Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40106.t1 | XP_003608332.1 | 97.5 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 1.10E-169 | 605.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40106.t1 | O81884 | 78.2 | 316 | 69 | 0 | 1 | 316 | 4 | 319 | 4.4e-140 | 498.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40106.t1 | G7JTZ5 | 97.5 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 7.7e-170 | 605.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049151 | MS.gene40106 | 0.804636 | 1.96E-49 | -1.69E-46 |
MS.gene049260 | MS.gene40106 | 0.82531 | 5.03E-54 | -1.69E-46 |
MS.gene049297 | MS.gene40106 | 0.817051 | 4.03E-52 | -1.69E-46 |
MS.gene049382 | MS.gene40106 | 0.827926 | 1.19E-54 | -1.69E-46 |
MS.gene049758 | MS.gene40106 | 0.869037 | 4.18E-66 | -1.69E-46 |
MS.gene050438 | MS.gene40106 | 0.826446 | 2.70E-54 | -1.69E-46 |
MS.gene050558 | MS.gene40106 | 0.831813 | 1.35E-55 | -1.69E-46 |
MS.gene050586 | MS.gene40106 | 0.80937 | 1.96E-50 | -1.69E-46 |
MS.gene050623 | MS.gene40106 | -0.803983 | 2.69E-49 | -1.69E-46 |
MS.gene050762 | MS.gene40106 | 0.812143 | 4.92E-51 | -1.69E-46 |
MS.gene050763 | MS.gene40106 | 0.814485 | 1.50E-51 | -1.69E-46 |
MS.gene050807 | MS.gene40106 | 0.834375 | 3.11E-56 | -1.69E-46 |
MS.gene050808 | MS.gene40106 | 0.81562 | 8.42E-52 | -1.69E-46 |
MS.gene050815 | MS.gene40106 | 0.802388 | 5.75E-49 | -1.69E-46 |
MS.gene050987 | MS.gene40106 | 0.815176 | 1.06E-51 | -1.69E-46 |
MS.gene051626 | MS.gene40106 | 0.82089 | 5.40E-53 | -1.69E-46 |
MS.gene051662 | MS.gene40106 | 0.883177 | 5.60E-71 | -1.69E-46 |
MS.gene051663 | MS.gene40106 | 0.879484 | 1.20E-69 | -1.69E-46 |
MS.gene051789 | MS.gene40106 | 0.831037 | 2.10E-55 | -1.69E-46 |
MS.gene052115 | MS.gene40106 | 0.808703 | 2.72E-50 | -1.69E-46 |
MS.gene052254 | MS.gene40106 | 0.807059 | 6.08E-50 | -1.69E-46 |
MS.gene052256 | MS.gene40106 | 0.820833 | 5.56E-53 | -1.69E-46 |
MS.gene052302 | MS.gene40106 | 0.842692 | 2.21E-58 | -1.69E-46 |
MS.gene052376 | MS.gene40106 | 0.842342 | 2.74E-58 | -1.69E-46 |
MS.gene052665 | MS.gene40106 | 0.839149 | 1.88E-57 | -1.69E-46 |
MS.gene052856 | MS.gene40106 | 0.805992 | 1.02E-49 | -1.69E-46 |
MS.gene053074 | MS.gene40106 | 0.810074 | 1.38E-50 | -1.69E-46 |
MS.gene053132 | MS.gene40106 | 0.805833 | 1.10E-49 | -1.69E-46 |
MS.gene053184 | MS.gene40106 | 0.80429 | 2.32E-49 | -1.69E-46 |
MS.gene053437 | MS.gene40106 | 0.814511 | 1.48E-51 | -1.69E-46 |
MS.gene053630 | MS.gene40106 | 0.932671 | 6.00E-95 | -1.69E-46 |
MS.gene053836 | MS.gene40106 | 0.847535 | 1.09E-59 | -1.69E-46 |
MS.gene054379 | MS.gene40106 | 0.812027 | 5.21E-51 | -1.69E-46 |
MS.gene054667 | MS.gene40106 | 0.800304 | 1.53E-48 | -1.69E-46 |
MS.gene054930 | MS.gene40106 | 0.809705 | 1.66E-50 | -1.69E-46 |
MS.gene054942 | MS.gene40106 | 0.832888 | 7.31E-56 | -1.69E-46 |
MS.gene055133 | MS.gene40106 | 0.813346 | 2.68E-51 | -1.69E-46 |
MS.gene055422 | MS.gene40106 | 0.818496 | 1.90E-52 | -1.69E-46 |
MS.gene055712 | MS.gene40106 | 0.822919 | 1.83E-53 | -1.69E-46 |
MS.gene055816 | MS.gene40106 | -0.811578 | 6.53E-51 | -1.69E-46 |
MS.gene056069 | MS.gene40106 | -0.846135 | 2.63E-59 | -1.69E-46 |
MS.gene056760 | MS.gene40106 | 0.826941 | 2.06E-54 | -1.69E-46 |
MS.gene056875 | MS.gene40106 | 0.838413 | 2.92E-57 | -1.69E-46 |
MS.gene057054 | MS.gene40106 | 0.816031 | 6.82E-52 | -1.69E-46 |
MS.gene057057 | MS.gene40106 | 0.803085 | 4.13E-49 | -1.69E-46 |
MS.gene057260 | MS.gene40106 | 0.886174 | 4.30E-72 | -1.69E-46 |
MS.gene057439 | MS.gene40106 | 0.847686 | 9.88E-60 | -1.69E-46 |
MS.gene057754 | MS.gene40106 | 0.831942 | 1.25E-55 | -1.69E-46 |
MS.gene058182 | MS.gene40106 | 0.812617 | 3.87E-51 | -1.69E-46 |
MS.gene058236 | MS.gene40106 | 0.800945 | 1.14E-48 | -1.69E-46 |
MS.gene058661 | MS.gene40106 | -0.811039 | 8.55E-51 | -1.69E-46 |
MS.gene058749 | MS.gene40106 | 0.800177 | 1.63E-48 | -1.69E-46 |
MS.gene058851 | MS.gene40106 | 0.819882 | 9.20E-53 | -1.69E-46 |
MS.gene058906 | MS.gene40106 | 0.83091 | 2.25E-55 | -1.69E-46 |
MS.gene058982 | MS.gene40106 | 0.83285 | 7.47E-56 | -1.69E-46 |
MS.gene059518 | MS.gene40106 | 0.801004 | 1.10E-48 | -1.69E-46 |
MS.gene059899 | MS.gene40106 | 0.826279 | 2.96E-54 | -1.69E-46 |
MS.gene060084 | MS.gene40106 | 0.815755 | 7.86E-52 | -1.69E-46 |
MS.gene060476 | MS.gene40106 | 0.844336 | 8.05E-59 | -1.69E-46 |
MS.gene060480 | MS.gene40106 | 0.823195 | 1.58E-53 | -1.69E-46 |
MS.gene061113 | MS.gene40106 | 0.836441 | 9.34E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene40106 | MS.gene062500 | PPI |
MS.gene53676 | MS.gene40106 | PPI |
MS.gene061628 | MS.gene40106 | PPI |
MS.gene40106 | MS.gene96904 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40106.t1 | MTR_4g092750 | 97.468 | 316 | 8 | 0 | 1 | 316 | 1 | 316 | 0.0 | 634 |
MS.gene40106.t1 | MTR_4g092750 | 97.112 | 277 | 8 | 0 | 1 | 277 | 1 | 277 | 0.0 | 558 |
MS.gene40106.t1 | MTR_4g092750 | 97.810 | 274 | 6 | 0 | 1 | 274 | 1 | 274 | 0.0 | 556 |
MS.gene40106.t1 | MTR_7g114980 | 31.746 | 252 | 152 | 7 | 6 | 247 | 16 | 257 | 1.32e-23 | 98.6 |
MS.gene40106.t1 | MTR_7g114980 | 28.667 | 300 | 179 | 8 | 6 | 280 | 16 | 305 | 1.38e-23 | 99.4 |
MS.gene40106.t1 | MTR_7g114970 | 29.885 | 261 | 161 | 7 | 5 | 259 | 11 | 255 | 3.75e-23 | 97.1 |
MS.gene40106.t1 | MTR_7g114970 | 29.885 | 261 | 161 | 7 | 5 | 259 | 11 | 255 | 4.55e-23 | 97.1 |
MS.gene40106.t1 | MTR_7g114970 | 29.885 | 261 | 161 | 7 | 5 | 259 | 11 | 255 | 8.29e-23 | 97.1 |
MS.gene40106.t1 | MTR_1g047250 | 26.948 | 308 | 187 | 11 | 1 | 280 | 1 | 298 | 3.32e-22 | 95.1 |
MS.gene40106.t1 | MTR_7g114990 | 27.986 | 293 | 184 | 9 | 6 | 280 | 18 | 301 | 1.58e-21 | 93.6 |
MS.gene40106.t1 | MTR_7g115010 | 31.250 | 240 | 143 | 7 | 6 | 243 | 14 | 233 | 4.63e-20 | 89.4 |
MS.gene40106.t1 | MTR_1g102750 | 27.969 | 261 | 165 | 8 | 5 | 258 | 9 | 253 | 6.95e-20 | 89.0 |
MS.gene40106.t1 | MTR_1g102750 | 27.969 | 261 | 165 | 8 | 5 | 258 | 9 | 253 | 8.85e-20 | 88.2 |
MS.gene40106.t1 | MTR_7g114970 | 35.897 | 156 | 89 | 4 | 5 | 154 | 11 | 161 | 8.86e-20 | 86.3 |
MS.gene40106.t1 | MTR_7g021850 | 30.556 | 216 | 136 | 7 | 5 | 215 | 8 | 214 | 6.86e-17 | 80.5 |
MS.gene40106.t1 | MTR_7g021680 | 31.019 | 216 | 134 | 7 | 5 | 215 | 8 | 213 | 6.92e-17 | 80.5 |
MS.gene40106.t1 | MTR_7g021820 | 31.019 | 216 | 134 | 7 | 5 | 215 | 8 | 213 | 6.92e-17 | 80.5 |
MS.gene40106.t1 | MTR_8g088160 | 27.488 | 211 | 111 | 10 | 42 | 215 | 77 | 282 | 6.45e-13 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40106.t1 | AT4G33670 | 78.165 | 316 | 69 | 0 | 1 | 316 | 4 | 319 | 0.0 | 520 |
MS.gene40106.t1 | AT1G04690 | 26.129 | 310 | 187 | 11 | 1 | 280 | 1 | 298 | 2.63e-21 | 92.8 |
MS.gene40106.t1 | AT1G60750 | 29.021 | 286 | 178 | 8 | 5 | 280 | 12 | 282 | 6.70e-20 | 89.0 |
MS.gene40106.t1 | AT1G60730 | 32.273 | 220 | 134 | 7 | 5 | 219 | 11 | 220 | 1.48e-18 | 85.5 |
MS.gene40106.t1 | AT1G60680 | 31.222 | 221 | 136 | 6 | 5 | 219 | 11 | 221 | 3.80e-18 | 82.4 |
MS.gene40106.t1 | AT5G53580 | 27.517 | 298 | 179 | 13 | 11 | 280 | 45 | 333 | 5.36e-18 | 84.0 |
MS.gene40106.t1 | AT1G60680 | 31.222 | 221 | 136 | 6 | 5 | 219 | 11 | 221 | 8.72e-18 | 83.2 |
MS.gene40106.t1 | AT1G60690 | 27.187 | 320 | 198 | 10 | 5 | 303 | 11 | 316 | 2.73e-17 | 81.6 |
MS.gene40106.t1 | AT1G60710 | 30.455 | 220 | 138 | 7 | 5 | 219 | 11 | 220 | 1.23e-16 | 79.7 |
MS.gene40106.t1 | AT1G60730 | 29.958 | 237 | 137 | 8 | 5 | 219 | 11 | 240 | 1.53e-15 | 76.6 |
Find 77 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCCTGCTTCCTTCAGTTTC+TGG | 0.033628 | 4.3:+21423215 | None:intergenic |
CAGTGTCATGATATTGAATT+TGG | 0.090600 | 4.3:-21423408 | MS.gene40106:CDS |
CTCGAAATTTGAAGATATTA+TGG | 0.250466 | 4.3:-21423615 | MS.gene40106:intron |
GCAAGAGAACTTGCAGCTTC+TGG | 0.255338 | 4.3:-21420849 | MS.gene40106:CDS |
TATTTACTTATGTTCTTGAT+AGG | 0.294080 | 4.3:-21423153 | MS.gene40106:CDS |
GCAGTACAGCTTGTTAAATA+AGG | 0.324806 | 4.3:-21422028 | MS.gene40106:CDS |
GACTCGTTTCATTGGGATTA+CGG | 0.334830 | 4.3:-21423191 | MS.gene40106:CDS |
TGGGATTACGGGACTTCCTT+TGG | 0.348113 | 4.3:-21423179 | MS.gene40106:CDS |
GGTGAAGCAGGATGCCATTC+AGG | 0.355943 | 4.3:+21422974 | None:intergenic |
ACTCGTTTCATTGGGATTAC+GGG | 0.365687 | 4.3:-21423190 | MS.gene40106:CDS |
TCTCCTCTCGGCAACGTCTT+CGG | 0.372642 | 4.3:-21423784 | MS.gene40106:CDS |
TCCTGCTTCACCGGAACTTA+AGG | 0.379403 | 4.3:-21422963 | MS.gene40106:intron |
AAACTAAGCTCCGTCGGGTT+CGG | 0.379564 | 4.3:-21423811 | MS.gene40106:CDS |
GCAGGGAAGACTCGTTTCAT+TGG | 0.381344 | 4.3:-21423199 | MS.gene40106:CDS |
TCCTTCAGTTTCTGGAGTGC+AGG | 0.386056 | 4.3:+21423223 | None:intergenic |
CAGTGCTTCTCCGTTGGCGA+TGG | 0.387532 | 4.3:-21423020 | MS.gene40106:CDS |
CACAAGTGTAGACGAGAGTT+TGG | 0.388926 | 4.3:-21423463 | MS.gene40106:CDS |
TTACGTGAACTTGGAAGAAC+TGG | 0.400346 | 4.3:-21423838 | MS.gene40106:CDS |
CAGGGAAGACTCGTTTCATT+GGG | 0.402120 | 4.3:-21423198 | MS.gene40106:CDS |
GCTACAATGTATTCACTTCT+CGG | 0.402496 | 4.3:+21423540 | None:intergenic |
CTCTGTCAATGATTCGACTT+TGG | 0.415789 | 4.3:-21423086 | MS.gene40106:CDS |
ATTGACAGAGTGATGGCAAT+AGG | 0.422905 | 4.3:+21423099 | None:intergenic |
CAGCAAGGGGTCAACTCTGC+TGG | 0.427552 | 4.3:+21420751 | None:intergenic |
ACCTTAAGTTCCGGTGAAGC+AGG | 0.436418 | 4.3:+21422962 | None:intergenic |
ATGGGTCTTCTCACTGAGGC+TGG | 0.452747 | 4.3:-21423001 | MS.gene40106:CDS |
GTTTGCTTGTTCTTCTGAAA+CGG | 0.454532 | 4.3:+21423759 | None:intergenic |
CTGAGGCTGGCCCTCCTGAA+TGG | 0.457972 | 4.3:-21422988 | MS.gene40106:CDS |
AACACCCTTGGACTTCAGAT+AGG | 0.459632 | 4.3:+21423051 | None:intergenic |
CTCCAGAAACTGAAGGAAGC+AGG | 0.467577 | 4.3:-21423217 | MS.gene40106:CDS |
AAAATGGAGTTACGTGAACT+TGG | 0.470953 | 4.3:-21423847 | MS.gene40106:CDS |
TGAATTTGGATCGTTAGATC+AGG | 0.479668 | 4.3:-21423394 | MS.gene40106:intron |
TAGGGTTCCGCCTGGAACAT+TGG | 0.482789 | 4.3:-21423134 | MS.gene40106:CDS |
ATTTACTTATGTTCTTGATA+GGG | 0.486238 | 4.3:-21423152 | MS.gene40106:CDS |
TGGCATGAGATCTGTCGAAC+AGG | 0.491310 | 4.3:-21421986 | MS.gene40106:intron |
TGTCAATGATTCGACTTTGG+AGG | 0.493678 | 4.3:-21423083 | MS.gene40106:CDS |
CATTATCAGTGCTTCTCCGT+TGG | 0.494180 | 4.3:-21423026 | MS.gene40106:CDS |
AGTATCACATCCAATGTTCC+AGG | 0.498225 | 4.3:+21423124 | None:intergenic |
TGAATGGCATCCTGCTTCAC+CGG | 0.501096 | 4.3:-21422972 | MS.gene40106:CDS |
GAAATCACATCAGTTCTTGT+TGG | 0.502174 | 4.3:-21422006 | MS.gene40106:CDS |
GATTACGGGACTTCCTTTGG+AGG | 0.507961 | 4.3:-21423176 | MS.gene40106:CDS |
GGGTTCGGAGCTTCTCCTCT+CGG | 0.519474 | 4.3:-21423796 | MS.gene40106:CDS |
AGTGCTTCTCCGTTGGCGAT+GGG | 0.519640 | 4.3:-21423019 | MS.gene40106:CDS |
TAAGACAAGACCTTAAGTTC+CGG | 0.528236 | 4.3:+21422953 | None:intergenic |
GACTTAAACTAAGCTCCGTC+GGG | 0.541712 | 4.3:-21423816 | MS.gene40106:CDS |
ACTGATAATGCCAACACCCT+TGG | 0.547863 | 4.3:+21423039 | None:intergenic |
GTTCTTGATAGGGTTCCGCC+TGG | 0.552103 | 4.3:-21423142 | MS.gene40106:CDS |
GGACTTAAACTAAGCTCCGT+CGG | 0.552405 | 4.3:-21423817 | MS.gene40106:CDS |
CAAACTCTCGTCTACACTTG+TGG | 0.552478 | 4.3:+21423464 | None:intergenic |
CAACTCTGCTGGATTCCGCT+AGG | 0.566406 | 4.3:+21420762 | None:intergenic |
TATCTGAAGTCCAAGGGTGT+TGG | 0.578204 | 4.3:-21423049 | MS.gene40106:CDS |
ACACCCTTGGACTTCAGATA+GGG | 0.582023 | 4.3:+21423052 | None:intergenic |
TACATTGTAGCAACTAAGTG+TGG | 0.594346 | 4.3:-21423528 | MS.gene40106:CDS |
TCCAGAAACTGAAGGAAGCA+GGG | 0.594834 | 4.3:-21423216 | MS.gene40106:CDS |
GTCTGAGAAAGTGCTCGGAA+AGG | 0.603040 | 4.3:-21423583 | MS.gene40106:CDS |
AGTGCCCTATCTGAAGTCCA+AGG | 0.603565 | 4.3:-21423056 | MS.gene40106:CDS |
GAAGCAGGATGCCATTCAGG+AGG | 0.605422 | 4.3:+21422977 | None:intergenic |
ACATAAGTAAATACCTCCAA+AGG | 0.605576 | 4.3:+21423163 | None:intergenic |
AGTGTCGAAGAAGTTGATGC+CGG | 0.606690 | 4.3:+21423711 | None:intergenic |
AGGAGAAGCTCCGAACCCGA+CGG | 0.607761 | 4.3:+21423801 | None:intergenic |
ACACTGTCTGAGAAAGTGCT+CGG | 0.611937 | 4.3:-21423588 | MS.gene40106:CDS |
GTGCCCTATCTGAAGTCCAA+GGG | 0.616458 | 4.3:-21423055 | MS.gene40106:CDS |
TTGTAGCAACTAAGTGTGGA+AGG | 0.618298 | 4.3:-21423524 | MS.gene40106:CDS |
TCGAATCATTGACAGAGTGA+TGG | 0.619506 | 4.3:+21423092 | None:intergenic |
GTGAGAAGACCCATCGCCAA+CGG | 0.621669 | 4.3:+21423010 | None:intergenic |
GAAATTTGAAGATATTATGG+AGG | 0.631142 | 4.3:-21423612 | MS.gene40106:intron |
TCCTGCACTCCAGAAACTGA+AGG | 0.632500 | 4.3:-21423224 | MS.gene40106:CDS |
GAAGCGGCTCTGTCAGAAGT+CGG | 0.634736 | 4.3:-21420819 | MS.gene40106:CDS |
AGAAGCTGCAAGTTCTCTTG+CGG | 0.638741 | 4.3:+21420851 | None:intergenic |
AAGTGTGGAAGGTACAAAGA+GGG | 0.661768 | 4.3:-21423513 | MS.gene40106:CDS |
TAAGTGTGGAAGGTACAAAG+AGG | 0.663345 | 4.3:-21423514 | MS.gene40106:CDS |
AAGCAGGATGCCATTCAGGA+GGG | 0.673956 | 4.3:+21422978 | None:intergenic |
GTGTAGACGAGAGTTTGGAA+AGG | 0.684238 | 4.3:-21423458 | MS.gene40106:CDS |
AGCTTCTGGAATCGACGAAG+CGG | 0.691488 | 4.3:-21420835 | MS.gene40106:CDS |
GGCGATGGGTCTTCTCACTG+AGG | 0.694882 | 4.3:-21423005 | MS.gene40106:CDS |
TTGAAAAGCGATACGAACAG+AGG | 0.699253 | 4.3:+21423735 | None:intergenic |
GAACCGAAGACGTTGCCGAG+AGG | 0.706655 | 4.3:+21423781 | None:intergenic |
ATCACATCCAATGTTCCAGG+CGG | 0.724421 | 4.3:+21423127 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAAAATATAAAGTTTTAATT+TGG | - | chr4.3:21422229-21422248 | MS.gene40106:intron | 10.0% |
!! | ACATATATTATCAATTATAG+TGG | + | chr4.3:21423565-21423584 | None:intergenic | 15.0% |
!!! | TAATTTGCTACTAAATTTAT+CGG | - | chr4.3:21421931-21421950 | MS.gene40106:intron | 15.0% |
!!! | TATATTTTCTCAATTTAGAA+CGG | + | chr4.3:21423714-21423733 | None:intergenic | 15.0% |
!!! | TCTTGTCTTATTATTAATTA+CGG | - | chr4.3:21421665-21421684 | MS.gene40106:intron | 15.0% |
!!! | TTGATAATATATGTCAATAT+TGG | - | chr4.3:21423571-21423590 | MS.gene40106:CDS | 15.0% |
!! | ATTCGTTCAATATATCATAT+GGG | + | chr4.3:21422317-21422336 | None:intergenic | 20.0% |
!! | ATTTACTTATGTTCTTGATA+GGG | - | chr4.3:21421453-21421472 | MS.gene40106:intron | 20.0% |
!! | CAATACATGTTACTAAATTA+TGG | + | chr4.3:21423201-21423220 | None:intergenic | 20.0% |
!! | TATTTACTTATGTTCTTGAT+AGG | - | chr4.3:21421452-21421471 | MS.gene40106:intron | 20.0% |
!! | TTTGTATATGTAAATCAGAA+AGG | - | chr4.3:21422071-21422090 | MS.gene40106:CDS | 20.0% |
!!! | AATTTGCTACTAAATTTATC+GGG | - | chr4.3:21421932-21421951 | MS.gene40106:intron | 20.0% |
!!! | ATTAAGTTTTTTATCCAAAG+AGG | - | chr4.3:21421272-21421291 | MS.gene40106:intron | 20.0% |
!!! | GTTCTAAATTGAGAAAATAT+AGG | - | chr4.3:21423713-21423732 | MS.gene40106:CDS | 20.0% |
!!! | TGCTATTTTTCTTATACAAA+AGG | - | chr4.3:21421958-21421977 | MS.gene40106:intron | 20.0% |
! | AAATATGTACTTGTTTAGCT+TGG | - | chr4.3:21422922-21422941 | MS.gene40106:intron | 25.0% |
! | AAATGTCAATCTCTTAACAA+AGG | + | chr4.3:21423238-21423257 | None:intergenic | 25.0% |
! | AACAAGTACATAATTTACAG+AGG | + | chr4.3:21422828-21422847 | None:intergenic | 25.0% |
! | AATGCAATATTTAAGCAAGT+GGG | - | chr4.3:21423093-21423112 | MS.gene40106:CDS | 25.0% |
! | AATTATGTACTTGTTTAGCT+TGG | - | chr4.3:21422833-21422852 | MS.gene40106:intron | 25.0% |
! | AATTTCAGTTGTAACTTAAC+TGG | - | chr4.3:21421299-21421318 | MS.gene40106:intron | 25.0% |
! | CATATTTCATCAAAACTAAC+TGG | - | chr4.3:21422461-21422480 | MS.gene40106:intron | 25.0% |
! | CATTCGTTCAATATATCATA+TGG | + | chr4.3:21422318-21422337 | None:intergenic | 25.0% |
! | CTAAATTGAGAAAATATAGG+TGG | - | chr4.3:21423716-21423735 | MS.gene40106:CDS | 25.0% |
! | CTCGAAATTTGAAGATATTA+TGG | - | chr4.3:21420990-21421009 | MS.gene40106:intron | 25.0% |
! | GAAATTTGAAGATATTATGG+AGG | - | chr4.3:21420993-21421012 | MS.gene40106:intron | 25.0% |
! | GCAACTTATTGCAAAAAAAA+TGG | - | chr4.3:21422530-21422549 | MS.gene40106:intron | 25.0% |
! | TACACTATAATAAGCAAACA+TGG | - | chr4.3:21423388-21423407 | MS.gene40106:intron | 25.0% |
! | TGATCATAACATGCAAATTA+AGG | + | chr4.3:21421774-21421793 | None:intergenic | 25.0% |
! | TTCGTTCAATATATCATATG+GGG | + | chr4.3:21422316-21422335 | None:intergenic | 25.0% |
!! | AACAAGTACATATTTTACAG+AGG | + | chr4.3:21422917-21422936 | None:intergenic | 25.0% |
!! | GTTTATGTTGTTGTTGTAAA+AGG | - | chr4.3:21422008-21422027 | MS.gene40106:CDS | 25.0% |
!! | TTTTTGTGCAAAAGATGATT+TGG | + | chr4.3:21421900-21421919 | None:intergenic | 25.0% |
AACTCCACAAATTATGTGAT+AGG | + | chr4.3:21423145-21423164 | None:intergenic | 30.0% | |
AACTGAAATTAGATCCTCTT+TGG | + | chr4.3:21421289-21421308 | None:intergenic | 30.0% | |
AACTGGTAACTGTATTTCAA+GGG | - | chr4.3:21421316-21421335 | MS.gene40106:intron | 30.0% | |
AATGAAAACAACAAAGAGAG+AGG | + | chr4.3:21422785-21422804 | None:intergenic | 30.0% | |
AATTGAGAAAATATAGGTGG+AGG | - | chr4.3:21423719-21423738 | MS.gene40106:CDS | 30.0% | |
ACATAAGTAAATACCTCCAA+AGG | + | chr4.3:21421445-21421464 | None:intergenic | 30.0% | |
AGAACCTATCACATAATTTG+TGG | - | chr4.3:21423138-21423157 | MS.gene40106:CDS | 30.0% | |
AGAACTAAGTTCTTATACAC+CGG | + | chr4.3:21422043-21422062 | None:intergenic | 30.0% | |
AGAACTACTTGCAAATCATT+TGG | + | chr4.3:21423343-21423362 | None:intergenic | 30.0% | |
ATACAAAAGGATAACGTTAG+TGG | - | chr4.3:21421971-21421990 | MS.gene40106:intron | 30.0% | |
ATCACTGCATTCAATATTCT+TGG | - | chr4.3:21422338-21422357 | MS.gene40106:intron | 30.0% | |
ATGTCAATATTGGAGTTCTT+GGG | - | chr4.3:21423581-21423600 | MS.gene40106:CDS | 30.0% | |
CAATGCAATATTTAAGCAAG+TGG | - | chr4.3:21423092-21423111 | MS.gene40106:CDS | 30.0% | |
CACTTGCTTAAATATTGCAT+TGG | + | chr4.3:21423094-21423113 | None:intergenic | 30.0% | |
CAGTGTCATGATATTGAATT+TGG | - | chr4.3:21421197-21421216 | MS.gene40106:intron | 30.0% | |
GAAATACAGAAAATTGAGCA+TGG | - | chr4.3:21422111-21422130 | MS.gene40106:intron | 30.0% | |
GAACTACTTGCAAATCATTT+GGG | + | chr4.3:21423342-21423361 | None:intergenic | 30.0% | |
TAACTGGTAACTGTATTTCA+AGG | - | chr4.3:21421315-21421334 | MS.gene40106:intron | 30.0% | |
TACAAAAGGATAACGTTAGT+GGG | - | chr4.3:21421972-21421991 | MS.gene40106:intron | 30.0% | |
TATGTCAATATTGGAGTTCT+TGG | - | chr4.3:21423580-21423599 | MS.gene40106:CDS | 30.0% | |
TCGTTCAATATATCATATGG+GGG | + | chr4.3:21422315-21422334 | None:intergenic | 30.0% | |
TGAAATGAAAAAAGAGAGAG+AGG | + | chr4.3:21420936-21420955 | None:intergenic | 30.0% | |
TTGTAAAAGGATAACGTTTC+CGG | - | chr4.3:21422021-21422040 | MS.gene40106:CDS | 30.0% | |
! | AAAACTAGCTTACAACACTA+AGG | + | chr4.3:21421799-21421818 | None:intergenic | 30.0% |
! | AATCACAGATTTTCAGAACA+TGG | + | chr4.3:21422692-21422711 | None:intergenic | 30.0% |
! | CTCAATTTTCTGTATTTCTC+TGG | + | chr4.3:21422109-21422128 | None:intergenic | 30.0% |
!! | TGTTCTGAAAATCTGTGATT+TGG | - | chr4.3:21422692-21422711 | MS.gene40106:intron | 30.0% |
!!! | ATTTTTGACAGGCTTTAGAA+TGG | + | chr4.3:21423814-21423833 | None:intergenic | 30.0% |
!!! | CTGGTTCTATGTATTTTGTT+TGG | - | chr4.3:21422480-21422499 | MS.gene40106:intron | 30.0% |
AAACATCATTCAGTACTAGG+AGG | + | chr4.3:21422379-21422398 | None:intergenic | 35.0% | |
ACTGGTAACTGTATTTCAAG+GGG | - | chr4.3:21421317-21421336 | MS.gene40106:intron | 35.0% | |
AGATTGACATTTGCATGCAT+TGG | - | chr4.3:21423246-21423265 | MS.gene40106:intron | 35.0% | |
CACAAACATCATTCAGTACT+AGG | + | chr4.3:21422382-21422401 | None:intergenic | 35.0% | |
CTACCAAGTGAACTCAAATT+AGG | + | chr4.3:21421734-21421753 | None:intergenic | 35.0% | |
CTTAACAAAGGACCTTCAAA+CGG | + | chr4.3:21423226-21423245 | None:intergenic | 35.0% | |
GAAATCACATCAGTTCTTGT+TGG | - | chr4.3:21422599-21422618 | MS.gene40106:intron | 35.0% | |
GCTACAATGTATTCACTTCT+CGG | + | chr4.3:21421068-21421087 | None:intergenic | 35.0% | |
GTTCATCTTTATCAAGTGAC+TGG | + | chr4.3:21423692-21423711 | None:intergenic | 35.0% | |
TAAGACAAGACCTTAAGTTC+CGG | + | chr4.3:21421655-21421674 | None:intergenic | 35.0% | |
TACATTGTAGCAACTAAGTG+TGG | - | chr4.3:21421077-21421096 | MS.gene40106:intron | 35.0% | |
TGAATTTGGATCGTTAGATC+AGG | - | chr4.3:21421211-21421230 | MS.gene40106:intron | 35.0% | |
! | ACATGTATTGATCCGTTTGA+AGG | - | chr4.3:21423211-21423230 | MS.gene40106:CDS | 35.0% |
! | ACCAACAGGAGTATGAAAAA+TGG | - | chr4.3:21423442-21423461 | MS.gene40106:CDS | 35.0% |
! | AGACCTAATTTGAGTTCACT+TGG | - | chr4.3:21421728-21421747 | MS.gene40106:intron | 35.0% |
! | CTAGTACTGAATGATGTTTG+TGG | - | chr4.3:21422380-21422399 | MS.gene40106:intron | 35.0% |
! | GAATCACTGTTTTCTGCTTA+TGG | - | chr4.3:21422426-21422445 | MS.gene40106:intron | 35.0% |
! | GTTTGCTTGTTCTTCTGAAA+CGG | + | chr4.3:21420849-21420868 | None:intergenic | 35.0% |
! | TTTTGTGCCGTAAAACAAGT+GGG | - | chr4.3:21423163-21423182 | MS.gene40106:CDS | 35.0% |
!! | GCAGTACAGCTTGTTAAATA+AGG | - | chr4.3:21422577-21422596 | MS.gene40106:intron | 35.0% |
!! | TCCATTTTTCATACTCCTGT+TGG | + | chr4.3:21423446-21423465 | None:intergenic | 35.0% |
!!! | ATGATAGCCCACTTGTTTTA+CGG | + | chr4.3:21423173-21423192 | None:intergenic | 35.0% |
AAAAATCAGTCATGGCCTAG+CGG | - | chr4.3:21423828-21423847 | MS.gene40106:CDS | 40.0% | |
AAGGATAACGTTAGTGGGAT+AGG | - | chr4.3:21421977-21421996 | MS.gene40106:intron | 40.0% | |
ACTCGTTTCATTGGGATTAC+GGG | - | chr4.3:21421415-21421434 | MS.gene40106:intron | 40.0% | |
AGAGAGAGGTAACAATCTGA+TGG | + | chr4.3:21422771-21422790 | None:intergenic | 40.0% | |
AGCCTGTCAAAAATCAGTCA+TGG | - | chr4.3:21423820-21423839 | MS.gene40106:CDS | 40.0% | |
AGGATAACGTTAGTGGGATA+GGG | - | chr4.3:21421978-21421997 | MS.gene40106:intron | 40.0% | |
AGTATCACATCCAATGTTCC+AGG | + | chr4.3:21421484-21421503 | None:intergenic | 40.0% | |
ATGTGATAGGTTCTTCGTCT+AGG | + | chr4.3:21423132-21423151 | None:intergenic | 40.0% | |
ATTGACAGAGTGATGGCAAT+AGG | + | chr4.3:21421509-21421528 | None:intergenic | 40.0% | |
CTCTGTCAATGATTCGACTT+TGG | - | chr4.3:21421519-21421538 | MS.gene40106:intron | 40.0% | |
CTTTGGTATCACTGTATAGC+TGG | - | chr4.3:21422744-21422763 | MS.gene40106:intron | 40.0% | |
GACTCGTTTCATTGGGATTA+CGG | - | chr4.3:21421414-21421433 | MS.gene40106:intron | 40.0% | |
TATGGGGGAAATCAGTAGTT+TGG | + | chr4.3:21422300-21422319 | None:intergenic | 40.0% | |
TCGAATCATTGACAGAGTGA+TGG | + | chr4.3:21421516-21421535 | None:intergenic | 40.0% | |
TGTCAATGATTCGACTTTGG+AGG | - | chr4.3:21421522-21421541 | MS.gene40106:intron | 40.0% | |
TTACGTGAACTTGGAAGAAC+TGG | - | chr4.3:21420767-21420786 | MS.gene40106:CDS | 40.0% | |
TTGAAAAGCGATACGAACAG+AGG | + | chr4.3:21420873-21420892 | None:intergenic | 40.0% | |
TTGTAGCAACTAAGTGTGGA+AGG | - | chr4.3:21421081-21421100 | MS.gene40106:intron | 40.0% | |
! | AAGTGTGGAAGGTACAAAGA+GGG | - | chr4.3:21421092-21421111 | MS.gene40106:intron | 40.0% |
! | ACTGTTTTCTGCTTATGGTC+TGG | - | chr4.3:21422431-21422450 | MS.gene40106:intron | 40.0% |
! | GTTTTGTGCCGTAAAACAAG+TGG | - | chr4.3:21423162-21423181 | MS.gene40106:CDS | 40.0% |
! | TAAGTGTGGAAGGTACAAAG+AGG | - | chr4.3:21421091-21421110 | MS.gene40106:intron | 40.0% |
!! | GATACCAAAGCTTTAGAGCA+AGG | + | chr4.3:21422734-21422753 | None:intergenic | 40.0% |
!! | GTTCGTATCGCTTTTCAATC+CGG | - | chr4.3:21420875-21420894 | MS.gene40106:intron | 40.0% |
!! | TAAGCCTTGCTCTAAAGCTT+TGG | - | chr4.3:21422727-21422746 | MS.gene40106:intron | 40.0% |
!! | TGCAAAAGATGATTTGGTGC+AGG | + | chr4.3:21421894-21421913 | None:intergenic | 40.0% |
AACACCCTTGGACTTCAGAT+AGG | + | chr4.3:21421557-21421576 | None:intergenic | 45.0% | |
ACACCCTTGGACTTCAGATA+GGG | + | chr4.3:21421556-21421575 | None:intergenic | 45.0% | |
AGAAGCTGCAAGTTCTCTTG+CGG | + | chr4.3:21423757-21423776 | None:intergenic | 45.0% | |
ATCACATCCAATGTTCCAGG+CGG | + | chr4.3:21421481-21421500 | None:intergenic | 45.0% | |
CAAACTCTCGTCTACACTTG+TGG | + | chr4.3:21421144-21421163 | None:intergenic | 45.0% | |
CACAAGTGTAGACGAGAGTT+TGG | - | chr4.3:21421142-21421161 | MS.gene40106:intron | 45.0% | |
CAGGGAAGACTCGTTTCATT+GGG | - | chr4.3:21421407-21421426 | MS.gene40106:intron | 45.0% | |
CATTATCAGTGCTTCTCCGT+TGG | - | chr4.3:21421579-21421598 | MS.gene40106:intron | 45.0% | |
GACTTAAACTAAGCTCCGTC+GGG | - | chr4.3:21420789-21420808 | MS.gene40106:CDS | 45.0% | |
GAGAGAGAGGAAATAGCGTA+CGG | + | chr4.3:21420923-21420942 | None:intergenic | 45.0% | |
GGACTTAAACTAAGCTCCGT+CGG | - | chr4.3:21420788-21420807 | MS.gene40106:CDS | 45.0% | |
GTGTAGACGAGAGTTTGGAA+AGG | - | chr4.3:21421147-21421166 | MS.gene40106:intron | 45.0% | |
TCCAGAAACTGAAGGAAGCA+GGG | - | chr4.3:21421389-21421408 | MS.gene40106:intron | 45.0% | |
TCCTCATACTCTCTACCAAC+AGG | - | chr4.3:21423428-21423447 | MS.gene40106:CDS | 45.0% | |
! | ACTGATAATGCCAACACCCT+TGG | + | chr4.3:21421569-21421588 | None:intergenic | 45.0% |
! | GTTGGTAGAGAGTATGAGGA+AGG | + | chr4.3:21423428-21423447 | None:intergenic | 45.0% |
! | TATCTGAAGTCCAAGGGTGT+TGG | - | chr4.3:21421556-21421575 | MS.gene40106:intron | 45.0% |
! | TCCTGTTGGTAGAGAGTATG+AGG | + | chr4.3:21423432-21423451 | None:intergenic | 45.0% |
!! | ACACTGTCTGAGAAAGTGCT+CGG | - | chr4.3:21421017-21421036 | MS.gene40106:intron | 45.0% |
!! | AGTGTCGAAGAAGTTGATGC+CGG | + | chr4.3:21420897-21420916 | None:intergenic | 45.0% |
!! | GGCCATGACTGATTTTTGAC+AGG | + | chr4.3:21423825-21423844 | None:intergenic | 45.0% |
!! | TAAGCAAGTGGGCTATCATC+AGG | - | chr4.3:21423104-21423123 | MS.gene40106:CDS | 45.0% |
AAACTAAGCTCCGTCGGGTT+CGG | - | chr4.3:21420794-21420813 | MS.gene40106:CDS | 50.0% | |
AAGCAGGATGCCATTCAGGA+GGG | + | chr4.3:21421630-21421649 | None:intergenic | 50.0% | |
ACCTTAAGTTCCGGTGAAGC+AGG | + | chr4.3:21421646-21421665 | None:intergenic | 50.0% | |
CTCCAGAAACTGAAGGAAGC+AGG | - | chr4.3:21421388-21421407 | MS.gene40106:intron | 50.0% | |
GATTACGGGACTTCCTTTGG+AGG | - | chr4.3:21421429-21421448 | MS.gene40106:intron | 50.0% | |
GCAAGAGAACTTGCAGCTTC+TGG | - | chr4.3:21423756-21423775 | MS.gene40106:CDS | 50.0% | |
GCAGGGAAGACTCGTTTCAT+TGG | - | chr4.3:21421406-21421425 | MS.gene40106:intron | 50.0% | |
TCCCTGCTTCCTTCAGTTTC+TGG | + | chr4.3:21421393-21421412 | None:intergenic | 50.0% | |
TCCTGCACTCCAGAAACTGA+AGG | - | chr4.3:21421381-21421400 | MS.gene40106:intron | 50.0% | |
TCCTGCTTCACCGGAACTTA+AGG | - | chr4.3:21421642-21421661 | MS.gene40106:intron | 50.0% | |
TGAATGGCATCCTGCTTCAC+CGG | - | chr4.3:21421633-21421652 | MS.gene40106:intron | 50.0% | |
TGGCATGAGATCTGTCGAAC+AGG | - | chr4.3:21422619-21422638 | MS.gene40106:intron | 50.0% | |
TGGGATTACGGGACTTCCTT+TGG | - | chr4.3:21421426-21421445 | MS.gene40106:intron | 50.0% | |
TTGGAGTTCTTGGGTGCACT+AGG | - | chr4.3:21423590-21423609 | MS.gene40106:CDS | 50.0% | |
! | AGTGCCCTATCTGAAGTCCA+AGG | - | chr4.3:21421549-21421568 | MS.gene40106:intron | 50.0% |
! | GTGCCCTATCTGAAGTCCAA+GGG | - | chr4.3:21421550-21421569 | MS.gene40106:intron | 50.0% |
!! | AGCTTCTGGAATCGACGAAG+CGG | - | chr4.3:21423770-21423789 | MS.gene40106:CDS | 50.0% |
!! | GTCTGAGAAAGTGCTCGGAA+AGG | - | chr4.3:21421022-21421041 | MS.gene40106:intron | 50.0% |
!! | TCCTTCAGTTTCTGGAGTGC+AGG | + | chr4.3:21421385-21421404 | None:intergenic | 50.0% |
AGTGCTTCTCCGTTGGCGAT+GGG | - | chr4.3:21421586-21421605 | MS.gene40106:intron | 55.0% | |
ATGGGTCTTCTCACTGAGGC+TGG | - | chr4.3:21421604-21421623 | MS.gene40106:intron | 55.0% | |
CAACTCTGCTGGATTCCGCT+AGG | + | chr4.3:21423846-21423865 | None:intergenic | 55.0% | |
GAAGCAGGATGCCATTCAGG+AGG | + | chr4.3:21421631-21421650 | None:intergenic | 55.0% | |
GAAGCGGCTCTGTCAGAAGT+CGG | - | chr4.3:21423786-21423805 | MS.gene40106:CDS | 55.0% | |
GGTGAAGCAGGATGCCATTC+AGG | + | chr4.3:21421634-21421653 | None:intergenic | 55.0% | |
GTGAGAAGACCCATCGCCAA+CGG | + | chr4.3:21421598-21421617 | None:intergenic | 55.0% | |
GTTCTTGATAGGGTTCCGCC+TGG | - | chr4.3:21421463-21421482 | MS.gene40106:intron | 55.0% | |
TAGGGTTCCGCCTGGAACAT+TGG | - | chr4.3:21421471-21421490 | MS.gene40106:intron | 55.0% | |
TCTCCTCTCGGCAACGTCTT+CGG | - | chr4.3:21420821-21420840 | MS.gene40106:CDS | 55.0% | |
AGGAGAAGCTCCGAACCCGA+CGG | + | chr4.3:21420807-21420826 | None:intergenic | 60.0% | |
CAGTGCTTCTCCGTTGGCGA+TGG | - | chr4.3:21421585-21421604 | MS.gene40106:intron | 60.0% | |
GAACCGAAGACGTTGCCGAG+AGG | + | chr4.3:21420827-21420846 | None:intergenic | 60.0% | |
GGCGATGGGTCTTCTCACTG+AGG | - | chr4.3:21421600-21421619 | MS.gene40106:intron | 60.0% | |
GGGTTCGGAGCTTCTCCTCT+CGG | - | chr4.3:21420809-21420828 | MS.gene40106:CDS | 60.0% | |
! | CTGAGGCTGGCCCTCCTGAA+TGG | - | chr4.3:21421617-21421636 | MS.gene40106:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 21420761 | 21423866 | 21420761 | ID=MS.gene40106 |
chr4.3 | mRNA | 21420761 | 21423866 | 21420761 | ID=MS.gene40106.t1;Parent=MS.gene40106 |
chr4.3 | exon | 21423706 | 21423866 | 21423706 | ID=MS.gene40106.t1.exon1;Parent=MS.gene40106.t1 |
chr4.3 | CDS | 21423706 | 21423866 | 21423706 | ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1 |
chr4.3 | exon | 21423395 | 21423623 | 21423395 | ID=MS.gene40106.t1.exon2;Parent=MS.gene40106.t1 |
chr4.3 | CDS | 21423395 | 21423623 | 21423395 | ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1 |
chr4.3 | exon | 21422964 | 21423263 | 21422964 | ID=MS.gene40106.t1.exon3;Parent=MS.gene40106.t1 |
chr4.3 | CDS | 21422964 | 21423263 | 21422964 | ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1 |
chr4.3 | exon | 21421987 | 21422115 | 21421987 | ID=MS.gene40106.t1.exon4;Parent=MS.gene40106.t1 |
chr4.3 | CDS | 21421987 | 21422115 | 21421987 | ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1 |
chr4.3 | exon | 21420761 | 21420892 | 21420761 | ID=MS.gene40106.t1.exon5;Parent=MS.gene40106.t1 |
chr4.3 | CDS | 21420761 | 21420892 | 21420761 | ID=cds.MS.gene40106.t1;Parent=MS.gene40106.t1 |
Gene Sequence |
Protein sequence |