Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057254.t1 | XP_003602392.1 | 99.7 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 1.10E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057254.t1 | Q9XGN1 | 78.5 | 344 | 69 | 3 | 1 | 342 | 1 | 341 | 1.1e-155 | 550.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057254.t1 | B4XH97 | 99.7 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 8.0e-197 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51926 | MS.gene057254 | PPI |
| MS.gene057254 | MS.gene024336 | PPI |
| MS.gene52286 | MS.gene057254 | PPI |
| MS.gene057254 | MS.gene72217 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057254.t1 | MTR_3g092840 | 99.708 | 342 | 1 | 0 | 1 | 342 | 1 | 342 | 0.0 | 706 |
| MS.gene057254.t1 | MTR_7g084810 | 59.143 | 350 | 126 | 5 | 3 | 342 | 10 | 352 | 6.46e-149 | 423 |
| MS.gene057254.t1 | MTR_3g092830 | 86.957 | 92 | 12 | 0 | 251 | 342 | 1 | 92 | 1.84e-53 | 171 |
| MS.gene057254.t1 | MTR_2g016160 | 27.083 | 192 | 133 | 4 | 131 | 319 | 105 | 292 | 2.44e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057254.t1 | AT5G24520 | 78.841 | 345 | 66 | 4 | 1 | 342 | 1 | 341 | 0.0 | 558 |
| MS.gene057254.t1 | AT5G24520 | 78.841 | 345 | 66 | 4 | 1 | 342 | 1 | 341 | 0.0 | 558 |
| MS.gene057254.t1 | AT5G24520 | 78.841 | 345 | 66 | 4 | 1 | 342 | 1 | 341 | 0.0 | 558 |
| MS.gene057254.t1 | AT5G24520 | 78.841 | 345 | 66 | 4 | 1 | 342 | 1 | 341 | 0.0 | 558 |
| MS.gene057254.t1 | AT1G12910 | 61.094 | 329 | 119 | 4 | 18 | 342 | 23 | 346 | 4.80e-147 | 419 |
| MS.gene057254.t1 | AT3G26640 | 58.382 | 346 | 133 | 5 | 1 | 342 | 8 | 346 | 2.71e-145 | 414 |
| MS.gene057254.t1 | AT1G29260 | 29.167 | 192 | 129 | 4 | 131 | 319 | 104 | 291 | 2.99e-13 | 70.1 |
Find 110 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATATGCTTCGAACTTCT+TGG | 0.223079 | 3.2:+78111986 | None:intergenic |
| TAGTAATAAAGTTGTGATTT+TGG | 0.231763 | 3.2:-78112083 | MS.gene057254:CDS |
| ATGATGCACAGGCTCTTATT+TGG | 0.239316 | 3.2:-78111952 | MS.gene057254:CDS |
| TTCCAATCAAAGGATGTTAA+AGG | 0.269478 | 3.2:+78112406 | None:intergenic |
| TTGACACTACTTGTACTATC+TGG | 0.291467 | 3.2:-78112348 | MS.gene057254:CDS |
| CTCCTTTAACATCCTTTGAT+TGG | 0.296600 | 3.2:-78112408 | MS.gene057254:CDS |
| AACTACACCGGTGGCGGAAT+TGG | 0.308686 | 3.2:-78112047 | MS.gene057254:CDS |
| GGCTCTTATTTGGGAGTTGC+CGG | 0.327141 | 3.2:-78111942 | MS.gene057254:CDS |
| GGATACCCCTTTGCTTCGTT+TGG | 0.334156 | 3.2:-78112152 | MS.gene057254:CDS |
| ACTTGAAGTTCCAATTCGTT+TGG | 0.338704 | 3.2:+78112372 | None:intergenic |
| AGTTCGAAGCATATTTGTTC+TGG | 0.340652 | 3.2:-78111980 | MS.gene057254:CDS |
| CAAGAAGGATTTGAGGTATA+TGG | 0.353157 | 3.2:-78112122 | MS.gene057254:CDS |
| CCGGTGACTATCTCCGTCTC+TGG | 0.354504 | 3.2:-78112498 | MS.gene057254:CDS |
| TTTGCTTCGGTTTCTGCTGA+TGG | 0.360345 | 3.2:-78112241 | MS.gene057254:CDS |
| CCCCTTTGCTTCGTTTGGCT+TGG | 0.361608 | 3.2:-78112147 | MS.gene057254:CDS |
| GGTTTGAGTGAGAGTGTGTC+AGG | 0.364304 | 3.2:+78112628 | None:intergenic |
| GGTCTGCTGCTCAGCCTGAT+TGG | 0.373267 | 3.2:-78111847 | MS.gene057254:CDS |
| TGATGCACAGGCTCTTATTT+GGG | 0.374972 | 3.2:-78111951 | MS.gene057254:CDS |
| TTTCTGCTGATGGGTCTGTT+AGG | 0.375024 | 3.2:-78112231 | MS.gene057254:CDS |
| GTATGTTACGGAGTTGTTAT+CGG | 0.377404 | 3.2:+78112774 | None:intergenic |
| GAAATTGAGCCCAAACGAAT+TGG | 0.382415 | 3.2:-78112382 | MS.gene057254:CDS |
| CTGGTGTCAATGCGATTGCT+TGG | 0.387077 | 3.2:-78112012 | MS.gene057254:CDS |
| CTTGAAGTTCCAATTCGTTT+GGG | 0.388164 | 3.2:+78112373 | None:intergenic |
| ATGAGTTTGGTGGGTGGGTA+AGG | 0.390168 | 3.2:+78112580 | None:intergenic |
| AGAGGTTTATGATATTGCTT+GGG | 0.401590 | 3.2:-78112278 | MS.gene057254:CDS |
| GACATGGCGTAGAGTGGGTA+TGG | 0.409381 | 3.2:+78112745 | None:intergenic |
| AAGAGGTTTATGATATTGCT+TGG | 0.412325 | 3.2:-78112279 | MS.gene057254:CDS |
| TGTTGTGGGGAATTGGTGTT+GGG | 0.413984 | 3.2:+78112715 | None:intergenic |
| TTGTTGTGGGGAATTGGTGT+TGG | 0.414411 | 3.2:+78112714 | None:intergenic |
| GGAATTGGTGTTGGGAGAGA+TGG | 0.421413 | 3.2:+78112723 | None:intergenic |
| GATGCGTTGTTGTGGGGAAT+TGG | 0.430152 | 3.2:+78112708 | None:intergenic |
| TGGGAGTTGCCGGCTGTGGC+TGG | 0.434983 | 3.2:-78111932 | MS.gene057254:CDS |
| GTGTGTCAGGGTTGAAATTG+AGG | 0.439145 | 3.2:+78112641 | None:intergenic |
| CCGGCTGTGGCTGGTCCGAA+TGG | 0.451106 | 3.2:-78111923 | MS.gene057254:CDS |
| CTCAATTTCATTCCAATCAA+AGG | 0.452776 | 3.2:+78112396 | None:intergenic |
| TTCTGGTGGGGATGATGCAC+AGG | 0.454070 | 3.2:-78111963 | MS.gene057254:CDS |
| AAACGAAGCAAAGGGGTATC+CGG | 0.454376 | 3.2:+78112154 | None:intergenic |
| AGTTGTTATCGGATCGGAGA+TGG | 0.455221 | 3.2:+78112785 | None:intergenic |
| CCAGCAGAATACATAGTCAT+TGG | 0.462312 | 3.2:+78111893 | None:intergenic |
| GGCGGGATGGAACATGAGTT+TGG | 0.463020 | 3.2:+78112567 | None:intergenic |
| TTGCTTCGGTTTCTGCTGAT+GGG | 0.464907 | 3.2:-78112240 | MS.gene057254:CDS |
| TGGTGTCAATGCGATTGCTT+GGG | 0.476618 | 3.2:-78112011 | MS.gene057254:CDS |
| GTTAATTGCGCATGATAAAG+AGG | 0.479182 | 3.2:-78112296 | MS.gene057254:CDS |
| GGAACATGAGTTTGGTGGGT+GGG | 0.485922 | 3.2:+78112575 | None:intergenic |
| CGGCTGTGGCTGGTCCGAAT+GGG | 0.487137 | 3.2:-78111922 | MS.gene057254:CDS |
| GGTAGCGAGGAGGTCGGAGG+AGG | 0.491352 | 3.2:+78112522 | None:intergenic |
| CTTGGAACAAGAAGGATTTG+AGG | 0.491459 | 3.2:-78112129 | MS.gene057254:CDS |
| TCCGACCTCCTCGCTACCTC+CGG | 0.494753 | 3.2:-78112517 | MS.gene057254:CDS |
| TATTTGGGAGTTGCCGGCTG+TGG | 0.495883 | 3.2:-78111936 | MS.gene057254:CDS |
| AAAGCAATAGCAATCCAATC+AGG | 0.495960 | 3.2:+78111833 | None:intergenic |
| GTCATTGGATCAATCCCATT+CGG | 0.499402 | 3.2:+78111908 | None:intergenic |
| GTTGTTATCGGATCGGAGAT+GGG | 0.506009 | 3.2:+78112786 | None:intergenic |
| CCAACGGCGATGCGTTGTTG+TGG | 0.506615 | 3.2:+78112700 | None:intergenic |
| CAACGGCGATGCGTTGTTGT+GGG | 0.514389 | 3.2:+78112701 | None:intergenic |
| TGACACTACTTGTACTATCT+GGG | 0.515740 | 3.2:-78112347 | MS.gene057254:CDS |
| AGCAAAGGGGTATCCGGCTG+TGG | 0.516356 | 3.2:+78112160 | None:intergenic |
| TCGAAGGAGAGTGAAGGTTG+AGG | 0.520984 | 3.2:+78112607 | None:intergenic |
| GAAGCATATTTGTTCTGGTG+GGG | 0.522421 | 3.2:-78111975 | MS.gene057254:CDS |
| TCCAAGCCAAACGAAGCAAA+GGG | 0.522555 | 3.2:+78112146 | None:intergenic |
| AATTCCGCCACCGGTGTAGT+TGG | 0.525035 | 3.2:+78112049 | None:intergenic |
| TCGAAGCATATTTGTTCTGG+TGG | 0.528006 | 3.2:-78111977 | MS.gene057254:CDS |
| TCGTTTGGCTTGGAACAAGA+AGG | 0.528809 | 3.2:-78112137 | MS.gene057254:CDS |
| CGAAGCATATTTGTTCTGGT+GGG | 0.533772 | 3.2:-78111976 | MS.gene057254:CDS |
| CCATTCGGACCAGCCACAGC+CGG | 0.534014 | 3.2:+78111923 | None:intergenic |
| CGGTGACTATCTCCGTCTCT+GGG | 0.535569 | 3.2:-78112497 | MS.gene057254:CDS |
| GGTTTATGATATTGCTTGGG+GGG | 0.537143 | 3.2:-78112275 | MS.gene057254:CDS |
| TGTCTCTCCAATTCCGCCAC+CGG | 0.541299 | 3.2:+78112040 | None:intergenic |
| ACATGGCGTAGAGTGGGTAT+GGG | 0.541875 | 3.2:+78112746 | None:intergenic |
| TTCCAAGCCAAACGAAGCAA+AGG | 0.542040 | 3.2:+78112145 | None:intergenic |
| ATCACCAACTACACCGGTGG+CGG | 0.543805 | 3.2:-78112053 | MS.gene057254:CDS |
| GAAAAGAGAAAGAGCTTCAA+CGG | 0.553285 | 3.2:+78112459 | None:intergenic |
| CCAATGACTATGTATTCTGC+TGG | 0.558064 | 3.2:-78111893 | MS.gene057254:CDS |
| GTATGGGGAATCGTATGTTA+CGG | 0.558553 | 3.2:+78112762 | None:intergenic |
| GGAGGTAGCGAGGAGGTCGG+AGG | 0.571097 | 3.2:+78112519 | None:intergenic |
| CATGGCGTAGAGTGGGTATG+GGG | 0.571219 | 3.2:+78112747 | None:intergenic |
| TAAAGGAGCACAAAACTCAC+TGG | 0.571374 | 3.2:+78112423 | None:intergenic |
| GAGAAGAATGTGTGGCGGGA+TGG | 0.574788 | 3.2:+78112554 | None:intergenic |
| GTGAAATTAATCAGCTTCAG+TGG | 0.574954 | 3.2:-78111868 | MS.gene057254:CDS |
| CCACAACAACGCATCGCCGT+TGG | 0.579052 | 3.2:-78112700 | MS.gene057254:CDS |
| CCAGAGACGGAGATAGTCAC+CGG | 0.580223 | 3.2:+78112498 | None:intergenic |
| GTTTGAGTGAGAGTGTGTCA+GGG | 0.584476 | 3.2:+78112629 | None:intergenic |
| TGGAACATGAGTTTGGTGGG+TGG | 0.586765 | 3.2:+78112574 | None:intergenic |
| GATAGTCACCGGAGGTAGCG+AGG | 0.590791 | 3.2:+78112509 | None:intergenic |
| AATCTATGAGAGTCCACAGC+CGG | 0.591354 | 3.2:-78112173 | MS.gene057254:CDS |
| AGATGGACATGGCGTAGAGT+GGG | 0.592865 | 3.2:+78112740 | None:intergenic |
| GAGATGGACATGGCGTAGAG+TGG | 0.596359 | 3.2:+78112739 | None:intergenic |
| GGATGATCGAAGGAGAGTGA+AGG | 0.596401 | 3.2:+78112601 | None:intergenic |
| ACTATCTGGGACATTGAAAG+AGG | 0.599329 | 3.2:-78112334 | MS.gene057254:CDS |
| AACGGCGATGCGTTGTTGTG+GGG | 0.605737 | 3.2:+78112702 | None:intergenic |
| GGGATGGAACATGAGTTTGG+TGG | 0.607789 | 3.2:+78112570 | None:intergenic |
| GGATGGAACATGAGTTTGGT+GGG | 0.609593 | 3.2:+78112571 | None:intergenic |
| TGGAGAGAAGAATGTGTGGC+GGG | 0.613114 | 3.2:+78112550 | None:intergenic |
| TTTCGCGAACTTCCCAGAGA+CGG | 0.616480 | 3.2:+78112485 | None:intergenic |
| GAGGTTTATGATATTGCTTG+GGG | 0.618826 | 3.2:-78112277 | MS.gene057254:CDS |
| TTACGGAGTTGTTATCGGAT+CGG | 0.627468 | 3.2:+78112779 | None:intergenic |
| TATTAGATCACCAACTACAC+CGG | 0.632803 | 3.2:-78112059 | MS.gene057254:CDS |
| CTGGAGAGAAGAATGTGTGG+CGG | 0.637151 | 3.2:+78112549 | None:intergenic |
| TCGGAGATGGGATTCTTGTG+TGG | 0.641501 | 3.2:+78112798 | None:intergenic |
| GAATTGGAGAGACATCGTGC+TGG | 0.649925 | 3.2:-78112031 | MS.gene057254:CDS |
| GGGTGGGTAAGGATGATCGA+AGG | 0.652213 | 3.2:+78112591 | None:intergenic |
| ACCGGAGGTAGCGAGGAGGT+CGG | 0.660144 | 3.2:+78112516 | None:intergenic |
| TTCTTCGATGAAGCTACCAA+CGG | 0.661547 | 3.2:+78112684 | None:intergenic |
| TGAAATTGAGGATATCGATG+CGG | 0.685931 | 3.2:+78112653 | None:intergenic |
| TAGATCACCAACTACACCGG+TGG | 0.690300 | 3.2:-78112056 | MS.gene057254:CDS |
| TTTCTGGAGAGAAGAATGTG+TGG | 0.702519 | 3.2:+78112546 | None:intergenic |
| CCAAGCCAAACGAAGCAAAG+GGG | 0.704032 | 3.2:+78112147 | None:intergenic |
| GAGACGGAGATAGTCACCGG+AGG | 0.711536 | 3.2:+78112501 | None:intergenic |
| AGGTTTATGATATTGCTTGG+GGG | 0.720364 | 3.2:-78112276 | MS.gene057254:CDS |
| AGTCACCGGAGGTAGCGAGG+AGG | 0.732592 | 3.2:+78112512 | None:intergenic |
| GGTGTTGGGAGAGATGGACA+TGG | 0.772892 | 3.2:+78112729 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTAATAAAGTTGTGATTT+TGG | - | chr3.2:78112527-78112546 | MS.gene057254:CDS | 20.0% |
| !!! | TGTTAGGATTTTTGATTTAA+GGG | - | chr3.2:78112395-78112414 | MS.gene057254:CDS | 20.0% |
| !! | TAATAAAATGCAGCTTTTGA+GGG | - | chr3.2:78112803-78112822 | MS.gene057254:CDS | 25.0% |
| !!! | CTGTTAGGATTTTTGATTTA+AGG | - | chr3.2:78112394-78112413 | MS.gene057254:CDS | 25.0% |
| AAGAGGTTTATGATATTGCT+TGG | - | chr3.2:78112331-78112350 | MS.gene057254:CDS | 30.0% | |
| AGAGGTTTATGATATTGCTT+GGG | - | chr3.2:78112332-78112351 | MS.gene057254:CDS | 30.0% | |
| CTCAATTTCATTCCAATCAA+AGG | + | chr3.2:78112217-78112236 | None:intergenic | 30.0% | |
| TTCCAATCAAAGGATGTTAA+AGG | + | chr3.2:78112207-78112226 | None:intergenic | 30.0% | |
| ! | CTAATAAAATGCAGCTTTTG+AGG | - | chr3.2:78112802-78112821 | MS.gene057254:CDS | 30.0% |
| AAAGCAATAGCAATCCAATC+AGG | + | chr3.2:78112780-78112799 | None:intergenic | 35.0% | |
| ACTTGAAGTTCCAATTCGTT+TGG | + | chr3.2:78112241-78112260 | None:intergenic | 35.0% | |
| AGGTTTATGATATTGCTTGG+GGG | - | chr3.2:78112334-78112353 | MS.gene057254:CDS | 35.0% | |
| AGTTCGAAGCATATTTGTTC+TGG | - | chr3.2:78112630-78112649 | MS.gene057254:CDS | 35.0% | |
| CAAATATGCTTCGAACTTCT+TGG | + | chr3.2:78112627-78112646 | None:intergenic | 35.0% | |
| CTCCTTTAACATCCTTTGAT+TGG | - | chr3.2:78112202-78112221 | MS.gene057254:CDS | 35.0% | |
| CTTGAAGTTCCAATTCGTTT+GGG | + | chr3.2:78112240-78112259 | None:intergenic | 35.0% | |
| GAAAAGAGAAAGAGCTTCAA+CGG | + | chr3.2:78112154-78112173 | None:intergenic | 35.0% | |
| GAGGTTTATGATATTGCTTG+GGG | - | chr3.2:78112333-78112352 | MS.gene057254:CDS | 35.0% | |
| GTATGTTACGGAGTTGTTAT+CGG | + | chr3.2:78111839-78111858 | None:intergenic | 35.0% | |
| GTGAAATTAATCAGCTTCAG+TGG | - | chr3.2:78112742-78112761 | MS.gene057254:CDS | 35.0% | |
| GTTAATTGCGCATGATAAAG+AGG | - | chr3.2:78112314-78112333 | MS.gene057254:CDS | 35.0% | |
| TATTAGATCACCAACTACAC+CGG | - | chr3.2:78112551-78112570 | MS.gene057254:CDS | 35.0% | |
| TGAAATTGAGGATATCGATG+CGG | + | chr3.2:78111960-78111979 | None:intergenic | 35.0% | |
| TGACACTACTTGTACTATCT+GGG | - | chr3.2:78112263-78112282 | MS.gene057254:CDS | 35.0% | |
| TTGACACTACTTGTACTATC+TGG | - | chr3.2:78112262-78112281 | MS.gene057254:CDS | 35.0% | |
| ! | CAAGAAGGATTTGAGGTATA+TGG | - | chr3.2:78112488-78112507 | MS.gene057254:CDS | 35.0% |
| ! | GTATATGGCGACAATTTTGA+TGG | - | chr3.2:78112503-78112522 | MS.gene057254:CDS | 35.0% |
| ATGATGCACAGGCTCTTATT+TGG | - | chr3.2:78112658-78112677 | MS.gene057254:CDS | 40.0% | |
| CCAATGACTATGTATTCTGC+TGG | - | chr3.2:78112717-78112736 | MS.gene057254:CDS | 40.0% | |
| CCAGCAGAATACATAGTCAT+TGG | + | chr3.2:78112720-78112739 | None:intergenic | 40.0% | |
| CGAAGCATATTTGTTCTGGT+GGG | - | chr3.2:78112634-78112653 | MS.gene057254:CDS | 40.0% | |
| CTTGGAACAAGAAGGATTTG+AGG | - | chr3.2:78112481-78112500 | MS.gene057254:CDS | 40.0% | |
| GAAATTGAGCCCAAACGAAT+TGG | - | chr3.2:78112228-78112247 | MS.gene057254:CDS | 40.0% | |
| GAAGCATATTTGTTCTGGTG+GGG | - | chr3.2:78112635-78112654 | MS.gene057254:CDS | 40.0% | |
| GGTTTATGATATTGCTTGGG+GGG | - | chr3.2:78112335-78112354 | MS.gene057254:CDS | 40.0% | |
| GTATGGGGAATCGTATGTTA+CGG | + | chr3.2:78111851-78111870 | None:intergenic | 40.0% | |
| GTCATTGGATCAATCCCATT+CGG | + | chr3.2:78112705-78112724 | None:intergenic | 40.0% | |
| TCGAAGCATATTTGTTCTGG+TGG | - | chr3.2:78112633-78112652 | MS.gene057254:CDS | 40.0% | |
| TTACGGAGTTGTTATCGGAT+CGG | + | chr3.2:78111834-78111853 | None:intergenic | 40.0% | |
| TTCTTCGATGAAGCTACCAA+CGG | + | chr3.2:78111929-78111948 | None:intergenic | 40.0% | |
| ! | ACTATCTGGGACATTGAAAG+AGG | - | chr3.2:78112276-78112295 | MS.gene057254:CDS | 40.0% |
| ! | GGAATCAAGGGTTTTTGCTT+CGG | - | chr3.2:78112356-78112375 | MS.gene057254:CDS | 40.0% |
| ! | TAAAGGAGCACAAAACTCAC+TGG | + | chr3.2:78112190-78112209 | None:intergenic | 40.0% |
| ! | TGATGCACAGGCTCTTATTT+GGG | - | chr3.2:78112659-78112678 | MS.gene057254:CDS | 40.0% |
| ! | TTTCTGGAGAGAAGAATGTG+TGG | + | chr3.2:78112067-78112086 | None:intergenic | 40.0% |
| AATCTATGAGAGTCCACAGC+CGG | - | chr3.2:78112437-78112456 | MS.gene057254:CDS | 45.0% | |
| AGTTGTTATCGGATCGGAGA+TGG | + | chr3.2:78111828-78111847 | None:intergenic | 45.0% | |
| ATATTGCTTGGGGGGAATCA+AGG | - | chr3.2:78112343-78112362 | MS.gene057254:CDS | 45.0% | |
| GGATGGAACATGAGTTTGGT+GGG | + | chr3.2:78112042-78112061 | None:intergenic | 45.0% | |
| GTGTGTCAGGGTTGAAATTG+AGG | + | chr3.2:78111972-78111991 | None:intergenic | 45.0% | |
| GTTGTTATCGGATCGGAGAT+GGG | + | chr3.2:78111827-78111846 | None:intergenic | 45.0% | |
| TATTGCTTGGGGGGAATCAA+GGG | - | chr3.2:78112344-78112363 | MS.gene057254:CDS | 45.0% | |
| TCCAAGCCAAACGAAGCAAA+GGG | + | chr3.2:78112467-78112486 | None:intergenic | 45.0% | |
| TTCCAAGCCAAACGAAGCAA+AGG | + | chr3.2:78112468-78112487 | None:intergenic | 45.0% | |
| TTGCTTCGGTTTCTGCTGAT+GGG | - | chr3.2:78112370-78112389 | MS.gene057254:CDS | 45.0% | |
| TTGTTGTGGGGAATTGGTGT+TGG | + | chr3.2:78111899-78111918 | None:intergenic | 45.0% | |
| TTTGCTTCGGTTTCTGCTGA+TGG | - | chr3.2:78112369-78112388 | MS.gene057254:CDS | 45.0% | |
| ! | GTTTGAGTGAGAGTGTGTCA+GGG | + | chr3.2:78111984-78112003 | None:intergenic | 45.0% |
| ! | TGGTGTCAATGCGATTGCTT+GGG | - | chr3.2:78112599-78112618 | MS.gene057254:CDS | 45.0% |
| ! | TGTTGTGGGGAATTGGTGTT+GGG | + | chr3.2:78111898-78111917 | None:intergenic | 45.0% |
| ! | TTTCTGCTGATGGGTCTGTT+AGG | - | chr3.2:78112379-78112398 | MS.gene057254:CDS | 45.0% |
| !! | AAACGAAGCAAAGGGGTATC+CGG | + | chr3.2:78112459-78112478 | None:intergenic | 45.0% |
| !! | TCGTTTGGCTTGGAACAAGA+AGG | - | chr3.2:78112473-78112492 | MS.gene057254:CDS | 45.0% |
| ACATGGCGTAGAGTGGGTAT+GGG | + | chr3.2:78111867-78111886 | None:intergenic | 50.0% | |
| AGATGGACATGGCGTAGAGT+GGG | + | chr3.2:78111873-78111892 | None:intergenic | 50.0% | |
| CCAAGCCAAACGAAGCAAAG+GGG | + | chr3.2:78112466-78112485 | None:intergenic | 50.0% | |
| CTGGAGAGAAGAATGTGTGG+CGG | + | chr3.2:78112064-78112083 | None:intergenic | 50.0% | |
| GAATTGGAGAGACATCGTGC+TGG | - | chr3.2:78112579-78112598 | MS.gene057254:CDS | 50.0% | |
| GATGCGTTGTTGTGGGGAAT+TGG | + | chr3.2:78111905-78111924 | None:intergenic | 50.0% | |
| GGATACCCCTTTGCTTCGTT+TGG | - | chr3.2:78112458-78112477 | MS.gene057254:CDS | 50.0% | |
| GGATGATCGAAGGAGAGTGA+AGG | + | chr3.2:78112012-78112031 | None:intergenic | 50.0% | |
| GGGATGGAACATGAGTTTGG+TGG | + | chr3.2:78112043-78112062 | None:intergenic | 50.0% | |
| TAGATCACCAACTACACCGG+TGG | - | chr3.2:78112554-78112573 | MS.gene057254:CDS | 50.0% | |
| TCGAAGGAGAGTGAAGGTTG+AGG | + | chr3.2:78112006-78112025 | None:intergenic | 50.0% | |
| TCGGAGATGGGATTCTTGTG+TGG | + | chr3.2:78111815-78111834 | None:intergenic | 50.0% | |
| TGGAGAGAAGAATGTGTGGC+GGG | + | chr3.2:78112063-78112082 | None:intergenic | 50.0% | |
| TTTCGCGAACTTCCCAGAGA+CGG | + | chr3.2:78112128-78112147 | None:intergenic | 50.0% | |
| ! | ATGAGTTTGGTGGGTGGGTA+AGG | + | chr3.2:78112033-78112052 | None:intergenic | 50.0% |
| ! | CTGGTGTCAATGCGATTGCT+TGG | - | chr3.2:78112598-78112617 | MS.gene057254:CDS | 50.0% |
| ! | GGAACATGAGTTTGGTGGGT+GGG | + | chr3.2:78112038-78112057 | None:intergenic | 50.0% |
| ! | GGCTCTTATTTGGGAGTTGC+CGG | - | chr3.2:78112668-78112687 | MS.gene057254:CDS | 50.0% |
| ! | GGTTTGAGTGAGAGTGTGTC+AGG | + | chr3.2:78111985-78112004 | None:intergenic | 50.0% |
| ! | TGGAACATGAGTTTGGTGGG+TGG | + | chr3.2:78112039-78112058 | None:intergenic | 50.0% |
| !! | GGAATTGGTGTTGGGAGAGA+TGG | + | chr3.2:78111890-78111909 | None:intergenic | 50.0% |
| AACGGCGATGCGTTGTTGTG+GGG | + | chr3.2:78111911-78111930 | None:intergenic | 55.0% | |
| AATTCCGCCACCGGTGTAGT+TGG | + | chr3.2:78112564-78112583 | None:intergenic | 55.0% | |
| ATCACCAACTACACCGGTGG+CGG | - | chr3.2:78112557-78112576 | MS.gene057254:CDS | 55.0% | |
| CAACGGCGATGCGTTGTTGT+GGG | + | chr3.2:78111912-78111931 | None:intergenic | 55.0% | |
| CATGGCGTAGAGTGGGTATG+GGG | + | chr3.2:78111866-78111885 | None:intergenic | 55.0% | |
| CCAGAGACGGAGATAGTCAC+CGG | + | chr3.2:78112115-78112134 | None:intergenic | 55.0% | |
| CCCCTTTGCTTCGTTTGGCT+TGG | - | chr3.2:78112463-78112482 | MS.gene057254:CDS | 55.0% | |
| CGGTGACTATCTCCGTCTCT+GGG | - | chr3.2:78112113-78112132 | MS.gene057254:CDS | 55.0% | |
| GACATGGCGTAGAGTGGGTA+TGG | + | chr3.2:78111868-78111887 | None:intergenic | 55.0% | |
| GAGATGGACATGGCGTAGAG+TGG | + | chr3.2:78111874-78111893 | None:intergenic | 55.0% | |
| GGCGGGATGGAACATGAGTT+TGG | + | chr3.2:78112046-78112065 | None:intergenic | 55.0% | |
| GGGTGGGTAAGGATGATCGA+AGG | + | chr3.2:78112022-78112041 | None:intergenic | 55.0% | |
| TGTCTCTCCAATTCCGCCAC+CGG | + | chr3.2:78112573-78112592 | None:intergenic | 55.0% | |
| TTCTGGTGGGGATGATGCAC+AGG | - | chr3.2:78112647-78112666 | MS.gene057254:CDS | 55.0% | |
| ! | GAGAAGAATGTGTGGCGGGA+TGG | + | chr3.2:78112059-78112078 | None:intergenic | 55.0% |
| ! | GGTGTTGGGAGAGATGGACA+TGG | + | chr3.2:78111884-78111903 | None:intergenic | 55.0% |
| ! | TATTTGGGAGTTGCCGGCTG+TGG | - | chr3.2:78112674-78112693 | MS.gene057254:CDS | 55.0% |
| !! | AACTACACCGGTGGCGGAAT+TGG | - | chr3.2:78112563-78112582 | MS.gene057254:CDS | 55.0% |
| CCAACGGCGATGCGTTGTTG+TGG | + | chr3.2:78111913-78111932 | None:intergenic | 60.0% | |
| CCACAACAACGCATCGCCGT+TGG | - | chr3.2:78111910-78111929 | MS.gene057254:CDS | 60.0% | |
| CCGGTGACTATCTCCGTCTC+TGG | - | chr3.2:78112112-78112131 | MS.gene057254:CDS | 60.0% | |
| GAGACGGAGATAGTCACCGG+AGG | + | chr3.2:78112112-78112131 | None:intergenic | 60.0% | |
| GATAGTCACCGGAGGTAGCG+AGG | + | chr3.2:78112104-78112123 | None:intergenic | 60.0% | |
| GGTCTGCTGCTCAGCCTGAT+TGG | - | chr3.2:78112763-78112782 | MS.gene057254:CDS | 60.0% | |
| ! | GGAGGTCGGAGGAGGTTTTC+TGG | + | chr3.2:78112083-78112102 | None:intergenic | 60.0% |
| !! | AGCAAAGGGGTATCCGGCTG+TGG | + | chr3.2:78112453-78112472 | None:intergenic | 60.0% |
| ACCGGAGGTAGCGAGGAGGT+CGG | + | chr3.2:78112097-78112116 | None:intergenic | 65.0% | |
| AGTCACCGGAGGTAGCGAGG+AGG | + | chr3.2:78112101-78112120 | None:intergenic | 65.0% | |
| CCATTCGGACCAGCCACAGC+CGG | + | chr3.2:78112690-78112709 | None:intergenic | 65.0% | |
| TCCGACCTCCTCGCTACCTC+CGG | - | chr3.2:78112093-78112112 | MS.gene057254:CDS | 65.0% | |
| ! | CGGCTGTGGCTGGTCCGAAT+GGG | - | chr3.2:78112688-78112707 | MS.gene057254:CDS | 65.0% |
| GGAGGTAGCGAGGAGGTCGG+AGG | + | chr3.2:78112094-78112113 | None:intergenic | 70.0% | |
| GGTAGCGAGGAGGTCGGAGG+AGG | + | chr3.2:78112091-78112110 | None:intergenic | 70.0% | |
| ! | CCGGCTGTGGCTGGTCCGAA+TGG | - | chr3.2:78112687-78112706 | MS.gene057254:CDS | 70.0% |
| ! | TGGGAGTTGCCGGCTGTGGC+TGG | - | chr3.2:78112678-78112697 | MS.gene057254:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78111802 | 78112830 | 78111802 | ID=MS.gene057254 |
| chr3.2 | mRNA | 78111802 | 78112830 | 78111802 | ID=MS.gene057254.t1;Parent=MS.gene057254 |
| chr3.2 | exon | 78111802 | 78112830 | 78111802 | ID=MS.gene057254.t1.exon1;Parent=MS.gene057254.t1 |
| chr3.2 | CDS | 78111802 | 78112830 | 78111802 | ID=cds.MS.gene057254.t1;Parent=MS.gene057254.t1 |
| Gene Sequence |
| Protein sequence |
