Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057056.t1 | XP_003617748.1 | 88.8 | 313 | 35 | 0 | 7 | 319 | 1 | 313 | 1.60E-112 | 416 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057056.t1 | Q5NCR9 | 41.2 | 165 | 92 | 4 | 62 | 224 | 62 | 223 | 1.8e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057056.t1 | B7FNC6 | 88.8 | 313 | 35 | 0 | 7 | 319 | 1 | 313 | 1.1e-112 | 416.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057055 | MS.gene057056 | 0.896558 | 3.29E-76 | -1.69E-46 |
| MS.gene057056 | MS.gene63903 | 0.94773 | 3.81E-106 | -1.69E-46 |
| MS.gene057056 | MS.gene63904 | 0.95486 | 1.14E-112 | -1.69E-46 |
| MS.gene057056 | MS.gene81360 | 0.93139 | 4.06E-94 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTTCTGAATCAGGTTT+TGG | 0.253915 | 5.4:-44465097 | None:intergenic |
| ATCATCTTTGCTTCTCTCCT+TGG | 0.304596 | 5.4:-44465165 | None:intergenic |
| TCTGCAGAAGCATCGGGATT+TGG | 0.314331 | 5.4:-44465822 | None:intergenic |
| TGCTGCTGATTTGATGCATC+AGG | 0.317421 | 5.4:-44465663 | None:intergenic |
| CTCATTCCCTCACGTTTCTC+TGG | 0.342667 | 5.4:-44465639 | None:intergenic |
| GGCCTCGGTGGTTGCTTCTT+CGG | 0.365460 | 5.4:-44464310 | None:intergenic |
| TGTAACATATTTGTCTTTGT+CGG | 0.367853 | 5.4:-44465198 | None:intergenic |
| GAAGCTGGTGGCTTCTCAAC+TGG | 0.367854 | 5.4:-44465855 | None:intergenic |
| CCGCTTCAAATGAACAAGTA+TGG | 0.396751 | 5.4:+44464265 | MS.gene057056:CDS |
| GACTCCGTCATAATCAAATA+TGG | 0.404782 | 5.4:-44464580 | None:intergenic |
| GGTTGCTTCTTCGGCTTCGC+AGG | 0.425435 | 5.4:-44464301 | None:intergenic |
| ACAAGTATGGCTTGAACCTT+AGG | 0.429919 | 5.4:+44464278 | MS.gene057056:CDS |
| TTTCTCTGGAACTCTATTCT+CGG | 0.444819 | 5.4:-44465625 | None:intergenic |
| TCAGGATTTGGTTGTGAAGC+TGG | 0.459984 | 5.4:-44465870 | None:intergenic |
| AGGGGAGAAAACGTGACAAT+CGG | 0.466476 | 5.4:+44465601 | MS.gene057056:CDS |
| TCTTCGGCTTCGCAGGCCTA+AGG | 0.474287 | 5.4:-44464294 | None:intergenic |
| CCGAGGGCAATGGACGGCCT+CGG | 0.490294 | 5.4:-44464325 | None:intergenic |
| TTCATTAAAGCCGAGGGCAA+TGG | 0.490951 | 5.4:-44464335 | None:intergenic |
| AGTTCACCAGAAGAGTCTCC+AGG | 0.503593 | 5.4:+44465729 | MS.gene057056:CDS |
| GGGGAGAAAACGTGACAATC+GGG | 0.504890 | 5.4:+44465602 | MS.gene057056:CDS |
| TCTTCGCGATCTTGTATCAA+TGG | 0.506015 | 5.4:-44464633 | None:intergenic |
| TAATAGAAGTGCCAGTCCCT+TGG | 0.509927 | 5.4:+44465791 | MS.gene057056:CDS |
| ACAAGATCGCGAAGAGAGAA+AGG | 0.511139 | 5.4:+44464641 | MS.gene057056:CDS |
| CCATACTTGTTCATTTGAAG+CGG | 0.523653 | 5.4:-44464265 | None:intergenic |
| ACGTATACGCGAACTTCAAG+AGG | 0.525424 | 5.4:+44465271 | MS.gene057056:CDS |
| GGAGCAGCAAAGAAAAGCCT+TGG | 0.526026 | 5.4:+44464545 | MS.gene057056:CDS |
| TGATGCATCAAATCAGCAGC+AGG | 0.545607 | 5.4:+44465665 | MS.gene057056:CDS |
| TGCATAGGTTACGAAGAAGA+AGG | 0.547399 | 5.4:+44465515 | MS.gene057056:intron |
| TGGCTTCATAGCCAAGGGAC+TGG | 0.560491 | 5.4:-44465802 | None:intergenic |
| CATCATCTTCATTAAAGCCG+AGG | 0.561447 | 5.4:-44464342 | None:intergenic |
| ATCATCTTCATTAAAGCCGA+GGG | 0.562099 | 5.4:-44464341 | None:intergenic |
| GGATTTGGTTGTGAAGCTGG+TGG | 0.565744 | 5.4:-44465867 | None:intergenic |
| CCGAGGCCGTCCATTGCCCT+CGG | 0.571438 | 5.4:+44464325 | MS.gene057056:CDS |
| GGGATTTGGCTTCATAGCCA+AGG | 0.575475 | 5.4:-44465808 | None:intergenic |
| TAGCAAGAGTAAAAGTCTCA+AGG | 0.575504 | 5.4:+44464399 | MS.gene057056:CDS |
| GCTGCTGATTTGATGCATCA+GGG | 0.575527 | 5.4:-44465662 | None:intergenic |
| GGATTTGGCTTCATAGCCAA+GGG | 0.576616 | 5.4:-44465807 | None:intergenic |
| TATGGTCGGATCTTCTTCCA+AGG | 0.578834 | 5.4:-44464562 | None:intergenic |
| AGGGCAATGGACGGCCTCGG+TGG | 0.589223 | 5.4:-44464322 | None:intergenic |
| CCGACCATATTTGATTATGA+CGG | 0.590424 | 5.4:+44464576 | MS.gene057056:CDS |
| AGATGAAGAGCAACATTCGT+TGG | 0.592495 | 5.4:+44465698 | MS.gene057056:CDS |
| TTTGGTGCAAAAGATGCTCA+GGG | 0.602366 | 5.4:+44465582 | MS.gene057056:CDS |
| CAAAAGAAGTCAAGATGCTG+TGG | 0.604246 | 5.4:+44465899 | MS.gene057056:CDS |
| ATTTGTCTTTGTCGGCAAAG+AGG | 0.614244 | 5.4:-44465190 | None:intergenic |
| CCGTCATAATCAAATATGGT+CGG | 0.619416 | 5.4:-44464576 | None:intergenic |
| CGAACTTCAAGAGGAAAGAG+AGG | 0.624167 | 5.4:+44465280 | MS.gene057056:CDS |
| TGCTGAACGAGAGAAACAGA+TGG | 0.626499 | 5.4:+44465241 | MS.gene057056:CDS |
| TAGAGTTCCAGAGAAACGTG+AGG | 0.630094 | 5.4:+44465632 | MS.gene057056:CDS |
| AAATCCCGATGCTTCTGCAG+AGG | 0.635355 | 5.4:+44465824 | MS.gene057056:CDS |
| GCATCAAATCAGCAGCAGGA+TGG | 0.636667 | 5.4:+44465669 | MS.gene057056:CDS |
| GTTCACCAGAAGAGTCTCCA+GGG | 0.644434 | 5.4:+44465730 | MS.gene057056:CDS |
| AGAGTTCCAGAGAAACGTGA+GGG | 0.653129 | 5.4:+44465633 | MS.gene057056:CDS |
| TTAAAGCCGAGGGCAATGGA+CGG | 0.661471 | 5.4:-44464331 | None:intergenic |
| AGCCGAAGAAGCAACCACCG+AGG | 0.687950 | 5.4:+44464308 | MS.gene057056:CDS |
| TTGGTGCAAAAGATGCTCAG+GGG | 0.730452 | 5.4:+44465583 | MS.gene057056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACCAAA+TGG | - | chr5.4:44464502-44464521 | None:intergenic | 10.0% |
| !! | AACAAATTAAACAAAATTAT+TGG | - | chr5.4:44464967-44464986 | None:intergenic | 10.0% |
| !! | ATTAAACAAAATTATTGGAA+AGG | - | chr5.4:44464962-44464981 | None:intergenic | 15.0% |
| !!! | ATTTAAAATAGTGTTTTCAT+TGG | + | chr5.4:44464886-44464905 | MS.gene057056:intron | 15.0% |
| !!! | GATTTTCATGTATTTTAAAA+TGG | + | chr5.4:44465376-44465395 | MS.gene057056:intron | 15.0% |
| !!! | GTTTTTTATTTTACTTTCTT+GGG | + | chr5.4:44464984-44465003 | MS.gene057056:intron | 15.0% |
| !!! | TGTTTTTTATTTTACTTTCT+TGG | + | chr5.4:44464983-44465002 | MS.gene057056:intron | 15.0% |
| !!! | TTGTTTTTAATTATTTGCAT+AGG | + | chr5.4:44465500-44465519 | MS.gene057056:intron | 15.0% |
| !!! | TTTTAAAATACATGAAAATC+AGG | - | chr5.4:44465376-44465395 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTACTTTCTTG+GGG | + | chr5.4:44464985-44465004 | MS.gene057056:intron | 15.0% |
| !! | AAATTAACTGAAAAAGTTGA+GGG | - | chr5.4:44465424-44465443 | None:intergenic | 20.0% |
| !! | AATGAATTACTGAAAAAAAC+AGG | - | chr5.4:44465315-44465334 | None:intergenic | 20.0% |
| !! | ATGTCAGTAATTCAAAATAT+AGG | - | chr5.4:44465477-44465496 | None:intergenic | 20.0% |
| !! | CTCATAATTATGATGAAATT+TGG | - | chr5.4:44464763-44464782 | None:intergenic | 20.0% |
| !! | GTAATTCAAAATATAGGTAT+AGG | - | chr5.4:44465471-44465490 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTACTTTCTTGG+GGG | + | chr5.4:44464986-44465005 | MS.gene057056:intron | 20.0% |
| !!! | TTTTTTCTTTCCCTTATTTA+AGG | + | chr5.4:44464518-44464537 | MS.gene057056:intron | 20.0% |
| ! | ATATTCACATACTTACATGA+TGG | + | chr5.4:44464809-44464828 | MS.gene057056:intron | 25.0% |
| ! | CAAATTAACTGAAAAAGTTG+AGG | - | chr5.4:44465425-44465444 | None:intergenic | 25.0% |
| ! | TAATTTGGTATGCTTGTTTA+TGG | + | chr5.4:44465438-44465457 | MS.gene057056:intron | 25.0% |
| ! | TGTAACATATTTGTCTTTGT+CGG | - | chr5.4:44465201-44465220 | None:intergenic | 25.0% |
| ! | TTATGATCTAACTTTCCATT+TGG | + | chr5.4:44464484-44464503 | MS.gene057056:intron | 25.0% |
| !! | CAAAAGCAACATTTTTATCA+AGG | - | chr5.4:44465566-44465585 | None:intergenic | 25.0% |
| !!! | ATCAGGTTTTGGATATATTT+TGG | - | chr5.4:44465089-44465108 | None:intergenic | 25.0% |
| !!! | CTCAACTTTTTCAGTTAATT+TGG | + | chr5.4:44465423-44465442 | MS.gene057056:intron | 25.0% |
| !!! | CTTGATAAAAATGTTGCTTT+TGG | + | chr5.4:44465564-44465583 | MS.gene057056:CDS | 25.0% |
| !!! | GTAAACCTTACATTTTAATC+TGG | + | chr5.4:44464428-44464447 | MS.gene057056:intron | 25.0% |
| !!! | TGTGTTCATTTTGGTTAATT+TGG | + | chr5.4:44465021-44465040 | MS.gene057056:intron | 25.0% |
| ATATGAGAAAAAGATTGCCA+AGG | + | chr5.4:44465148-44465167 | MS.gene057056:CDS | 30.0% | |
| TATGCACTTTCATATTGCAA+AGG | - | chr5.4:44464792-44464811 | None:intergenic | 30.0% | |
| TGAAAAAGAAATTGCTATCC+AGG | + | chr5.4:44464375-44464394 | MS.gene057056:CDS | 30.0% | |
| ! | AAGATACAGTCAATTTTCCT+AGG | - | chr5.4:44464837-44464856 | None:intergenic | 30.0% |
| ! | ATGCTGAAATGTGTTCATTT+TGG | + | chr5.4:44465012-44465031 | MS.gene057056:intron | 30.0% |
| !! | AACCTTACATTTTAATCTGG+TGG | + | chr5.4:44464431-44464450 | MS.gene057056:intron | 30.0% |
| !!! | TGTTTTCATTGGTTTAGAGA+AGG | + | chr5.4:44464897-44464916 | MS.gene057056:intron | 30.0% |
| AAAAGTTGAGGGAGAAAGAA+AGG | - | chr5.4:44465413-44465432 | None:intergenic | 35.0% | |
| AGCCACCAGATTAAAATGTA+AGG | - | chr5.4:44464436-44464455 | None:intergenic | 35.0% | |
| AGCTCAGTAGAGAATCATAA+CGG | + | chr5.4:44464727-44464746 | MS.gene057056:intron | 35.0% | |
| ATCATCTTCATTAAAGCCGA+GGG | - | chr5.4:44464344-44464363 | None:intergenic | 35.0% | |
| CCATACTTGTTCATTTGAAG+CGG | - | chr5.4:44464268-44464287 | None:intergenic | 35.0% | |
| CCGACCATATTTGATTATGA+CGG | + | chr5.4:44464576-44464595 | MS.gene057056:CDS | 35.0% | |
| CCGTCATAATCAAATATGGT+CGG | - | chr5.4:44464579-44464598 | None:intergenic | 35.0% | |
| GACTCCGTCATAATCAAATA+TGG | - | chr5.4:44464583-44464602 | None:intergenic | 35.0% | |
| TAGCAAGAGTAAAAGTCTCA+AGG | + | chr5.4:44464399-44464418 | MS.gene057056:CDS | 35.0% | |
| TGCTCCTCAACCTTAAATAA+GGG | - | chr5.4:44464531-44464550 | None:intergenic | 35.0% | |
| ! | CTTTCCCTTATTTAAGGTTG+AGG | + | chr5.4:44464524-44464543 | MS.gene057056:intron | 35.0% |
| ! | TTGCTTTCTGAATCAGGTTT+TGG | - | chr5.4:44465100-44465119 | None:intergenic | 35.0% |
| !! | ATACTTACATGATGGATCCT+AGG | + | chr5.4:44464817-44464836 | MS.gene057056:intron | 35.0% |
| !! | TTTCTCTGGAACTCTATTCT+CGG | - | chr5.4:44465628-44465647 | None:intergenic | 35.0% |
| ACAAGTATGGCTTGAACCTT+AGG | + | chr5.4:44464278-44464297 | MS.gene057056:CDS | 40.0% | |
| AGATGAAGAGCAACATTCGT+TGG | + | chr5.4:44465698-44465717 | MS.gene057056:CDS | 40.0% | |
| ATCATCTTTGCTTCTCTCCT+TGG | - | chr5.4:44465168-44465187 | None:intergenic | 40.0% | |
| ATTTGTCTTTGTCGGCAAAG+AGG | - | chr5.4:44465193-44465212 | None:intergenic | 40.0% | |
| CAAAAGAAGTCAAGATGCTG+TGG | + | chr5.4:44465899-44465918 | MS.gene057056:CDS | 40.0% | |
| CATCATCTTCATTAAAGCCG+AGG | - | chr5.4:44464345-44464364 | None:intergenic | 40.0% | |
| CCGCTTCAAATGAACAAGTA+TGG | + | chr5.4:44464265-44464284 | MS.gene057056:CDS | 40.0% | |
| CTGCTCCTCAACCTTAAATA+AGG | - | chr5.4:44464532-44464551 | None:intergenic | 40.0% | |
| TCTTCGCGATCTTGTATCAA+TGG | - | chr5.4:44464636-44464655 | None:intergenic | 40.0% | |
| TGCATAGGTTACGAAGAAGA+AGG | + | chr5.4:44465515-44465534 | MS.gene057056:intron | 40.0% | |
| ! | AGGGAAAAAGATTGGTGATC+AGG | + | chr5.4:44465749-44465768 | MS.gene057056:CDS | 40.0% |
| ! | CTTTTGTGATGCTCAGGATT+TGG | - | chr5.4:44465885-44465904 | None:intergenic | 40.0% |
| ! | GCTCTTTTGCTTTCTGAATC+AGG | - | chr5.4:44465106-44465125 | None:intergenic | 40.0% |
| ! | GGGAAAAAGATTGGTGATCA+GGG | + | chr5.4:44465750-44465769 | MS.gene057056:CDS | 40.0% |
| ! | TGACTTCTTTTGTGATGCTC+AGG | - | chr5.4:44465891-44465910 | None:intergenic | 40.0% |
| ! | TGATCACCAATCTTTTTCCC+TGG | - | chr5.4:44465750-44465769 | None:intergenic | 40.0% |
| ! | TGCAGCAAAAGAACGTTTTC+TGG | + | chr5.4:44465923-44465942 | MS.gene057056:CDS | 40.0% |
| ! | TTTGGTGCAAAAGATGCTCA+GGG | + | chr5.4:44465582-44465601 | MS.gene057056:CDS | 40.0% |
| !! | TTTTGGTGCAAAAGATGCTC+AGG | + | chr5.4:44465581-44465600 | MS.gene057056:CDS | 40.0% |
| ACAAGATCGCGAAGAGAGAA+AGG | + | chr5.4:44464641-44464660 | MS.gene057056:CDS | 45.0% | |
| ACGTATACGCGAACTTCAAG+AGG | + | chr5.4:44465271-44465290 | MS.gene057056:CDS | 45.0% | |
| AGAGTTCCAGAGAAACGTGA+GGG | + | chr5.4:44465633-44465652 | MS.gene057056:CDS | 45.0% | |
| AGGGGAGAAAACGTGACAAT+CGG | + | chr5.4:44465601-44465620 | MS.gene057056:CDS | 45.0% | |
| ATCGCGAAGAGAGAAAGGTA+TGG | + | chr5.4:44464646-44464665 | MS.gene057056:intron | 45.0% | |
| CGAACTTCAAGAGGAAAGAG+AGG | + | chr5.4:44465280-44465299 | MS.gene057056:CDS | 45.0% | |
| GAGTCTCCAGGGAAAAAGAT+TGG | + | chr5.4:44465741-44465760 | MS.gene057056:CDS | 45.0% | |
| TAGAGTTCCAGAGAAACGTG+AGG | + | chr5.4:44465632-44465651 | MS.gene057056:CDS | 45.0% | |
| TATGGTCGGATCTTCTTCCA+AGG | - | chr5.4:44464565-44464584 | None:intergenic | 45.0% | |
| TGATGCATCAAATCAGCAGC+AGG | + | chr5.4:44465665-44465684 | MS.gene057056:CDS | 45.0% | |
| TGCTGAACGAGAGAAACAGA+TGG | + | chr5.4:44465241-44465260 | MS.gene057056:CDS | 45.0% | |
| TTCATTAAAGCCGAGGGCAA+TGG | - | chr5.4:44464338-44464357 | None:intergenic | 45.0% | |
| TTGGTGCAAAAGATGCTCAG+GGG | + | chr5.4:44465583-44465602 | MS.gene057056:CDS | 45.0% | |
| ! | GACTTTTACTCTTGCTAGCC+TGG | - | chr5.4:44464396-44464415 | None:intergenic | 45.0% |
| ! | GGATTTGGCTTCATAGCCAA+GGG | - | chr5.4:44465810-44465829 | None:intergenic | 45.0% |
| ! | TCAGGATTTGGTTGTGAAGC+TGG | - | chr5.4:44465873-44465892 | None:intergenic | 45.0% |
| ! | TTTTTCCCTGGAGACTCTTC+TGG | - | chr5.4:44465738-44465757 | None:intergenic | 45.0% |
| !! | CTTTTCCTCTGCAGAAGCAT+CGG | - | chr5.4:44465832-44465851 | None:intergenic | 45.0% |
| !! | GCTGCTGATTTGATGCATCA+GGG | - | chr5.4:44465665-44465684 | None:intergenic | 45.0% |
| !! | TAATAGAAGTGCCAGTCCCT+TGG | + | chr5.4:44465791-44465810 | MS.gene057056:CDS | 45.0% |
| !! | TGCTGCTGATTTGATGCATC+AGG | - | chr5.4:44465666-44465685 | None:intergenic | 45.0% |
| !!! | TTTTCCTCTGCAGAAGCATC+GGG | - | chr5.4:44465831-44465850 | None:intergenic | 45.0% |
| AAATCCCGATGCTTCTGCAG+AGG | + | chr5.4:44465824-44465843 | MS.gene057056:CDS | 50.0% | |
| AGTTCACCAGAAGAGTCTCC+AGG | + | chr5.4:44465729-44465748 | MS.gene057056:CDS | 50.0% | |
| CTCATTCCCTCACGTTTCTC+TGG | - | chr5.4:44465642-44465661 | None:intergenic | 50.0% | |
| GCATCAAATCAGCAGCAGGA+TGG | + | chr5.4:44465669-44465688 | MS.gene057056:CDS | 50.0% | |
| GGAGCAGCAAAGAAAAGCCT+TGG | + | chr5.4:44464545-44464564 | MS.gene057056:CDS | 50.0% | |
| GGGGAGAAAACGTGACAATC+GGG | + | chr5.4:44465602-44465621 | MS.gene057056:CDS | 50.0% | |
| GTTCACCAGAAGAGTCTCCA+GGG | + | chr5.4:44465730-44465749 | MS.gene057056:CDS | 50.0% | |
| TTAAAGCCGAGGGCAATGGA+CGG | - | chr5.4:44464334-44464353 | None:intergenic | 50.0% | |
| ! | GGATTTGGTTGTGAAGCTGG+TGG | - | chr5.4:44465870-44465889 | None:intergenic | 50.0% |
| ! | GGGATTTGGCTTCATAGCCA+AGG | - | chr5.4:44465811-44465830 | None:intergenic | 50.0% |
| !! | TCTGCAGAAGCATCGGGATT+TGG | - | chr5.4:44465825-44465844 | None:intergenic | 50.0% |
| GAAGCTGGTGGCTTCTCAAC+TGG | - | chr5.4:44465858-44465877 | None:intergenic | 55.0% | |
| TGGCTTCATAGCCAAGGGAC+TGG | - | chr5.4:44465805-44465824 | None:intergenic | 55.0% | |
| AGCCGAAGAAGCAACCACCG+AGG | + | chr5.4:44464308-44464327 | MS.gene057056:CDS | 60.0% | |
| GGCCTCGGTGGTTGCTTCTT+CGG | - | chr5.4:44464313-44464332 | None:intergenic | 60.0% | |
| GGTTGCTTCTTCGGCTTCGC+AGG | - | chr5.4:44464304-44464323 | None:intergenic | 60.0% | |
| TCTTCGGCTTCGCAGGCCTA+AGG | - | chr5.4:44464297-44464316 | None:intergenic | 60.0% | |
| AGGGCAATGGACGGCCTCGG+TGG | - | chr5.4:44464325-44464344 | None:intergenic | 70.0% | |
| CCGAGGCCGTCCATTGCCCT+CGG | + | chr5.4:44464325-44464344 | MS.gene057056:CDS | 70.0% | |
| CCGAGGGCAATGGACGGCCT+CGG | - | chr5.4:44464328-44464347 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 44464254 | 44465971 | 44464254 | ID=MS.gene057056 |
| chr5.4 | mRNA | 44464254 | 44465971 | 44464254 | ID=MS.gene057056.t1;Parent=MS.gene057056 |
| chr5.4 | exon | 44464254 | 44464423 | 44464254 | ID=MS.gene057056.t1.exon1;Parent=MS.gene057056.t1 |
| chr5.4 | CDS | 44464254 | 44464423 | 44464254 | ID=cds.MS.gene057056.t1;Parent=MS.gene057056.t1 |
| chr5.4 | exon | 44464540 | 44464662 | 44464540 | ID=MS.gene057056.t1.exon2;Parent=MS.gene057056.t1 |
| chr5.4 | CDS | 44464540 | 44464662 | 44464540 | ID=cds.MS.gene057056.t1;Parent=MS.gene057056.t1 |
| chr5.4 | exon | 44465086 | 44465304 | 44465086 | ID=MS.gene057056.t1.exon3;Parent=MS.gene057056.t1 |
| chr5.4 | CDS | 44465086 | 44465304 | 44465086 | ID=cds.MS.gene057056.t1;Parent=MS.gene057056.t1 |
| chr5.4 | exon | 44465522 | 44465971 | 44465522 | ID=MS.gene057056.t1.exon4;Parent=MS.gene057056.t1 |
| chr5.4 | CDS | 44465522 | 44465971 | 44465522 | ID=cds.MS.gene057056.t1;Parent=MS.gene057056.t1 |
| Gene Sequence |
| Protein sequence |
