Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05720.t1 | XP_003594786.1 | 93.6 | 250 | 16 | 0 | 1 | 250 | 1 | 250 | 5.90E-131 | 476.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05720.t1 | Q9H2J4 | 34.8 | 230 | 146 | 3 | 16 | 241 | 8 | 237 | 3.8e-30 | 133.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05720.t1 | G7IMU2 | 93.6 | 250 | 16 | 0 | 1 | 250 | 1 | 250 | 4.2e-131 | 476.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064894 | MS.gene05720 | PPI |
| MS.gene05720 | MS.gene063165 | PPI |
| MS.gene05720 | MS.gene014281 | PPI |
| MS.gene05720 | MS.gene68222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05720.t1 | MTR_2g034610 | 94.000 | 250 | 15 | 0 | 1 | 250 | 1 | 250 | 5.24e-165 | 456 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05720.t1 | AT5G14240 | 68.273 | 249 | 76 | 2 | 1 | 246 | 1 | 249 | 1.40e-119 | 342 |
Find 76 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGGCTCCATCTGATGTT+TGG | 0.202155 | 3.2:+52105681 | MS.gene05720:CDS |
| GGATCAGTGACTCCCATTTC+AGG | 0.234742 | 3.2:+52105635 | MS.gene05720:CDS |
| TTCAAGTTCATCATGGGTTT+TGG | 0.269860 | 3.2:-52104847 | None:intergenic |
| GGTTTGAAAGCGGGTGGTTT+AGG | 0.279660 | 3.2:-52104762 | None:intergenic |
| AATGCAATGCATTGAAGAAT+TGG | 0.297708 | 3.2:+52105836 | MS.gene05720:CDS |
| TATGTTGGTATGACTAGGTT+TGG | 0.325174 | 3.2:+52105978 | MS.gene05720:CDS |
| TGCAACAATGGAGCTGTTAA+AGG | 0.346391 | 3.2:+52105951 | MS.gene05720:CDS |
| GCAGGCTCCATCTGATGTTT+GGG | 0.354810 | 3.2:+52105682 | MS.gene05720:CDS |
| ACTGATCCATGATATGTCTT+TGG | 0.361889 | 3.2:-52104823 | None:intergenic |
| AGGAGGAAGATTGCCGAGTT+TGG | 0.379133 | 3.2:-52104742 | None:intergenic |
| TTCATATACAAAGATTTAGA+AGG | 0.380474 | 3.2:+52104690 | MS.gene05720:CDS |
| ATGTTGGTATGACTAGGTTT+GGG | 0.398364 | 3.2:+52105979 | MS.gene05720:CDS |
| GAAGAGGTTAGCTGAGATAC+AGG | 0.399888 | 3.2:+52105589 | MS.gene05720:CDS |
| CTGATCCATGATATGTCTTT+GGG | 0.406150 | 3.2:-52104822 | None:intergenic |
| TATGTCTTTGGGAATGGAAT+CGG | 0.413553 | 3.2:-52104811 | None:intergenic |
| TTGTAATCTTCCTACTTTGT+TGG | 0.414641 | 3.2:+52105926 | MS.gene05720:CDS |
| AAAGGTGGTGGTTTGAAAGC+GGG | 0.425666 | 3.2:-52104771 | None:intergenic |
| CAAGGTCTTCAAGTTCATCA+TGG | 0.429450 | 3.2:-52104854 | None:intergenic |
| TCAAGACAAGCCGTCATTGA+TGG | 0.436184 | 3.2:+52106646 | MS.gene05720:CDS |
| AAGATTACAATCCGGGTAGT+TGG | 0.446274 | 3.2:-52105913 | None:intergenic |
| TACGAAATCAGATCCTGAAA+TGG | 0.446543 | 3.2:-52105648 | None:intergenic |
| TTGATTCCTCGTCTCTGCTC+TGG | 0.446620 | 3.2:-52106627 | None:intergenic |
| CATCATCAAGATCATCTTCA+AGG | 0.452034 | 3.2:-52104872 | None:intergenic |
| TGTAACATTAGGTGTTGCCT+TGG | 0.459416 | 3.2:+52106570 | MS.gene05720:intron |
| AGATTACAATCCGGGTAGTT+GGG | 0.464995 | 3.2:-52105912 | None:intergenic |
| CCATTCCCAAAGACATATCA+TGG | 0.468492 | 3.2:+52104817 | MS.gene05720:CDS |
| AGTCGTCATCATGCTCTTCA+TGG | 0.478951 | 3.2:-52106705 | None:intergenic |
| ATGTCTTTGGGAATGGAATC+GGG | 0.479113 | 3.2:-52104810 | None:intergenic |
| ATCGCTTCCTCCAACAATAC+AGG | 0.489974 | 3.2:+52104895 | MS.gene05720:CDS |
| GCTGTTAAAGGAAATTATGT+TGG | 0.493044 | 3.2:+52105963 | MS.gene05720:CDS |
| TCAATGGAAGGGGAGAAAGG+TGG | 0.493474 | 3.2:-52104786 | None:intergenic |
| TTGTCATTCTTTACAAAGAC+GGG | 0.494839 | 3.2:+52105708 | MS.gene05720:CDS |
| ATGTTGAGTACCTGTATTGT+TGG | 0.503376 | 3.2:-52104905 | None:intergenic |
| GGGAATGGAATCGGGATCAA+TGG | 0.503524 | 3.2:-52104802 | None:intergenic |
| ACGAAATCAGATCCTGAAAT+GGG | 0.509016 | 3.2:-52105647 | None:intergenic |
| CCATGATATGTCTTTGGGAA+TGG | 0.509087 | 3.2:-52104817 | None:intergenic |
| CTCTGGCCATCATTAAGTAC+AGG | 0.512172 | 3.2:-52106610 | None:intergenic |
| AAGGTCTTCAAGTTCATCAT+GGG | 0.513562 | 3.2:-52104853 | None:intergenic |
| AAAGTAGGAAGATTACAATC+CGG | 0.518629 | 3.2:-52105921 | None:intergenic |
| GGATCAATGGAAGGGGAGAA+AGG | 0.520244 | 3.2:-52104789 | None:intergenic |
| ATGGAAGGGGAGAAAGGTGG+TGG | 0.521086 | 3.2:-52104783 | None:intergenic |
| AAGTAGGAAGATTACAATCC+GGG | 0.522922 | 3.2:-52105920 | None:intergenic |
| GAAAGGTGGTGGTTTGAAAG+CGG | 0.524265 | 3.2:-52104772 | None:intergenic |
| TTGAAAGCGGGTGGTTTAGG+AGG | 0.525651 | 3.2:-52104759 | None:intergenic |
| TCAGATCCTGTACTTAATGA+TGG | 0.527646 | 3.2:+52106604 | MS.gene05720:CDS |
| CATTAAGTACAGGATCTGAT+TGG | 0.532522 | 3.2:-52106600 | None:intergenic |
| ATGGAATCGGGATCAATGGA+AGG | 0.534792 | 3.2:-52104798 | None:intergenic |
| TTAATAGGATTGCTGAATGT+GGG | 0.544779 | 3.2:+52105808 | MS.gene05720:intron |
| TTTAATAGGATTGCTGAATG+TGG | 0.550396 | 3.2:+52105807 | MS.gene05720:intron |
| AATATCGTCCCACTGAGTTG+TGG | 0.560403 | 3.2:-52104715 | None:intergenic |
| GTTGTCATTCTTTACAAAGA+CGG | 0.567372 | 3.2:+52105707 | MS.gene05720:CDS |
| TGATTGTATTCCCAACTACC+CGG | 0.568143 | 3.2:+52105902 | MS.gene05720:CDS |
| ACTTTGTTGGTGTGCAACAA+TGG | 0.569553 | 3.2:+52105939 | MS.gene05720:CDS |
| GAAATTATGTTGGTATGACT+AGG | 0.574459 | 3.2:+52105973 | MS.gene05720:CDS |
| ACAACCACCCAAACATCAGA+TGG | 0.575121 | 3.2:-52105689 | None:intergenic |
| TTGTTGCACACCAACAAAGT+AGG | 0.577417 | 3.2:-52105936 | None:intergenic |
| TAGAAGGTTCCACAACTCAG+TGG | 0.580678 | 3.2:+52104706 | MS.gene05720:CDS |
| GACGATATTCAAACCAAACT+CGG | 0.584334 | 3.2:+52104729 | MS.gene05720:CDS |
| GGGCGAAGATGTACTCCTGA+AGG | 0.592252 | 3.2:+52105999 | MS.gene05720:CDS |
| AGGATCTGATTTCGTACGAG+AGG | 0.594647 | 3.2:+52105655 | MS.gene05720:CDS |
| GGTGGTGGTTTGAAAGCGGG+TGG | 0.598084 | 3.2:-52104768 | None:intergenic |
| TTGAGTACCTGTATTGTTGG+AGG | 0.598827 | 3.2:-52104902 | None:intergenic |
| AGAAGGTTCCACAACTCAGT+GGG | 0.601724 | 3.2:+52104707 | MS.gene05720:CDS |
| TTTGCTATGATAGGAAGAAG+AGG | 0.602112 | 3.2:+52105573 | MS.gene05720:intron |
| GTACAGGATCTGATTGGCAC+AGG | 0.609831 | 3.2:-52106594 | None:intergenic |
| GGAATCGGGATCAATGGAAG+GGG | 0.612040 | 3.2:-52104796 | None:intergenic |
| ATCTGATTGGCACAGGACCA+AGG | 0.615196 | 3.2:-52106587 | None:intergenic |
| TGGAATCGGGATCAATGGAA+GGG | 0.621079 | 3.2:-52104797 | None:intergenic |
| CTTGCGAACTCCATCAATGA+CGG | 0.628030 | 3.2:-52106656 | None:intergenic |
| GGCTCCATCTGATGTTTGGG+TGG | 0.631437 | 3.2:+52105685 | MS.gene05720:CDS |
| TCATTGATGGAGTTCGCAAG+AGG | 0.640944 | 3.2:+52106659 | MS.gene05720:CDS |
| TTTCGTACGAGAGGTTTCGC+AGG | 0.649897 | 3.2:+52105664 | MS.gene05720:CDS |
| GTAGTTGGGAATACAATCAG+TGG | 0.658535 | 3.2:-52105898 | None:intergenic |
| TGATGGCCAGAGCAGAGACG+AGG | 0.668974 | 3.2:+52106621 | MS.gene05720:CDS |
| TAATAGGATTGCTGAATGTG+GGG | 0.672574 | 3.2:+52105809 | MS.gene05720:intron |
| GAGGTTAGCTGAGATACAGG+AGG | 0.684485 | 3.2:+52105592 | MS.gene05720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACAAGAACTTAAAA+AGG | - | chr3.2:52106474-52106493 | None:intergenic | 15.0% |
| !!! | TATTTATTTGATTTGATACA+AGG | + | chr3.2:52105103-52105122 | MS.gene05720:intron | 15.0% |
| !! | AATATACTCGGTATAAATTT+AGG | - | chr3.2:52106276-52106295 | None:intergenic | 20.0% |
| !! | ACAAAACAAGCAAATAATTA+AGG | - | chr3.2:52106553-52106572 | None:intergenic | 20.0% |
| !! | ACAATTACATGATAGAATTA+AGG | + | chr3.2:52106250-52106269 | MS.gene05720:intron | 20.0% |
| !! | CAAAACAAGCAAATAATTAA+GGG | - | chr3.2:52106552-52106571 | None:intergenic | 20.0% |
| !! | CAAACAAAAAACAATATACT+CGG | - | chr3.2:52106288-52106307 | None:intergenic | 20.0% |
| !! | TATTAAACTTAGGAAATACT+AGG | - | chr3.2:52106353-52106372 | None:intergenic | 20.0% |
| !! | TTCATATACAAAGATTTAGA+AGG | + | chr3.2:52104690-52104709 | MS.gene05720:CDS | 20.0% |
| !!! | AAATTTCCAATTTTTTCATG+TGG | + | chr3.2:52104940-52104959 | MS.gene05720:intron | 20.0% |
| !!! | AAGTTGTGATTTTTTTATGT+GGG | + | chr3.2:52104983-52105002 | MS.gene05720:intron | 20.0% |
| !!! | AATCAAAATCTAGTTTGTTT+AGG | + | chr3.2:52105080-52105099 | MS.gene05720:intron | 20.0% |
| !!! | AATTTCCAATTTTTTCATGT+GGG | + | chr3.2:52104941-52104960 | MS.gene05720:intron | 20.0% |
| !!! | TAATATTTCCTTTTCAATCA+AGG | - | chr3.2:52106171-52106190 | None:intergenic | 20.0% |
| !!! | TATGTGTTACTATTAAACTT+AGG | - | chr3.2:52106363-52106382 | None:intergenic | 20.0% |
| ! | ACAAGAACTTAAAAAGGTAA+AGG | - | chr3.2:52106468-52106487 | None:intergenic | 25.0% |
| ! | GAAAACGAATTATAATTTCG+AGG | - | chr3.2:52106230-52106249 | None:intergenic | 25.0% |
| ! | TAAGAGAATTAAATACCTTC+AGG | - | chr3.2:52106017-52106036 | None:intergenic | 25.0% |
| !! | CATGTAGATTTTGTATAGTA+AGG | + | chr3.2:52105342-52105361 | MS.gene05720:intron | 25.0% |
| !! | TTGTGTTTATAGATTTTCTC+TGG | + | chr3.2:52106305-52106324 | MS.gene05720:intron | 25.0% |
| !!! | CAAGTTGTGATTTTTTTATG+TGG | + | chr3.2:52104982-52105001 | MS.gene05720:intron | 25.0% |
| !!! | GGATTTTTTTTTTTATGCTC+TGG | + | chr3.2:52105124-52105143 | MS.gene05720:intron | 25.0% |
| !!! | TGAAGGTATTTAATTCTCTT+AGG | + | chr3.2:52106016-52106035 | MS.gene05720:intron | 25.0% |
| !!! | TTTGCTTGTTTTGTAACATT+AGG | + | chr3.2:52106559-52106578 | MS.gene05720:intron | 25.0% |
| AAAGTAGGAAGATTACAATC+CGG | - | chr3.2:52105924-52105943 | None:intergenic | 30.0% | |
| AACTTAGGAAATACTAGGAA+AGG | - | chr3.2:52106348-52106367 | None:intergenic | 30.0% | |
| AAGAAAGAAAACATGAGCAA+CGG | - | chr3.2:52106055-52106074 | None:intergenic | 30.0% | |
| AATGCAATGCATTGAAGAAT+TGG | + | chr3.2:52105836-52105855 | MS.gene05720:CDS | 30.0% | |
| ACTTAGGAAATACTAGGAAA+GGG | - | chr3.2:52106347-52106366 | None:intergenic | 30.0% | |
| AGATTTAGAGATTAACGAGT+TGG | + | chr3.2:52105445-52105464 | MS.gene05720:intron | 30.0% | |
| AGTACTTATAGCAGAAAAGA+TGG | + | chr3.2:52105278-52105297 | MS.gene05720:intron | 30.0% | |
| AGTAGTATCCTTGATTGAAA+AGG | + | chr3.2:52106160-52106179 | MS.gene05720:intron | 30.0% | |
| GAAATTATGTTGGTATGACT+AGG | + | chr3.2:52105973-52105992 | MS.gene05720:CDS | 30.0% | |
| GCACAACTTCAACTAAATAA+GGG | - | chr3.2:52106427-52106446 | None:intergenic | 30.0% | |
| GCTGTTAAAGGAAATTATGT+TGG | + | chr3.2:52105963-52105982 | MS.gene05720:CDS | 30.0% | |
| GTTGTCATTCTTTACAAAGA+CGG | + | chr3.2:52105707-52105726 | MS.gene05720:CDS | 30.0% | |
| TCATACCCACATGAAAAAAT+TGG | - | chr3.2:52104949-52104968 | None:intergenic | 30.0% | |
| TCTCTTGTGTTCTGTTTAAT+AGG | + | chr3.2:52105793-52105812 | MS.gene05720:intron | 30.0% | |
| TTAATAGGATTGCTGAATGT+GGG | + | chr3.2:52105808-52105827 | MS.gene05720:intron | 30.0% | |
| TTGTAATCTTCCTACTTTGT+TGG | + | chr3.2:52105926-52105945 | MS.gene05720:CDS | 30.0% | |
| TTGTCATTCTTTACAAAGAC+GGG | + | chr3.2:52105708-52105727 | MS.gene05720:CDS | 30.0% | |
| TTTAATAGGATTGCTGAATG+TGG | + | chr3.2:52105807-52105826 | MS.gene05720:intron | 30.0% | |
| TTTAGGTATTAGAGAGAGTT+GGG | + | chr3.2:52105253-52105272 | MS.gene05720:intron | 30.0% | |
| ! | ATACAGGTACTCAACATTTT+CGG | + | chr3.2:52104911-52104930 | MS.gene05720:intron | 30.0% |
| ! | ATCTTCACAAATTTTGTTGC+AGG | - | chr3.2:52105873-52105892 | None:intergenic | 30.0% |
| ! | ATTTGGCAATGTAGTGTTTT+AGG | + | chr3.2:52105054-52105073 | MS.gene05720:intron | 30.0% |
| ! | GTCTCTCTTATAGTTTTTCT+AGG | - | chr3.2:52105416-52105435 | None:intergenic | 30.0% |
| ! | TTTGGCAATGTAGTGTTTTA+GGG | + | chr3.2:52105055-52105074 | MS.gene05720:intron | 30.0% |
| !! | TTGAGTCATTTTGCTATGAT+AGG | + | chr3.2:52105564-52105583 | MS.gene05720:intron | 30.0% |
| !!! | ATTTTTTCATGTGGGTATGA+TGG | + | chr3.2:52104949-52104968 | MS.gene05720:intron | 30.0% |
| !!! | TATTGTGTCACTTTTTTTCC+AGG | + | chr3.2:52105018-52105037 | MS.gene05720:intron | 30.0% |
| !!! | TGGTATTTTGATTAGTGTAG+CGG | + | chr3.2:52105144-52105163 | MS.gene05720:intron | 30.0% |
| AAGTAGGAAGATTACAATCC+GGG | - | chr3.2:52105923-52105942 | None:intergenic | 35.0% | |
| ACGAAATCAGATCCTGAAAT+GGG | - | chr3.2:52105650-52105669 | None:intergenic | 35.0% | |
| ACTGATCCATGATATGTCTT+TGG | - | chr3.2:52104826-52104845 | None:intergenic | 35.0% | |
| AGAATATTGTGTTGGATGTG+TGG | + | chr3.2:52105172-52105191 | MS.gene05720:intron | 35.0% | |
| ATGTTGAGTACCTGTATTGT+TGG | - | chr3.2:52104908-52104927 | None:intergenic | 35.0% | |
| ATGTTGGTATGACTAGGTTT+GGG | + | chr3.2:52105979-52105998 | MS.gene05720:CDS | 35.0% | |
| CAAATTCAAGTGCATTAACC+TGG | - | chr3.2:52105039-52105058 | None:intergenic | 35.0% | |
| CAGGTTAATGCACTTGAATT+TGG | + | chr3.2:52105037-52105056 | MS.gene05720:intron | 35.0% | |
| CATCATCAAGATCATCTTCA+AGG | - | chr3.2:52104875-52104894 | None:intergenic | 35.0% | |
| CATTAAGTACAGGATCTGAT+TGG | - | chr3.2:52106603-52106622 | None:intergenic | 35.0% | |
| CTGATCCATGATATGTCTTT+GGG | - | chr3.2:52104825-52104844 | None:intergenic | 35.0% | |
| GACGATATTCAAACCAAACT+CGG | + | chr3.2:52104729-52104748 | MS.gene05720:CDS | 35.0% | |
| GGCACAACTTCAACTAAATA+AGG | - | chr3.2:52106428-52106447 | None:intergenic | 35.0% | |
| GTTTAGGTATTAGAGAGAGT+TGG | + | chr3.2:52105252-52105271 | MS.gene05720:intron | 35.0% | |
| TAATAGGATTGCTGAATGTG+GGG | + | chr3.2:52105809-52105828 | MS.gene05720:intron | 35.0% | |
| TACGAAATCAGATCCTGAAA+TGG | - | chr3.2:52105651-52105670 | None:intergenic | 35.0% | |
| TATGTTGGTATGACTAGGTT+TGG | + | chr3.2:52105978-52105997 | MS.gene05720:CDS | 35.0% | |
| TCAGATCCTGTACTTAATGA+TGG | + | chr3.2:52106604-52106623 | MS.gene05720:CDS | 35.0% | |
| TGGTTTCTGATAGAACGTTA+TGG | + | chr3.2:52105477-52105496 | MS.gene05720:intron | 35.0% | |
| TTAGGTATTAGAGAGAGTTG+GGG | + | chr3.2:52105254-52105273 | MS.gene05720:intron | 35.0% | |
| ! | AAGGTCTTCAAGTTCATCAT+GGG | - | chr3.2:52104856-52104875 | None:intergenic | 35.0% |
| ! | AGCATTTGATCTAGGACTAT+AGG | - | chr3.2:52106207-52106226 | None:intergenic | 35.0% |
| ! | ATGGCTTAATTTTATCCACC+TGG | + | chr3.2:52105496-52105515 | MS.gene05720:intron | 35.0% |
| ! | TAAAAAGGTAAAGGTGTGCA+AGG | - | chr3.2:52106459-52106478 | None:intergenic | 35.0% |
| ! | TAACGAGTTGGATCGAAATA+TGG | + | chr3.2:52105457-52105476 | MS.gene05720:intron | 35.0% |
| ! | TATGTCTTTGGGAATGGAAT+CGG | - | chr3.2:52104814-52104833 | None:intergenic | 35.0% |
| ! | TTTGCTATGATAGGAAGAAG+AGG | + | chr3.2:52105573-52105592 | MS.gene05720:intron | 35.0% |
| !! | TTCAAGTTCATCATGGGTTT+TGG | - | chr3.2:52104850-52104869 | None:intergenic | 35.0% |
| !!! | GGTATTTTGATTAGTGTAGC+GGG | + | chr3.2:52105145-52105164 | MS.gene05720:intron | 35.0% |
| !!! | GTATTTTGATTAGTGTAGCG+GGG | + | chr3.2:52105146-52105165 | MS.gene05720:intron | 35.0% |
| AAACTACGCTTAGGTGGTTT+GGG | + | chr3.2:52105304-52105323 | MS.gene05720:intron | 40.0% | |
| AAGATTACAATCCGGGTAGT+TGG | - | chr3.2:52105916-52105935 | None:intergenic | 40.0% | |
| ACTTTGTTGGTGTGCAACAA+TGG | + | chr3.2:52105939-52105958 | MS.gene05720:CDS | 40.0% | |
| AGATTACAATCCGGGTAGTT+GGG | - | chr3.2:52105915-52105934 | None:intergenic | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+CGG | + | chr3.2:52105358-52105377 | MS.gene05720:intron | 40.0% | |
| AGTCACATCACTAGAGCTAT+AGG | + | chr3.2:52105386-52105405 | MS.gene05720:intron | 40.0% | |
| CCATTCCCAAAGACATATCA+TGG | + | chr3.2:52104817-52104836 | MS.gene05720:CDS | 40.0% | |
| GCTTAAAGAACACTGACAAC+AGG | - | chr3.2:52106087-52106106 | None:intergenic | 40.0% | |
| GTAGTTGGGAATACAATCAG+TGG | - | chr3.2:52105901-52105920 | None:intergenic | 40.0% | |
| GTGGTGAGATTAGACGATAT+AGG | + | chr3.2:52105191-52105210 | MS.gene05720:intron | 40.0% | |
| TGATTGTATTCCCAACTACC+CGG | + | chr3.2:52105902-52105921 | MS.gene05720:CDS | 40.0% | |
| TGCAACAATGGAGCTGTTAA+AGG | + | chr3.2:52105951-52105970 | MS.gene05720:CDS | 40.0% | |
| TTGAGTACCTGTATTGTTGG+AGG | - | chr3.2:52104905-52104924 | None:intergenic | 40.0% | |
| TTGTTGCACACCAACAAAGT+AGG | - | chr3.2:52105939-52105958 | None:intergenic | 40.0% | |
| TTTGTCTGTGAGATGCTGAT+AGG | - | chr3.2:52106398-52106417 | None:intergenic | 40.0% | |
| ! | AAAGGTGTGCAAGGAATCAA+GGG | - | chr3.2:52106450-52106469 | None:intergenic | 40.0% |
| ! | ATGTCTTTGGGAATGGAATC+GGG | - | chr3.2:52104813-52104832 | None:intergenic | 40.0% |
| ! | CAAGGTCTTCAAGTTCATCA+TGG | - | chr3.2:52104857-52104876 | None:intergenic | 40.0% |
| ! | CCATGATATGTCTTTGGGAA+TGG | - | chr3.2:52104820-52104839 | None:intergenic | 40.0% |
| ! | TAAAGGTGTGCAAGGAATCA+AGG | - | chr3.2:52106451-52106470 | None:intergenic | 40.0% |
| ! | TGTAACATTAGGTGTTGCCT+TGG | + | chr3.2:52106570-52106589 | MS.gene05720:intron | 40.0% |
| !! | TTTCGAGGAGCATTTGATCT+AGG | - | chr3.2:52106215-52106234 | None:intergenic | 40.0% |
| !!! | GCAGCTAAAGTTTTGAGGTT+TGG | + | chr3.2:52105614-52105633 | MS.gene05720:CDS | 40.0% |
| !!! | TCTCTGGCTTTGAAGCTTTT+AGG | + | chr3.2:52106321-52106340 | MS.gene05720:intron | 40.0% |
| AAGGTGTGCAAGGAATCAAG+GGG | - | chr3.2:52106449-52106468 | None:intergenic | 45.0% | |
| AATATCGTCCCACTGAGTTG+TGG | - | chr3.2:52104718-52104737 | None:intergenic | 45.0% | |
| ACAACCACCCAAACATCAGA+TGG | - | chr3.2:52105692-52105711 | None:intergenic | 45.0% | |
| ACGACAACATTAGAGAGAGC+TGG | + | chr3.2:52105221-52105240 | MS.gene05720:intron | 45.0% | |
| AGAAGGTTCCACAACTCAGT+GGG | + | chr3.2:52104707-52104726 | MS.gene05720:CDS | 45.0% | |
| AGATGGTCGAAACTACGCTT+AGG | + | chr3.2:52105295-52105314 | MS.gene05720:intron | 45.0% | |
| AGGATCTGATTTCGTACGAG+AGG | + | chr3.2:52105655-52105674 | MS.gene05720:CDS | 45.0% | |
| AGTCGTCATCATGCTCTTCA+TGG | - | chr3.2:52106708-52106727 | None:intergenic | 45.0% | |
| ATCGCTTCCTCCAACAATAC+AGG | + | chr3.2:52104895-52104914 | MS.gene05720:CDS | 45.0% | |
| ATGGAATCGGGATCAATGGA+AGG | - | chr3.2:52104801-52104820 | None:intergenic | 45.0% | |
| CGACAACATTAGAGAGAGCT+GGG | + | chr3.2:52105222-52105241 | MS.gene05720:intron | 45.0% | |
| CGGGGATGAGAATATTGTGT+TGG | + | chr3.2:52105164-52105183 | MS.gene05720:intron | 45.0% | |
| CTCTGGCCATCATTAAGTAC+AGG | - | chr3.2:52106613-52106632 | None:intergenic | 45.0% | |
| CTTGCGAACTCCATCAATGA+CGG | - | chr3.2:52106659-52106678 | None:intergenic | 45.0% | |
| GAAACTACGCTTAGGTGGTT+TGG | + | chr3.2:52105303-52105322 | MS.gene05720:intron | 45.0% | |
| GACAACATTAGAGAGAGCTG+GGG | + | chr3.2:52105223-52105242 | MS.gene05720:intron | 45.0% | |
| TAGAAGGTTCCACAACTCAG+TGG | + | chr3.2:52104706-52104725 | MS.gene05720:CDS | 45.0% | |
| TCAAGACAAGCCGTCATTGA+TGG | + | chr3.2:52106646-52106665 | MS.gene05720:CDS | 45.0% | |
| TCATTGATGGAGTTCGCAAG+AGG | + | chr3.2:52106659-52106678 | MS.gene05720:CDS | 45.0% | |
| TGGAATCGGGATCAATGGAA+GGG | - | chr3.2:52104800-52104819 | None:intergenic | 45.0% | |
| ! | AAAGGTGGTGGTTTGAAAGC+GGG | - | chr3.2:52104774-52104793 | None:intergenic | 45.0% |
| ! | AGGAGGCAGCTAAAGTTTTG+AGG | + | chr3.2:52105609-52105628 | MS.gene05720:CDS | 45.0% |
| ! | GAAAGGTGGTGGTTTGAAAG+CGG | - | chr3.2:52104775-52104794 | None:intergenic | 45.0% |
| ! | GAAGAGGTTAGCTGAGATAC+AGG | + | chr3.2:52105589-52105608 | MS.gene05720:CDS | 45.0% |
| ! | TTTATCCACCTGGTGTCAAC+AGG | + | chr3.2:52105506-52105525 | MS.gene05720:intron | 45.0% |
| !! | AGAGCTGGGGTAGTTTGTTT+AGG | + | chr3.2:52105236-52105255 | MS.gene05720:intron | 45.0% |
| AAGGAGAGTAGATCAGACGG+AGG | + | chr3.2:52105361-52105380 | MS.gene05720:intron | 50.0% | |
| AGGAGGAAGATTGCCGAGTT+TGG | - | chr3.2:52104745-52104764 | None:intergenic | 50.0% | |
| ATCTGATTGGCACAGGACCA+AGG | - | chr3.2:52106590-52106609 | None:intergenic | 50.0% | |
| GCAGGCTCCATCTGATGTTT+GGG | + | chr3.2:52105682-52105701 | MS.gene05720:CDS | 50.0% | |
| GGAATCGGGATCAATGGAAG+GGG | - | chr3.2:52104799-52104818 | None:intergenic | 50.0% | |
| GGATCAATGGAAGGGGAGAA+AGG | - | chr3.2:52104792-52104811 | None:intergenic | 50.0% | |
| GGATCAGTGACTCCCATTTC+AGG | + | chr3.2:52105635-52105654 | MS.gene05720:CDS | 50.0% | |
| GGGAATGGAATCGGGATCAA+TGG | - | chr3.2:52104805-52104824 | None:intergenic | 50.0% | |
| GGTTTGAAAGCGGGTGGTTT+AGG | - | chr3.2:52104765-52104784 | None:intergenic | 50.0% | |
| GTACAGGATCTGATTGGCAC+AGG | - | chr3.2:52106597-52106616 | None:intergenic | 50.0% | |
| TCAATGGAAGGGGAGAAAGG+TGG | - | chr3.2:52104789-52104808 | None:intergenic | 50.0% | |
| TGGTCGAAACTACGCTTAGG+TGG | + | chr3.2:52105298-52105317 | MS.gene05720:intron | 50.0% | |
| TTGAAAGCGGGTGGTTTAGG+AGG | - | chr3.2:52104762-52104781 | None:intergenic | 50.0% | |
| TTGATTCCTCGTCTCTGCTC+TGG | - | chr3.2:52106630-52106649 | None:intergenic | 50.0% | |
| TTTCGTACGAGAGGTTTCGC+AGG | + | chr3.2:52105664-52105683 | MS.gene05720:CDS | 50.0% | |
| ! | GAGGTTAGCTGAGATACAGG+AGG | + | chr3.2:52105592-52105611 | MS.gene05720:CDS | 50.0% |
| ACATGAGCAACGGAGCTTGC+AGG | - | chr3.2:52106045-52106064 | None:intergenic | 55.0% | |
| ATGGAAGGGGAGAAAGGTGG+TGG | - | chr3.2:52104786-52104805 | None:intergenic | 55.0% | |
| CAACACCACCTGTTGACACC+AGG | - | chr3.2:52105517-52105536 | None:intergenic | 55.0% | |
| CGCAGGCTCCATCTGATGTT+TGG | + | chr3.2:52105681-52105700 | MS.gene05720:CDS | 55.0% | |
| GGCTCCATCTGATGTTTGGG+TGG | + | chr3.2:52105685-52105704 | MS.gene05720:CDS | 55.0% | |
| GGGCGAAGATGTACTCCTGA+AGG | + | chr3.2:52105999-52106018 | MS.gene05720:CDS | 55.0% | |
| ! | ATCCACCTGGTGTCAACAGG+TGG | + | chr3.2:52105509-52105528 | MS.gene05720:intron | 55.0% |
| CACCACCTGTTGACACCAGG+TGG | - | chr3.2:52105514-52105533 | None:intergenic | 60.0% | |
| TGATGGCCAGAGCAGAGACG+AGG | + | chr3.2:52106621-52106640 | MS.gene05720:CDS | 60.0% | |
| ! | GGTGGTGGTTTGAAAGCGGG+TGG | - | chr3.2:52104771-52104790 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 52104675 | 52106741 | 52104675 | ID=MS.gene05720 |
| chr3.2 | mRNA | 52104675 | 52106741 | 52104675 | ID=MS.gene05720.t1;Parent=MS.gene05720 |
| chr3.2 | exon | 52104675 | 52104916 | 52104675 | ID=MS.gene05720.t1.exon1;Parent=MS.gene05720.t1 |
| chr3.2 | CDS | 52104675 | 52104916 | 52104675 | ID=cds.MS.gene05720.t1;Parent=MS.gene05720.t1 |
| chr3.2 | exon | 52105586 | 52105729 | 52105586 | ID=MS.gene05720.t1.exon2;Parent=MS.gene05720.t1 |
| chr3.2 | CDS | 52105586 | 52105729 | 52105586 | ID=cds.MS.gene05720.t1;Parent=MS.gene05720.t1 |
| chr3.2 | exon | 52105815 | 52106020 | 52105815 | ID=MS.gene05720.t1.exon3;Parent=MS.gene05720.t1 |
| chr3.2 | CDS | 52105815 | 52106020 | 52105815 | ID=cds.MS.gene05720.t1;Parent=MS.gene05720.t1 |
| chr3.2 | exon | 52106581 | 52106741 | 52106581 | ID=MS.gene05720.t1.exon4;Parent=MS.gene05720.t1 |
| chr3.2 | CDS | 52106581 | 52106741 | 52106581 | ID=cds.MS.gene05720.t1;Parent=MS.gene05720.t1 |
| Gene Sequence |
| Protein sequence |
