Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56484.t1 | XP_003607789.2 | 96.4 | 982 | 32 | 2 | 1 | 980 | 1 | 981 | 0.00E+00 | 1837 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56484.t1 | P53535 | 79.2 | 917 | 187 | 2 | 64 | 980 | 62 | 974 | 0.0e+00 | 1434.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56484.t1 | G7JHG9 | 96.4 | 982 | 32 | 2 | 1 | 980 | 1 | 981 | 0.0e+00 | 1837.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene56484 | 0.808528 | 2.96E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene56484 | 0.880375 | 5.78E-70 | -1.69E-46 |
| MS.gene04933 | MS.gene56484 | 0.837172 | 6.08E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene56484 | 0.847489 | 1.12E-59 | -1.69E-46 |
| MS.gene049669 | MS.gene56484 | 0.826913 | 2.09E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene56484 | 0.800385 | 1.48E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene56484 | 0.871467 | 6.68E-67 | -1.69E-46 |
| MS.gene050227 | MS.gene56484 | 0.881177 | 2.98E-70 | -1.69E-46 |
| MS.gene050228 | MS.gene56484 | 0.88386 | 3.14E-71 | -1.69E-46 |
| MS.gene050303 | MS.gene56484 | 0.815213 | 1.04E-51 | -1.69E-46 |
| MS.gene050319 | MS.gene56484 | -0.808393 | 3.17E-50 | -1.69E-46 |
| MS.gene050330 | MS.gene56484 | -0.843009 | 1.82E-58 | -1.69E-46 |
| MS.gene050442 | MS.gene56484 | 0.825827 | 3.79E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene56484 | 0.836799 | 7.57E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene56484 | -0.847816 | 9.10E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene56484 | 0.862463 | 4.98E-64 | -1.69E-46 |
| MS.gene050719 | MS.gene56484 | 0.816025 | 6.84E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene56484 | 0.818617 | 1.79E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene56484 | 0.823495 | 1.34E-53 | -1.69E-46 |
| MS.gene050787 | MS.gene56484 | 0.807011 | 6.22E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene56484 | 0.804832 | 1.79E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene56484 | 0.836467 | 9.20E-57 | -1.69E-46 |
| MS.gene050953 | MS.gene56484 | 0.807175 | 5.75E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene56484 | -0.814841 | 1.25E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene56484 | 0.819957 | 8.84E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene56484 | 0.822739 | 2.02E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene56484 | 0.805635 | 1.21E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene56484 | 0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene56484 | 0.85169 | 7.53E-61 | -1.69E-46 |
| MS.gene052176 | MS.gene56484 | 0.875789 | 2.34E-68 | -1.69E-46 |
| MS.gene052286 | MS.gene56484 | 0.802801 | 4.72E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene56484 | 0.839669 | 1.38E-57 | -1.69E-46 |
| MS.gene052309 | MS.gene56484 | -0.853697 | 2.01E-61 | -1.69E-46 |
| MS.gene052358 | MS.gene56484 | -0.838283 | 3.15E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene56484 | 0.847468 | 1.13E-59 | -1.69E-46 |
| MS.gene052389 | MS.gene56484 | 0.811608 | 6.43E-51 | -1.69E-46 |
| MS.gene052600 | MS.gene56484 | 0.834445 | 2.99E-56 | -1.69E-46 |
| MS.gene053221 | MS.gene56484 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene56484 | 0.86854 | 6.05E-66 | -1.69E-46 |
| MS.gene053907 | MS.gene56484 | 0.80312 | 4.06E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene56484 | 0.802003 | 6.89E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene56484 | -0.815862 | 7.44E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene56484 | 0.820467 | 6.75E-53 | -1.69E-46 |
| MS.gene054473 | MS.gene56484 | 0.840707 | 7.39E-58 | -1.69E-46 |
| MS.gene054667 | MS.gene56484 | 0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene56484 | 0.846364 | 2.27E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene56484 | 0.888953 | 3.73E-73 | -1.69E-46 |
| MS.gene054983 | MS.gene56484 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene56484 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene56484 | 0.831055 | 2.07E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene56484 | 0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene56484 | 0.810439 | 1.15E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene56484 | -0.838302 | 3.12E-57 | -1.69E-46 |
| MS.gene056087 | MS.gene56484 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene56484 | 0.842782 | 2.10E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene56484 | 0.812381 | 4.36E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene56484 | 0.809044 | 2.30E-50 | -1.69E-46 |
| MS.gene057121 | MS.gene56484 | 0.819031 | 1.44E-52 | -1.69E-46 |
| MS.gene057245 | MS.gene56484 | 0.81752 | 3.16E-52 | -1.69E-46 |
| MS.gene057439 | MS.gene56484 | 0.813718 | 2.22E-51 | -1.69E-46 |
| MS.gene057539 | MS.gene56484 | 0.838559 | 2.68E-57 | -1.69E-46 |
| MS.gene057639 | MS.gene56484 | 0.818702 | 1.71E-52 | -1.69E-46 |
| MS.gene057967 | MS.gene56484 | 0.827401 | 1.60E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene56484 | 0.828326 | 9.57E-55 | -1.69E-46 |
| MS.gene058200 | MS.gene56484 | 0.828697 | 7.78E-55 | -1.69E-46 |
| MS.gene058201 | MS.gene56484 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene56484 | 0.8129 | 3.36E-51 | -1.69E-46 |
| MS.gene058749 | MS.gene56484 | 0.82644 | 2.71E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene56484 | 0.81789 | 2.61E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene56484 | -0.816878 | 4.41E-52 | -1.69E-46 |
| MS.gene060404 | MS.gene56484 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene56484 | 0.818648 | 1.76E-52 | -1.69E-46 |
| MS.gene060619 | MS.gene56484 | 0.808851 | 2.53E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene56484 | -0.806083 | 9.77E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene56484 | 0.819334 | 1.23E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene56484 | -0.875356 | 3.29E-68 | -1.69E-46 |
| MS.gene061049 | MS.gene56484 | 0.802516 | 5.41E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene56484 | -0.839491 | 1.53E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56484.t1 | MTR_4g082950 | 97.047 | 982 | 26 | 2 | 1 | 980 | 1 | 981 | 0.0 | 1971 |
| MS.gene56484.t1 | MTR_0288s0040 | 74.091 | 880 | 193 | 6 | 67 | 942 | 44 | 892 | 0.0 | 1350 |
| MS.gene56484.t1 | MTR_3g462340 | 66.422 | 408 | 135 | 2 | 573 | 980 | 435 | 840 | 0.0 | 584 |
| MS.gene56484.t1 | MTR_3g462340 | 56.982 | 444 | 185 | 3 | 84 | 527 | 31 | 468 | 2.21e-173 | 527 |
| MS.gene56484.t1 | MTR_2g014460 | 51.741 | 402 | 185 | 5 | 580 | 980 | 595 | 988 | 1.03e-131 | 422 |
| MS.gene56484.t1 | MTR_2g014460 | 48.434 | 415 | 202 | 5 | 80 | 491 | 183 | 588 | 6.34e-121 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56484.t1 | AT3G29320 | 68.839 | 982 | 261 | 7 | 8 | 980 | 17 | 962 | 0.0 | 1397 |
| MS.gene56484.t1 | AT3G46970 | 65.931 | 408 | 137 | 2 | 573 | 980 | 436 | 841 | 0.0 | 587 |
| MS.gene56484.t1 | AT3G46970 | 54.489 | 479 | 205 | 5 | 52 | 527 | 1 | 469 | 4.95e-174 | 528 |
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTTCTAATTGCTCTTC+TGG | 0.206585 | 4.4:+30114948 | None:intergenic |
| TTCTATGGAGAAGTTATTTC+AGG | 0.216727 | 4.4:-30112531 | MS.gene56484:CDS |
| GATCAGGAATGACGGTAAAT+TGG | 0.232719 | 4.4:-30111900 | MS.gene56484:CDS |
| CGACGAATTGATGGGATCTT+TGG | 0.243497 | 4.4:-30107114 | MS.gene56484:CDS |
| TTCTGTGTGTTTAGTACAGC+TGG | 0.244339 | 4.4:-30107610 | MS.gene56484:intron |
| GATTTGAAGGCTTTCAATAC+TGG | 0.245062 | 4.4:-30112372 | MS.gene56484:CDS |
| GTGATTCCCTTATCATAAAT+TGG | 0.247012 | 4.4:-30113726 | MS.gene56484:CDS |
| TCTTATCCAGTTAGATTCTA+TGG | 0.254682 | 4.4:-30112546 | MS.gene56484:CDS |
| ATTTGTACCACCACTTTATC+TGG | 0.266367 | 4.4:+30111868 | None:intergenic |
| AATTACCCTGCATGGGGATA+TGG | 0.274456 | 4.4:-30112855 | MS.gene56484:CDS |
| GCAAGCTTATTACATGTCTA+TGG | 0.286957 | 4.4:-30113665 | MS.gene56484:CDS |
| CATGAAGTTGTTGCTGAGTA+TGG | 0.298752 | 4.4:-30111343 | MS.gene56484:CDS |
| TTTAGAGGATGTGGCTAATC+AGG | 0.301609 | 4.4:-30113460 | MS.gene56484:intron |
| GGACCACAATCGCAAGTTTA+TGG | 0.313392 | 4.4:+30112419 | None:intergenic |
| TGCATTCCAATTTATGATAA+GGG | 0.315129 | 4.4:+30113720 | None:intergenic |
| GGTAACAGATCTTGAGAAAT+TGG | 0.317053 | 4.4:-30110666 | MS.gene56484:CDS |
| CGAACCATCATTGGCAGGTT+TGG | 0.317570 | 4.4:+30111019 | None:intergenic |
| TTCTTCAGTTGAAACTTTAG+AGG | 0.319118 | 4.4:+30112398 | None:intergenic |
| TGCTGAGGCTCTGAGGAAAC+TGG | 0.320911 | 4.4:-30113490 | MS.gene56484:CDS |
| CCCATTCCAAATCAAACATT+TGG | 0.324417 | 4.4:-30115020 | MS.gene56484:CDS |
| ATGAATATGCCAGAGATATA+TGG | 0.324624 | 4.4:-30106595 | MS.gene56484:CDS |
| GACTGGAGGAGAAAGTATTT+TGG | 0.328200 | 4.4:-30112487 | MS.gene56484:CDS |
| GACATGTGGAAATAATAAAA+AGG | 0.329549 | 4.4:-30111518 | MS.gene56484:CDS |
| AACTGAAGAATTTGATTTGA+AGG | 0.329927 | 4.4:-30112385 | MS.gene56484:CDS |
| CAGAAACGGATCCATCTTCT+AGG | 0.345198 | 4.4:+30110740 | None:intergenic |
| TCGCTGCCAAATGTTTGATT+TGG | 0.348700 | 4.4:+30115014 | None:intergenic |
| TTGCATTCCAATTTATGATA+AGG | 0.352440 | 4.4:+30113719 | None:intergenic |
| AGTTGCAAAGTAAGCCTTAC+TGG | 0.354966 | 4.4:+30113762 | None:intergenic |
| AGGGCATTGTTAAATGCAAT+TGG | 0.355293 | 4.4:-30113537 | MS.gene56484:CDS |
| AAGCTTGGGATATTACTAAA+AGG | 0.359212 | 4.4:-30111768 | MS.gene56484:intron |
| TCTGCATTCCTGAGCTGATT+AGG | 0.359974 | 4.4:-30111825 | MS.gene56484:CDS |
| CAGTTCCGCTGCTTTGTCGC+TGG | 0.365462 | 4.4:+30114909 | None:intergenic |
| GTCTTCTGTTCCAATCCATT+TGG | 0.366997 | 4.4:+30110691 | None:intergenic |
| CAAGGACTTCCCTAGCTACT+TGG | 0.367893 | 4.4:-30107048 | MS.gene56484:CDS |
| AGGAGGAAGTTGCTGAAAAC+TGG | 0.368015 | 4.4:-30112782 | MS.gene56484:CDS |
| CAGAGTGGATAGAATCAAAA+AGG | 0.368398 | 4.4:-30110373 | MS.gene56484:CDS |
| TTTCATGTTGCTTGTTCCAC+TGG | 0.374129 | 4.4:+30107579 | None:intergenic |
| CCTTCTATTGATTCATCCCC+AGG | 0.374631 | 4.4:+30112000 | None:intergenic |
| CCTTTACTTCTTCAAACCTT+GGG | 0.375831 | 4.4:+30107174 | None:intergenic |
| ACTAGAGAATATTGAGTTGC+CGG | 0.377955 | 4.4:-30111272 | MS.gene56484:CDS |
| ACTTCTCCATAGAATCTAAC+TGG | 0.381745 | 4.4:+30112540 | None:intergenic |
| CTGAAGAAATTGCAGGGTTA+AGG | 0.382529 | 4.4:-30107453 | MS.gene56484:CDS |
| GAATATTGAGTTGCCGGATT+CGG | 0.385197 | 4.4:-30111266 | MS.gene56484:CDS |
| GAAACTGGGTTACAATTTAG+AGG | 0.387483 | 4.4:-30113475 | MS.gene56484:CDS |
| ATGAATGGATGTGTACAAAT+TGG | 0.390375 | 4.4:-30107550 | MS.gene56484:CDS |
| CCATTCCCAAGGGCTGCATC+TGG | 0.392098 | 4.4:+30112927 | None:intergenic |
| ATATATCTCTGGCATATTCA+TGG | 0.394972 | 4.4:+30106597 | None:intergenic |
| ATAAACTCGACCACCGAATC+CGG | 0.400669 | 4.4:+30111253 | None:intergenic |
| TGTTGATGATAATGATATAA+AGG | 0.401976 | 4.4:-30111188 | MS.gene56484:CDS |
| CATCAATTCGTCGTAGTTGT+AGG | 0.404593 | 4.4:+30107124 | None:intergenic |
| TTCTTGCTTTCTAGACTCCT+TGG | 0.404594 | 4.4:-30112886 | MS.gene56484:CDS |
| AAAACAATTGTTTGTTCCTC+GGG | 0.409628 | 4.4:-30108266 | MS.gene56484:CDS |
| AGATGCAATGTTTGATGTAC+AGG | 0.409770 | 4.4:-30110291 | MS.gene56484:intron |
| TTTATCTATACCTAATGTGC+TGG | 0.410380 | 4.4:+30107707 | None:intergenic |
| GGCAGCGACAAAACAACATT+TGG | 0.412285 | 4.4:-30114999 | MS.gene56484:CDS |
| GAAAACAATTGTTTGTTCCT+CGG | 0.412817 | 4.4:-30108267 | MS.gene56484:CDS |
| ATCAGGAATGACGGTAAATT+GGG | 0.418725 | 4.4:-30111899 | MS.gene56484:CDS |
| CTCCATTTCTCTAGTGCCTC+TGG | 0.422856 | 4.4:+30111570 | None:intergenic |
| TTCAAAAGATCTCCAATCTC+TGG | 0.423187 | 4.4:+30108148 | None:intergenic |
| GTGAATTGTCCCAGCACATT+AGG | 0.424344 | 4.4:-30107717 | MS.gene56484:intron |
| ACTTCTTCAAACCTTGGGTC+TGG | 0.424710 | 4.4:+30107179 | None:intergenic |
| CGTGCTGATTATTTCCTTGT+TGG | 0.425569 | 4.4:-30107071 | MS.gene56484:CDS |
| GTCCATTGCTTAGCTCCATC+TGG | 0.426769 | 4.4:+30112507 | None:intergenic |
| TCAACATCAATTTCCTCAAC+AGG | 0.426786 | 4.4:+30111205 | None:intergenic |
| CTTCATGACAGCGTATGCTT+TGG | 0.427119 | 4.4:+30112341 | None:intergenic |
| GCCTTTACTTCTTCAAACCT+TGG | 0.427852 | 4.4:+30107173 | None:intergenic |
| CTACAACTACGACGAATTGA+TGG | 0.429462 | 4.4:-30107123 | MS.gene56484:CDS |
| CTCAATTCTCCATATATCTC+TGG | 0.434701 | 4.4:+30106586 | None:intergenic |
| ATGCTTTGTCAACTTCCTCT+TGG | 0.435704 | 4.4:+30107021 | None:intergenic |
| TACCAGAGGCACTAGAGAAA+TGG | 0.435864 | 4.4:-30111572 | MS.gene56484:CDS |
| GTTGAAATAAGAGAAGAAGT+TGG | 0.438273 | 4.4:-30107508 | MS.gene56484:CDS |
| GTTAATCACGATCCAGAGAT+TGG | 0.440645 | 4.4:-30108160 | MS.gene56484:CDS |
| AAATTCCAGAATAAAACAAA+TGG | 0.446135 | 4.4:-30110770 | MS.gene56484:CDS |
| GTTTAAGCTGGGAGAAAGCT+TGG | 0.447465 | 4.4:-30111783 | MS.gene56484:CDS |
| GCTCAGGAATGCAGAGTGTT+GGG | 0.447491 | 4.4:+30111833 | None:intergenic |
| CCAAATGTTTGATTTGGAAT+GGG | 0.448607 | 4.4:+30115020 | None:intergenic |
| ATTTGAAGGCTTTCAATACT+GGG | 0.449329 | 4.4:-30112371 | MS.gene56484:CDS |
| GCACGAGCTGAAGAAATTGC+AGG | 0.449587 | 4.4:-30107460 | MS.gene56484:CDS |
| ATGGAGTTTGACTCTTCTGC+AGG | 0.451498 | 4.4:-30111553 | MS.gene56484:CDS |
| TCACAGTGAGATTGTAAAAG+AGG | 0.453012 | 4.4:-30110942 | MS.gene56484:CDS |
| AATTCCAGAATAAAACAAAT+GGG | 0.455147 | 4.4:-30110769 | MS.gene56484:CDS |
| AACATGAAATTTGCAATGAA+TGG | 0.455487 | 4.4:-30107565 | MS.gene56484:CDS |
| TAGATGTGAAGGGTTTAAGC+TGG | 0.457167 | 4.4:-30111795 | MS.gene56484:CDS |
| GCCCTTGGGAATGGAGGATT+AGG | 0.460169 | 4.4:-30112918 | MS.gene56484:CDS |
| GCAACACTAACATTGTAATC+AGG | 0.461165 | 4.4:+30107760 | None:intergenic |
| GTTGCTGAAATGCTAATTCC+CGG | 0.461832 | 4.4:-30107742 | MS.gene56484:CDS |
| ATCGTTTCTCTGAATTTCCC+AGG | 0.466281 | 4.4:+30112572 | None:intergenic |
| TTCCTCAGAGCCTCAGCATA+AGG | 0.466595 | 4.4:+30113495 | None:intergenic |
| CTACCAGTTTGCAGATAATG+AGG | 0.467112 | 4.4:-30110405 | MS.gene56484:intron |
| TCATTTATCAAAGAGAAAAC+AGG | 0.468618 | 4.4:-30110329 | MS.gene56484:CDS |
| CAGGAGCCAGATGCAGCCCT+TGG | 0.468994 | 4.4:-30112933 | MS.gene56484:CDS |
| CCAGATGCAGCCCTTGGGAA+TGG | 0.470381 | 4.4:-30112927 | MS.gene56484:CDS |
| TGTACATCAAACATTGCATC+TGG | 0.471752 | 4.4:+30110293 | None:intergenic |
| GCCAAATGTTTGATTTGGAA+TGG | 0.475175 | 4.4:+30115019 | None:intergenic |
| TTAGCCATGCGAACCATCAT+TGG | 0.477716 | 4.4:+30111010 | None:intergenic |
| TTACTGGGCTCAAATTTCTC+AGG | 0.477856 | 4.4:+30113778 | None:intergenic |
| CCTGGGGATGAATCAATAGA+AGG | 0.480958 | 4.4:-30112000 | MS.gene56484:CDS |
| GCACGCTTTGAAAAGAGATC+AGG | 0.482626 | 4.4:-30111916 | MS.gene56484:CDS |
| ATTAATATCCTAATCAGCTC+AGG | 0.483954 | 4.4:+30111817 | None:intergenic |
| TGATTATTTCCTTGTTGGCA+AGG | 0.485154 | 4.4:-30107066 | MS.gene56484:CDS |
| GCTTATGATGTTCCAATACC+TGG | 0.487169 | 4.4:-30112459 | MS.gene56484:CDS |
| GGGCATTGTTAAATGCAATT+GGG | 0.488583 | 4.4:-30113536 | MS.gene56484:CDS |
| GGGTTACAATTTAGAGGATG+TGG | 0.490297 | 4.4:-30113469 | MS.gene56484:CDS |
| ACGTATAACGAAGGACGCTC+AGG | 0.490723 | 4.4:-30112802 | MS.gene56484:CDS |
| ATTGGGAATTTACAACTCTC+AGG | 0.491640 | 4.4:-30113519 | MS.gene56484:CDS |
| TGAGAAATTTGAGCCCAGTA+AGG | 0.492541 | 4.4:-30113776 | MS.gene56484:CDS |
| AGCTCAGGAATGCAGAGTGT+TGG | 0.492601 | 4.4:+30111832 | None:intergenic |
| AAAATCATAACCAAATGGAT+TGG | 0.492703 | 4.4:-30110701 | MS.gene56484:CDS |
| CCATGCGAACCATCATTGGC+AGG | 0.495713 | 4.4:+30111014 | None:intergenic |
| GTAAAATTCATCACAGATGT+AGG | 0.497209 | 4.4:-30108190 | MS.gene56484:CDS |
| CATGTCTATGGAGTATCTAC+AGG | 0.498390 | 4.4:-30113653 | MS.gene56484:intron |
| TGATCCAAACCTGCCAATGA+TGG | 0.501005 | 4.4:-30111023 | MS.gene56484:CDS |
| ACGGCAGTTACTGAATATCA+TGG | 0.501069 | 4.4:-30108338 | MS.gene56484:CDS |
| CCCAAGGTTTGAAGAAGTAA+AGG | 0.502177 | 4.4:-30107174 | MS.gene56484:CDS |
| GAAAGAAAGAGCAGAAGGAA+AGG | 0.502282 | 4.4:-30107431 | MS.gene56484:intron |
| TATTGAGTTGCCGGATTCGG+TGG | 0.502355 | 4.4:-30111263 | MS.gene56484:CDS |
| TCTGTTACATTCTATACCCT+GGG | 0.504284 | 4.4:-30112017 | MS.gene56484:CDS |
| TACCATTCTCAATAACCTGC+AGG | 0.505260 | 4.4:-30115065 | MS.gene56484:CDS |
| ATGGCTAACCTATGTGTTGT+TGG | 0.505350 | 4.4:-30110995 | MS.gene56484:CDS |
| TCTTGGCACTCCAAGTAGCT+AGG | 0.505786 | 4.4:+30107038 | None:intergenic |
| TGGCATATTCATGGATAGTC+CGG | 0.507007 | 4.4:+30106606 | None:intergenic |
| TTTAAGCTGGGAGAAAGCTT+GGG | 0.507352 | 4.4:-30111782 | MS.gene56484:CDS |
| AGCGTATTCATGAATACAAA+CGG | 0.507526 | 4.4:-30108357 | MS.gene56484:CDS |
| GGGGATATGGACTTAGATAC+AGG | 0.507764 | 4.4:-30112842 | MS.gene56484:CDS |
| TAGGATATTAATAGATGTGA+AGG | 0.509727 | 4.4:-30111806 | MS.gene56484:CDS |
| ATGTCAATCTTGAACACAGC+TGG | 0.511229 | 4.4:-30106650 | MS.gene56484:CDS |
| TGCTGGGACAATTCACTGCC+GGG | 0.512071 | 4.4:+30107724 | None:intergenic |
| CAAAGCGTGCAATGATATCC+TGG | 0.512626 | 4.4:+30111929 | None:intergenic |
| TTAGTAAAATCATAACCAAA+TGG | 0.516483 | 4.4:-30110706 | MS.gene56484:CDS |
| AACACTGAATTACCCTGCAT+GGG | 0.518781 | 4.4:-30112862 | MS.gene56484:CDS |
| ATTTATAGATGGGAAATCCC+TGG | 0.520518 | 4.4:-30112590 | MS.gene56484:intron |
| TCTATGGAGAAGTTATTTCA+GGG | 0.524340 | 4.4:-30112530 | MS.gene56484:CDS |
| ATCTGTTACATTCTATACCC+TGG | 0.525611 | 4.4:-30112018 | MS.gene56484:CDS |
| CAACACTGAATTACCCTGCA+TGG | 0.525876 | 4.4:-30112863 | MS.gene56484:CDS |
| AATGGATTGGAACAGAAGAC+TGG | 0.527079 | 4.4:-30110688 | MS.gene56484:CDS |
| GTGCTGGGACAATTCACTGC+CGG | 0.529700 | 4.4:+30107723 | None:intergenic |
| TACAAATTGGAACTCTCGAT+GGG | 0.530143 | 4.4:-30107537 | MS.gene56484:CDS |
| TACCACCACTTTATCTGGAA+GGG | 0.530834 | 4.4:+30111873 | None:intergenic |
| CATATAAATTCAGCAGTGAC+CGG | 0.533068 | 4.4:-30106625 | MS.gene56484:CDS |
| AGGAGCCAGATGCAGCCCTT+GGG | 0.536797 | 4.4:-30112932 | MS.gene56484:CDS |
| TGTGTTTAGTACAGCTGGGA+TGG | 0.537168 | 4.4:-30107605 | MS.gene56484:intron |
| GCTAACCTATGTGTTGTTGG+TGG | 0.537986 | 4.4:-30110992 | MS.gene56484:CDS |
| CCACCATAAACTTGCGATTG+TGG | 0.538883 | 4.4:-30112422 | MS.gene56484:CDS |
| GAATTGATGGGATCTTTGGA+AGG | 0.539315 | 4.4:-30107110 | MS.gene56484:CDS |
| CTAAGTCCATATCCCCATGC+AGG | 0.541539 | 4.4:+30112849 | None:intergenic |
| GGATCTTTGGAAGGGAATGA+AGG | 0.543201 | 4.4:-30107101 | MS.gene56484:CDS |
| GGCCTAATCCTCCATTCCCA+AGG | 0.543436 | 4.4:+30112916 | None:intergenic |
| TAAGGTCGGGATTACAGAAA+CGG | 0.543894 | 4.4:+30110726 | None:intergenic |
| TTAAGGAAAGAAAGAGCAGA+AGG | 0.545172 | 4.4:-30107436 | MS.gene56484:CDS |
| CTTCTATTGATTCATCCCCA+GGG | 0.545352 | 4.4:+30112001 | None:intergenic |
| GACAAACGAGAAGCAGAAGA+TGG | 0.548966 | 4.4:-30111091 | MS.gene56484:CDS |
| AATTTCCTCAACAGGATCAT+CGG | 0.550548 | 4.4:+30111213 | None:intergenic |
| AGATGTGAAGGGTTTAAGCT+GGG | 0.551577 | 4.4:-30111794 | MS.gene56484:CDS |
| TGCAGTTTGTACCAGACCCA+AGG | 0.553369 | 4.4:-30107190 | MS.gene56484:intron |
| GATGGAGCTAAGCAATGGAC+TGG | 0.553513 | 4.4:-30112504 | MS.gene56484:CDS |
| GAAGTTATTTCAGGGCCAGA+TGG | 0.555318 | 4.4:-30112522 | MS.gene56484:CDS |
| GTAAAGGCATATGTTAGAAG+TGG | 0.555712 | 4.4:-30107158 | MS.gene56484:CDS |
| ATTATGCTCAGCCTCTCTCC+AGG | 0.555876 | 4.4:-30111947 | MS.gene56484:CDS |
| CTTGGCACTCCAAGTAGCTA+GGG | 0.557235 | 4.4:+30107039 | None:intergenic |
| TTTATAGATGGGAAATCCCT+GGG | 0.557702 | 4.4:-30112589 | MS.gene56484:intron |
| ATGGGGTGACACCTAGAAGA+TGG | 0.559245 | 4.4:-30110751 | MS.gene56484:CDS |
| CCTGCCAATGATGGTTCGCA+TGG | 0.561781 | 4.4:-30111014 | MS.gene56484:CDS |
| GTACCACCACTTTATCTGGA+AGG | 0.562027 | 4.4:+30111872 | None:intergenic |
| TACAACTACGACGAATTGAT+GGG | 0.563220 | 4.4:-30107122 | MS.gene56484:CDS |
| TGCCTGCAGGTTATTGAGAA+TGG | 0.564183 | 4.4:+30115063 | None:intergenic |
| GGACTCCCTTCCAGATAAAG+TGG | 0.565184 | 4.4:-30111878 | MS.gene56484:CDS |
| CGAAGAAGAAGAAGATGAAG+TGG | 0.565544 | 4.4:-30111119 | MS.gene56484:CDS |
| TTGGGAATGGAGGATTAGGC+CGG | 0.569055 | 4.4:-30112914 | MS.gene56484:CDS |
| TGCAACGAATTCATTTGAAG+TGG | 0.569514 | 4.4:+30113861 | None:intergenic |
| AATTTATGATAAGGGAATCA+CGG | 0.571565 | 4.4:+30113728 | None:intergenic |
| CTAGAAAGCAAGAAGCAAGC+CGG | 0.574391 | 4.4:+30112895 | None:intergenic |
| GATGCAGCCCTTGGGAATGG+AGG | 0.575620 | 4.4:-30112924 | MS.gene56484:CDS |
| CGGCAGTTACTGAATATCAT+GGG | 0.576863 | 4.4:-30108337 | MS.gene56484:CDS |
| GAAATTGGCTGTACTTCGCA+AGG | 0.577155 | 4.4:-30110651 | MS.gene56484:intron |
| TCTGTGTGTTTAGTACAGCT+GGG | 0.577930 | 4.4:-30107609 | MS.gene56484:intron |
| GGCCAGATGGAGCTAAGCAA+TGG | 0.578954 | 4.4:-30112509 | MS.gene56484:CDS |
| GTTGCAAAGTAAGCCTTACT+GGG | 0.579338 | 4.4:+30113763 | None:intergenic |
| TTTATTATTTCCACATGTCG+AGG | 0.583310 | 4.4:+30111522 | None:intergenic |
| CAACATATGTTCAAGCCAAG+AGG | 0.583384 | 4.4:-30108216 | MS.gene56484:CDS |
| TATGGACTTAGATACAGGTA+TGG | 0.584953 | 4.4:-30112837 | MS.gene56484:CDS |
| GAACTGAAAGAACGACTCAT+CGG | 0.585719 | 4.4:-30114892 | MS.gene56484:CDS |
| AGGTGAGCTTGAATGCCTGC+AGG | 0.588103 | 4.4:+30115050 | None:intergenic |
| AGGATATTAATAGATGTGAA+GGG | 0.588908 | 4.4:-30111805 | MS.gene56484:CDS |
| TAGGGAAGTCCTTGCCAACA+AGG | 0.589757 | 4.4:+30107057 | None:intergenic |
| GCTGAGGCTCTGAGGAAACT+GGG | 0.590579 | 4.4:-30113489 | MS.gene56484:CDS |
| GGATTTACTTCCTCGACATG+TGG | 0.591364 | 4.4:-30111532 | MS.gene56484:CDS |
| GTTTAGTACAGCTGGGATGG+AGG | 0.592504 | 4.4:-30107602 | MS.gene56484:intron |
| TCGTTTCTCTGAATTTCCCA+GGG | 0.593399 | 4.4:+30112573 | None:intergenic |
| TTGGAAGGGAATGAAGGCTA+TGG | 0.593881 | 4.4:-30107095 | MS.gene56484:CDS |
| AGATATATGGAGAATTGAGC+CGG | 0.595292 | 4.4:-30106582 | MS.gene56484:CDS |
| TTATCTATACCTAATGTGCT+GGG | 0.596409 | 4.4:+30107708 | None:intergenic |
| CAACATATGAATATTATGAG+AGG | 0.596709 | 4.4:-30113699 | MS.gene56484:CDS |
| TCTTGCCGATGATCCTGTTG+AGG | 0.596729 | 4.4:-30111218 | MS.gene56484:CDS |
| TATAACGAAGGACGCTCAGG+AGG | 0.602142 | 4.4:-30112799 | MS.gene56484:CDS |
| GTACAAATTGGAACTCTCGA+TGG | 0.602544 | 4.4:-30107538 | MS.gene56484:CDS |
| GCCTAATCCTCCATTCCCAA+GGG | 0.606925 | 4.4:+30112917 | None:intergenic |
| AGGGTAATTCAGTGTTGCCA+AGG | 0.609943 | 4.4:+30112869 | None:intergenic |
| TAAGTCCATATCCCCATGCA+GGG | 0.610745 | 4.4:+30112850 | None:intergenic |
| AATTGATGGGATCTTTGGAA+GGG | 0.613386 | 4.4:-30107109 | MS.gene56484:CDS |
| GTCCTTATGCTGAGGCTCTG+AGG | 0.613621 | 4.4:-30113497 | MS.gene56484:CDS |
| ATGAAGTTGTTGCTGAGTAT+GGG | 0.614498 | 4.4:-30111342 | MS.gene56484:CDS |
| GAAGAAGAAGAAGATGAAGT+GGG | 0.616994 | 4.4:-30111118 | MS.gene56484:CDS |
| TGAAAAGAGATCAGGAATGA+CGG | 0.617393 | 4.4:-30111908 | MS.gene56484:CDS |
| TGTCATGAAGAATGCAGAGA+AGG | 0.620102 | 4.4:-30112328 | MS.gene56484:intron |
| CACGAGCTGAAGAAATTGCA+GGG | 0.620721 | 4.4:-30107459 | MS.gene56484:CDS |
| AACATATGAATATTATGAGA+GGG | 0.623422 | 4.4:-30113698 | MS.gene56484:CDS |
| GATTTGGAATGGGAATGTAA+AGG | 0.624865 | 4.4:+30115030 | None:intergenic |
| GGAGCTAAGCAATGGACTGG+AGG | 0.628655 | 4.4:-30112501 | MS.gene56484:CDS |
| TGCAATGATATCCTGGAGAG+AGG | 0.629144 | 4.4:+30111936 | None:intergenic |
| AAAGAACGACTCATCGGACA+AGG | 0.630397 | 4.4:-30114886 | MS.gene56484:intron |
| AAGAAGAAGAAGATGAAGTG+GGG | 0.630558 | 4.4:-30111117 | MS.gene56484:CDS |
| ATTCAAACAACGTATAACGA+AGG | 0.632464 | 4.4:-30112811 | MS.gene56484:CDS |
| ACAGCTGGGATGGAGGCCAG+TGG | 0.632889 | 4.4:-30107595 | MS.gene56484:CDS |
| AATGAAAGAATTGAGTGCTG+AGG | 0.637244 | 4.4:-30108293 | MS.gene56484:CDS |
| TTTGAAGGCTTTCAATACTG+GGG | 0.639183 | 4.4:-30112370 | MS.gene56484:CDS |
| ATGGATTGGAACAGAAGACT+GGG | 0.645354 | 4.4:-30110687 | MS.gene56484:CDS |
| TATTGGAACATCATAAGCAA+CGG | 0.649331 | 4.4:+30112464 | None:intergenic |
| CCACAATCGCAAGTTTATGG+TGG | 0.651435 | 4.4:+30112422 | None:intergenic |
| ACTCTCAGGTCCTTATGCTG+AGG | 0.656696 | 4.4:-30113505 | MS.gene56484:CDS |
| GAAGAAAATGATGATGATGA+CGG | 0.656959 | 4.4:-30111142 | MS.gene56484:CDS |
| ATTCCAGAATAAAACAAATG+GGG | 0.658074 | 4.4:-30110768 | MS.gene56484:CDS |
| TGTTGCCAGCGACAAAGCAG+CGG | 0.667849 | 4.4:-30114914 | MS.gene56484:CDS |
| TAGCTACTTGGAGTGCCAAG+AGG | 0.674127 | 4.4:-30107036 | MS.gene56484:CDS |
| GTGCCTCTGGTAGAACTGTG+TGG | 0.675525 | 4.4:+30111583 | None:intergenic |
| ATGAGGATCTGCAATCAGAG+TGG | 0.676696 | 4.4:-30110388 | MS.gene56484:CDS |
| ACACTGAATTACCCTGCATG+GGG | 0.680238 | 4.4:-30112861 | MS.gene56484:CDS |
| CTCCCTTCCAGATAAAGTGG+TGG | 0.681896 | 4.4:-30111875 | MS.gene56484:CDS |
| AGTTGCTGAAAACTGGCTTG+AGG | 0.695370 | 4.4:-30112775 | MS.gene56484:intron |
| AAACCACACAGTTCTACCAG+AGG | 0.720864 | 4.4:-30111586 | MS.gene56484:CDS |
| CTGTTACATTCTATACCCTG+GGG | 0.720986 | 4.4:-30112016 | MS.gene56484:CDS |
| ACAAATTGGAACTCTCGATG+GGG | 0.737432 | 4.4:-30107536 | MS.gene56484:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 30106568 | 30115097 | 30106568 | ID=MS.gene56484 |
| chr4.4 | mRNA | 30106568 | 30115097 | 30106568 | ID=MS.gene56484.t1;Parent=MS.gene56484 |
| chr4.4 | exon | 30114887 | 30115097 | 30114887 | ID=MS.gene56484.t1.exon1;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30114887 | 30115097 | 30114887 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30113654 | 30113886 | 30113654 | ID=MS.gene56484.t1.exon2;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30113654 | 30113886 | 30113654 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30113461 | 30113562 | 30113461 | ID=MS.gene56484.t1.exon3;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30113461 | 30113562 | 30113461 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30112776 | 30112952 | 30112776 | ID=MS.gene56484.t1.exon4;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30112776 | 30112952 | 30112776 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30112329 | 30112604 | 30112329 | ID=MS.gene56484.t1.exon5;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30112329 | 30112604 | 30112329 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30111769 | 30112040 | 30111769 | ID=MS.gene56484.t1.exon6;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30111769 | 30112040 | 30111769 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30111506 | 30111623 | 30111506 | ID=MS.gene56484.t1.exon7;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30111506 | 30111623 | 30111506 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30110919 | 30111371 | 30110919 | ID=MS.gene56484.t1.exon8;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30110919 | 30111371 | 30110919 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30110652 | 30110804 | 30110652 | ID=MS.gene56484.t1.exon9;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30110652 | 30110804 | 30110652 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30110292 | 30110420 | 30110292 | ID=MS.gene56484.t1.exon10;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30110292 | 30110420 | 30110292 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30108147 | 30108383 | 30108147 | ID=MS.gene56484.t1.exon11;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30108147 | 30108383 | 30108147 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30107718 | 30107794 | 30107718 | ID=MS.gene56484.t1.exon12;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30107718 | 30107794 | 30107718 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30107432 | 30107618 | 30107432 | ID=MS.gene56484.t1.exon13;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30107432 | 30107618 | 30107432 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30107007 | 30107207 | 30107007 | ID=MS.gene56484.t1.exon14;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30107007 | 30107207 | 30107007 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| chr4.4 | exon | 30106568 | 30106684 | 30106568 | ID=MS.gene56484.t1.exon15;Parent=MS.gene56484.t1 |
| chr4.4 | CDS | 30106568 | 30106684 | 30106568 | ID=cds.MS.gene56484.t1;Parent=MS.gene56484.t1 |
| Gene Sequence |
| Protein sequence |
