Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09264.t1 | XP_003629619.2 | 98 | 917 | 17 | 1 | 1 | 917 | 1 | 916 | 0.00E+00 | 1766.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09264.t1 | O81852 | 79.7 | 866 | 169 | 3 | 56 | 917 | 54 | 916 | 0.0e+00 | 1386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09264.t1 | G7LH36 | 98.0 | 917 | 17 | 1 | 1 | 917 | 1 | 916 | 0.0e+00 | 1766.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene09264 | 0.814584 | 1.43E-51 | -1.69E-46 |
| MS.gene050324 | MS.gene09264 | 0.800262 | 1.56E-48 | -1.69E-46 |
| MS.gene051663 | MS.gene09264 | 0.807041 | 6.13E-50 | -1.69E-46 |
| MS.gene052254 | MS.gene09264 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene09264 | 0.827327 | 1.66E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene09264 | 0.813753 | 2.18E-51 | -1.69E-46 |
| MS.gene052789 | MS.gene09264 | 0.811024 | 8.61E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene09264 | 0.821868 | 3.21E-53 | -1.69E-46 |
| MS.gene057054 | MS.gene09264 | 0.825225 | 5.26E-54 | -1.69E-46 |
| MS.gene058833 | MS.gene09264 | 0.820498 | 6.64E-53 | -1.69E-46 |
| MS.gene058982 | MS.gene09264 | 0.826864 | 2.15E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09264.t1 | MTR_8g083210 | 98.037 | 917 | 17 | 1 | 1 | 917 | 1 | 916 | 0.0 | 1859 |
| MS.gene09264.t1 | MTR_8g083210 | 97.274 | 917 | 17 | 2 | 1 | 917 | 1 | 909 | 0.0 | 1838 |
| MS.gene09264.t1 | MTR_3g084500 | 82.766 | 882 | 148 | 1 | 36 | 917 | 29 | 906 | 0.0 | 1521 |
| MS.gene09264.t1 | MTR_3g084500 | 86.445 | 723 | 98 | 0 | 195 | 917 | 14 | 736 | 0.0 | 1307 |
| MS.gene09264.t1 | MTR_3g084500 | 87.026 | 686 | 89 | 0 | 232 | 917 | 1 | 686 | 0.0 | 1248 |
| MS.gene09264.t1 | MTR_3g079330 | 35.544 | 377 | 206 | 11 | 558 | 907 | 3 | 369 | 4.88e-53 | 190 |
| MS.gene09264.t1 | MTR_7g083920 | 25.047 | 531 | 375 | 11 | 33 | 555 | 21 | 536 | 1.81e-48 | 181 |
| MS.gene09264.t1 | MTR_6g033260 | 26.483 | 472 | 321 | 10 | 90 | 553 | 83 | 536 | 2.65e-45 | 172 |
| MS.gene09264.t1 | MTR_6g033260 | 26.708 | 483 | 308 | 11 | 90 | 553 | 83 | 538 | 1.42e-44 | 170 |
| MS.gene09264.t1 | MTR_6g033260 | 26.339 | 448 | 304 | 10 | 90 | 529 | 83 | 512 | 7.63e-40 | 155 |
| MS.gene09264.t1 | MTR_7g083920 | 25.765 | 392 | 274 | 9 | 169 | 555 | 50 | 429 | 2.79e-39 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09264.t1 | AT4G19710 | 78.596 | 883 | 182 | 3 | 39 | 917 | 37 | 916 | 0.0 | 1439 |
| MS.gene09264.t1 | AT1G31230 | 77.958 | 862 | 188 | 1 | 56 | 917 | 52 | 911 | 0.0 | 1401 |
| MS.gene09264.t1 | AT4G19710 | 78.753 | 786 | 160 | 3 | 56 | 837 | 54 | 836 | 0.0 | 1291 |
| MS.gene09264.t1 | AT5G21060 | 35.657 | 373 | 207 | 10 | 563 | 909 | 8 | 373 | 5.58e-55 | 196 |
| MS.gene09264.t1 | AT5G21060 | 35.657 | 373 | 207 | 10 | 563 | 909 | 8 | 373 | 6.79e-55 | 195 |
| MS.gene09264.t1 | AT5G21060 | 34.933 | 375 | 205 | 11 | 563 | 909 | 8 | 371 | 6.97e-55 | 195 |
| MS.gene09264.t1 | AT5G14060 | 27.766 | 479 | 308 | 13 | 90 | 553 | 85 | 540 | 1.14e-47 | 179 |
| MS.gene09264.t1 | AT5G14060 | 27.766 | 479 | 308 | 13 | 90 | 553 | 85 | 540 | 1.14e-47 | 179 |
| MS.gene09264.t1 | AT3G02020 | 27.668 | 506 | 327 | 14 | 79 | 572 | 80 | 558 | 5.90e-47 | 177 |
| MS.gene09264.t1 | AT5G13280 | 25.617 | 527 | 357 | 14 | 44 | 555 | 38 | 544 | 3.93e-45 | 172 |
| MS.gene09264.t1 | AT5G14060 | 28.457 | 376 | 240 | 9 | 90 | 455 | 85 | 441 | 1.55e-38 | 150 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGAATTTGCCTTCTTATT+TGG | 0.069267 | 4.1:-14596278 | None:intergenic |
| GAAAATATTCCTTATCAAAA+TGG | 0.145381 | 4.1:-14588502 | None:intergenic |
| CCGAATTTGCCTTCTTATTT+GGG | 0.162811 | 4.1:-14596277 | None:intergenic |
| TCTTGGTCTGTTCACAAATT+TGG | 0.173756 | 4.1:+14586535 | MS.gene09264:CDS |
| TCAAGTTGATCCCGACTATT+TGG | 0.182843 | 4.1:+14587899 | MS.gene09264:CDS |
| TATCCCAAATTGTAGCATTT+TGG | 0.191249 | 4.1:+14591105 | MS.gene09264:CDS |
| ATTATTGGACCAGGGTTAAT+TGG | 0.198805 | 4.1:+14591452 | MS.gene09264:CDS |
| GCAAACTCCGGGTCAAATTT+TGG | 0.204913 | 4.1:-14598039 | None:intergenic |
| CCCAAATAAGAAGGCAAATT+CGG | 0.231744 | 4.1:+14596277 | MS.gene09264:CDS |
| TGATTTCTCAGCAGCAATTA+TGG | 0.234619 | 4.1:+14588040 | MS.gene09264:CDS |
| GGGATATGCGCTTCACTTAC+AGG | 0.236235 | 4.1:+14586366 | MS.gene09264:CDS |
| ATCTTCCTTGGATGCTGTTT+TGG | 0.244571 | 4.1:+14586720 | MS.gene09264:CDS |
| AAGAGGAGAAGCGGCTAATT+TGG | 0.249739 | 4.1:+14596127 | MS.gene09264:CDS |
| ACCATAGCAATGGGAATTAT+TGG | 0.255782 | 4.1:+14591437 | MS.gene09264:CDS |
| GCAGCCAAAATGCTACAATT+TGG | 0.265473 | 4.1:-14591109 | None:intergenic |
| TGCAAATTGAAGGCATATTC+AGG | 0.275578 | 4.1:+14596886 | MS.gene09264:CDS |
| TTTCGTCAAGCTTTGGATAA+TGG | 0.279878 | 4.1:+14589100 | MS.gene09264:CDS |
| TTGCGTGTAATGGGCATAAT+TGG | 0.289405 | 4.1:+14595206 | MS.gene09264:CDS |
| TTGTAGGACATGGGGAATTA+TGG | 0.292050 | 4.1:+14587688 | MS.gene09264:CDS |
| CATGTTGTACAGTCTTATTT+TGG | 0.293994 | 4.1:+14588426 | MS.gene09264:intron |
| ACTGGAATGGCTGGTGTTCC+AGG | 0.296123 | 4.1:+14588813 | MS.gene09264:CDS |
| AGATGTTGTCTCTAGTTATT+AGG | 0.297251 | 4.1:+14587718 | MS.gene09264:CDS |
| GAGCTCGTCAGGTCACAATT+TGG | 0.297523 | 4.1:+14588075 | MS.gene09264:CDS |
| GTTCTTACCCGTAGTGGTTC+TGG | 0.302693 | 4.1:-14597894 | None:intergenic |
| TTCGTCAAGCTTTGGATAAT+GGG | 0.308314 | 4.1:+14589101 | MS.gene09264:CDS |
| GGCTGCTGTTGGCCAGAAAA+TGG | 0.310860 | 4.1:+14591126 | MS.gene09264:CDS |
| CAAATTTGGTGGAACTTGTA+TGG | 0.317266 | 4.1:+14586549 | MS.gene09264:CDS |
| AACATTGATTTGCGTGTAAT+GGG | 0.323429 | 4.1:+14595197 | MS.gene09264:CDS |
| TTACGACTTGCCTCATATCT+AGG | 0.323640 | 4.1:+14598891 | MS.gene09264:CDS |
| TTGCGTGGCCTCCTTGAAAC+TGG | 0.331214 | 4.1:+14596852 | MS.gene09264:CDS |
| TTCTCTCTATCCAGTATTTG+AGG | 0.338111 | 4.1:+14596748 | MS.gene09264:intron |
| CATCCATTTGCACAATTGTC+GGG | 0.343333 | 4.1:+14598756 | MS.gene09264:CDS |
| ATCAAGGTTTCGTCAAGCTT+TGG | 0.350380 | 4.1:+14589093 | MS.gene09264:CDS |
| TAACATTGATTTGCGTGTAA+TGG | 0.351437 | 4.1:+14595196 | MS.gene09264:CDS |
| TGATGATTCCGAGAGGAAAT+TGG | 0.352311 | 4.1:+14586615 | MS.gene09264:CDS |
| TTTATTTACTGCAGATGTTT+CGG | 0.364466 | 4.1:+14586471 | MS.gene09264:intron |
| GGTTGTTTCTGCAATGTCTA+AGG | 0.365895 | 4.1:+14586639 | MS.gene09264:CDS |
| ATAATTCTCGCAAGGGAATC+TGG | 0.369464 | 4.1:+14597828 | MS.gene09264:CDS |
| GAGAGTGGAAACGGCGGGAG+AGG | 0.373781 | 4.1:-14586026 | None:intergenic |
| GGATAATGGGCGTCTTTCTC+AGG | 0.374064 | 4.1:+14589114 | MS.gene09264:CDS |
| GATTTCTCAGCAGCAATTAT+GGG | 0.379368 | 4.1:+14588041 | MS.gene09264:CDS |
| CCAAATAAGAAGGCAAATTC+GGG | 0.385017 | 4.1:+14596278 | MS.gene09264:CDS |
| CAACCTTAAGGCCATGCTTC+GGG | 0.385314 | 4.1:+14586825 | MS.gene09264:CDS |
| AGGATAGTATAAAAGCTTTA+CGG | 0.387954 | 4.1:+14591381 | MS.gene09264:CDS |
| ATAATTCCTGTGATGAGATA+TGG | 0.389266 | 4.1:+14588474 | MS.gene09264:CDS |
| TGCAAGGTAATTATTGCTAC+TGG | 0.393938 | 4.1:+14587963 | MS.gene09264:CDS |
| CGAAGAGAGTCACCGAGCTC+TGG | 0.396604 | 4.1:+14586345 | MS.gene09264:CDS |
| AAAATATTCCTTATCAAAAT+GGG | 0.405457 | 4.1:-14588501 | None:intergenic |
| GGATAGTATAAAAGCTTTAC+GGG | 0.405815 | 4.1:+14591382 | MS.gene09264:CDS |
| TTGCTGGCCATTACTATGAT+TGG | 0.406119 | 4.1:+14596228 | MS.gene09264:CDS |
| TTCTCTATTTAGAGCTCGTC+AGG | 0.407974 | 4.1:+14588064 | MS.gene09264:CDS |
| CAGCCAAAATGCTACAATTT+GGG | 0.410503 | 4.1:-14591108 | None:intergenic |
| GTGATTGAGCCTTATTGATA+AGG | 0.412222 | 4.1:-14586681 | None:intergenic |
| ATAGTTCGCGGGCCAGGAGC+TGG | 0.412636 | 4.1:+14598831 | MS.gene09264:CDS |
| ACGGCTGATTCTGTCATTGC+TGG | 0.413603 | 4.1:+14596212 | MS.gene09264:CDS |
| CCTTAGCCAATGCGTTGAAA+AGG | 0.415646 | 4.1:-14591174 | None:intergenic |
| TTGCCGAGGCATTGCAATCA+AGG | 0.416755 | 4.1:+14589077 | MS.gene09264:CDS |
| AGCAAGGTGGAAAGAACTTC+GGG | 0.419364 | 4.1:+14596100 | MS.gene09264:CDS |
| TTATTGGACCAGGGTTAATT+GGG | 0.421244 | 4.1:+14591453 | MS.gene09264:CDS |
| TCTTGTTTCTTTGCAAACTC+CGG | 0.422683 | 4.1:-14598051 | None:intergenic |
| GATGTATGACCTTATCAATA+AGG | 0.423672 | 4.1:+14586672 | MS.gene09264:CDS |
| ATCTTTAATAACTTTAAAGA+TGG | 0.425147 | 4.1:+14597253 | MS.gene09264:CDS |
| TATGGCACGGACATTTATAT+TGG | 0.429442 | 4.1:-14591312 | None:intergenic |
| TAATAACTAGAGACAACATC+TGG | 0.432602 | 4.1:-14587716 | None:intergenic |
| CAAGAAGATGCTGACAATGC+TGG | 0.432766 | 4.1:+14598069 | MS.gene09264:CDS |
| CAGTCTACTAATGCCGTGTT+TGG | 0.437063 | 4.1:-14596188 | None:intergenic |
| GACAGATCATCTCTTGGATC+AGG | 0.442379 | 4.1:-14597328 | None:intergenic |
| TTATCAAGAGGCTTGGGAAA+TGG | 0.442785 | 4.1:+14588333 | MS.gene09264:CDS |
| GTGACTTGAGCACCAGCTCC+TGG | 0.443485 | 4.1:-14598843 | None:intergenic |
| TTAATAACTTTAAAGATGGC+CGG | 0.444869 | 4.1:+14597257 | MS.gene09264:CDS |
| GGTTCTTGAGAGATAAAATC+TGG | 0.445612 | 4.1:-14591414 | None:intergenic |
| CAGAAAATGGCAAGTACTCC+TGG | 0.445741 | 4.1:+14591139 | MS.gene09264:CDS |
| CATTGTCTTATCAAGAGGCT+TGG | 0.446236 | 4.1:+14588326 | MS.gene09264:CDS |
| GTTGTTGAAGTTGTCGTGTT+GGG | 0.452931 | 4.1:-14585968 | None:intergenic |
| GCAACCTTAAGGCCATGCTT+CGG | 0.454040 | 4.1:+14586824 | MS.gene09264:CDS |
| TGAGTCTTATATATCTTCCT+TGG | 0.456104 | 4.1:+14586708 | MS.gene09264:CDS |
| AAATGCGAGAGAAGTGAGAG+AGG | 0.460064 | 4.1:-14585933 | None:intergenic |
| ATTGTCTTATCAAGAGGCTT+GGG | 0.461098 | 4.1:+14588327 | MS.gene09264:CDS |
| TTAGCTCTTGTAAATGTTGA+GGG | 0.461391 | 4.1:+14588630 | MS.gene09264:CDS |
| CCACGCAAAGTGCTGACTAT+AGG | 0.461650 | 4.1:-14596837 | None:intergenic |
| GTCTTGATTGTAAATCCTAC+TGG | 0.462767 | 4.1:+14587870 | MS.gene09264:CDS |
| AAGAAGATGCTGACAATGCT+GGG | 0.463024 | 4.1:+14598070 | MS.gene09264:CDS |
| TCTGGCACTAGACTTTCAAT+TGG | 0.463231 | 4.1:-14597876 | None:intergenic |
| TAGCCCGAAGCATGGCCTTA+AGG | 0.464163 | 4.1:-14586828 | None:intergenic |
| CGCTCGGATTCCAAATAGTC+GGG | 0.464640 | 4.1:-14587909 | None:intergenic |
| TGGAACAGATGTTGCTAGAA+AGG | 0.465723 | 4.1:+14597351 | MS.gene09264:CDS |
| TAACGTTATCATGATATCTC+AGG | 0.468606 | 4.1:+14588878 | MS.gene09264:CDS |
| TCTTCATAATCACTAACAAC+AGG | 0.470083 | 4.1:-14588558 | None:intergenic |
| CTTGTTTCTTTGCAAACTCC+GGG | 0.470800 | 4.1:-14598050 | None:intergenic |
| TGGTCTGTTCACAAATTTGG+TGG | 0.471894 | 4.1:+14586538 | MS.gene09264:CDS |
| TGAGGTAGTTGGTGAAGCAA+AGG | 0.474066 | 4.1:+14597288 | MS.gene09264:CDS |
| GCACTCTACTCGATCAACTA+AGG | 0.475698 | 4.1:+14591477 | MS.gene09264:CDS |
| TCATCCATTTGCACAATTGT+CGG | 0.476880 | 4.1:+14598755 | MS.gene09264:CDS |
| GAAGTTGTCGTGTTGGGAGT+TGG | 0.479644 | 4.1:-14585962 | None:intergenic |
| GTTCCAGACAGATCATCTCT+TGG | 0.480054 | 4.1:-14597334 | None:intergenic |
| GGTTGCAGAACTGGAATGGC+TGG | 0.480922 | 4.1:+14588804 | MS.gene09264:intron |
| GACCCCGACAATTGTGCAAA+TGG | 0.481521 | 4.1:-14598759 | None:intergenic |
| ACTGCACATGACATACTTGA+TGG | 0.481804 | 4.1:+14586757 | MS.gene09264:CDS |
| CCTCTGATAGTTCGCGGGCC+AGG | 0.482336 | 4.1:+14598825 | MS.gene09264:CDS |
| TTTGGTGCAGTAAAAGATGT+TGG | 0.491702 | 4.1:+14588852 | MS.gene09264:CDS |
| TGAAGACATCAGCAACCTTA+AGG | 0.493168 | 4.1:+14586813 | MS.gene09264:CDS |
| CCATCCCGCTTCAATGTAGT+AGG | 0.493981 | 4.1:-14588014 | None:intergenic |
| AAAATAGCGCTAGCTGTACC+TGG | 0.496987 | 4.1:-14588831 | None:intergenic |
| TGTAATTACCCCAAATAAGA+AGG | 0.498233 | 4.1:+14596268 | MS.gene09264:CDS |
| ATTGCAAATGGATGGATACA+AGG | 0.498327 | 4.1:+14587844 | MS.gene09264:CDS |
| TACTTCTATGAAGCTACTGT+TGG | 0.498482 | 4.1:+14596804 | MS.gene09264:CDS |
| AGCTTTCGAAAGGAGACTCT+TGG | 0.501216 | 4.1:+14586518 | MS.gene09264:CDS |
| AATAATTCCCATTGCTATGG+TGG | 0.501521 | 4.1:-14591435 | None:intergenic |
| AGTGGAAACGGCGGGAGAGG+AGG | 0.502350 | 4.1:-14586023 | None:intergenic |
| GTTGGTGAAGCAAAGGAAGC+AGG | 0.502885 | 4.1:+14597295 | MS.gene09264:CDS |
| GATCCAAGAGATGATCTGTC+TGG | 0.502907 | 4.1:+14597331 | MS.gene09264:CDS |
| ACTCGATCAACTAAGGGATC+AGG | 0.506213 | 4.1:+14591484 | MS.gene09264:CDS |
| CCGAGCGAAGACTTGAGAAA+TGG | 0.506606 | 4.1:+14587925 | MS.gene09264:CDS |
| CTTAGCCAATGCGTTGAAAA+GGG | 0.507492 | 4.1:-14591173 | None:intergenic |
| TAATAACTTTAAAGATGGCC+GGG | 0.508147 | 4.1:+14597258 | MS.gene09264:CDS |
| GAAGACATTGTCTTATCAAG+AGG | 0.509521 | 4.1:+14588321 | MS.gene09264:CDS |
| TCCTACAACAAAATCTGTAA+AGG | 0.510625 | 4.1:-14587673 | None:intergenic |
| GTAGCAATAATTACCTTGCA+TGG | 0.510642 | 4.1:-14587960 | None:intergenic |
| CTTAGCTCTTGTAAATGTTG+AGG | 0.510677 | 4.1:+14588629 | MS.gene09264:CDS |
| AATGCTACAATTTGGGATAA+CGG | 0.512158 | 4.1:-14591101 | None:intergenic |
| AAGATAGATACCGGAGAGAG+TGG | 0.518399 | 4.1:-14586041 | None:intergenic |
| TTCATAGAAGTAGTGAGTAT+AGG | 0.519017 | 4.1:-14596793 | None:intergenic |
| AGAATGGAATTGATTGCAAA+TGG | 0.519410 | 4.1:+14587832 | MS.gene09264:intron |
| AAATTTGGTGGAACTTGTAT+GGG | 0.519729 | 4.1:+14586550 | MS.gene09264:CDS |
| TTCTGCAATGTCTAAGGTGA+CGG | 0.521017 | 4.1:+14586645 | MS.gene09264:CDS |
| TCAAGAACCACCATAGCAAT+GGG | 0.522346 | 4.1:+14591428 | MS.gene09264:CDS |
| AAAAGGGTGGCACTAACTCC+AGG | 0.522432 | 4.1:-14591157 | None:intergenic |
| AAATTTGCTCAGCACGTGCA+TGG | 0.522486 | 4.1:+14596152 | MS.gene09264:CDS |
| AAATTCGGGACCACTTGAGC+AGG | 0.528046 | 4.1:+14596292 | MS.gene09264:CDS |
| TCCAATAATTCCCATTGCTA+TGG | 0.529603 | 4.1:-14591438 | None:intergenic |
| TTGAGAGATAAAATCTGGAA+TGG | 0.530329 | 4.1:-14591409 | None:intergenic |
| AGTGAGTATAGGATTGCCTC+TGG | 0.532449 | 4.1:-14596782 | None:intergenic |
| CTTCTCCAAAACAGCATCCA+AGG | 0.533463 | 4.1:-14586725 | None:intergenic |
| GATTACTTTACCTGCTCAAG+TGG | 0.536276 | 4.1:-14596302 | None:intergenic |
| CGAATTTGCCTTCTTATTTG+GGG | 0.536880 | 4.1:-14596276 | None:intergenic |
| TCAGGCGTGTGCATCAGCTC+AGG | 0.537437 | 4.1:+14597999 | MS.gene09264:intron |
| TACTGTTGTTATTAAGCGAG+AGG | 0.538305 | 4.1:+14591361 | MS.gene09264:CDS |
| TGACGACATTGAGAATCGGC+GGG | 0.538664 | 4.1:-14585997 | None:intergenic |
| CCATTTCTCAAGTCTTCGCT+CGG | 0.540121 | 4.1:-14587925 | None:intergenic |
| ACAATTTGGACAGATGTTGA+TGG | 0.540321 | 4.1:+14588089 | MS.gene09264:CDS |
| TCTTCTTTCTGCAGTTAGTG+AGG | 0.540904 | 4.1:+14588288 | MS.gene09264:intron |
| TATAGTGCAGATCCTAGAAA+AGG | 0.542051 | 4.1:+14588116 | MS.gene09264:CDS |
| TACTATGATTGGTTGTGCAA+AGG | 0.543042 | 4.1:+14596239 | MS.gene09264:CDS |
| CTCAAGAACCACCATAGCAA+TGG | 0.545551 | 4.1:+14591427 | MS.gene09264:CDS |
| CTCAGAACAACCTTGTGCTA+TGG | 0.545614 | 4.1:-14591330 | None:intergenic |
| TCACAAAGAATAAAGAATGT+TGG | 0.549736 | 4.1:+14586577 | MS.gene09264:CDS |
| TATTCCTACTACATTGAAGC+GGG | 0.550695 | 4.1:+14588010 | MS.gene09264:CDS |
| TATGAAGCTACTGTTGGAGC+TGG | 0.552013 | 4.1:+14596810 | MS.gene09264:CDS |
| TGGAATTGATTGCAAATGGA+TGG | 0.552490 | 4.1:+14587836 | MS.gene09264:CDS |
| TGATGGAGCGCCTAGATATG+AGG | 0.553770 | 4.1:-14598901 | None:intergenic |
| GCAATGGGAATTATTGGACC+AGG | 0.557880 | 4.1:+14591443 | MS.gene09264:CDS |
| GAAGTGACGACATTGAGAAT+CGG | 0.558777 | 4.1:-14586001 | None:intergenic |
| GAAAGGGAATTACGTTACCT+TGG | 0.558934 | 4.1:+14586322 | MS.gene09264:intron |
| TGTTGTTGAAGTTGTCGTGT+TGG | 0.559382 | 4.1:-14585969 | None:intergenic |
| AAATTGGTTCTTACCCGTAG+TGG | 0.559667 | 4.1:-14597900 | None:intergenic |
| GTCTAGTGCCAGAACCACTA+CGG | 0.560015 | 4.1:+14597886 | MS.gene09264:CDS |
| AATGCGAGAGAAGTGAGAGA+GGG | 0.560658 | 4.1:-14585932 | None:intergenic |
| GCTGGTGCTCAAGTCACAGC+GGG | 0.561102 | 4.1:+14598849 | MS.gene09264:CDS |
| TAGCAAGGTGGAAAGAACTT+CGG | 0.561764 | 4.1:+14596099 | MS.gene09264:CDS |
| GCAGGGGTATTGACTTAGCA+AGG | 0.562277 | 4.1:+14596084 | MS.gene09264:intron |
| ATCATCTCTTGGATCAGGCT+CGG | 0.567042 | 4.1:-14597323 | None:intergenic |
| AAACCTTGATTGCAATGCCT+CGG | 0.569657 | 4.1:-14589080 | None:intergenic |
| CCGGAGAGAGTGGAAACGGC+GGG | 0.572150 | 4.1:-14586031 | None:intergenic |
| TTGCAGAATGACATCTATGA+TGG | 0.572950 | 4.1:-14598918 | None:intergenic |
| TCTAGTGCCAGAACCACTAC+GGG | 0.573079 | 4.1:+14597887 | MS.gene09264:CDS |
| GATACCGGAGAGAGTGGAAA+CGG | 0.573419 | 4.1:-14586035 | None:intergenic |
| GAAGAGAGTCACCGAGCTCT+GGG | 0.574321 | 4.1:+14586346 | MS.gene09264:CDS |
| CCCGCCGTTTCCACTCTCTC+CGG | 0.574503 | 4.1:+14586031 | MS.gene09264:CDS |
| AAAGAACTTCGGGAGGAAAG+AGG | 0.576942 | 4.1:+14596110 | MS.gene09264:CDS |
| GTTGTCTCTAGTTATTAGGA+AGG | 0.577162 | 4.1:+14587722 | MS.gene09264:CDS |
| AATCAACCTCTGATAGTTCG+CGG | 0.577271 | 4.1:+14598819 | MS.gene09264:CDS |
| GGTATGCCATATCTCATCAC+AGG | 0.577975 | 4.1:-14588480 | None:intergenic |
| CCTATAGTCAGCACTTTGCG+TGG | 0.579016 | 4.1:+14596837 | MS.gene09264:CDS |
| TACAGGTGATAATTCTCGCA+AGG | 0.579848 | 4.1:+14597820 | MS.gene09264:intron |
| ATCAACCTCTGATAGTTCGC+GGG | 0.582260 | 4.1:+14598820 | MS.gene09264:CDS |
| TGCACAACCAATCATAGTAA+TGG | 0.583719 | 4.1:-14596235 | None:intergenic |
| GGTGCTCAAGTCACAGCGGG+TGG | 0.586582 | 4.1:+14598852 | MS.gene09264:CDS |
| ATGCTTCGGGCTATATACAT+AGG | 0.590856 | 4.1:+14586838 | MS.gene09264:CDS |
| GGATGACATATCTTTGTCCC+AGG | 0.593723 | 4.1:-14588537 | None:intergenic |
| TCGCTCGGATTCCAAATAGT+CGG | 0.594375 | 4.1:-14587910 | None:intergenic |
| AACAACCTTGTGCTATGGCA+CGG | 0.594804 | 4.1:-14591325 | None:intergenic |
| TGCAGATGTTTCGGTGAATG+TGG | 0.594963 | 4.1:+14586480 | MS.gene09264:intron |
| ATGCTTTGCTGTGCCCGAGA+AGG | 0.595305 | 4.1:+14589042 | MS.gene09264:CDS |
| AACAACCACCAATTTCCTCT+CGG | 0.595610 | 4.1:-14586623 | None:intergenic |
| ATTGAGATACGTGGGAGTGG+TGG | 0.596662 | 4.1:+14598683 | MS.gene09264:CDS |
| CCTGGCCCGCGAACTATCAG+AGG | 0.604093 | 4.1:-14598825 | None:intergenic |
| TGAAGAAAACGACGACGCCA+TGG | 0.604386 | 4.1:-14585908 | None:intergenic |
| CTCGGTGACTCTCTTCGCCA+AGG | 0.605242 | 4.1:-14586339 | None:intergenic |
| ATCCATTTGCACAATTGTCG+GGG | 0.609087 | 4.1:+14598757 | MS.gene09264:CDS |
| GGTATTGAGATACGTGGGAG+TGG | 0.611935 | 4.1:+14598680 | MS.gene09264:intron |
| CAACTACCTCACTAAAAGCC+CGG | 0.613623 | 4.1:-14597276 | None:intergenic |
| GAAGCGCATATCCCAGAGCT+CGG | 0.618674 | 4.1:-14586357 | None:intergenic |
| CCTACTACATTGAAGCGGGA+TGG | 0.618759 | 4.1:+14588014 | MS.gene09264:CDS |
| TGTTTCGGTGAATGTGGCAG+TGG | 0.621050 | 4.1:+14586486 | MS.gene09264:CDS |
| CACTCTACTCGATCAACTAA+GGG | 0.622861 | 4.1:+14591478 | MS.gene09264:CDS |
| TCGGGAGGAAAGAGGAGAAG+CGG | 0.624010 | 4.1:+14596118 | MS.gene09264:CDS |
| TATGTATATAGCCCGAAGCA+TGG | 0.625065 | 4.1:-14586836 | None:intergenic |
| GTGACGACATTGAGAATCGG+CGG | 0.629194 | 4.1:-14585998 | None:intergenic |
| GTACTCTCTGAATCCATGCA+AGG | 0.630729 | 4.1:+14587947 | MS.gene09264:CDS |
| CAATGGGAATTATTGGACCA+GGG | 0.633816 | 4.1:+14591444 | MS.gene09264:CDS |
| ACAGGTGATAATTCTCGCAA+GGG | 0.634755 | 4.1:+14597821 | MS.gene09264:intron |
| TTCGGTGAATGTGGCAGTGG+AGG | 0.635017 | 4.1:+14586489 | MS.gene09264:CDS |
| ACCGGAGAGAGTGGAAACGG+CGG | 0.637054 | 4.1:-14586032 | None:intergenic |
| TAATTGCATTCACAACAAGA+AGG | 0.639179 | 4.1:+14598790 | MS.gene09264:CDS |
| ATATTCCTACTACATTGAAG+CGG | 0.645786 | 4.1:+14588009 | MS.gene09264:CDS |
| ATCACAGGAATTATTGTGCG+AGG | 0.646652 | 4.1:-14588465 | None:intergenic |
| TAGCTCTTGTAAATGTTGAG+GGG | 0.647826 | 4.1:+14588631 | MS.gene09264:CDS |
| TTGCAAATGGATGGATACAA+GGG | 0.649756 | 4.1:+14587845 | MS.gene09264:CDS |
| CACGGCATTAGTAGACTGCA+CGG | 0.650478 | 4.1:+14596193 | MS.gene09264:CDS |
| AATGTCCGTGCCATAGCACA+AGG | 0.651217 | 4.1:+14591320 | MS.gene09264:CDS |
| AGCCAATGCGTTGAAAAGGG+TGG | 0.651417 | 4.1:-14591170 | None:intergenic |
| GGAAGTAAAAGCTGTTGCCG+AGG | 0.655331 | 4.1:+14589063 | MS.gene09264:CDS |
| AGAGCTGCGAAGATACAAGA+AGG | 0.656222 | 4.1:+14598731 | MS.gene09264:CDS |
| TCTTTGTCCCAGGAGCAGAA+AGG | 0.657330 | 4.1:-14588527 | None:intergenic |
| TGAGGTTAAGAGCTCTCCAG+AGG | 0.660123 | 4.1:+14596766 | MS.gene09264:CDS |
| TCAACTTGATTAGAACCAGT+AGG | 0.662926 | 4.1:-14587885 | None:intergenic |
| TGATTCCGAGAGGAAATTGG+TGG | 0.664157 | 4.1:+14586618 | MS.gene09264:CDS |
| AATAACTAGAGACAACATCT+GGG | 0.664378 | 4.1:-14587715 | None:intergenic |
| TTGTAGGTATTGAGATACGT+GGG | 0.666439 | 4.1:+14598675 | MS.gene09264:intron |
| TTTGTAGGTATTGAGATACG+TGG | 0.669349 | 4.1:+14598674 | MS.gene09264:intron |
| AGAGTGCTCCCAATTAACCC+TGG | 0.678345 | 4.1:-14591461 | None:intergenic |
| ACAGCTACCAAAATTTGACC+CGG | 0.679982 | 4.1:+14598032 | MS.gene09264:CDS |
| AGAAGATGCTGACAATGCTG+GGG | 0.682028 | 4.1:+14598071 | MS.gene09264:CDS |
| GACGACATTGAGAATCGGCG+GGG | 0.702844 | 4.1:-14585996 | None:intergenic |
| AAGGTGGAAAGAACTTCGGG+AGG | 0.708619 | 4.1:+14596103 | MS.gene09264:CDS |
| AGCTGGTGCTCAAGTCACAG+CGG | 0.710898 | 4.1:+14598848 | MS.gene09264:CDS |
| TTCTCAATGATGATTCCGAG+AGG | 0.724505 | 4.1:+14586608 | MS.gene09264:CDS |
| GGGGTATTGACTTAGCAAGG+TGG | 0.731508 | 4.1:+14596087 | MS.gene09264:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14585910 | 14598926 | 14585910 | ID=MS.gene09264 |
| chr4.1 | mRNA | 14585910 | 14598926 | 14585910 | ID=MS.gene09264.t1;Parent=MS.gene09264 |
| chr4.1 | exon | 14585910 | 14586052 | 14585910 | ID=MS.gene09264.t1.exon1;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14585910 | 14586052 | 14585910 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14586323 | 14586387 | 14586323 | ID=MS.gene09264.t1.exon2;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14586323 | 14586387 | 14586323 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14586485 | 14586859 | 14586485 | ID=MS.gene09264.t1.exon3;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14586485 | 14586859 | 14586485 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14587655 | 14587743 | 14587655 | ID=MS.gene09264.t1.exon4;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14587655 | 14587743 | 14587655 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14587834 | 14588137 | 14587834 | ID=MS.gene09264.t1.exon5;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14587834 | 14588137 | 14587834 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14588302 | 14588354 | 14588302 | ID=MS.gene09264.t1.exon6;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14588302 | 14588354 | 14588302 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14588438 | 14588652 | 14588438 | ID=MS.gene09264.t1.exon7;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14588438 | 14588652 | 14588438 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14588812 | 14588899 | 14588812 | ID=MS.gene09264.t1.exon8;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14588812 | 14588899 | 14588812 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14589022 | 14589135 | 14589022 | ID=MS.gene09264.t1.exon9;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14589022 | 14589135 | 14589022 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14591097 | 14591195 | 14591097 | ID=MS.gene09264.t1.exon10;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14591097 | 14591195 | 14591097 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14591311 | 14591505 | 14591311 | ID=MS.gene09264.t1.exon11;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14591311 | 14591505 | 14591311 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14595173 | 14595255 | 14595173 | ID=MS.gene09264.t1.exon12;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14595173 | 14595255 | 14595173 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14596088 | 14596313 | 14596088 | ID=MS.gene09264.t1.exon13;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14596088 | 14596313 | 14596088 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14596762 | 14596907 | 14596762 | ID=MS.gene09264.t1.exon14;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14596762 | 14596907 | 14596762 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14597237 | 14597372 | 14597237 | ID=MS.gene09264.t1.exon15;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14597237 | 14597372 | 14597237 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14597825 | 14597908 | 14597825 | ID=MS.gene09264.t1.exon16;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14597825 | 14597908 | 14597825 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14598003 | 14598095 | 14598003 | ID=MS.gene09264.t1.exon17;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14598003 | 14598095 | 14598003 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| chr4.1 | exon | 14598681 | 14598926 | 14598681 | ID=MS.gene09264.t1.exon18;Parent=MS.gene09264.t1 |
| chr4.1 | CDS | 14598681 | 14598926 | 14598681 | ID=cds.MS.gene09264.t1;Parent=MS.gene09264.t1 |
| Gene Sequence |
| Protein sequence |
