Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057539.t1 | XP_003621350.1 | 97.5 | 322 | 7 | 1 | 1 | 321 | 1 | 322 | 3.40E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057539.t1 | Q72GI1 | 33.5 | 167 | 109 | 1 | 110 | 276 | 5 | 169 | 7.2e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057539.t1 | G7L451 | 97.5 | 322 | 7 | 1 | 1 | 321 | 1 | 322 | 2.4e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene057539 | 0.821933 | 3.10E-53 | -1.69E-46 |
| MS.gene054942 | MS.gene057539 | 0.812503 | 4.10E-51 | -1.69E-46 |
| MS.gene057539 | MS.gene06420 | 0.806623 | 7.52E-50 | -1.69E-46 |
| MS.gene057539 | MS.gene09136 | 0.808726 | 2.69E-50 | -1.69E-46 |
| MS.gene057539 | MS.gene36120 | 0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene057539 | MS.gene56484 | 0.838559 | 2.68E-57 | -1.69E-46 |
| MS.gene057539 | MS.gene79290 | 0.815045 | 1.13E-51 | -1.69E-46 |
| MS.gene057539 | MS.gene81029 | 0.801547 | 8.55E-49 | -1.69E-46 |
| MS.gene057539 | MS.gene88630 | 0.805542 | 1.27E-49 | -1.69E-46 |
| MS.gene057539 | MS.gene93731 | 0.805138 | 1.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057539.t1 | MTR_7g012240 | 97.516 | 322 | 7 | 1 | 1 | 321 | 1 | 322 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057539.t1 | AT5G15390 | 58.960 | 346 | 109 | 8 | 1 | 316 | 1 | 343 | 2.99e-134 | 385 |
| MS.gene057539.t1 | AT5G15390 | 54.373 | 263 | 87 | 8 | 1 | 233 | 1 | 260 | 2.54e-87 | 263 |
Find 82 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGAAGGGTTGTGTGATTT+TGG | 0.242135 | 7.2:-85175758 | MS.gene057539:CDS |
| GTTTGCTTGTCACAGGTATA+AGG | 0.313498 | 7.2:-85174019 | MS.gene057539:intron |
| TAGTAGTCGGGAACGAAAAT+AGG | 0.320600 | 7.2:-85173666 | MS.gene057539:intron |
| GAAACGAGGAAGGAGAGATT+TGG | 0.353406 | 7.2:-85175821 | MS.gene057539:CDS |
| CGTCATTTGCAGGGCCGTCA+TGG | 0.355451 | 7.2:-85172845 | MS.gene057539:intron |
| GAGAGAGGGTTTGAATTTGA+AGG | 0.359603 | 7.2:+85176108 | None:intergenic |
| GTCATTTGCAGGGCCGTCAT+GGG | 0.398057 | 7.2:-85172844 | MS.gene057539:intron |
| AATGTTTGTCTTGTTGTTGA+AGG | 0.409274 | 7.2:-85175773 | MS.gene057539:CDS |
| ATGGTTAGACATTGAACTTT+GGG | 0.409657 | 7.2:-85173965 | MS.gene057539:CDS |
| TTTCGGTCTGCTGATGCTCT+TGG | 0.411307 | 7.2:-85175719 | MS.gene057539:CDS |
| GGGTATTAGTGACGAGGCTT+TGG | 0.416031 | 7.2:-85173338 | MS.gene057539:CDS |
| TTCAATGTTTCAGTTGCTGC+AGG | 0.418832 | 7.2:-85173265 | MS.gene057539:CDS |
| GAGTCCACCATCCCTTTCAT+TGG | 0.432958 | 7.2:+85173289 | None:intergenic |
| TGCACCATGCTGTTTGTGAT+AGG | 0.439772 | 7.2:-85173234 | MS.gene057539:CDS |
| CTGAAGTTATTGAAGCTGTT+GGG | 0.442622 | 7.2:-85175856 | MS.gene057539:CDS |
| TAAGCATGGGTGCGGAGAAA+TGG | 0.443836 | 7.2:-85173984 | MS.gene057539:CDS |
| AATGGTTAGACATTGAACTT+TGG | 0.449768 | 7.2:-85173966 | MS.gene057539:CDS |
| TCTCCGCACCCATGCTTACA+TGG | 0.459755 | 7.2:+85173989 | None:intergenic |
| TGAGGAACAGCGGCGGTTTG+TGG | 0.469783 | 7.2:+85176034 | None:intergenic |
| ATGTTGTGGATGGTGTCGTT+TGG | 0.471323 | 7.2:+85176010 | None:intergenic |
| CACTGCAGTATTCCAATGAA+AGG | 0.473386 | 7.2:-85173301 | MS.gene057539:CDS |
| GACTACTATTGCAGTTGGAC+AGG | 0.474059 | 7.2:+85173681 | None:intergenic |
| TAAGGGAACCACCGAGGTTG+AGG | 0.485441 | 7.2:+85175923 | None:intergenic |
| ATGTTTGTCTTGTTGTTGAA+GGG | 0.487440 | 7.2:-85175772 | MS.gene057539:CDS |
| CATCGAAAACTGTCAAGGTA+AGG | 0.487532 | 7.2:+85175905 | None:intergenic |
| TCTGAAGTTATTGAAGCTGT+TGG | 0.497790 | 7.2:-85175857 | MS.gene057539:CDS |
| TTTCATCTGATGCTAACAAA+AGG | 0.498534 | 7.2:-85175676 | MS.gene057539:intron |
| AGCATCGTGAGGTGGATTTG+TGG | 0.501632 | 7.2:+85176068 | None:intergenic |
| TTCCCGACTACTATTGCAGT+TGG | 0.501892 | 7.2:+85173676 | None:intergenic |
| TGGATGGTGTCGTTTGGTTG+AGG | 0.504186 | 7.2:+85176016 | None:intergenic |
| GTCCAACTGCAATAGTAGTC+GGG | 0.524303 | 7.2:-85173678 | MS.gene057539:CDS |
| TGAAGAAAGACAAATTCTAC+TGG | 0.526302 | 7.2:-85172810 | MS.gene057539:CDS |
| GGACAATCGCCATGTAAGCA+TGG | 0.526685 | 7.2:-85173998 | MS.gene057539:CDS |
| AGAGGGTTTGAATTTGAAGG+TGG | 0.531658 | 7.2:+85176111 | None:intergenic |
| TTTCTATCTATGACATGGAC+TGG | 0.537177 | 7.2:-85173705 | MS.gene057539:CDS |
| GATTTGTGGCGGCGGAGAGA+AGG | 0.546039 | 7.2:+85176082 | None:intergenic |
| GCGGAGAGAAGGAGAGAGAG+AGG | 0.552549 | 7.2:+85176093 | None:intergenic |
| TTCCTCGTTTCAGAAATACA+TGG | 0.556247 | 7.2:+85175833 | None:intergenic |
| TGTCCAACTGCAATAGTAGT+CGG | 0.560483 | 7.2:-85173679 | MS.gene057539:CDS |
| GTGAGGTGGATTTGTGGCGG+CGG | 0.567255 | 7.2:+85176074 | None:intergenic |
| CACAAACAGCATGGTGCATG+AGG | 0.572207 | 7.2:+85173239 | None:intergenic |
| AACATCCTCACCTCCAACGA+AGG | 0.576742 | 7.2:-85175992 | MS.gene057539:CDS |
| GACAATCGCCATGTAAGCAT+GGG | 0.576984 | 7.2:-85173997 | MS.gene057539:CDS |
| TCGAATTGCAACGACTCATG+TGG | 0.580175 | 7.2:-85173899 | MS.gene057539:CDS |
| TTCATCACCAACCTCAACCT+CGG | 0.582452 | 7.2:-85175934 | MS.gene057539:CDS |
| GAGAGTGGTGACACCTTCGT+TGG | 0.587290 | 7.2:+85175979 | None:intergenic |
| ATCGAAAACTGTCAAGGTAA+GGG | 0.588501 | 7.2:+85175906 | None:intergenic |
| AACAGCGGCGGTTTGTGGTG+TGG | 0.588676 | 7.2:+85176039 | None:intergenic |
| ACTGCAGTATTCCAATGAAA+GGG | 0.590576 | 7.2:-85173300 | MS.gene057539:CDS |
| CGTTGGAGGTGAGGATGTTG+TGG | 0.591361 | 7.2:+85175996 | None:intergenic |
| CGAATTGCAACGACTCATGT+GGG | 0.591975 | 7.2:-85173898 | MS.gene057539:CDS |
| ATGTATTTCTGAAACGAGGA+AGG | 0.595398 | 7.2:-85175831 | MS.gene057539:CDS |
| TCGCCATGTAAGCATGGGTG+CGG | 0.596200 | 7.2:-85173992 | MS.gene057539:CDS |
| GGAGGTGAGGATGTTGTGGA+TGG | 0.597992 | 7.2:+85176000 | None:intergenic |
| TCATTTGCAGGGCCGTCATG+GGG | 0.599806 | 7.2:-85172843 | MS.gene057539:intron |
| CGAAGATCATGCAAAGCGCA+AGG | 0.602561 | 7.2:-85172744 | MS.gene057539:CDS |
| TGAACTTTGGGACTCTACAA+AGG | 0.604689 | 7.2:-85173953 | MS.gene057539:CDS |
| TTGCAGGGGTATTAGTGACG+AGG | 0.607935 | 7.2:-85173344 | MS.gene057539:intron |
| TATTCCAATGAAAGGGATGG+TGG | 0.609611 | 7.2:-85173293 | MS.gene057539:CDS |
| GGTTGAGGTTGGTGATGAAG+TGG | 0.610751 | 7.2:+85175938 | None:intergenic |
| ATAGGTTTCTATCTATGACA+TGG | 0.614220 | 7.2:-85173710 | MS.gene057539:intron |
| TGACACCTTCGTTGGAGGTG+AGG | 0.618181 | 7.2:+85175987 | None:intergenic |
| GGAACCACCGAGGTTGAGGT+TGG | 0.619938 | 7.2:+85175927 | None:intergenic |
| TTTCGCATCGAAAACTGTCA+AGG | 0.621423 | 7.2:+85175900 | None:intergenic |
| GTCGTTTGGTTGAGGAACAG+CGG | 0.621945 | 7.2:+85176024 | None:intergenic |
| CAGTATTCCAATGAAAGGGA+TGG | 0.627284 | 7.2:-85173296 | MS.gene057539:CDS |
| AGTGGTGACACCTTCGTTGG+AGG | 0.636336 | 7.2:+85175982 | None:intergenic |
| CGGAGAGAAGGAGAGAGAGA+GGG | 0.637659 | 7.2:+85176094 | None:intergenic |
| GGCCATGTATTTCTGAAACG+AGG | 0.642605 | 7.2:-85175835 | MS.gene057539:CDS |
| ATCGTGAGGTGGATTTGTGG+CGG | 0.647314 | 7.2:+85176071 | None:intergenic |
| GAAGGAGAGATTTGGAAAAG+CGG | 0.653862 | 7.2:-85175813 | MS.gene057539:CDS |
| GGTGTAGCAGCATCGTGAGG+TGG | 0.661775 | 7.2:+85176060 | None:intergenic |
| TCGATGCGAAAATGGTTGCG+AGG | 0.667934 | 7.2:-85175888 | MS.gene057539:CDS |
| AAATCCTATCACAAACAGCA+TGG | 0.670020 | 7.2:+85173230 | None:intergenic |
| CAACTGTCAAATCCCCATGA+CGG | 0.678751 | 7.2:+85172831 | None:intergenic |
| ATCACCAACCTCAACCTCGG+TGG | 0.680264 | 7.2:-85175931 | MS.gene057539:CDS |
| GACTCATGTGGGAATCGATG+CGG | 0.703307 | 7.2:-85173887 | MS.gene057539:intron |
| AGAGAGTGATGAACACAACA+TGG | 0.703852 | 7.2:+85176135 | None:intergenic |
| TTTGAAATGTTGAAATCACG+TGG | 0.705619 | 7.2:-85173925 | MS.gene057539:CDS |
| GTTTGGTTGAGGAACAGCGG+CGG | 0.722598 | 7.2:+85176027 | None:intergenic |
| TGTGGTGTAGCAGCATCGTG+AGG | 0.726344 | 7.2:+85176057 | None:intergenic |
| TCAAGGTAAGGGAACCACCG+AGG | 0.756098 | 7.2:+85175917 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCATATAAATTCTAA+GGG | - | chr7.2:85174489-85174508 | MS.gene057539:intron | 10.0% |
| !! | GTAACTTATAATAATTATAA+AGG | - | chr7.2:85174579-85174598 | MS.gene057539:intron | 10.0% |
| !!! | ATAGTTCTATAATTTATATT+TGG | - | chr7.2:85175965-85175984 | MS.gene057539:CDS | 10.0% |
| !!! | TTAATTTTATATACTTTATG+TGG | - | chr7.2:85175688-85175707 | MS.gene057539:CDS | 10.0% |
| !! | GATAATTCATATAAATTCTA+AGG | - | chr7.2:85174488-85174507 | MS.gene057539:intron | 15.0% |
| !!! | ATATTGAAATATTGATAATG+TGG | - | chr7.2:85174017-85174036 | MS.gene057539:intron | 15.0% |
| !!! | GGATTGTTATTATTAAAATA+AGG | + | chr7.2:85175833-85175852 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTATATTTAAC+CGG | - | chr7.2:85175498-85175517 | MS.gene057539:intron | 15.0% |
| !! | ACGATTTCAATTATTAACTT+GGG | - | chr7.2:85174061-85174080 | MS.gene057539:intron | 20.0% |
| !! | ATTATATATTTCCTTAGTGT+TGG | - | chr7.2:85175345-85175364 | MS.gene057539:intron | 20.0% |
| !! | CTTTGAATAACCAAAAAATA+AGG | + | chr7.2:85175900-85175919 | None:intergenic | 20.0% |
| !! | GATAATATAAGAATAGAGTA+GGG | + | chr7.2:85174268-85174287 | None:intergenic | 20.0% |
| !! | GCAACTAATAATTTATCTTA+TGG | + | chr7.2:85173489-85173508 | None:intergenic | 20.0% |
| !! | TACGATTTCAATTATTAACT+TGG | - | chr7.2:85174060-85174079 | MS.gene057539:intron | 20.0% |
| !! | TCTTAAAGTTCTATACATAT+TGG | - | chr7.2:85175788-85175807 | MS.gene057539:CDS | 20.0% |
| !! | TGATAATATAAGAATAGAGT+AGG | + | chr7.2:85174269-85174288 | None:intergenic | 20.0% |
| !!! | ATGAATTATCGATTAAAAGA+TGG | + | chr7.2:85174478-85174497 | None:intergenic | 20.0% |
| !!! | ATTTATCTTATGGTTTTTCT+AGG | + | chr7.2:85173479-85173498 | None:intergenic | 20.0% |
| !!! | TGAATTATCGATTAAAAGAT+GGG | + | chr7.2:85174477-85174496 | None:intergenic | 20.0% |
| !!! | TGATATTAAGTTGGTAATAT+CGG | - | chr7.2:85173894-85173913 | MS.gene057539:CDS | 20.0% |
| !!! | TTCAATTTATTGCGTTTTTT+TGG | - | chr7.2:85173283-85173302 | MS.gene057539:CDS | 20.0% |
| ! | AACATTAGTTAGTGTAATTG+AGG | - | chr7.2:85174420-85174439 | MS.gene057539:intron | 25.0% |
| ! | AAGTAATTGAATATCCTAAC+TGG | - | chr7.2:85173749-85173768 | MS.gene057539:intron | 25.0% |
| ! | AGACTAGAATGATATTAAGT+TGG | - | chr7.2:85173885-85173904 | MS.gene057539:intron | 25.0% |
| ! | AGATAAATTATTAGTTGCTG+AGG | - | chr7.2:85173491-85173510 | MS.gene057539:intron | 25.0% |
| ! | CTCTATTCTTATATTATCAG+TGG | - | chr7.2:85174270-85174289 | MS.gene057539:intron | 25.0% |
| ! | CTTTATGAACTCATTGAATT+AGG | - | chr7.2:85173719-85173738 | MS.gene057539:intron | 25.0% |
| ! | GAATAACCAAAAAATAAGGT+GGG | + | chr7.2:85175896-85175915 | None:intergenic | 25.0% |
| ! | TATGTAGCATTATTCAAGAA+GGG | + | chr7.2:85174716-85174735 | None:intergenic | 25.0% |
| ! | TGAATAACCAAAAAATAAGG+TGG | + | chr7.2:85175897-85175916 | None:intergenic | 25.0% |
| ! | TGGAGTTAGTTAAAATTAGT+AGG | - | chr7.2:85174368-85174387 | MS.gene057539:intron | 25.0% |
| ! | TTATGTAGCATTATTCAAGA+AGG | + | chr7.2:85174717-85174736 | None:intergenic | 25.0% |
| !! | AACAAAATTTTCTACAGTAG+AGG | + | chr7.2:85174199-85174218 | None:intergenic | 25.0% |
| !! | TGTTAGCTTAACTTCATTTA+TGG | + | chr7.2:85174652-85174671 | None:intergenic | 25.0% |
| !! | TGTTCTATTTCTTGTAACTT+GGG | - | chr7.2:85175464-85175483 | MS.gene057539:intron | 25.0% |
| !! | TTAAAATTAGTAGGTTAGTC+AGG | - | chr7.2:85174377-85174396 | MS.gene057539:intron | 25.0% |
| !! | TTAGTTGCTGTTCATAAAAT+AGG | - | chr7.2:85174084-85174103 | MS.gene057539:intron | 25.0% |
| !!! | ATATTGATAATGTGGAGAAT+TGG | - | chr7.2:85174025-85174044 | MS.gene057539:intron | 25.0% |
| AATGGTTAGACATTGAACTT+TGG | - | chr7.2:85174912-85174931 | MS.gene057539:intron | 30.0% | |
| AGCACTTATAGTAGAAAAGA+CGG | - | chr7.2:85173343-85173362 | MS.gene057539:intron | 30.0% | |
| ATAGGTTTCTATCTATGACA+TGG | - | chr7.2:85175168-85175187 | MS.gene057539:intron | 30.0% | |
| ATGAACTTCATATGAGAAGT+AGG | + | chr7.2:85174541-85174560 | None:intergenic | 30.0% | |
| ATGCATCAATACATGATTAC+AGG | + | chr7.2:85175071-85175090 | None:intergenic | 30.0% | |
| ATGGTTAGACATTGAACTTT+GGG | - | chr7.2:85174913-85174932 | MS.gene057539:intron | 30.0% | |
| CAATAAAAAGCTCATGAGAT+TGG | + | chr7.2:85174746-85174765 | None:intergenic | 30.0% | |
| GAAAATCCACATATGTCATA+CGG | - | chr7.2:85175116-85175135 | MS.gene057539:intron | 30.0% | |
| GTGATTATTGTTAAGACAGT+TGG | - | chr7.2:85174348-85174367 | MS.gene057539:intron | 30.0% | |
| GTTGAGGTGAAATTTGATAA+TGG | - | chr7.2:85173238-85173257 | MS.gene057539:CDS | 30.0% | |
| TAACTGGTGCTTGAATTTAT+AGG | - | chr7.2:85173765-85173784 | MS.gene057539:intron | 30.0% | |
| TATAAATTCAAGCACCAGTT+AGG | + | chr7.2:85173766-85173785 | None:intergenic | 30.0% | |
| TGAAGAAAGACAAATTCTAC+TGG | - | chr7.2:85176068-85176087 | MS.gene057539:CDS | 30.0% | |
| TGCATCAATACATGATTACA+GGG | + | chr7.2:85175070-85175089 | None:intergenic | 30.0% | |
| TGCGTTTGATATTAGATAGA+TGG | - | chr7.2:85173952-85173971 | MS.gene057539:CDS | 30.0% | |
| TTTCATCTGATGCTAACAAA+AGG | - | chr7.2:85173202-85173221 | MS.gene057539:intron | 30.0% | |
| ! | CTGTTCTATTTCTTGTAACT+TGG | - | chr7.2:85175463-85175482 | MS.gene057539:intron | 30.0% |
| ! | TAATTTTCACGTCATTTGCA+GGG | - | chr7.2:85176024-85176043 | MS.gene057539:CDS | 30.0% |
| ! | TTACAATTCTAGCGACTTTT+TGG | - | chr7.2:85173993-85174012 | MS.gene057539:CDS | 30.0% |
| ! | TTTGAAATGTTGAAATCACG+TGG | - | chr7.2:85174953-85174972 | MS.gene057539:intron | 30.0% |
| !! | AATGTTTGTCTTGTTGTTGA+AGG | - | chr7.2:85173105-85173124 | MS.gene057539:intron | 30.0% |
| !! | ATGTTTGTCTTGTTGTTGAA+GGG | - | chr7.2:85173106-85173125 | MS.gene057539:intron | 30.0% |
| !! | GCATCTTCAAAAGTATTACA+TGG | + | chr7.2:85175403-85175422 | None:intergenic | 30.0% |
| !! | GTGTGATTTTGGAAATGTTT+CGG | - | chr7.2:85173131-85173150 | MS.gene057539:intron | 30.0% |
| !! | TTTGTTGTTGTTGTTGTAGA+CGG | - | chr7.2:85173578-85173597 | MS.gene057539:intron | 30.0% |
| !!! | GACTTTTTCTTGCTGTTTAT+AGG | - | chr7.2:85175150-85175169 | MS.gene057539:intron | 30.0% |
| !!! | GTTATTCCCACCTTATTTTT+TGG | - | chr7.2:85175887-85175906 | MS.gene057539:CDS | 30.0% |
| AAAACTAGGTTTAGGTGGTT+TGG | - | chr7.2:85173368-85173387 | MS.gene057539:intron | 35.0% | |
| AAACTAGGTTTAGGTGGTTT+GGG | - | chr7.2:85173369-85173388 | MS.gene057539:intron | 35.0% | |
| AAATAAGGTGGGAATAACCA+TGG | + | chr7.2:85175885-85175904 | None:intergenic | 35.0% | |
| AAATCCTATCACAAACAGCA+TGG | + | chr7.2:85175651-85175670 | None:intergenic | 35.0% | |
| AAGACAAGCGACATATATGA+AGG | + | chr7.2:85175244-85175263 | None:intergenic | 35.0% | |
| AATGAAATCACCTTAACCTC+AGG | - | chr7.2:85174130-85174149 | MS.gene057539:intron | 35.0% | |
| ACTGCAGTATTCCAATGAAA+GGG | - | chr7.2:85175578-85175597 | MS.gene057539:intron | 35.0% | |
| ACTTCATTTATGGCTGAGAA+TGG | + | chr7.2:85174642-85174661 | None:intergenic | 35.0% | |
| AGTCTAGTTGTTCACATCAT+CGG | - | chr7.2:85173796-85173815 | MS.gene057539:intron | 35.0% | |
| AGTGACAATATTAGAGGAGT+TGG | - | chr7.2:85173317-85173336 | MS.gene057539:CDS | 35.0% | |
| ATACACAGCAGTATAGTGAT+TGG | + | chr7.2:85175854-85175873 | None:intergenic | 35.0% | |
| ATATGAGAAGTAGGCTTGAT+AGG | + | chr7.2:85174532-85174551 | None:intergenic | 35.0% | |
| ATCGAAAACTGTCAAGGTAA+GGG | + | chr7.2:85172975-85172994 | None:intergenic | 35.0% | |
| ATGAAATCACCTTAACCTCA+GGG | - | chr7.2:85174131-85174150 | MS.gene057539:intron | 35.0% | |
| ATGTAACCACGGAAAATGTT+TGG | - | chr7.2:85173663-85173682 | MS.gene057539:intron | 35.0% | |
| CGATTAAAAGATGGGTAATG+AGG | + | chr7.2:85174469-85174488 | None:intergenic | 35.0% | |
| CTGAAGTTATTGAAGCTGTT+GGG | - | chr7.2:85173022-85173041 | MS.gene057539:intron | 35.0% | |
| CTGCAAAAAGAACATAACAC+CGG | + | chr7.2:85175520-85175539 | None:intergenic | 35.0% | |
| TAGAAAAGACGGTGAAAACT+AGG | - | chr7.2:85173354-85173373 | MS.gene057539:intron | 35.0% | |
| TCAGGTATGGTTAGTAGAAT+TGG | - | chr7.2:85174395-85174414 | MS.gene057539:intron | 35.0% | |
| TTCCTCGTTTCAGAAATACA+TGG | + | chr7.2:85173048-85173067 | None:intergenic | 35.0% | |
| TTTCTATCTATGACATGGAC+TGG | - | chr7.2:85175173-85175192 | MS.gene057539:intron | 35.0% | |
| ! | AAAGCCTTATCCCACTAAAT+GGG | + | chr7.2:85173561-85173580 | None:intergenic | 35.0% |
| ! | AACATTTTCCGTGGTTACAT+AGG | + | chr7.2:85173663-85173682 | None:intergenic | 35.0% |
| ! | AGGTGTTTACATTGTTGTTG+AGG | - | chr7.2:85173222-85173241 | MS.gene057539:CDS | 35.0% |
| ! | ATGTGAGCTTGTTTGTATGT+TGG | - | chr7.2:85175425-85175444 | MS.gene057539:intron | 35.0% |
| ! | ATTAGTAGGTTAGTCAGGTA+TGG | - | chr7.2:85174382-85174401 | MS.gene057539:intron | 35.0% |
| ! | GTAATTTTCACGTCATTTGC+AGG | - | chr7.2:85176023-85176042 | MS.gene057539:CDS | 35.0% |
| ! | GTGTTATGTTCTTTTTGCAG+GGG | - | chr7.2:85175520-85175539 | MS.gene057539:intron | 35.0% |
| ! | TCTGAAGTTATTGAAGCTGT+TGG | - | chr7.2:85173021-85173040 | MS.gene057539:intron | 35.0% |
| ! | TGGTTTTTCTGCATCTCATT+TGG | - | chr7.2:85175985-85176004 | MS.gene057539:CDS | 35.0% |
| !! | ATGTATTTCTGAAACGAGGA+AGG | - | chr7.2:85173047-85173066 | MS.gene057539:intron | 35.0% |
| !! | GGTGTTATGTTCTTTTTGCA+GGG | - | chr7.2:85175519-85175538 | MS.gene057539:intron | 35.0% |
| !! | TATCAAAAGCACCAACACTA+AGG | + | chr7.2:85175359-85175378 | None:intergenic | 35.0% |
| !! | TGATTTTGGAAATGTTTCGG+CGG | - | chr7.2:85173134-85173153 | MS.gene057539:intron | 35.0% |
| !!! | GCGTTTTTTTGGTTTGTAGA+CGG | - | chr7.2:85173294-85173313 | MS.gene057539:CDS | 35.0% |
| AAACTCACACACACACACAA+AGG | - | chr7.2:85173619-85173638 | MS.gene057539:intron | 40.0% | |
| AACTCACACACACACACAAA+GGG | - | chr7.2:85173620-85173639 | MS.gene057539:intron | 40.0% | |
| ACACACAAAGGGGATATCTT+GGG | - | chr7.2:85173631-85173650 | MS.gene057539:intron | 40.0% | |
| ACATAGAAACAACGCTTTGC+TGG | - | chr7.2:85175744-85175763 | MS.gene057539:CDS | 40.0% | |
| AGACGGAGTGACAATATTAG+AGG | - | chr7.2:85173311-85173330 | MS.gene057539:CDS | 40.0% | |
| AGACGGTGAAAACTAGGTTT+AGG | - | chr7.2:85173360-85173379 | MS.gene057539:intron | 40.0% | |
| AGAGAGTGATGAACACAACA+TGG | + | chr7.2:85172746-85172765 | None:intergenic | 40.0% | |
| AGAGGGTTTGAATTTGAAGG+TGG | + | chr7.2:85172770-85172789 | None:intergenic | 40.0% | |
| AGGGTGTGAATATCTTATGG+CGG | - | chr7.2:85174150-85174169 | MS.gene057539:intron | 40.0% | |
| AGTCAAATTCGTCCTTCTGT+TGG | - | chr7.2:85173853-85173872 | MS.gene057539:intron | 40.0% | |
| ATACCTGTGACAAGCAAACT+AGG | + | chr7.2:85174858-85174877 | None:intergenic | 40.0% | |
| ATATTCACACCCTGAGGTTA+AGG | + | chr7.2:85174143-85174162 | None:intergenic | 40.0% | |
| ATGGGTAATGAGGACATGTA+TGG | + | chr7.2:85174459-85174478 | None:intergenic | 40.0% | |
| CACTGCAGTATTCCAATGAA+AGG | - | chr7.2:85175577-85175596 | MS.gene057539:intron | 40.0% | |
| CAGTATTCCAATGAAAGGGA+TGG | - | chr7.2:85175582-85175601 | MS.gene057539:intron | 40.0% | |
| CATAAGATATTCACACCCTG+AGG | + | chr7.2:85174149-85174168 | None:intergenic | 40.0% | |
| CATCGAAAACTGTCAAGGTA+AGG | + | chr7.2:85172976-85172995 | None:intergenic | 40.0% | |
| CTCAGGGTGTGAATATCTTA+TGG | - | chr7.2:85174147-85174166 | MS.gene057539:intron | 40.0% | |
| GAAGGAGAGATTTGGAAAAG+CGG | - | chr7.2:85173065-85173084 | MS.gene057539:intron | 40.0% | |
| GAGAGAGGGTTTGAATTTGA+AGG | + | chr7.2:85172773-85172792 | None:intergenic | 40.0% | |
| GGAGTATAGTCAGATCACTA+GGG | - | chr7.2:85173442-85173461 | MS.gene057539:intron | 40.0% | |
| GTTTGCTTGTCACAGGTATA+AGG | - | chr7.2:85174859-85174878 | MS.gene057539:intron | 40.0% | |
| TAGTAGTCGGGAACGAAAAT+AGG | - | chr7.2:85175212-85175231 | MS.gene057539:intron | 40.0% | |
| TATTCCAATGAAAGGGATGG+TGG | - | chr7.2:85175585-85175604 | MS.gene057539:intron | 40.0% | |
| TCTCTGCAAATACCAACAGA+AGG | + | chr7.2:85173868-85173887 | None:intergenic | 40.0% | |
| TGGAGTATAGTCAGATCACT+AGG | - | chr7.2:85173441-85173460 | MS.gene057539:intron | 40.0% | |
| TGTCCAACTGCAATAGTAGT+CGG | - | chr7.2:85175199-85175218 | MS.gene057539:intron | 40.0% | |
| TGTTTGTATCAGTGCATCGT+TGG | - | chr7.2:85174313-85174332 | MS.gene057539:intron | 40.0% | |
| TTCAATGTTTCAGTTGCTGC+AGG | - | chr7.2:85175613-85175632 | MS.gene057539:intron | 40.0% | |
| TTCATAAAGCCTAGCTCAAC+TGG | + | chr7.2:85173708-85173727 | None:intergenic | 40.0% | |
| TTTCGCATCGAAAACTGTCA+AGG | + | chr7.2:85172981-85173000 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCCACTAAATG+GGG | + | chr7.2:85173560-85173579 | None:intergenic | 40.0% |
| ! | ACATGAAGCACTAACACTTC+AGG | - | chr7.2:85174224-85174243 | MS.gene057539:intron | 40.0% |
| ! | AGCTATGAGAGTGTATCAGA+TGG | - | chr7.2:85173421-85173440 | MS.gene057539:intron | 40.0% |
| ! | CAAAGCCTTATCCCACTAAA+TGG | + | chr7.2:85173562-85173581 | None:intergenic | 40.0% |
| ! | GACAGTTTTCGATGCGAAAA+TGG | - | chr7.2:85172982-85173001 | MS.gene057539:intron | 40.0% |
| ! | GCATCGTTGGTTATTATTGC+TGG | - | chr7.2:85174326-85174345 | MS.gene057539:intron | 40.0% |
| ! | GTTGAAGGGTTGTGTGATTT+TGG | - | chr7.2:85173120-85173139 | MS.gene057539:intron | 40.0% |
| ! | TCGTTGCATTTTCATGAGAG+TGG | + | chr7.2:85172917-85172936 | None:intergenic | 40.0% |
| !! | GTGTTGGTGCTTTTGATATG+CGG | - | chr7.2:85175361-85175380 | MS.gene057539:intron | 40.0% |
| !! | TAACCTAGTTTGCTTGTCAC+AGG | - | chr7.2:85174852-85174871 | MS.gene057539:intron | 40.0% |
| !! | TGAACTTTGGGACTCTACAA+AGG | - | chr7.2:85174925-85174944 | MS.gene057539:intron | 40.0% |
| !!! | CGGTGTTATGTTCTTTTTGC+AGG | - | chr7.2:85175518-85175537 | MS.gene057539:intron | 40.0% |
| ACTCACACACACACACAAAG+GGG | - | chr7.2:85173621-85173640 | MS.gene057539:intron | 45.0% | |
| CAACTGTCAAATCCCCATGA+CGG | + | chr7.2:85176050-85176069 | None:intergenic | 45.0% | |
| CACACACAAAGGGGATATCT+TGG | - | chr7.2:85173630-85173649 | MS.gene057539:intron | 45.0% | |
| CGAATTGCAACGACTCATGT+GGG | - | chr7.2:85174980-85174999 | MS.gene057539:intron | 45.0% | |
| CGGTGAAAACTAGGTTTAGG+TGG | - | chr7.2:85173363-85173382 | MS.gene057539:intron | 45.0% | |
| CTGGCAATGCTGAGATTGTT+AGG | + | chr7.2:85173689-85173708 | None:intergenic | 45.0% | |
| CTTATCCCACTAAATGGGGT+CGG | + | chr7.2:85173556-85173575 | None:intergenic | 45.0% | |
| GAAACGAGGAAGGAGAGATT+TGG | - | chr7.2:85173057-85173076 | MS.gene057539:intron | 45.0% | |
| GACAATCGCCATGTAAGCAT+GGG | - | chr7.2:85174881-85174900 | MS.gene057539:intron | 45.0% | |
| GACTACTATTGCAGTTGGAC+AGG | + | chr7.2:85175200-85175219 | None:intergenic | 45.0% | |
| GCTGTGTATTCTTTCCTCCA+TGG | - | chr7.2:85175865-85175884 | MS.gene057539:CDS | 45.0% | |
| GCTTCACCGTATGACATATG+TGG | + | chr7.2:85175125-85175144 | None:intergenic | 45.0% | |
| GGTTTGAGCCTATGTAACCA+CGG | - | chr7.2:85173652-85173671 | MS.gene057539:intron | 45.0% | |
| GTCCAACTGCAATAGTAGTC+GGG | - | chr7.2:85175200-85175219 | MS.gene057539:intron | 45.0% | |
| TAAGGTGGGAATAACCATGG+AGG | + | chr7.2:85175882-85175901 | None:intergenic | 45.0% | |
| TCGAATTGCAACGACTCATG+TGG | - | chr7.2:85174979-85174998 | MS.gene057539:intron | 45.0% | |
| TTCATCACCAACCTCAACCT+CGG | - | chr7.2:85172944-85172963 | MS.gene057539:intron | 45.0% | |
| TTCCCGACTACTATTGCAGT+TGG | + | chr7.2:85175205-85175224 | None:intergenic | 45.0% | |
| ! | GAAATGTTTCGGCGGCTTTT+CGG | - | chr7.2:85173142-85173161 | MS.gene057539:intron | 45.0% |
| ! | GTGTGTGTGTGAGTTTTCAG+CGG | + | chr7.2:85173615-85173634 | None:intergenic | 45.0% |
| ! | GTTAGGCCAAACATTTTCCG+TGG | + | chr7.2:85173672-85173691 | None:intergenic | 45.0% |
| ! | TGCACCATGCTGTTTGTGAT+AGG | - | chr7.2:85175644-85175663 | MS.gene057539:intron | 45.0% |
| ! | TGGTGCTTTTGATATGCGGT+TGG | - | chr7.2:85175365-85175384 | MS.gene057539:intron | 45.0% |
| !! | ATGTTGTGGATGGTGTCGTT+TGG | + | chr7.2:85172871-85172890 | None:intergenic | 45.0% |
| !! | GCACTAACACTTCAGGTTGA+AGG | - | chr7.2:85174231-85174250 | MS.gene057539:intron | 45.0% |
| !! | GGCCATGTATTTCTGAAACG+AGG | - | chr7.2:85173043-85173062 | MS.gene057539:intron | 45.0% |
| !! | TAACTTATAATAATTATAAA+GGG | - | chr7.2:85174580-85174599 | MS.gene057539:intron | 5.0% |
| AACATCCTCACCTCCAACGA+AGG | - | chr7.2:85172886-85172905 | MS.gene057539:intron | 50.0% | |
| ATGAAGCCGACCCCATTTAG+TGG | - | chr7.2:85173547-85173566 | MS.gene057539:intron | 50.0% | |
| CACAAACAGCATGGTGCATG+AGG | + | chr7.2:85175642-85175661 | None:intergenic | 50.0% | |
| CGAAGATCATGCAAAGCGCA+AGG | - | chr7.2:85176134-85176153 | MS.gene057539:CDS | 50.0% | |
| CGACCCCATTTAGTGGGATA+AGG | - | chr7.2:85173554-85173573 | MS.gene057539:intron | 50.0% | |
| GACTCATGTGGGAATCGATG+CGG | - | chr7.2:85174991-85175010 | MS.gene057539:intron | 50.0% | |
| GAGTCCACCATCCCTTTCAT+TGG | + | chr7.2:85175592-85175611 | None:intergenic | 50.0% | |
| GGACAATCGCCATGTAAGCA+TGG | - | chr7.2:85174880-85174899 | MS.gene057539:intron | 50.0% | |
| GGGTATTAGTGACGAGGCTT+TGG | - | chr7.2:85175540-85175559 | MS.gene057539:intron | 50.0% | |
| GTCGTTTGGTTGAGGAACAG+CGG | + | chr7.2:85172857-85172876 | None:intergenic | 50.0% | |
| GTTGCTGAGGAGTTGCATTG+AGG | - | chr7.2:85173504-85173523 | MS.gene057539:intron | 50.0% | |
| TAAGCATGGGTGCGGAGAAA+TGG | - | chr7.2:85174894-85174913 | MS.gene057539:intron | 50.0% | |
| TCAGCATTGCCAGTTGAGCT+AGG | - | chr7.2:85173696-85173715 | MS.gene057539:CDS | 50.0% | |
| TCGATGCGAAAATGGTTGCG+AGG | - | chr7.2:85172990-85173009 | MS.gene057539:intron | 50.0% | |
| TGAAGCCGACCCCATTTAGT+GGG | - | chr7.2:85173548-85173567 | MS.gene057539:intron | 50.0% | |
| TTTCGGTCTGCTGATGCTCT+TGG | - | chr7.2:85173159-85173178 | MS.gene057539:intron | 50.0% | |
| ! | AGCATCGTGAGGTGGATTTG+TGG | + | chr7.2:85172813-85172832 | None:intergenic | 50.0% |
| ! | ATCGTGAGGTGGATTTGTGG+CGG | + | chr7.2:85172810-85172829 | None:intergenic | 50.0% |
| !! | CTTCAGGTTGAAGGCATGTC+TGG | - | chr7.2:85174240-85174259 | MS.gene057539:intron | 50.0% |
| !! | GGTTGAGGTTGGTGATGAAG+TGG | + | chr7.2:85172943-85172962 | None:intergenic | 50.0% |
| !! | TGGATGGTGTCGTTTGGTTG+AGG | + | chr7.2:85172865-85172884 | None:intergenic | 50.0% |
| !! | TTGCAGGGGTATTAGTGACG+AGG | - | chr7.2:85175534-85175553 | MS.gene057539:intron | 50.0% |
| AGTGGTGACACCTTCGTTGG+AGG | + | chr7.2:85172899-85172918 | None:intergenic | 55.0% | |
| ATCACCAACCTCAACCTCGG+TGG | - | chr7.2:85172947-85172966 | MS.gene057539:intron | 55.0% | |
| CGGAGAGAAGGAGAGAGAGA+GGG | + | chr7.2:85172787-85172806 | None:intergenic | 55.0% | |
| CGTTGGAGGTGAGGATGTTG+TGG | + | chr7.2:85172885-85172904 | None:intergenic | 55.0% | |
| GAGAGTGGTGACACCTTCGT+TGG | + | chr7.2:85172902-85172921 | None:intergenic | 55.0% | |
| GGAGGTGAGGATGTTGTGGA+TGG | + | chr7.2:85172881-85172900 | None:intergenic | 55.0% | |
| GTCATTTGCAGGGCCGTCAT+GGG | - | chr7.2:85176034-85176053 | MS.gene057539:CDS | 55.0% | |
| GTTTGGTTGAGGAACAGCGG+CGG | + | chr7.2:85172854-85172873 | None:intergenic | 55.0% | |
| TAAGGGAACCACCGAGGTTG+AGG | + | chr7.2:85172958-85172977 | None:intergenic | 55.0% | |
| TCAAGGTAAGGGAACCACCG+AGG | + | chr7.2:85172964-85172983 | None:intergenic | 55.0% | |
| TCATTTGCAGGGCCGTCATG+GGG | - | chr7.2:85176035-85176054 | MS.gene057539:CDS | 55.0% | |
| TCGCCATGTAAGCATGGGTG+CGG | - | chr7.2:85174886-85174905 | MS.gene057539:intron | 55.0% | |
| TCTCCGCACCCATGCTTACA+TGG | + | chr7.2:85174892-85174911 | None:intergenic | 55.0% | |
| TGACACCTTCGTTGGAGGTG+AGG | + | chr7.2:85172894-85172913 | None:intergenic | 55.0% | |
| TGTGGTGTAGCAGCATCGTG+AGG | + | chr7.2:85172824-85172843 | None:intergenic | 55.0% | |
| AACAGCGGCGGTTTGTGGTG+TGG | + | chr7.2:85172842-85172861 | None:intergenic | 60.0% | |
| CGTCATTTGCAGGGCCGTCA+TGG | - | chr7.2:85176033-85176052 | MS.gene057539:CDS | 60.0% | |
| GATTTGTGGCGGCGGAGAGA+AGG | + | chr7.2:85172799-85172818 | None:intergenic | 60.0% | |
| GCGGAGAGAAGGAGAGAGAG+AGG | + | chr7.2:85172788-85172807 | None:intergenic | 60.0% | |
| GGAACCACCGAGGTTGAGGT+TGG | + | chr7.2:85172954-85172973 | None:intergenic | 60.0% | |
| GGTGTAGCAGCATCGTGAGG+TGG | + | chr7.2:85172821-85172840 | None:intergenic | 60.0% | |
| TGAGGAACAGCGGCGGTTTG+TGG | + | chr7.2:85172847-85172866 | None:intergenic | 60.0% | |
| ! | GTGAGGTGGATTTGTGGCGG+CGG | + | chr7.2:85172807-85172826 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 85172727 | 85176173 | 85172727 | ID=MS.gene057539 |
| chr7.2 | mRNA | 85172727 | 85176173 | 85172727 | ID=MS.gene057539.t1;Parent=MS.gene057539 |
| chr7.2 | exon | 85175677 | 85176173 | 85175677 | ID=MS.gene057539.t1.exon1;Parent=MS.gene057539.t1 |
| chr7.2 | CDS | 85175677 | 85176173 | 85175677 | ID=cds.MS.gene057539.t1;Parent=MS.gene057539.t1 |
| chr7.2 | exon | 85173888 | 85174026 | 85173888 | ID=MS.gene057539.t1.exon2;Parent=MS.gene057539.t1 |
| chr7.2 | CDS | 85173888 | 85174026 | 85173888 | ID=cds.MS.gene057539.t1;Parent=MS.gene057539.t1 |
| chr7.2 | exon | 85173667 | 85173728 | 85173667 | ID=MS.gene057539.t1.exon3;Parent=MS.gene057539.t1 |
| chr7.2 | CDS | 85173667 | 85173728 | 85173667 | ID=cds.MS.gene057539.t1;Parent=MS.gene057539.t1 |
| chr7.2 | exon | 85173222 | 85173360 | 85173222 | ID=MS.gene057539.t1.exon4;Parent=MS.gene057539.t1 |
| chr7.2 | CDS | 85173222 | 85173360 | 85173222 | ID=cds.MS.gene057539.t1;Parent=MS.gene057539.t1 |
| chr7.2 | exon | 85172727 | 85172855 | 85172727 | ID=MS.gene057539.t1.exon5;Parent=MS.gene057539.t1 |
| chr7.2 | CDS | 85172727 | 85172855 | 85172727 | ID=cds.MS.gene057539.t1;Parent=MS.gene057539.t1 |
| Gene Sequence |
| Protein sequence |
