AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93731


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93731.t1 MTR_1g037680 97.170 106 3 0 1 106 81 186 1.27e-72 214
MS.gene93731.t1 MTR_3g014240 95.833 72 3 0 1 72 76 147 4.22e-46 145
MS.gene93731.t1 MTR_1g114290 33.333 93 60 1 11 103 82 172 1.11e-13 63.5
MS.gene93731.t1 MTR_3g089065 30.682 88 59 1 17 104 86 171 2.77e-13 62.4
MS.gene93731.t1 MTR_2g079420 27.778 108 69 2 4 104 66 171 1.04e-11 58.5
MS.gene93731.t1 MTR_5g021180 40.580 69 39 2 11 78 23 90 2.48e-11 56.2
MS.gene93731.t1 MTR_1g098660 37.097 62 39 0 14 75 75 136 3.27e-11 57.0
MS.gene93731.t1 MTR_8g059015 29.070 86 59 1 19 104 91 174 6.34e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93731.t1 AT3G06730 91.509 106 9 0 1 106 78 183 5.47e-70 207
MS.gene93731.t1 AT1G50320 34.118 85 56 0 19 103 89 173 4.34e-13 62.4
MS.gene93731.t1 AT1G43560 32.955 88 57 1 19 106 78 163 1.84e-11 57.8
MS.gene93731.t1 AT3G15360 27.778 90 63 1 15 104 102 189 3.32e-11 57.4

Find 17 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTGGTCCATGCATCTTAA+TGG 0.366660 3.2:-7195729 MS.gene93731:CDS
TTTGATGTATTTCAGGTAAG+AGG 0.368265 3.2:-7191933 MS.gene93731:intron
GATCAGGACTAATAAAGAAT+AGG 0.400554 3.2:+7191901 None:intergenic
AATGGCTCAAGAACTTGAAA+TGG 0.441341 3.2:-7195711 MS.gene93731:intron
ATCAGGACTAATAAAGAATA+GGG 0.446630 3.2:+7191902 None:intergenic
ATATCTCTCATCATCTGTAT+TGG 0.448708 3.2:+7191843 None:intergenic
AAAGATGCTATTAGAACTGA+AGG 0.473614 3.2:-7191873 MS.gene93731:CDS
GCGTAGAAATCAATAATAAG+AGG 0.481926 3.2:+7195758 None:intergenic
TCTTGAGCCATTAAGATGCA+TGG 0.532979 3.2:+7195722 None:intergenic
TTGATGTATTTCAGGTAAGA+GGG 0.540490 3.2:-7191932 MS.gene93731:intron
TGAATTTGCACGCGACATGC+AGG 0.541865 3.2:-7192828 MS.gene93731:intron
GGACTAATAAAGAATAGGGT+AGG 0.548631 3.2:+7191906 None:intergenic
GATTTCTACGCGACATGGTG+TGG 0.564485 3.2:-7195746 MS.gene93731:CDS
TTATTGATTTCTACGCGACA+TGG 0.587417 3.2:-7195751 MS.gene93731:CDS
GAAATTCAAGAGCTTGTGAA+GGG 0.595327 3.2:-7195794 MS.gene93731:CDS
AGAAATTCAAGAGCTTGTGA+AGG 0.600875 3.2:-7195795 MS.gene93731:CDS
AAGATGCTATTAGAACTGAA+GGG 0.684088 3.2:-7191872 MS.gene93731:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATTATTGTAATAATAAT+TGG - chr3.2:7192486-7192505 MS.gene93731:intron 10.0%
!! AAAATAAGAGTTATTATTGT+TGG - chr3.2:7194980-7194999 MS.gene93731:intron 15.0%
!! AATAACTATTATACAAGTTA+TGG + chr3.2:7194402-7194421 None:intergenic 15.0%
!!! ATTGTATTTTTTTACAGTTT+TGG + chr3.2:7194195-7194214 None:intergenic 15.0%
!!! GTTATTAGTTTTATAGATTT+TGG - chr3.2:7192111-7192130 MS.gene93731:intron 15.0%
!! AAAAAAAAAAATCCTCTGTT+TGG - chr3.2:7192600-7192619 MS.gene93731:intron 20.0%
!! AAAATCAGTATGAAAGTAAT+TGG + chr3.2:7194564-7194583 None:intergenic 20.0%
!! AAATGTATTTCTTTCAATGA+TGG + chr3.2:7194452-7194471 None:intergenic 20.0%
!! AAATTACTTTGATTGTAAAC+TGG + chr3.2:7194348-7194367 None:intergenic 20.0%
!! AAATTTATTGAAGGTTACTA+CGG + chr3.2:7194723-7194742 None:intergenic 20.0%
!! AACATAAAATATGTAAAGCT+TGG + chr3.2:7194594-7194613 None:intergenic 20.0%
!! AATGAAAATGAGTATATAAG+TGG + chr3.2:7193123-7193142 None:intergenic 20.0%
!! ATATTGAATATTCTTTGAAC+AGG - chr3.2:7193895-7193914 MS.gene93731:intron 20.0%
!! ATGAAAATGAGTATATAAGT+GGG + chr3.2:7193122-7193141 None:intergenic 20.0%
!! ATTTATGATAGAACATTATG+GGG - chr3.2:7192742-7192761 MS.gene93731:intron 20.0%
!! CAAATTCGTGAAAAATAAAT+CGG - chr3.2:7194225-7194244 MS.gene93731:intron 20.0%
!! GATTTATGATAGAACATTAT+GGG - chr3.2:7192741-7192760 MS.gene93731:intron 20.0%
!! GGGTAATGTTTATAAAATTT+AGG - chr3.2:7195141-7195160 MS.gene93731:intron 20.0%
!! GTAAAAAAATACAATGTGTA+GGG - chr3.2:7194200-7194219 MS.gene93731:intron 20.0%
!! TAAAACTCCTTAAAATATTC+AGG - chr3.2:7192170-7192189 MS.gene93731:intron 20.0%
!! TGATTTATGATAGAACATTA+TGG - chr3.2:7192740-7192759 MS.gene93731:intron 20.0%
!! TGGATAAGCAATTAATTAAA+GGG - chr3.2:7192200-7192219 MS.gene93731:intron 20.0%
!! TGTAAAAAAATACAATGTGT+AGG - chr3.2:7194199-7194218 MS.gene93731:intron 20.0%
!! TTCTATCATAAATCATATTC+CGG + chr3.2:7192735-7192754 None:intergenic 20.0%
!! TTGCATTCTAAACTATATTT+AGG - chr3.2:7192860-7192879 MS.gene93731:CDS 20.0%
!! TTGGATAAGCAATTAATTAA+AGG - chr3.2:7192199-7192218 MS.gene93731:intron 20.0%
!!! AAATTTTATAAACATTACCC+AGG + chr3.2:7195141-7195160 None:intergenic 20.0%
!!! AGTTATAGAACTAACTTTTT+TGG + chr3.2:7194515-7194534 None:intergenic 20.0%
!!! ATAAACTTTTGATGTATTTC+AGG - chr3.2:7195696-7195715 MS.gene93731:intron 20.0%
!!! ATTTATGCATCATTTTGTTA+TGG - chr3.2:7194040-7194059 MS.gene93731:intron 20.0%
!!! GTTATAGAACTAACTTTTTT+GGG + chr3.2:7194514-7194533 None:intergenic 20.0%
!!! TACTCTTTATTTATCAACAT+TGG + chr3.2:7194685-7194704 None:intergenic 20.0%
!!! TTTTTTCCTCTAATCTTTTA+AGG + chr3.2:7194867-7194886 None:intergenic 20.0%
! AAAATTAAACTCTGCTAGTT+TGG + chr3.2:7192422-7192441 None:intergenic 25.0%
! AAACTAATAACGAACTAAAG+CGG + chr3.2:7192102-7192121 None:intergenic 25.0%
! AAGAAATACATTTGATGAAC+TGG - chr3.2:7194459-7194478 MS.gene93731:intron 25.0%
! AAGAATGATAATCTCAGTAA+AGG + chr3.2:7192052-7192071 None:intergenic 25.0%
! AATACTACATTCCATATTAC+AGG + chr3.2:7193571-7193590 None:intergenic 25.0%
! ACGTATAAACATGATTAAGA+TGG + chr3.2:7195616-7195635 None:intergenic 25.0%
! ACGTTTATTACACACATAAT+TGG - chr3.2:7195632-7195651 MS.gene93731:intron 25.0%
! AGGAAAAAAGAAACATATCA+TGG - chr3.2:7194878-7194897 MS.gene93731:intron 25.0%
! ATAAAATATGTAAAGCTTGG+TGG + chr3.2:7194591-7194610 None:intergenic 25.0%
! ATAAATACAGAATATTCCAC+AGG + chr3.2:7193832-7193851 None:intergenic 25.0%
! ATCAGGACTAATAAAGAATA+GGG + chr3.2:7195737-7195756 None:intergenic 25.0%
! ATTCATGGAAAATAGTATAC+AGG + chr3.2:7194117-7194136 None:intergenic 25.0%
! GATTATCCTTAAAAGATTAG+AGG - chr3.2:7194858-7194877 MS.gene93731:intron 25.0%
! GCAATTGTTAAAATAGATGT+TGG - chr3.2:7193760-7193779 MS.gene93731:intron 25.0%
! GTGGAATATTCTGTATTTAT+AGG - chr3.2:7193832-7193851 MS.gene93731:intron 25.0%
! TAAAATAGATGTTGGAATTC+TGG - chr3.2:7193768-7193787 MS.gene93731:intron 25.0%
! TATGACTACAAAAAACAAAG+TGG + chr3.2:7193651-7193670 None:intergenic 25.0%
! TCTCAAAATAAGTGTATAAG+CGG + chr3.2:7193333-7193352 None:intergenic 25.0%
! TGTTAATTTCTTAACTTTCG+AGG - chr3.2:7194610-7194629 MS.gene93731:intron 25.0%
! TTCAAATCTTGTAATTCCAA+GGG + chr3.2:7192997-7193016 None:intergenic 25.0%
! TTCATGGAAAATAGTATACA+GGG + chr3.2:7194116-7194135 None:intergenic 25.0%
! TTTGTAATCAGTAATTCCAA+GGG + chr3.2:7193026-7193045 None:intergenic 25.0%
!! AACAAGTCCTGAATATTTTA+AGG + chr3.2:7192180-7192199 None:intergenic 25.0%
!! CTCATTTTCATTTCTTATCT+TGG - chr3.2:7193131-7193150 MS.gene93731:intron 25.0%
!! TAAAATATTCAGGACTTGTT+TGG - chr3.2:7192180-7192199 MS.gene93731:intron 25.0%
!! TGGAATTACTGATTACAAAA+AGG - chr3.2:7193027-7193046 MS.gene93731:intron 25.0%
!! TGTGTTTTCATATGATATCT+TGG - chr3.2:7192259-7192278 MS.gene93731:intron 25.0%
!! TTCTGTATTTATAGGTTTTG+AGG - chr3.2:7193840-7193859 MS.gene93731:intron 25.0%
!! TTTTGTAATCAGTAATTCCA+AGG + chr3.2:7193027-7193046 None:intergenic 25.0%
!!! ACTTTGTTTTTTGTAGTCAT+AGG - chr3.2:7193650-7193669 MS.gene93731:intron 25.0%
!!! CAGTTTTTTAAGGTTAAGTT+AGG - chr3.2:7195373-7195392 MS.gene93731:intron 25.0%
!!! CGATTTATTTTTCACGAATT+TGG + chr3.2:7194227-7194246 None:intergenic 25.0%
!!! CGTGTTGTTTTTTACTAATA+GGG - chr3.2:7192954-7192973 MS.gene93731:intron 25.0%
!!! GTCAAAAAAGTATTCAACAA+AGG + chr3.2:7194427-7194446 None:intergenic 25.0%
!!! GTGTTGTTTTTTACTAATAG+GGG - chr3.2:7192955-7192974 MS.gene93731:intron 25.0%
!!! GTTCTAATAGCATCTTTTTT+TGG + chr3.2:7195760-7195779 None:intergenic 25.0%
!!! TAGATTTTGGATTCTGAAAT+TGG - chr3.2:7192124-7192143 MS.gene93731:intron 25.0%
!!! TCGTGTTGTTTTTTACTAAT+AGG - chr3.2:7192953-7192972 MS.gene93731:intron 25.0%
!!! TCTAGTGTTATTTAGAATGA+AGG + chr3.2:7194302-7194321 None:intergenic 25.0%
!!! TGTTGTTTTTTACTAATAGG+GGG - chr3.2:7192956-7192975 MS.gene93731:intron 25.0%
AAAATGAGTATATAAGTGGG+AGG + chr3.2:7193119-7193138 None:intergenic 30.0%
AAAGATGCTATTAGAACTGA+AGG - chr3.2:7195763-7195782 MS.gene93731:CDS 30.0%
AACTCACAATAAAACCAACT+AGG + chr3.2:7193971-7193990 None:intergenic 30.0%
AAGATGCTATTAGAACTGAA+GGG - chr3.2:7195764-7195783 MS.gene93731:CDS 30.0%
AAGCACTTGTGTGAATATTT+AGG + chr3.2:7192349-7192368 None:intergenic 30.0%
AAGCTGCACAAATTTATTGA+AGG + chr3.2:7194732-7194751 None:intergenic 30.0%
ACTTGTGTGAATATTTAGGA+GGG + chr3.2:7192345-7192364 None:intergenic 30.0%
ATAAAACCAACTAGGACTAA+TGG + chr3.2:7193963-7193982 None:intergenic 30.0%
ATATCTCTCATCATCTGTAT+TGG + chr3.2:7195796-7195815 None:intergenic 30.0%
CAAAGAATATTCAATATGCC+TGG + chr3.2:7193892-7193911 None:intergenic 30.0%
CAACAAAATGAGCTTAATTC+TGG - chr3.2:7193804-7193823 MS.gene93731:intron 30.0%
CATGATGATTATCAATGAGT+TGG - chr3.2:7192708-7192727 MS.gene93731:intron 30.0%
CTCAAAATAAGTGTATAAGC+GGG + chr3.2:7193332-7193351 None:intergenic 30.0%
GATCAGGACTAATAAAGAAT+AGG + chr3.2:7195738-7195757 None:intergenic 30.0%
GCGTAGAAATCAATAATAAG+AGG + chr3.2:7191881-7191900 None:intergenic 30.0%
GTTAATAATAGTTCACCAGA+TGG - chr3.2:7192146-7192165 MS.gene93731:intron 30.0%
GTTCAAATCTTGTAATTCCA+AGG + chr3.2:7192998-7193017 None:intergenic 30.0%
TGAAGTAACATAATAGATCC+AGG - chr3.2:7193871-7193890 MS.gene93731:intron 30.0%
TGTCAACTGAATTTACTTCT+AGG + chr3.2:7192445-7192464 None:intergenic 30.0%
TTCAGTTGACATTACAACAA+TGG - chr3.2:7192454-7192473 MS.gene93731:intron 30.0%
TTGTAATCAGTAATTCCAAG+GGG + chr3.2:7193025-7193044 None:intergenic 30.0%
TTTCTATTGTGCAATGCTTA+AGG + chr3.2:7193618-7193637 None:intergenic 30.0%
! AATTGGTAATTCTGAGGAAA+AGG + chr3.2:7194547-7194566 None:intergenic 30.0%
! AATTTGACTACTACGCTTTT+GGG - chr3.2:7194134-7194153 MS.gene93731:intron 30.0%
! GAAAGTAATTGGTAATTCTG+AGG + chr3.2:7194553-7194572 None:intergenic 30.0%
! GAGCAATAGTTAAGCATTTT+CGG + chr3.2:7191976-7191995 None:intergenic 30.0%
! TGGAAATTTTTCCTTCATTG+TGG - chr3.2:7195499-7195518 MS.gene93731:intron 30.0%
! TGGATCTATTATGTTACTTC+AGG + chr3.2:7193872-7193891 None:intergenic 30.0%
! TTGATGTATTTCAGGTAAGA+GGG - chr3.2:7195704-7195723 MS.gene93731:intron 30.0%
! TTTGATGTATTTCAGGTAAG+AGG - chr3.2:7195703-7195722 MS.gene93731:intron 30.0%
!! ACCTTAAAAGTCGATTTTGT+AGG + chr3.2:7193298-7193317 None:intergenic 30.0%
!! CACTCAATTTTGAGGATTTT+TGG + chr3.2:7194171-7194190 None:intergenic 30.0%
!! CCTTAAAAAACTGACTTGTA+AGG + chr3.2:7195366-7195385 None:intergenic 30.0%
!! CCTTAAAAGTCGATTTTGTA+GGG + chr3.2:7193297-7193316 None:intergenic 30.0%
!! GCATATTTCTGTTGATAGTA+TGG - chr3.2:7194636-7194655 MS.gene93731:intron 30.0%
!! TTATCTGTCTACTTTAGAGT+CGG - chr3.2:7193724-7193743 MS.gene93731:intron 30.0%
!! TTTAAGGAGTTTTATCCATC+TGG + chr3.2:7192164-7192183 None:intergenic 30.0%
!!! ATAGCATCTTTTTTTGGATC+AGG + chr3.2:7195754-7195773 None:intergenic 30.0%
!!! CCTTACAAGTCAGTTTTTTA+AGG - chr3.2:7195363-7195382 MS.gene93731:intron 30.0%
AACTTTAACAGCTGCAGTTA+TGG - chr3.2:7194063-7194082 MS.gene93731:intron 35.0%
AACTTTGTGGGAAAAAGCTT+TGG - chr3.2:7193460-7193479 MS.gene93731:intron 35.0%
AAGCGTAGTAGTCAAATTCA+TGG + chr3.2:7194132-7194151 None:intergenic 35.0%
AATGGCTCAAGAACTTGAAA+TGG - chr3.2:7191925-7191944 MS.gene93731:intron 35.0%
AATGTTCCATTAGTCCTAGT+TGG - chr3.2:7193954-7193973 MS.gene93731:intron 35.0%
AGAAATTCAAGAGCTTGTGA+AGG - chr3.2:7191841-7191860 MS.gene93731:CDS 35.0%
ATCTGTTAAGAGTCTCACAT+TGG + chr3.2:7193366-7193385 None:intergenic 35.0%
ATCTTTCAAACCGATGTTGT+AGG + chr3.2:7193088-7193107 None:intergenic 35.0%
ATGATATCTTGGAGAGCTTA+TGG - chr3.2:7192270-7192289 MS.gene93731:intron 35.0%
ATTTGATGAACTGGACTCAA+GGG - chr3.2:7194468-7194487 MS.gene93731:intron 35.0%
CAAGAACTTGAAATGGTATG+AGG - chr3.2:7191932-7191951 MS.gene93731:intron 35.0%
CACTTGTGTGAATATTTAGG+AGG + chr3.2:7192346-7192365 None:intergenic 35.0%
GAAATTCAAGAGCTTGTGAA+GGG - chr3.2:7191842-7191861 MS.gene93731:CDS 35.0%
GACTCACATTCATGATTAGT+GGG - chr3.2:7193516-7193535 MS.gene93731:intron 35.0%
GGACTAATAAAGAATAGGGT+AGG + chr3.2:7195733-7195752 None:intergenic 35.0%
GGCATCATAGAATGTGAATT+AGG - chr3.2:7193261-7193280 MS.gene93731:intron 35.0%
GTTATTGATCAACCAAACAG+AGG + chr3.2:7192615-7192634 None:intergenic 35.0%
TAGGTTATTCTTTGTACACG+AGG - chr3.2:7192879-7192898 MS.gene93731:CDS 35.0%
TCTTTCAAACCGATGTTGTA+GGG + chr3.2:7193087-7193106 None:intergenic 35.0%
TGACTCACATTCATGATTAG+TGG - chr3.2:7193515-7193534 MS.gene93731:intron 35.0%
TGGAAATTCTGCCTTTATTG+TGG - chr3.2:7195334-7195353 MS.gene93731:intron 35.0%
TTAACTCAACCCTACAACAT+CGG - chr3.2:7193075-7193094 MS.gene93731:intron 35.0%
TTCATTGTGTTGGAAGTGAA+GGG - chr3.2:7195082-7195101 MS.gene93731:intron 35.0%
TTGAAACTCTGTCTTCATTG+TGG - chr3.2:7195223-7195242 MS.gene93731:intron 35.0%
TTGAGTTAAGCTCAACCAAA+TGG + chr3.2:7193064-7193083 None:intergenic 35.0%
TTTAAACCAAAACACGCGAT+AGG + chr3.2:7191998-7192017 None:intergenic 35.0%
! ACTAATACCGTCTTTGAGTT+TGG + chr3.2:7195405-7195424 None:intergenic 35.0%
! ATTTGACTACTACGCTTTTG+GGG - chr3.2:7194135-7194154 MS.gene93731:intron 35.0%
! CATTTTAAGCGTAACATGAG+TGG - chr3.2:7193196-7193215 MS.gene93731:intron 35.0%
! CGATTTTGTAGGGTTTAGTT+AGG + chr3.2:7193287-7193306 None:intergenic 35.0%
! CTAATACCGTCTTTGAGTTT+GGG + chr3.2:7195404-7195423 None:intergenic 35.0%
! GAATTTGACTACTACGCTTT+TGG - chr3.2:7194133-7194152 MS.gene93731:intron 35.0%
! GCATTGATACTCAACTTTGT+GGG - chr3.2:7193448-7193467 MS.gene93731:intron 35.0%
! TCTCTCGTTTTCTCAAATTC+AGG + chr3.2:7194262-7194281 None:intergenic 35.0%
! TGATTATCAATGAGTTGGAC+CGG - chr3.2:7192713-7192732 MS.gene93731:intron 35.0%
! TGCATTGATACTCAACTTTG+TGG - chr3.2:7193447-7193466 MS.gene93731:intron 35.0%
! TGCTAGTTTGGTTTACTTCT+AGG + chr3.2:7192410-7192429 None:intergenic 35.0%
!! AAAAACTGACTTGTAAGGTG+AGG + chr3.2:7195361-7195380 None:intergenic 35.0%
!! AGTCTGTCAGATTTGTTGAT+GGG - chr3.2:7195422-7195441 MS.gene93731:intron 35.0%
!! CCCTACAAAATCGACTTTTA+AGG - chr3.2:7193294-7193313 MS.gene93731:intron 35.0%
!! GTTTTGGTCACTCAATTTTG+AGG + chr3.2:7194179-7194198 None:intergenic 35.0%
!! TAGTCTGTCAGATTTGTTGA+TGG - chr3.2:7195421-7195440 MS.gene93731:intron 35.0%
!! TATCTGTCTACTTTAGAGTC+GGG - chr3.2:7193725-7193744 MS.gene93731:intron 35.0%
!! TTATTGATTTCTACGCGACA+TGG - chr3.2:7191885-7191904 MS.gene93731:CDS 35.0%
!!! GTTTTTTACTAATAGGGGGA+GGG - chr3.2:7192960-7192979 MS.gene93731:intron 35.0%
!!! TGTTTTTTACTAATAGGGGG+AGG - chr3.2:7192959-7192978 MS.gene93731:intron 35.0%
!!! TTTTTTACTAATAGGGGGAG+GGG - chr3.2:7192961-7192980 MS.gene93731:intron 35.0%
AAACAGTTGGTCACAGAGTT+TGG + chr3.2:7193685-7193704 None:intergenic 40.0%
ACCCAAATGTTGCAATTAGG+CGG + chr3.2:7195037-7195056 None:intergenic 40.0%
AGTCTCACATTGGATGAGAT+AGG + chr3.2:7193356-7193375 None:intergenic 40.0%
ATACATGTCAATGTCGTGTC+TGG + chr3.2:7194941-7194960 None:intergenic 40.0%
ATCAACAATTAGGTGGCTAG+GGG + chr3.2:7195256-7195275 None:intergenic 40.0%
ATTACCACCCAATCTTACCT+AGG - chr3.2:7193167-7193186 MS.gene93731:intron 40.0%
ATTACCCAGGCCATATATCT+AGG + chr3.2:7195128-7195147 None:intergenic 40.0%
ATTGCCTAGATATATGGCCT+GGG - chr3.2:7195121-7195140 MS.gene93731:intron 40.0%
CATCAACAATTAGGTGGCTA+GGG + chr3.2:7195257-7195276 None:intergenic 40.0%
CATTTATCCACGATGTCGAT+TGG + chr3.2:7193429-7193448 None:intergenic 40.0%
CATTTGATGAACTGGACTCA+AGG - chr3.2:7194467-7194486 MS.gene93731:intron 40.0%
CGCTTAAAATGTCTAGTCCT+AGG + chr3.2:7193187-7193206 None:intergenic 40.0%
CTAGGCAAATCTCTGTTGTT+TGG + chr3.2:7192392-7192411 None:intergenic 40.0%
CTTCACTTCCAACACAATGA+AGG + chr3.2:7195083-7195102 None:intergenic 40.0%
CTTCATTGTGTTGGAAGTGA+AGG - chr3.2:7195081-7195100 MS.gene93731:intron 40.0%
GCAACCCAAATGTTGCAATT+AGG + chr3.2:7195040-7195059 None:intergenic 40.0%
GCCATATATCTAGGCAATGT+GGG + chr3.2:7195119-7195138 None:intergenic 40.0%
GTAGGGGTAAACCTGTAATA+TGG - chr3.2:7193557-7193576 MS.gene93731:intron 40.0%
GTCTAGTCCTAGGTAAGATT+GGG + chr3.2:7193177-7193196 None:intergenic 40.0%
TAAGGTGAGGACCACAATAA+AGG + chr3.2:7195348-7195367 None:intergenic 40.0%
TACACGAGGTTGAAAATGTG+AGG - chr3.2:7192893-7192912 MS.gene93731:intron 40.0%
TAGGCTCATCAACAATTAGG+TGG + chr3.2:7195263-7195282 None:intergenic 40.0%
TCATCAACAATTAGGTGGCT+AGG + chr3.2:7195258-7195277 None:intergenic 40.0%
TCCCACATTGCCTAGATATA+TGG - chr3.2:7195115-7195134 MS.gene93731:intron 40.0%
TCTCTATGCAGAAGATAGCA+TGG - chr3.2:7192826-7192845 MS.gene93731:intron 40.0%
TCTTGAGCCATTAAGATGCA+TGG + chr3.2:7191917-7191936 None:intergenic 40.0%
TGTCTAGTCCTAGGTAAGAT+TGG + chr3.2:7193178-7193197 None:intergenic 40.0%
TTCCAACACAATGAAGGTGA+TGG + chr3.2:7195077-7195096 None:intergenic 40.0%
! AAGTCTTTTCCCACTAAGTG+GGG + chr3.2:7192789-7192808 None:intergenic 40.0%
! CAAGTCTTTTCCCACTAAGT+GGG + chr3.2:7192790-7192809 None:intergenic 40.0%
! GCTCATTTTGTTGCATTTGC+AGG + chr3.2:7193797-7193816 None:intergenic 40.0%
! TTTTTACTAATAGGGGGAGG+GGG - chr3.2:7192962-7192981 MS.gene93731:intron 40.0%
AAGATTTGAACACAGCCCCT+TGG - chr3.2:7193007-7193026 MS.gene93731:intron 45.0%
AAGGCTAGACAGTCACCATT+TGG - chr3.2:7193046-7193065 MS.gene93731:intron 45.0%
AATGTTGCAATTAGGCGGCT+AGG + chr3.2:7195032-7195051 None:intergenic 45.0%
AATTTAGGCAGCCGTCATTG+TGG - chr3.2:7195156-7195175 MS.gene93731:intron 45.0%
AGAGCCTATCCAAGATCTGA+TGG + chr3.2:7193238-7193257 None:intergenic 45.0%
AGCCGCCTAATTGCAACATT+TGG - chr3.2:7195032-7195051 MS.gene93731:intron 45.0%
ATGTTGCAATTAGGCGGCTA+GGG + chr3.2:7195031-7195050 None:intergenic 45.0%
CAGATTGAAGATGTGTAGCG+AGG + chr3.2:7195573-7195592 None:intergenic 45.0%
CATCCTTGTTCCATGCTAAG+AGG + chr3.2:7193403-7193422 None:intergenic 45.0%
CATTGCCTAGATATATGGCC+TGG - chr3.2:7195120-7195139 MS.gene93731:intron 45.0%
CCACTTAGTGGGAAAAGACT+TGG - chr3.2:7192788-7192807 MS.gene93731:intron 45.0%
CGGTAGGCTCATCAACAATT+AGG + chr3.2:7195266-7195285 None:intergenic 45.0%
CTCCATCACCTTCATTGTGT+TGG - chr3.2:7195072-7195091 MS.gene93731:intron 45.0%
GAGCCTATCCAAGATCTGAT+GGG + chr3.2:7193237-7193256 None:intergenic 45.0%
GCACAACCCAAACTCAAAGA+CGG - chr3.2:7195395-7195414 MS.gene93731:intron 45.0%
GCACGAAAGACAGAAACAGT+TGG + chr3.2:7193698-7193717 None:intergenic 45.0%
GCCGCCTAATTGCAACATTT+GGG - chr3.2:7195033-7195052 MS.gene93731:intron 45.0%
GGCCATATATCTAGGCAATG+TGG + chr3.2:7195120-7195139 None:intergenic 45.0%
GTCAGAGTCTTGCATTAGTC+AGG - chr3.2:7192673-7192692 MS.gene93731:intron 45.0%
GTGTGGTCCATGCATCTTAA+TGG - chr3.2:7191907-7191926 MS.gene93731:CDS 45.0%
TAGTCCTAGGTAAGATTGGG+TGG + chr3.2:7193174-7193193 None:intergenic 45.0%
TCAAAGGGCCAGAACATGAT+GGG - chr3.2:7195471-7195490 MS.gene93731:intron 45.0%
TCATTGTCAGCCTCTTAGCA+TGG - chr3.2:7193390-7193409 MS.gene93731:intron 45.0%
TGCTAAGAGGCTGACAATGA+TGG + chr3.2:7193390-7193409 None:intergenic 45.0%
! AGATCTTGGATAGGCTCTGA+AGG - chr3.2:7193240-7193259 MS.gene93731:intron 45.0%
! ATTGCTCCTATCGCGTGTTT+TGG - chr3.2:7191989-7192008 MS.gene93731:intron 45.0%
! CAACACAATGAAGGTGATGG+AGG + chr3.2:7195074-7195093 None:intergenic 45.0%
! CCAAGTCTTTTCCCACTAAG+TGG + chr3.2:7192791-7192810 None:intergenic 45.0%
!! GAGCTTAATTCTGGAACCTG+TGG - chr3.2:7193813-7193832 MS.gene93731:intron 45.0%
AAACACACCCCATCATGCTC+GGG + chr3.2:7195205-7195224 None:intergenic 50.0%
AACAATTAGGTGGCTAGGGG+AGG + chr3.2:7195253-7195272 None:intergenic 50.0%
ACGCAAATGCTGCAACTAGG+CGG + chr3.2:7195536-7195555 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr3.2:7192777-7192796 None:intergenic 50.0%
AGACGCTTAAGCGCATCGTA+GGG - chr3.2:7193540-7193559 MS.gene93731:intron 50.0%
ATCCACGCTTCAGGCTCATA+GGG - chr3.2:7195290-7195309 MS.gene93731:intron 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr3.2:7192776-7192795 MS.gene93731:intron 50.0%
CAAACACACCCCATCATGCT+CGG + chr3.2:7195206-7195225 None:intergenic 50.0%
CAAAGGGCCAGAACATGATG+GGG - chr3.2:7195472-7195491 MS.gene93731:intron 50.0%
CAGCCTCTTAGCATGGAACA+AGG - chr3.2:7193397-7193416 MS.gene93731:intron 50.0%
CCAAACACCCCATCATGTTC+TGG + chr3.2:7195482-7195501 None:intergenic 50.0%
CTAGAGGAGGACCACAATGA+AGG + chr3.2:7195513-7195532 None:intergenic 50.0%
CTCAAAGGGCCAGAACATGA+TGG - chr3.2:7195470-7195489 MS.gene93731:intron 50.0%
GAAGTGTGGGACCACAATGA+CGG + chr3.2:7195170-7195189 None:intergenic 50.0%
GATGAAGCCAATCGACATCG+TGG - chr3.2:7193419-7193438 MS.gene93731:intron 50.0%
GATTTCTACGCGACATGGTG+TGG - chr3.2:7191890-7191909 MS.gene93731:CDS 50.0%
GCAACGCAAATGCTGCAACT+AGG + chr3.2:7195539-7195558 None:intergenic 50.0%
TAGACGCTTAAGCGCATCGT+AGG - chr3.2:7193539-7193558 MS.gene93731:intron 50.0%
TCATTGTGGTCCCACACTTC+AGG - chr3.2:7195170-7195189 MS.gene93731:intron 50.0%
TCCCACACTTCAGGCTCATA+GGG - chr3.2:7195179-7195198 MS.gene93731:intron 50.0%
TGAATTTGCACGCGACATGC+AGG - chr3.2:7194808-7194827 MS.gene93731:intron 50.0%
TGTAGCTGACCCCACTTAGT+GGG - chr3.2:7192777-7192796 MS.gene93731:intron 50.0%
TGTTGCAATTAGGCGGCTAG+GGG + chr3.2:7195030-7195049 None:intergenic 50.0%
! CCAGAACATGATGGGGTGTT+TGG - chr3.2:7195479-7195498 MS.gene93731:intron 50.0%
AGCCTGAAGCGTGGATGATG+CGG + chr3.2:7195286-7195305 None:intergenic 55.0%
ATGAGTGGCCCAATAGCGAG+CGG - chr3.2:7193211-7193230 MS.gene93731:intron 55.0%
CATCCACGCTTCAGGCTCAT+AGG - chr3.2:7195289-7195308 MS.gene93731:intron 55.0%
CGGCCCATCAGATCTTGGAT+AGG - chr3.2:7193231-7193250 MS.gene93731:intron 55.0%
CTAGGGGAGGATTGCAGTGA+AGG + chr3.2:7195014-7195033 None:intergenic 55.0%
GACGCTTAAGCGCATCGTAG+GGG - chr3.2:7193541-7193560 MS.gene93731:intron 55.0%
GCCCTATGAGCCTGAAGTGT+GGG + chr3.2:7195183-7195202 None:intergenic 55.0%
GTCCCACACTTCAGGCTCAT+AGG - chr3.2:7195178-7195197 MS.gene93731:intron 55.0%
GTGTAGCGAGGCTGCAATGA+AGG + chr3.2:7195561-7195580 None:intergenic 55.0%
TACCGCATCATCCACGCTTC+AGG - chr3.2:7195281-7195300 MS.gene93731:intron 55.0%
TCATAGGGCCCGAGCATGAT+GGG - chr3.2:7195194-7195213 MS.gene93731:intron 55.0%
TCATAGGGCGCGAGCATGAT+GGG - chr3.2:7195305-7195324 MS.gene93731:intron 55.0%
TGAAGCGTGGATGATGCGGT+AGG + chr3.2:7195282-7195301 None:intergenic 55.0%
TTACTAATAGGGGGAGGGGG+AGG - chr3.2:7192965-7192984 MS.gene93731:intron 55.0%
!! GGTGATGGAGGCTGCAATGA+AGG + chr3.2:7195062-7195081 None:intergenic 55.0%
!! GTCCACGCTTCTGGCTCAAA+GGG - chr3.2:7195456-7195475 MS.gene93731:intron 55.0%
CATAGGGCCCGAGCATGATG+GGG - chr3.2:7195195-7195214 MS.gene93731:intron 60.0%
CATAGGGCGCGAGCATGATG+GGG - chr3.2:7195306-7195325 MS.gene93731:intron 60.0%
CTCATAGGGCCCGAGCATGA+TGG - chr3.2:7195193-7195212 MS.gene93731:intron 60.0%
CTCATAGGGCGCGAGCATGA+TGG - chr3.2:7195304-7195323 MS.gene93731:intron 60.0%
GGCCCTATGAGCCTGAAGTG+TGG + chr3.2:7195184-7195203 None:intergenic 60.0%
GGGGAGGATTGCAGTGAAGG+AGG + chr3.2:7195011-7195030 None:intergenic 60.0%
TCCCACATCGTCCACGCTTC+TGG - chr3.2:7195447-7195466 MS.gene93731:intron 60.0%
TGCAACTAGGCGGCTAGAGG+AGG + chr3.2:7195526-7195545 None:intergenic 60.0%
TGCAATTAGGCGGCTAGGGG+AGG + chr3.2:7195027-7195046 None:intergenic 60.0%
TGCTGCAACTAGGCGGCTAG+AGG + chr3.2:7195529-7195548 None:intergenic 60.0%
! AGCCAGAAGCGTGGACGATG+TGG + chr3.2:7195452-7195471 None:intergenic 60.0%
! CTGATGGGCCGCTCGCTATT+GGG + chr3.2:7193222-7193241 None:intergenic 60.0%
! GCCAGAAGCGTGGACGATGT+GGG + chr3.2:7195451-7195470 None:intergenic 60.0%
! GCGAGCATGATGGGGTGTGT+TGG - chr3.2:7195314-7195333 MS.gene93731:intron 60.0%
! TCTGATGGGCCGCTCGCTAT+TGG + chr3.2:7193223-7193242 None:intergenic 60.0%
!! CGTCCACGCTTCTGGCTCAA+AGG - chr3.2:7195455-7195474 MS.gene93731:intron 60.0%
CGCCCTATGAGCCTGAAGCG+TGG + chr3.2:7195295-7195314 None:intergenic 65.0%
GCGAGCGGCCCATCAGATCT+TGG - chr3.2:7193226-7193245 MS.gene93731:intron 65.0%
GGCCCTTTGAGCCAGAAGCG+TGG + chr3.2:7195461-7195480 None:intergenic 65.0%
! GAGGGGGAGGCACAGTCCCT+TGG - chr3.2:7192978-7192997 MS.gene93731:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 7191824 7195834 7191824 ID=MS.gene93731
chr3.2 mRNA 7191824 7195834 7191824 ID=MS.gene93731.t1;Parent=MS.gene93731
chr3.2 exon 7195712 7195834 7195712 ID=MS.gene93731.t1.exon1;Parent=MS.gene93731.t1
chr3.2 CDS 7195712 7195834 7195712 ID=cds.MS.gene93731.t1;Parent=MS.gene93731.t1
chr3.2 exon 7192829 7192909 7192829 ID=MS.gene93731.t1.exon2;Parent=MS.gene93731.t1
chr3.2 CDS 7192829 7192909 7192829 ID=cds.MS.gene93731.t1;Parent=MS.gene93731.t1
chr3.2 exon 7191824 7191940 7191824 ID=MS.gene93731.t1.exon3;Parent=MS.gene93731.t1
chr3.2 CDS 7191824 7191940 7191824 ID=cds.MS.gene93731.t1;Parent=MS.gene93731.t1
Gene Sequence

>MS.gene93731

AAAAAGTTGTCAGCTCAAGAAATTCAAGAGCTTGTGAAGGGAGATAGAAATGTTCCTCTTATTATTGATTTCTACGCGACATGGTGTGGTCCATGCATCTTAATGGCTCAAGAACTTGAAATGGTATGAGGTTTAATCGATGTTAAATTCCGAAAATGCTTAACTATTGCTCCTATCGCGTGTTTTGGTTTAAAATTTTGAGCTAGTGAAATGTATTTATTTCAACCTTTACTGAGATTATCATTCTTAGATTAAGAATTTGATGTTAAAAATGACCGCTTTAGTTCGTTATTAGTTTTATAGATTTTGGATTCTGAAATTGGTTAATAATAGTTCACCAGATGGATAAAACTCCTTAAAATATTCAGGACTTGTTTGGATAAGCAATTAATTAAAGGGCTTCTAGTATTAGTGTTTTTATATAAGCTATATAAGTGTGTTTTCATATGATATCTTGGAGAGCTTATGGAAATAAGCTGAAAACAACTTATAAACATGTCATAAGCTGTTTTCATAAGCCCTCCTAAATATTCACACAAGTGCTTATGCTAGTAAATAAGTCAATCCAAACAACAGAGATTTGCCTAGAAGTAAACCAAACTAGCAGAGTTTAATTTTCCTAGAAGTAAATTCAGTTGACATTACAACAATGGCAGAAACTAACAATTATTGTAATAATAATTGGACGCTACAGAAAGTATAACTATAATGTTATATTTCATATTTTCATTTGTGTTATATTTGAGATTTTGTTGTGTAAAATTATTAATTTCATTAAAAAAAAAAATCCTCTGTTTGGTTGATCAATAACAACATATGTTGTATCTATTGCACAAGCATTGTTCTCATGTCAGAGTCTTGCATTAGTCAGGTTGAGTAATTTTCATGATGATTATCAATGAGTTGGACCGGAATATGATTTATGATAGAACATTATGGGGTAATTCAATCCATGTAGCTGACCCCACTTAGTGGGAAAAGACTTGGTTGTTGTTGTATCAATCTCTATGCAGAAGATAGCATGGTCAGCTAGCTCTTGCATTCTAAACTATATTTAGGTTATTCTTTGTACACGAGGTTGAAAATGTGAGGAGAGTGAAAGTTTTTCATCTTCTCTTGTTGAAATGAATCGTGTTGTTTTTTACTAATAGGGGGAGGGGGAGGCACAGTCCCTTGGAATTACAAGATTTGAACACAGCCCCTTGGAATTACTGATTACAAAAAGGCTAGACAGTCACCATTTGGTTGAGCTTAACTCAACCCTACAACATCGGTTTGAAAGATGACAGATGCCTCCCACTTATATACTCATTTTCATTTCTTATCTTGGCTAATGTGAGACTATTACCACCCAATCTTACCTAGGACTAGACATTTTAAGCGTAACATGAGTGGCCCAATAGCGAGCGGCCCATCAGATCTTGGATAGGCTCTGAAGGCATCATAGAATGTGAATTAGGCCTAACTAAACCCTACAAAATCGACTTTTAAGGTGACGAATGTCTCCCGCTTATACACTTATTTTGAGACCTATCTCATCCAATGTGAGACTCTTAACAGATTCCATCATTGTCAGCCTCTTAGCATGGAACAAGGATGAAGCCAATCGACATCGTGGATAAATGCATTGATACTCAACTTTGTGGGAAAAAGCTTTGGTTTTTACTGTTTGAATGAATTGATGTTGAGTTTGACTCACATTCATGATTAGTGGGTAGACGCTTAAGCGCATCGTAGGGGTAAACCTGTAATATGGAATGTAGTATTTAATCACACATTTGTACTTTGTAACCTTAAGCATTGCACAATAGAAAACTACAACAGCCACTTTGTTTTTTGTAGTCATAGGCTCAATTGACCAAACTCTGTGACCAACTGTTTCTGTCTTTCGTGCGTTTATTTATCTGTCTACTTTAGAGTCGGGTTTGCTGTTCTAGCAATTGTTAAAATAGATGTTGGAATTCTGGTTGCCTGCAAATGCAACAAAATGAGCTTAATTCTGGAACCTGTGGAATATTCTGTATTTATAGGTTTTGAGGATGACACCTGAAGTAACATAATAGATCCAGGCATATTGAATATTCTTTGAACAGGCTAAAGCATATGTTTTTAGATTGTGATGACTCAATCAATGTTCCATTAGTCCTAGTTGGTTTTATTGTGAGTTTTAATTGCAATGCTGAAAATTCACACTTCACAGTTGTAATTGCTTTACAATTTATGCATCATTTTGTTATGGAACTTTAACAGCTGCAGTTATGGAACTTTTTGCTAACTCATCGTTTTGTTCCCTGTATACTATTTTCCATGAATTTGACTACTACGCTTTTGGGGACTAAAAGTGCCAAAAATCCTCAAAATTGAGTGACCAAAACTGTAAAAAAATACAATGTGTAGGGACCAAATTCGTGAAAAATAAATCGGAGTATCAAAGTCCTGAATTTGAGAAAACGAGAGACAAAAATTGTATTTAAGCCTTCATTCTAAATAACACTAGAAAGAAATGACTACAACTTCACAACCAGTTTACAATCAAAGTAATTTTACTTTTACATATGTTATTGAAATTTCAAAGCCATAACTTGTATAATAGTTATTATCCTTTGTTGAATACTTTTTTGACTTCCATCATTGAAAGAAATACATTTGATGAACTGGACTCAAGGGACAAATTGCATTCTAATAATCCCAAAAAAGTTAGTTCTATAACTCTTTGATTTCCTTTTCCTCAGAATTACCAATTACTTTCATACTGATTTTTACACCACCAAGCTTTACATATTTTATGTTAATTTCTTAACTTTCGAGGATAGCATATTTCTGTTGATAGTATGGTTGTTAATTTGAGTGTATTTGCTCCAATGTTGATAAATAAAGAGTAGTTGATTTGAAAACTCCGTAGTAACCTTCAATAAATTTGTGCAGCTTGCAGTTGAGTACGAGAACAATGCGATGATTGTTAAAGTTGATACAGATGATGAGTATGAATTTGCACGCGACATGCAGGTAATAAGCTTGTTTTGTTAACTTGCATGATTATCCTTAAAAGATTAGAGGAAAAAAGAAACATATCATGGACTCAAAGCAAGTTTCATCGATGAAGCAACACAAAAACCAGACACGACATTGACATGTATACAACAGTAATAATGTGAGAAAATAAGAGTTATTATTGTTGGAAATTCCTCCTTCACTGCAATCCTCCCCTAGCCGCCTAATTGCAACATTTGGGTTGCCTTCATTGCAGCCTCCATCACCTTCATTGTGTTGGAAGTGAAGGGATGTATTTAGTCCCACATTGCCTAGATATATGGCCTGGGTAATGTTTATAAAATTTAGGCAGCCGTCATTGTGGTCCCACACTTCAGGCTCATAGGGCCCGAGCATGATGGGGTGTGTTTGAAACTCTGTCTTCATTGTGGTCGTCCTCCCCTAGCCACCTAATTGTTGATGAGCCTACCGCATCATCCACGCTTCAGGCTCATAGGGCGCGAGCATGATGGGGTGTGTTGGAAATTCTGCCTTTATTGTGGTCCTCACCTTACAAGTCAGTTTTTTAAGGTTAAGTTAGGCACAACCCAAACTCAAAGACGGTATTAGTCTGTCAGATTTGTTGATGGGTTTCCCACATCGTCCACGCTTCTGGCTCAAAGGGCCAGAACATGATGGGGTGTTTGGAAATTTTTCCTTCATTGTGGTCCTCCTCTAGCCGCCTAGTTGCAGCATTTGCGTTGCCTTCATTGCAGCCTCGCTACACATCTTCAATCTGAAGTTGTACTGCGTAGATTTCCATCTTAATCATGTTTATACGTTTATTACACACATAATTGGAATTTGAGTTAAAATTTAGCTGTTGAAACATCTAACAACACATAAACTTTTGATGTATTTCAGGTAAGAGGGTTGCCTACCCTATTCTTTATTAGTCCTGATCCAAAAAAAGATGCTATTAGAACTGAAGGGCTTATACCAATACAGATGATGAGAGATATCATTGACAAAGAAATGTAA

Protein sequence

>MS.gene93731.t1

KKLSAQEIQELVKGDRNVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIVKVDTDDEYEFARDMQVRGLPTLFFISPDPKKDAIRTEGLIPIQMMRDIIDKEM