Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057055.t1 | XP_003617748.1 | 84 | 313 | 40 | 1 | 7 | 309 | 1 | 313 | 1.60E-101 | 379.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057055.t1 | B7FNC6 | 84.0 | 313 | 40 | 1 | 7 | 309 | 1 | 313 | 1.1e-101 | 379.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051452 | MS.gene057055 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene052434 | MS.gene057055 | 0.802633 | 5.11E-49 | -1.69E-46 |
| MS.gene05344 | MS.gene057055 | -0.803828 | 2.89E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene057056 | 0.896558 | 3.29E-76 | -1.69E-46 |
| MS.gene057055 | MS.gene059360 | 0.804185 | 2.44E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene059830 | 0.813157 | 2.95E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene060870 | 0.804143 | 2.49E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene061958 | 0.824323 | 8.59E-54 | -1.69E-46 |
| MS.gene057055 | MS.gene062117 | 0.808122 | 3.62E-50 | -1.69E-46 |
| MS.gene057055 | MS.gene062292 | 0.81817 | 2.25E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene063636 | 0.860971 | 1.42E-63 | -1.69E-46 |
| MS.gene057055 | MS.gene065504 | 0.813472 | 2.52E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene066427 | 0.804827 | 1.79E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene067857 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene068752 | 0.816866 | 4.43E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene069225 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene057055 | MS.gene08202 | 0.812575 | 3.96E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene23464 | 0.803591 | 3.24E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene23513 | 0.803483 | 3.41E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene26584 | 0.810293 | 1.24E-50 | -1.69E-46 |
| MS.gene057055 | MS.gene29000 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene057055 | MS.gene30010 | 0.813248 | 2.82E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene35799 | 0.817626 | 2.99E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene35930 | 0.816596 | 5.10E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene47995 | 0.805426 | 1.34E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene49486 | 0.812289 | 4.57E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene49816 | 0.802371 | 5.79E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene51814 | 0.801238 | 9.90E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene56447 | 0.816919 | 4.31E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene56570 | 0.806131 | 9.54E-50 | -1.69E-46 |
| MS.gene057055 | MS.gene60374 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene057055 | MS.gene61682 | 0.819102 | 1.39E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene63903 | 0.879248 | 1.45E-69 | -1.69E-46 |
| MS.gene057055 | MS.gene63904 | 0.829007 | 6.55E-55 | -1.69E-46 |
| MS.gene057055 | MS.gene66049 | 0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene66477 | 0.81313 | 2.99E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene74237 | 0.812875 | 3.40E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene76046 | 0.826303 | 2.92E-54 | -1.69E-46 |
| MS.gene057055 | MS.gene77208 | 0.811118 | 8.21E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene78166 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene78230 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene81285 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene81360 | 0.800122 | 1.67E-48 | -1.69E-46 |
| MS.gene057055 | MS.gene81715 | 0.807738 | 4.37E-50 | -1.69E-46 |
| MS.gene057055 | MS.gene86315 | 0.805937 | 1.05E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene90119 | 0.814024 | 1.90E-51 | -1.69E-46 |
| MS.gene057055 | MS.gene90882 | 0.815413 | 9.36E-52 | -1.69E-46 |
| MS.gene057055 | MS.gene91525 | 0.807252 | 5.53E-50 | -1.69E-46 |
| MS.gene057055 | MS.gene93288 | -0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene95208 | 0.834205 | 3.43E-56 | -1.69E-46 |
| MS.gene057055 | MS.gene97638 | 0.803738 | 3.02E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene99533 | 0.802579 | 5.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATCTTTGCTTCTCTCCT+TGG | 0.304596 | 5.4:+44467019 | None:intergenic |
| TCTGCAGAAGCATCGGGATT+TGG | 0.314331 | 5.4:+44466362 | None:intergenic |
| TGCTGCTGATTTGATGCATC+AGG | 0.317421 | 5.4:+44466521 | None:intergenic |
| CTCATTCCCTCACGTTTCTC+TGG | 0.342667 | 5.4:+44466545 | None:intergenic |
| GGCCTCGGTGGTTGCTTCTT+CGG | 0.365460 | 5.4:+44467875 | None:intergenic |
| TGTAACATATTTGTCTTTGT+CGG | 0.367853 | 5.4:+44466986 | None:intergenic |
| GAAGCTGGTGGCTTCTCAAC+TGG | 0.367854 | 5.4:+44466329 | None:intergenic |
| CCGCTTCAAATGAACAAGTA+TGG | 0.396751 | 5.4:-44467920 | MS.gene057055:CDS |
| GACTCCGTCATAATCAAATA+TGG | 0.404782 | 5.4:+44467605 | None:intergenic |
| GGTTGCTTCTTCGGCTTCGC+AGG | 0.425435 | 5.4:+44467884 | None:intergenic |
| ACAAGTATGGCTTGAACCTT+AGG | 0.429919 | 5.4:-44467907 | MS.gene057055:CDS |
| TTTCTCTGGAACTCTATTCT+CGG | 0.444819 | 5.4:+44466559 | None:intergenic |
| TCAGGATTTGGTTGTGAAGC+TGG | 0.459984 | 5.4:+44466314 | None:intergenic |
| AGGGGAGAAAACGTGACAAT+CGG | 0.466476 | 5.4:-44466583 | MS.gene057055:CDS |
| TCTTCGGCTTCGCAGGCCTA+AGG | 0.474287 | 5.4:+44467891 | None:intergenic |
| CCGAGGGCAATGGACGGCCT+CGG | 0.490294 | 5.4:+44467860 | None:intergenic |
| TTCATTAAAGCCGAGGGCAA+TGG | 0.490951 | 5.4:+44467850 | None:intergenic |
| AGTTCACCAGAAGAGTCTCC+AGG | 0.503593 | 5.4:-44466455 | MS.gene057055:CDS |
| GGGGAGAAAACGTGACAATC+GGG | 0.504890 | 5.4:-44466582 | MS.gene057055:CDS |
| TCTTCGCGATCTTGTATCAA+TGG | 0.506015 | 5.4:+44467552 | None:intergenic |
| TAATAGAAGTGCCAGTCCCT+TGG | 0.509927 | 5.4:-44466393 | MS.gene057055:CDS |
| ACAAGATCGCGAAGAGAGAA+AGG | 0.511139 | 5.4:-44467544 | MS.gene057055:intron |
| CCATACTTGTTCATTTGAAG+CGG | 0.523653 | 5.4:+44467920 | None:intergenic |
| ACGTATACGCGAACTTCAAG+AGG | 0.525424 | 5.4:-44466913 | MS.gene057055:CDS |
| GGAGCAGCAAAGAAAAGCCT+TGG | 0.526026 | 5.4:-44467640 | MS.gene057055:CDS |
| TGATGCATCAAATCAGCAGC+AGG | 0.545607 | 5.4:-44466519 | MS.gene057055:CDS |
| TGCATAGGTTACGAAGAAGA+AGG | 0.547399 | 5.4:-44466669 | MS.gene057055:intron |
| TGGCTTCATAGCCAAGGGAC+TGG | 0.560491 | 5.4:+44466382 | None:intergenic |
| CATCATCTTCATTAAAGCCG+AGG | 0.561447 | 5.4:+44467843 | None:intergenic |
| ATCATCTTCATTAAAGCCGA+GGG | 0.562099 | 5.4:+44467844 | None:intergenic |
| GGATTTGGTTGTGAAGCTGG+TGG | 0.565744 | 5.4:+44466317 | None:intergenic |
| CCGAGGCCGTCCATTGCCCT+CGG | 0.571438 | 5.4:-44467860 | MS.gene057055:CDS |
| GGGATTTGGCTTCATAGCCA+AGG | 0.575475 | 5.4:+44466376 | None:intergenic |
| TAGCAAGAGTAAAAGTCTCA+AGG | 0.575504 | 5.4:-44467786 | MS.gene057055:CDS |
| GCTGCTGATTTGATGCATCA+GGG | 0.575527 | 5.4:+44466522 | None:intergenic |
| GGATTTGGCTTCATAGCCAA+GGG | 0.576616 | 5.4:+44466377 | None:intergenic |
| TATGGTCGGATCTTCTTCCA+AGG | 0.578834 | 5.4:+44467623 | None:intergenic |
| AGGGCAATGGACGGCCTCGG+TGG | 0.589223 | 5.4:+44467863 | None:intergenic |
| CCGACCATATTTGATTATGA+CGG | 0.590424 | 5.4:-44467609 | MS.gene057055:CDS |
| AGATGAAGAGCAACATTCGT+TGG | 0.592495 | 5.4:-44466486 | MS.gene057055:CDS |
| TTTGGTGCAAAAGATGCTCA+GGG | 0.602366 | 5.4:-44466602 | MS.gene057055:CDS |
| CAAAAGAAGTCAAGATGCTG+TGG | 0.604246 | 5.4:-44466285 | MS.gene057055:CDS |
| ATTTGTCTTTGTCGGCAAAG+AGG | 0.614244 | 5.4:+44466994 | None:intergenic |
| CCGTCATAATCAAATATGGT+CGG | 0.619416 | 5.4:+44467609 | None:intergenic |
| CGAACTTCAAGAGGAAAGAG+AGG | 0.624167 | 5.4:-44466904 | MS.gene057055:CDS |
| TGCTGAACGAGAGAAACAGA+TGG | 0.626499 | 5.4:-44466943 | MS.gene057055:CDS |
| TAGAGTTCCAGAGAAACGTG+AGG | 0.630094 | 5.4:-44466552 | MS.gene057055:CDS |
| AAATCCCGATGCTTCTGCAG+AGG | 0.635355 | 5.4:-44466360 | MS.gene057055:CDS |
| GCATCAAATCAGCAGCAGGA+TGG | 0.636667 | 5.4:-44466515 | MS.gene057055:CDS |
| GTTCACCAGAAGAGTCTCCA+GGG | 0.644434 | 5.4:-44466454 | MS.gene057055:CDS |
| AGAGTTCCAGAGAAACGTGA+GGG | 0.653129 | 5.4:-44466551 | MS.gene057055:CDS |
| TTAAAGCCGAGGGCAATGGA+CGG | 0.661471 | 5.4:+44467854 | None:intergenic |
| AGCCGAAGAAGCAACCACCG+AGG | 0.687950 | 5.4:-44467877 | MS.gene057055:CDS |
| TTGGTGCAAAAGATGCTCAG+GGG | 0.730452 | 5.4:-44466601 | MS.gene057055:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAACCAAA+TGG | + | chr5.4:44466483-44466502 | None:intergenic | 10.0% |
| !! | AACAAATTAAACAAAATTAT+TGG | + | chr5.4:44466948-44466967 | None:intergenic | 10.0% |
| !! | ATTAAACAAAATTATTGGAA+AGG | + | chr5.4:44466943-44466962 | None:intergenic | 15.0% |
| !!! | ATTTAAAATAGTGTTTTCAT+TGG | - | chr5.4:44466867-44466886 | MS.gene057055:intron | 15.0% |
| !!! | GATTTTCATGTATTTTAAAA+TGG | - | chr5.4:44467358-44467377 | MS.gene057055:intron | 15.0% |
| !!! | GTTTTTTATTTTACTTTCTT+GGG | - | chr5.4:44466965-44466984 | MS.gene057055:CDS | 15.0% |
| !!! | TGTTTTTTATTTTACTTTCT+TGG | - | chr5.4:44466964-44466983 | MS.gene057055:CDS | 15.0% |
| !!! | TTGTTTTTAATTATTTGCAT+AGG | - | chr5.4:44467482-44467501 | MS.gene057055:intron | 15.0% |
| !!! | TTTTAAAATACATGAAAATC+AGG | + | chr5.4:44467358-44467377 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTACTTTCTTG+GGG | - | chr5.4:44466966-44466985 | MS.gene057055:CDS | 15.0% |
| !! | AAATTAACTGAAAAAGTTGA+GGG | + | chr5.4:44467406-44467425 | None:intergenic | 20.0% |
| !! | AATGAATTACTGAAAAAAAC+AGG | + | chr5.4:44467297-44467316 | None:intergenic | 20.0% |
| !! | ATGTCAGTAATTCAAAATAT+AGG | + | chr5.4:44467459-44467478 | None:intergenic | 20.0% |
| !! | CTCATAATTATGATGAAATT+TGG | + | chr5.4:44466744-44466763 | None:intergenic | 20.0% |
| !! | GTAATTCAAAATATAGGTAT+AGG | + | chr5.4:44467453-44467472 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTACTTTCTTGG+GGG | - | chr5.4:44466967-44466986 | MS.gene057055:CDS | 20.0% |
| !!! | TTTTTTCTTTCCCTTATTTA+AGG | - | chr5.4:44466499-44466518 | MS.gene057055:CDS | 20.0% |
| ! | ATATTCACATACTTACATGA+TGG | - | chr5.4:44466790-44466809 | MS.gene057055:intron | 25.0% |
| ! | CAAATTAACTGAAAAAGTTG+AGG | + | chr5.4:44467407-44467426 | None:intergenic | 25.0% |
| ! | TAATTTGGTATGCTTGTTTA+TGG | - | chr5.4:44467420-44467439 | MS.gene057055:intron | 25.0% |
| ! | TGTAACATATTTGTCTTTGT+CGG | + | chr5.4:44467183-44467202 | None:intergenic | 25.0% |
| ! | TTATGATCTAACTTTCCATT+TGG | - | chr5.4:44466465-44466484 | MS.gene057055:CDS | 25.0% |
| !! | CAAAAGCAACATTTTTATCA+AGG | + | chr5.4:44467548-44467567 | None:intergenic | 25.0% |
| !!! | ATCAGGTTTTGGATATATTT+TGG | + | chr5.4:44467070-44467089 | None:intergenic | 25.0% |
| !!! | CTCAACTTTTTCAGTTAATT+TGG | - | chr5.4:44467405-44467424 | MS.gene057055:intron | 25.0% |
| !!! | CTTGATAAAAATGTTGCTTT+TGG | - | chr5.4:44467546-44467565 | MS.gene057055:CDS | 25.0% |
| !!! | GTAAACCTTACATTTTAATC+TGG | - | chr5.4:44466409-44466428 | MS.gene057055:CDS | 25.0% |
| !!! | TGTGTTCATTTTGGTTAATT+TGG | - | chr5.4:44467002-44467021 | MS.gene057055:CDS | 25.0% |
| ATATGAGAAAAAGATTGCCA+AGG | - | chr5.4:44467130-44467149 | MS.gene057055:intron | 30.0% | |
| TATGCACTTTCATATTGCAA+AGG | + | chr5.4:44466773-44466792 | None:intergenic | 30.0% | |
| TGAAAAAGAAATTGCTATCC+AGG | - | chr5.4:44466356-44466375 | MS.gene057055:CDS | 30.0% | |
| ! | AAGATACAGTCAATTTTCCT+AGG | + | chr5.4:44466818-44466837 | None:intergenic | 30.0% |
| ! | ATGCTGAAATGTGTTCATTT+TGG | - | chr5.4:44466993-44467012 | MS.gene057055:CDS | 30.0% |
| !! | AACCTTACATTTTAATCTGG+TGG | - | chr5.4:44466412-44466431 | MS.gene057055:CDS | 30.0% |
| !!! | TGTTTTCATTGGTTTAGAGA+AGG | - | chr5.4:44466878-44466897 | MS.gene057055:intron | 30.0% |
| AAAAGTTGAGGGAGAAAGAA+AGG | + | chr5.4:44467395-44467414 | None:intergenic | 35.0% | |
| AGCCACCAGATTAAAATGTA+AGG | + | chr5.4:44466417-44466436 | None:intergenic | 35.0% | |
| AGCTCAGTAGAGAATCATAA+CGG | - | chr5.4:44466708-44466727 | MS.gene057055:intron | 35.0% | |
| ATCATCTTCATTAAAGCCGA+GGG | + | chr5.4:44466325-44466344 | None:intergenic | 35.0% | |
| CCATACTTGTTCATTTGAAG+CGG | + | chr5.4:44466249-44466268 | None:intergenic | 35.0% | |
| CCGACCATATTTGATTATGA+CGG | - | chr5.4:44466557-44466576 | MS.gene057055:CDS | 35.0% | |
| CCGTCATAATCAAATATGGT+CGG | + | chr5.4:44466560-44466579 | None:intergenic | 35.0% | |
| GACTCCGTCATAATCAAATA+TGG | + | chr5.4:44466564-44466583 | None:intergenic | 35.0% | |
| TAGCAAGAGTAAAAGTCTCA+AGG | - | chr5.4:44466380-44466399 | MS.gene057055:CDS | 35.0% | |
| TGCTCCTCAACCTTAAATAA+GGG | + | chr5.4:44466512-44466531 | None:intergenic | 35.0% | |
| ! | CTTTCCCTTATTTAAGGTTG+AGG | - | chr5.4:44466505-44466524 | MS.gene057055:CDS | 35.0% |
| ! | TTGCTTTCTGAATCAGGTTT+TGG | + | chr5.4:44467081-44467100 | None:intergenic | 35.0% |
| !! | ATACTTACATGATGGATCCT+AGG | - | chr5.4:44466798-44466817 | MS.gene057055:intron | 35.0% |
| !! | TTTCTCTGGAACTCTATTCT+CGG | + | chr5.4:44467610-44467629 | None:intergenic | 35.0% |
| ACAAGTATGGCTTGAACCTT+AGG | - | chr5.4:44466259-44466278 | MS.gene057055:CDS | 40.0% | |
| AGATGAAGAGCAACATTCGT+TGG | - | chr5.4:44467680-44467699 | MS.gene057055:intron | 40.0% | |
| ATCATCTTTGCTTCTCTCCT+TGG | + | chr5.4:44467150-44467169 | None:intergenic | 40.0% | |
| ATTTGTCTTTGTCGGCAAAG+AGG | + | chr5.4:44467175-44467194 | None:intergenic | 40.0% | |
| CAAAAGAAGTCAAGATGCTG+TGG | - | chr5.4:44467881-44467900 | MS.gene057055:CDS | 40.0% | |
| CATCATCTTCATTAAAGCCG+AGG | + | chr5.4:44466326-44466345 | None:intergenic | 40.0% | |
| CCGCTTCAAATGAACAAGTA+TGG | - | chr5.4:44466246-44466265 | MS.gene057055:CDS | 40.0% | |
| CTGCTCCTCAACCTTAAATA+AGG | + | chr5.4:44466513-44466532 | None:intergenic | 40.0% | |
| TCTTCGCGATCTTGTATCAA+TGG | + | chr5.4:44466617-44466636 | None:intergenic | 40.0% | |
| TGCATAGGTTACGAAGAAGA+AGG | - | chr5.4:44467497-44467516 | MS.gene057055:intron | 40.0% | |
| ! | AGGGAAAAAGATTGGTGATC+AGG | - | chr5.4:44467731-44467750 | MS.gene057055:intron | 40.0% |
| ! | CTTTTGTGATGCTCAGGATT+TGG | + | chr5.4:44467867-44467886 | None:intergenic | 40.0% |
| ! | GCTCTTTTGCTTTCTGAATC+AGG | + | chr5.4:44467087-44467106 | None:intergenic | 40.0% |
| ! | GGGAAAAAGATTGGTGATCA+GGG | - | chr5.4:44467732-44467751 | MS.gene057055:intron | 40.0% |
| ! | TGACTTCTTTTGTGATGCTC+AGG | + | chr5.4:44467873-44467892 | None:intergenic | 40.0% |
| ! | TGATCACCAATCTTTTTCCC+TGG | + | chr5.4:44467732-44467751 | None:intergenic | 40.0% |
| ! | TGCAGCAAAAGAACGTTTTC+TGG | - | chr5.4:44467905-44467924 | MS.gene057055:CDS | 40.0% |
| ! | TTTGGTGCAAAAGATGCTCA+GGG | - | chr5.4:44467564-44467583 | MS.gene057055:CDS | 40.0% |
| !! | TTTTGGTGCAAAAGATGCTC+AGG | - | chr5.4:44467563-44467582 | MS.gene057055:CDS | 40.0% |
| ACAAGATCGCGAAGAGAGAA+AGG | - | chr5.4:44466622-44466641 | MS.gene057055:CDS | 45.0% | |
| ACGTATACGCGAACTTCAAG+AGG | - | chr5.4:44467253-44467272 | MS.gene057055:intron | 45.0% | |
| AGAGTTCCAGAGAAACGTGA+GGG | - | chr5.4:44467615-44467634 | MS.gene057055:CDS | 45.0% | |
| AGGGGAGAAAACGTGACAAT+CGG | - | chr5.4:44467583-44467602 | MS.gene057055:CDS | 45.0% | |
| ATCGCGAAGAGAGAAAGGTA+TGG | - | chr5.4:44466627-44466646 | MS.gene057055:CDS | 45.0% | |
| CGAACTTCAAGAGGAAAGAG+AGG | - | chr5.4:44467262-44467281 | MS.gene057055:intron | 45.0% | |
| GAGTCTCCAGGGAAAAAGAT+TGG | - | chr5.4:44467723-44467742 | MS.gene057055:intron | 45.0% | |
| TAGAGTTCCAGAGAAACGTG+AGG | - | chr5.4:44467614-44467633 | MS.gene057055:CDS | 45.0% | |
| TATGGTCGGATCTTCTTCCA+AGG | + | chr5.4:44466546-44466565 | None:intergenic | 45.0% | |
| TGATGCATCAAATCAGCAGC+AGG | - | chr5.4:44467647-44467666 | MS.gene057055:CDS | 45.0% | |
| TGCTGAACGAGAGAAACAGA+TGG | - | chr5.4:44467223-44467242 | MS.gene057055:intron | 45.0% | |
| TTCATTAAAGCCGAGGGCAA+TGG | + | chr5.4:44466319-44466338 | None:intergenic | 45.0% | |
| TTGGTGCAAAAGATGCTCAG+GGG | - | chr5.4:44467565-44467584 | MS.gene057055:CDS | 45.0% | |
| ! | GACTTTTACTCTTGCTAGCC+TGG | + | chr5.4:44466377-44466396 | None:intergenic | 45.0% |
| ! | GGATTTGGCTTCATAGCCAA+GGG | + | chr5.4:44467792-44467811 | None:intergenic | 45.0% |
| ! | TCAGGATTTGGTTGTGAAGC+TGG | + | chr5.4:44467855-44467874 | None:intergenic | 45.0% |
| ! | TTTTTCCCTGGAGACTCTTC+TGG | + | chr5.4:44467720-44467739 | None:intergenic | 45.0% |
| !! | CTTTTCCTCTGCAGAAGCAT+CGG | + | chr5.4:44467814-44467833 | None:intergenic | 45.0% |
| !! | GCTGCTGATTTGATGCATCA+GGG | + | chr5.4:44467647-44467666 | None:intergenic | 45.0% |
| !! | TAATAGAAGTGCCAGTCCCT+TGG | - | chr5.4:44467773-44467792 | MS.gene057055:intron | 45.0% |
| !! | TGCTGCTGATTTGATGCATC+AGG | + | chr5.4:44467648-44467667 | None:intergenic | 45.0% |
| !!! | TTTTCCTCTGCAGAAGCATC+GGG | + | chr5.4:44467813-44467832 | None:intergenic | 45.0% |
| AAATCCCGATGCTTCTGCAG+AGG | - | chr5.4:44467806-44467825 | MS.gene057055:CDS | 50.0% | |
| AGTTCACCAGAAGAGTCTCC+AGG | - | chr5.4:44467711-44467730 | MS.gene057055:intron | 50.0% | |
| CTCATTCCCTCACGTTTCTC+TGG | + | chr5.4:44467624-44467643 | None:intergenic | 50.0% | |
| GCATCAAATCAGCAGCAGGA+TGG | - | chr5.4:44467651-44467670 | MS.gene057055:intron | 50.0% | |
| GGAGCAGCAAAGAAAAGCCT+TGG | - | chr5.4:44466526-44466545 | MS.gene057055:CDS | 50.0% | |
| GGGGAGAAAACGTGACAATC+GGG | - | chr5.4:44467584-44467603 | MS.gene057055:CDS | 50.0% | |
| GTTCACCAGAAGAGTCTCCA+GGG | - | chr5.4:44467712-44467731 | MS.gene057055:intron | 50.0% | |
| TTAAAGCCGAGGGCAATGGA+CGG | + | chr5.4:44466315-44466334 | None:intergenic | 50.0% | |
| ! | GGATTTGGTTGTGAAGCTGG+TGG | + | chr5.4:44467852-44467871 | None:intergenic | 50.0% |
| ! | GGGATTTGGCTTCATAGCCA+AGG | + | chr5.4:44467793-44467812 | None:intergenic | 50.0% |
| !! | TCTGCAGAAGCATCGGGATT+TGG | + | chr5.4:44467807-44467826 | None:intergenic | 50.0% |
| GAAGCTGGTGGCTTCTCAAC+TGG | + | chr5.4:44467840-44467859 | None:intergenic | 55.0% | |
| TGGCTTCATAGCCAAGGGAC+TGG | + | chr5.4:44467787-44467806 | None:intergenic | 55.0% | |
| AGCCGAAGAAGCAACCACCG+AGG | - | chr5.4:44466289-44466308 | MS.gene057055:CDS | 60.0% | |
| GGCCTCGGTGGTTGCTTCTT+CGG | + | chr5.4:44466294-44466313 | None:intergenic | 60.0% | |
| GGTTGCTTCTTCGGCTTCGC+AGG | + | chr5.4:44466285-44466304 | None:intergenic | 60.0% | |
| TCTTCGGCTTCGCAGGCCTA+AGG | + | chr5.4:44466278-44466297 | None:intergenic | 60.0% | |
| AGGGCAATGGACGGCCTCGG+TGG | + | chr5.4:44466306-44466325 | None:intergenic | 70.0% | |
| CCGAGGCCGTCCATTGCCCT+CGG | - | chr5.4:44466306-44466325 | MS.gene057055:CDS | 70.0% | |
| CCGAGGGCAATGGACGGCCT+CGG | + | chr5.4:44466309-44466328 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 44466235 | 44467953 | 44466235 | ID=MS.gene057055 |
| chr5.4 | mRNA | 44466235 | 44467953 | 44466235 | ID=MS.gene057055.t1;Parent=MS.gene057055 |
| chr5.4 | exon | 44467784 | 44467953 | 44467784 | ID=MS.gene057055.t1.exon1;Parent=MS.gene057055.t1 |
| chr5.4 | CDS | 44467784 | 44467953 | 44467784 | ID=cds.MS.gene057055.t1;Parent=MS.gene057055.t1 |
| chr5.4 | exon | 44467545 | 44467667 | 44467545 | ID=MS.gene057055.t1.exon2;Parent=MS.gene057055.t1 |
| chr5.4 | CDS | 44467545 | 44467667 | 44467545 | ID=cds.MS.gene057055.t1;Parent=MS.gene057055.t1 |
| chr5.4 | exon | 44466902 | 44467090 | 44466902 | ID=MS.gene057055.t1.exon3;Parent=MS.gene057055.t1 |
| chr5.4 | CDS | 44466902 | 44467090 | 44466902 | ID=cds.MS.gene057055.t1;Parent=MS.gene057055.t1 |
| chr5.4 | exon | 44466235 | 44466684 | 44466235 | ID=MS.gene057055.t1.exon4;Parent=MS.gene057055.t1 |
| chr5.4 | CDS | 44466235 | 44466684 | 44466235 | ID=cds.MS.gene057055.t1;Parent=MS.gene057055.t1 |
| Gene Sequence |
| Protein sequence |
