTGGTAACTGTATTTCA+AGG - chr4.3:21421315-21421334 MS.gene40106:intron 30.0%
TACAAAAGGATAACGTTAGT+GGG - chr4.3:21421972-21421991 MS.gene40106:intron 30.0%
TATGTCAATATTGGAGTTCT+TGG - chr4.3:21423580-21423599 MS.gene40106:CDS 30.0%
TCGTTCAATATATCATATGG+GGG + chr4.3:21422315-21422334 None:intergenic 30.0%
TGAAATGAAAAAAGAGAGAG+AGG + chr4.3:21420936-21420955 None:intergenic 30.0%
TTGTAAAAGGATAACGTTTC+CGG - chr4.3:21422021-21422040 MS.gene40106:CDS 30.0%
! AAAACTAGCTTACAACACTA+AGG + chr4.3:21421799-21421818 None:intergenic 30.0%
! AATCACAGATTTTCAGAACA+TGG + chr4.3:21422692-21422711 None:intergenic 30.0%
! CTCAATTTTCTGTATTTCTC+TGG + chr4.3:21422109-21422128 None:intergenic 30.0%
!! TGTTCTGAAAATCTGTGATT+TGG - chr4.3:21422692-21422711 MS.gene40106:intron 30.0%
!!! ATTTTTGACAGGCTTTAGAA+TGG + chr4.3:21423814-21423833 None:intergenic 30.0%
!!! CTGGTTCTATGTATTTTGTT+TGG - chr4.3:21422480-21422499 MS.gene40106:intron 30.0%
AAACATCATTCAGTACTAGG+AGG + chr4.3:21422379-21422398 None:intergenic 35.0%
ACTGGTAACTGTATTTCAAG+GGG - chr4.3:21421317-21421336 MS.gene40106:intron 35.0%
AGATTGACATTTGCATGCAT+TGG - chr4.3:21423246-21423265 MS.gene40106:intron 35.0%
CACAAACATCATTCAGTACT+AGG + chr4.3:21422382-21422401 None:intergenic 35.0%
CTACCAAGTGAACTCAAATT+AGG + chr4.3:21421734-21421753 None:intergenic 35.0%
CTTAACAAAGGACCTTCAAA+CGG + chr4.3:21423226-21423245 None:intergenic 35.0%
GAAATCACATCAGTTCTTGT+TGG - chr4.3:21422599-21422618 MS.gene40106:intron 35.0%
GCTACAATGTATTCACTTCT+CGG + chr4.3:21421068-21421087 None:intergenic 35.0%
GTTCATCTTTATCAAGTGAC+TGG + chr4.3:21423692-21423711 None:intergenic 35.0%
TAAGACAAGACCTTAAGTTC+CGG + chr4.3:21421655-21421674 None:intergenic 35.0%
TACATTGTAGCAACTAAGTG+TGG - chr4.3:21421077-21421096 MS.gene40106:intron 35.0%
TGAATTTGGATCGTTAGATC+AGG - chr4.3:21421211-21421230 MS.gene40106:intron 35.0%
! ACATGTATTGATCCGTTTGA+AGG - chr4.3:21423211-21423230 MS.gene40106:CDS 35.0%
! ACCAACAGGAGTATGAAAAA+TGG - chr4.3:21423442-21423461 MS.gene40106:CDS 35.0%
! AGACCTAATTTGAGTTCACT+TGG - chr4.3:21421728-21421747 MS.gene40106:intron 35.0%
! CTAGTACTGAATGATGTTTG+TGG - chr4.3:21422380-21422399 MS.gene40106:intron 35.0%
! GAATCACTGTTTTCTGCTTA+TGG - chr4.3:21422426-21422445 MS.gene40106:intron 35.0%
! GTTTGCTTGTTCTTCTGAAA+CGG + chr4.3:21420849-21420868 None:intergenic 35.0%
! TTTTGTGCCGTAAAACAAGT+GGG - chr4.3:21423163-21423182 MS.gene40106:CDS 35.0%
!! GCAGTACAGCTTGTTAAATA+AGG - chr4.3:21422577-21422596 MS.gene40106:intron 35.0%
!! TCCATTTTTCATACTCCTGT+TGG + chr4.3:21423446-21423465 None:intergenic 35.0%
!!! ATGATAGCCCACTTGTTTTA+CGG + chr4.3:21423173-21423192 None:intergenic 35.0%
AAAAATCAGTCATGGCCTAG+CGG - chr4.3:21423828-21423847 MS.gene40106:CDS 40.0%
AAGGATAACGTTAGTGGGAT+AGG - chr4.3:21421977-21421996 MS.gene40106:intron 40.0%
ACTCGTTTCATTGGGATTAC+GGG - chr4.3:21421415-21421434 MS.gene40106:intron 40.0%
AGAGAGAGGTAACAATCTGA+TGG + chr4.3:21422771-21422790 None:intergenic 40.0%
AGCCTGTCAAAAATCAGTCA+TGG - chr4.3:21423820-21423839 MS.gene40106:CDS 40.0%
AGGATAACGTTAGTGGGATA+GGG - chr4.3:21421978-21421997 MS.gene40106:intron 40.0%
AGTATCACATCCAATGTTCC+AGG + chr4.3:21421484-21421503 None:intergenic 40.0%
ATGTGATAGGTTCTTCGTCT+AGG + chr4.3:21423132-21423151 None:intergenic 40.0%
ATTGACAGAGTGATGGCAAT+AGG + chr4.3:21421509-21421528 None:intergenic 40.0%
CTCTGTCAATGATTCGACTT+TGG - chr4.3:21421519-21421538 MS.gene40106:intron 40.0%
CTTTGGTATCACTGTATAGC+TGG - chr4.3:21422744-21422763 MS.gene40106:intron 40.0%
GACTCGTTTCATTGGGATTA+CGG - chr4.3:21421414-21421433 MS.gene40106:intron 40.0%
TATGGGGGAAATCAGTAGTT+TGG + chr4.3:21422300-21422319 None:intergenic 40.0%
TCGAATCATTGACAGAGTGA+TGG + chr4.3:21421516-21421535 None:intergenic 40.0%
TGTCAATGATTCGACTTTGG+AGG - chr4.3:21421522-21421541 MS.gene40106:intron 40.0%
TTACGTGAACTTGGAAGAAC+TGG - chr4.3:21420767-21420786 MS.gene40106:CDS 40.0%
TTGAAAAGCGATACGAACAG+AGG + chr4.3:21420873-21420892 None:intergenic 40.0%
TTGTAGCAACTAAGTGTGGA+AGG - chr4.3:21421081-21421100 MS.gene40106:intron 40.0%
! AAGTGTGGAAGGTACAAAGA+GGG - chr4.3:21421092-21421111 MS.gene40106:intron 40.0%
! ACTGTTTTCTGCTTATGGTC+TGG - chr4.3:21422431-21422450 MS.gene40106:intron 40.0%
! GTTTTGTGCCGTAAAACAAG+TGG - chr4.3:21423162-21423181 MS.gene40106:CDS 40.0%
! TAAGTGTGGAAGGTACAAAG+AGG - chr4.3:21421091-21421110 MS.gene40106:intron 40.0%
!! GATACCAAAGCTTTAGAGCA+AGG + chr4.3:21422734-21422753 None:intergenic 40.0%
!! GTTCGTATCGCTTTTCAATC+CGG - chr4.3:21420875-21420894 MS.gene40106:intron 40.0%
!! TAAGCCTTGCTCTAAAGCTT+TGG - chr4.3:21422727-21422746 MS.gene40106:intron 40.0%
!! TGCAAAAGATGATTTGGTGC+AGG + chr4.3:21421894-21421913 None:intergenic 40.0%
AACACCCTTGGACTTCAGAT+AGG + chr4.3:21421557-21421576 None:intergenic 45.0%
ACACCCTTGGACTTCAGATA+GGG + chr4.3:21421556-21421575 None:intergenic 45.0%
AGAAGCTGCAAGTTCTCTTG+CGG + chr4.3:21423757-21423776 None:intergenic 45.0%
ATCACATCCAATGTTCCAGG+CGG + chr4.3:21421481-21421500 None:intergenic 45.0%
CAAACTCTCGTCTACACTTG+TGG + chr4.3:21421144-21421163 None:intergenic 45.0%
CACAAGTGTAGACGAGAGTT+TGG - chr4.3:21421142-21421161 MS.gene40106:intron 45.0%
CAGGGAAGACTCGTTTCATT+GGG - chr4.3:21421407-21421426 MS.gene40106:intron 45.0%
CATTATCAGTGCTTCTCCGT+TGG - chr4.3:21421579-21421598 MS.gene40106:intron 45.0%
GACTTAAACTAAGCTCCGTC+GGG - chr4.3:21420789-21420808 MS.gene40106:CDS 45.0%
GAGAGAGAGGAAATAGCGTA+CGG + chr4.3:21420923-21420942 None:intergenic 45.0%
GGACTTAAACTAAGCTCCGT+CGG - chr4.3:21420788-21420807 MS.gene40106:CDS 45.0%
GTGTAGACGAGAGTTTGGAA+AGG - chr4.3:21421147-21421166 MS.gene40106:intron 45.0%
TCCAGAAACTGAAGGAAGCA+GGG - chr4.3:21421389-21421408 MS.gene40106:intron 45.0%
TCCTCATACTCTCTACCAAC+AGG - chr4.3:21423428-21423447 MS.gene40106:CDS 45.0%
! ACTGATAATGCCAACACCCT+TGG + chr4.3:21421569-21421588 None:intergenic 45.0%
! GTTGGTAGAGAGTATGAGGA+AGG + chr4.3:21423428-21423447 None:intergenic 45.0%
! TATCTGAAGTCCAAGGGTGT+TGG - chr4.3:21421556-21421575 MS.gene40106:intron 45.0%
! TCCTGTTGGTAGAGAGTATG+AGG + chr4.3:21423432-21423451 None:intergenic 45.0%
!! ACACTGTCTGAGAAAGTGCT+CGG - chr4.3:21421017-21421036 MS.gene40106:intron 45.0%
!! AGTGTCGAAGAAGTTGATGC+CGG + chr4.3:21420897-21420916 None:intergenic 45.0%
!! GGCCATGACTGATTTTTGAC+AGG + chr4.3:21423825-21423844 None:intergenic 45.0%
!! TAAGCAAGTGGGCTATCATC+AGG - chr4.3:21423104-21423123 MS.gene40106:CDS 45.0%
AAACTAAGCTCCGTCGGGTT+CGG - chr4.3:21420794-21420813 MS.gene40106:CDS 50.0%
AAGCAGGATGCCATTCAGGA+GGG + chr4.3:21421630-21421649 None:intergenic 50.0%
ACCTTAAGTTCCGGTGAAGC+AGG + chr4.3:21421646-21421665 None:intergenic 50.0%
CTCCAGAAACTGAAGGAAGC+AGG - chr4.3:21421388-21421407 MS.gene40106:intron 50.0%
GATTACGGGACTTCCTTTGG+AGG - chr4.3:21421429-21421448 MS.gene40106:intron 50.0%
GCAAGAGAACTTGCAGCTTC+TGG - chr4.3:21423756-21423775 MS.gene40106:CDS 50.0%
GCAGGGAAGACTCGTTTCAT+TGG - chr4.3:21421406-21421425 MS.gene40106:intron 50.0%
TCCCTGCTTCCTTCAGTTTC+TGG + chr4.3:21421393-21421412 None:intergenic 50.0%
TCCTGCACTCCAGAAACTGA+AGG - chr4.3:21421381-21421400 MS.gene40106:intron 50.0%
TCCTGCTTCACCGGAACTTA+AGG - chr4.3:21421642-21421661 MS.gene40106:intron 50.0%
TGAATGGCATCCTGCTTCAC+CGG - chr4.3:21421633-21421652 MS.gene40106:intron 50.0%
TGGCATGAGATCTGTCGAAC+AGG - chr4.3:21422619-21422638 MS.gene40106:intron 50.0%
TGGGATTACGGGACTTCCTT+TGG - chr4.3:21421426-21421445 MS.gene40106:intron 50.0%
TTGGAGTTCTTGGGTGCACT+AGG - chr4.3:21423590-21423609 MS.gene40106:CDS 50.0%
! AGTGCCCTATCTGAAGTCCA+AGG - chr4.3:21421549-21421568 MS.gene40106:intron 50.0%
! GTGCCCTATCTGAAGTCCAA+GGG - chr4.3:21421550-21421569 MS.gene40106:intron 50.0%
!! AGCTTCTGGAATCGACGAAG+CGG - chr4.3:21423770-21423789 MS.gene40106:CDS 50.0%
!! GTCTGAGAAAGTGCTCGGAA+AGG - chr4.3:21421022-21421041 MS.gene40106:intron 50.0%
!! TCCTTCAGTTTCTGGAGTGC+AGG + chr4.3:21421385-21421404 None:intergenic 50.0%
AGTGCTTCTCCGTTGGCGAT+GGG - chr4.3:21421586-21421605 MS.gene40106:intron 55.0%
ATGGGTCTTCTCACTGAGGC+TGG - chr4.3:21421604-21421623 MS.gene40106:intron 55.0%
CAACTCTGCTGGATTCCGCT+AGG + chr4.3:21423846-21423865 None:intergenic 55.0%
GAAGCAGGATGCCATTCAGG+AGG + chr4.3:21421631-21421650 None:intergenic 55.0%
GAAGCGGCTCTGTCAGAAGT+CGG - chr4.3:21423786-21423805 MS.gene40106:CDS 55.0%
GGTGAAGCAGGATGCCATTC+AGG + chr4.3:21421634-21421653 None:intergenic 55.0%
GTGAGAAGACCCATCGCCAA+CGG + chr4.3:21421598-21421617 None:intergenic 55.0%
GTTCTTGATAGGGTTCCGCC+TGG - chr4.3:21421463-21421482 MS.gene40106:intron 55.0%
TAGGGTTCCGCCTGGAACAT+TGG - chr4.3:21421471-21421490 MS.gene40106:intron 55.0%
TCTCCTCTCGGCAACGTCTT+CGG - chr4.3:21420821-21420840 MS.gene40106:CDS 55.0%
AGGAGAAGCTCCGAACCCGA+CGG + chr4.3:21420807-21420826 None:intergenic 60.0%
CAGTGCTTCTCCGTTGGCGA+TGG - chr4.3:21421585-21421604 MS.gene40106:intron 60.0%
GAACCGAAGACGTTGCCGAG+AGG + chr4.3:21420827-21420846 None:intergenic 60.0%
GGCGATGGGTCTTCTCACTG+AGG - chr4.3:21421600-21421619 MS.gene40106:intron 60.0%
GGGTTCGGAGCTTCTCCTCT+CGG - chr4.3:21420809-21420828 MS.gene40106:CDS 60.0%
! CTGAGGCTGGCCCTCCTGAA+TGG - chr4.3:21421617-21421636 MS.gene40106:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 21420761 21423866 21420761 ID=MS.gene40106
chr4.3 mRNA 21420761 21423866 21420761 ID=MS.gene40106.t1;Parent=MS.gene40106
chr4.3 exon 21423706 21423866 21423706 ID=MS.gene40106.t1.exon1;Parent=MS.gene40106.t1
chr4.3 CDS 21423706 21423866 21423706 ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1
chr4.3 exon 21423395 21423623 21423395 ID=MS.gene40106.t1.exon2;Parent=MS.gene40106.t1
chr4.3 CDS 21423395 21423623 21423395 ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1
chr4.3 exon 21422964 21423263 21422964 ID=MS.gene40106.t1.exon3;Parent=MS.gene40106.t1
chr4.3 CDS 21422964 21423263 21422964 ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1
chr4.3 exon 21421987 21422115 21421987 ID=MS.gene40106.t1.exon4;Parent=MS.gene40106.t1
chr4.3 CDS 21421987 21422115 21421987 ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1
chr4.3 exon 21420761 21420892 21420761 ID=MS.gene40106.t1.exon5;Parent=MS.gene40106.t1
chr4.3 CDS 21420761 21420892 21420761 ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1
Gene Sequence

>MS.gene40106

ATGGAGTTACGTGAACTTGGAAGAACTGGACTTAAACTAAGCTCCGTCGGGTTCGGAGCTTCTCCTCTCGGCAACGTCTTCGGTTCCGTTTCAGAAGAACAAGCAAACTCCTCTGTTCGTATCGCTTTTCAATCCGGCATCAACTTCTTCGACACTTCTCCGTACGCTATTTCCTCTCTCTCTTTTTTCATTTCATTTTCTTCTTCTTCTTCGACTTTACTAACAGTTTCTCGAAATTTGAAGATATTATGGAGGAACACTGTCTGAGAAAGTGCTCGGAAAGGCGTTGAAAGCGTTAAACGCTCCGAGAAGTGAATACATTGTAGCAACTAAGTGTGGAAGGTACAAAGAGGGTTTTGATTTTAGTGCAGAGAGAGTCACCACAAGTGTAGACGAGAGTTTGGAAAGGTTGCAGCTTGATTATGTTGATATTCTTCAGTGTCATGATATTGAATTTGGATCGTTAGATCAGGTTTGTTACAAACAAAAATAGCTTATACATAAGTGCTTAATTAAGTTTTTTATCCAAAGAGGATCTAATTTCAGTTGTAACTTAACTGGTAACTGTATTTCAAGGGGTACTAACTGTTTGTCTTTGTTCAGATTGTTAATGAAACAATTCCTGCACTCCAGAAACTGAAGGAAGCAGGGAAGACTCGTTTCATTGGGATTACGGGACTTCCTTTGGAGGTATTTACTTATGTTCTTGATAGGGTTCCGCCTGGAACATTGGATGTGATACTTTCCTATTGCCATCACTCTGTCAATGATTCGACTTTGGAGGATATAGTGCCCTATCTGAAGTCCAAGGGTGTTGGCATTATCAGTGCTTCTCCGTTGGCGATGGGTCTTCTCACTGAGGCTGGCCCTCCTGAATGGCATCCTGCTTCACCGGAACTTAAGGTCTTGTCTTATTATTAATTACGGATAAGACAATGAAAATTTGATAATATTGTATCTGTTATTGAGACCTAATTTGAGTTCACTTGGTAGCAAACATTAAATAAGAACCTTAATTTGCATGTTATGATCACACCTTAGTGTTGTAAGCTAGTTTTGAGTTTGATTGCAAAAAACAAATCATGCTTGTGTGTGTATGTTTAAGTGAGTGAGAGAGAGTAAATAAGAAACCTGCACCAAATCATCTTTTGCACAAAAAAATAGTAATTGTAATTTGCTACTAAATTTATCGGGCACTGCTATTTTTCTTATACAAAAGGATAACGTTAGTGGGATAGGGCTTGATTGTTTATGTTGTTGTTGTAAAAGGATAACGTTTCCGGTGTATAAGAACTTAGTTCTGAGAGTATTTTGTATATGTAAATCAGAAAGGAAATAAGTTCTGCCAGAGAAATACAGAAAATTGAGCATGGAAATTTGAAATAGAATTCACATGTAGCAAAGAAACTCAAATAACTGTATGTATAAGATCTGAGAGTAGTTTCATAGAAGACAGAAAACAATGAAAGAAAATATAAAGTTTTAATTTGGAGTGCACGCATATTAAGAAAAGAAGACTCGAATCAAATTAATTAGCCAAACTACTGATTTCCCCCATATGATATATTGAACGAATGATCACTGCATTCAATATTCTTGGCAGATAAGTGAATTGCCTCCTAGTACTGAATGATGTTTGTGGACATTTTGAACAATGTCTCTCATGAATCACTGTTTTCTGCTTATGGTCTGGTACATTGCATATTTCATCAAAACTAACTGGTTCTATGTATTTTGTTTGGAATATGCAGTCTGCTTGTAGAGCTGCTGCAACTTATTGCAAAAAAAATGGAAAAAACATTTCAAAGTTAGCAATGCAGTACAGCTTGTTAAATAAGGAAATCACATCAGTTCTTGTTGGCATGAGATCTGTCGAACAGGTTCTGTTTCATCTTCATAATTTGTCATATTTAATTGCATACATACATCCATGTTCTGAAAATCTGTGATTTGGTGAATAGTGCATTAAGCCTTGCTCTAAAGCTTTGGTATCACTGTATAGCTGGTCTATCAGATTGTTACCTCTCTCTTTGTTGTTTTCATTAAAACATATATGAGCACTTTCCTCTGTAAATTATGTACTTGTTTAGCTTGGTCCATCAGATTGTTACCTCTCTCTTTGTTGTTTTCATTAAAACATATATGAGCACTTTCCTCTGTAAAATATGTACTTGTTTAGCTTGGTCTATCAGATTGTTACCTCTCTCTTTGTTGTTTTCATTGAAACATATATGAGCACTTTCCTCTGTAAAATATGTACTTGTTTTTTCTTCTATCTTTCTCATACTAAACTAATCAAAGAGCAAGTCAAAAGTTTAAAGAAATGTATGCCAATGCAATATTTAAGCAAGTGGGCTATCATCAGGAACCTAGACGAAGAACCTATCACATAATTTGTGGAGTTTTGTGCCGTAAAACAAGTGGGCTATCATCTACTCCATAATTTAGTAACATGTATTGATCCGTTTGAAGGTCCTTTGTTAAGAGATTGACATTTGCATGCATTGGCTTTAAAATTTTCTATAATTTAGCTGTAAGATCGTTTTTAAGTTTTTGCAAGCAGCAGAAGTTTTTTAGACCCAAATGATTTGCAAGTAGTTCTATTGTTCATGCTAACATAGTTATATTACACTATAATAAGCAAACATGGTTGTTTACTCTTGTCCTTCCTCATACTCTCTACCAACAGGAGTATGAAAAATGGAAAAATTTCTCGCATAAACATAGTGCACTCAGATCAATAATGTAATGTTGACACATTATTAATTATTGATAGACAGTCACAGTTGATCGATGATTAACCACTATAATTGATAATATATGTCAATATTGGAGTTCTTGGGTGCACTAGGCTTATGCAAGAATTATATACGAGTTTCTCATATCTCAAGTACAATTTCTCTCATATCTCAAGAACAATTTGTTAGACCAGTCACTTGATAAAGATGAACCGTTCTAAATTGAGAAAATATAGGTGGAGGAAAATGTTACTGCCGCAAGAGAACTTGCAGCTTCTGGAATCGACGAAGCGGCTCTGTCAGAAGTCGGAACCATTCTAAAGCCTGTCAAAAATCAGTCATGGCCTAGCGGAATCCAGCAGAGTTGA

Protein sequence

>MS.gene40106.t1

MELRELGRTGLKLSSVGFGASPLGNVFGSVSEEQANSSVRIAFQSGINFFDTSPYYGGTLSEKVLGKALKALNAPRSEYIVATKCGRYKEGFDFSAERVTTSVDESLERLQLDYVDILQCHDIEFGSLDQIVNETIPALQKLKEAGKTRFIGITGLPLEVFTYVLDRVPPGTLDVILSYCHHSVNDSTLEDIVPYLKSKGVGIISASPLAMGLLTEAGPPEWHPASPELKSACRAAATYCKKNGKNISKLAMQYSLLNKEITSVLVGMRSVEQVEENVTAARELAASGIDEAALSEVGTILKPVKNQSWPSGIQQS