Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79290.t1 | XP_013468480.1 | 85.4 | 371 | 54 | 0 | 1 | 371 | 1 | 371 | 1.90E-165 | 592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79290.t1 | Q94K75 | 37.1 | 418 | 189 | 15 | 1 | 368 | 3 | 396 | 5.0e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79290.t1 | A0A072VL21 | 85.4 | 371 | 54 | 0 | 1 | 371 | 1 | 371 | 1.3e-165 | 592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene79290 | 0.843455 | 1.39E-58 | -1.69E-46 |
| MS.gene049151 | MS.gene79290 | 0.841024 | 6.10E-58 | -1.69E-46 |
| MS.gene049153 | MS.gene79290 | 0.843746 | 1.16E-58 | -1.69E-46 |
| MS.gene049195 | MS.gene79290 | 0.821563 | 3.78E-53 | -1.69E-46 |
| MS.gene049260 | MS.gene79290 | 0.85156 | 8.20E-61 | -1.69E-46 |
| MS.gene049297 | MS.gene79290 | 0.888888 | 3.96E-73 | -1.69E-46 |
| MS.gene04933 | MS.gene79290 | 0.838028 | 3.67E-57 | -1.69E-46 |
| MS.gene049346 | MS.gene79290 | 0.800893 | 1.16E-48 | -1.69E-46 |
| MS.gene049378 | MS.gene79290 | 0.858916 | 5.93E-63 | -1.69E-46 |
| MS.gene049426 | MS.gene79290 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene049629 | MS.gene79290 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene79290 | 0.903711 | 2.61E-79 | -1.69E-46 |
| MS.gene049910 | MS.gene79290 | 0.852408 | 4.71E-61 | -1.69E-46 |
| MS.gene049915 | MS.gene79290 | 0.826183 | 3.12E-54 | -1.69E-46 |
| MS.gene050099 | MS.gene79290 | 0.846072 | 2.73E-59 | -1.69E-46 |
| MS.gene050226 | MS.gene79290 | 0.898099 | 7.39E-77 | -1.69E-46 |
| MS.gene050227 | MS.gene79290 | 0.900397 | 7.63E-78 | -1.69E-46 |
| MS.gene050228 | MS.gene79290 | 0.897945 | 8.59E-77 | -1.69E-46 |
| MS.gene050301 | MS.gene79290 | 0.858078 | 1.05E-62 | -1.69E-46 |
| MS.gene050319 | MS.gene79290 | -0.844377 | 7.85E-59 | -1.69E-46 |
| MS.gene050330 | MS.gene79290 | -0.860218 | 2.41E-63 | -1.69E-46 |
| MS.gene050397 | MS.gene79290 | 0.813567 | 2.40E-51 | -1.69E-46 |
| MS.gene050438 | MS.gene79290 | 0.833743 | 4.48E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene79290 | 0.826494 | 2.63E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene79290 | 0.814016 | 1.91E-51 | -1.69E-46 |
| MS.gene050516 | MS.gene79290 | 0.83408 | 3.69E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene79290 | 0.812053 | 5.14E-51 | -1.69E-46 |
| MS.gene050558 | MS.gene79290 | 0.885068 | 1.12E-71 | -1.69E-46 |
| MS.gene050560 | MS.gene79290 | 0.818263 | 2.15E-52 | -1.69E-46 |
| MS.gene050623 | MS.gene79290 | -0.903142 | 4.71E-79 | -1.69E-46 |
| MS.gene050642 | MS.gene79290 | 0.91149 | 5.74E-83 | -1.69E-46 |
| MS.gene050650 | MS.gene79290 | 0.80867 | 2.76E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene79290 | 0.834613 | 2.71E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene79290 | 0.83414 | 3.56E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene79290 | 0.823354 | 1.45E-53 | -1.69E-46 |
| MS.gene050762 | MS.gene79290 | 0.832773 | 7.81E-56 | -1.69E-46 |
| MS.gene050763 | MS.gene79290 | 0.835823 | 1.34E-56 | -1.69E-46 |
| MS.gene050787 | MS.gene79290 | 0.847544 | 1.08E-59 | -1.69E-46 |
| MS.gene050820 | MS.gene79290 | 0.831263 | 1.84E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene79290 | 0.801809 | 7.56E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene79290 | -0.834087 | 3.67E-56 | -1.69E-46 |
| MS.gene051257 | MS.gene79290 | 0.835569 | 1.55E-56 | -1.69E-46 |
| MS.gene051349 | MS.gene79290 | 0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene79290 | 0.80077 | 1.23E-48 | -1.69E-46 |
| MS.gene051535 | MS.gene79290 | 0.801516 | 8.68E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene79290 | 0.880221 | 6.56E-70 | -1.69E-46 |
| MS.gene051663 | MS.gene79290 | 0.90287 | 6.23E-79 | -1.69E-46 |
| MS.gene051860 | MS.gene79290 | 0.895972 | 5.76E-76 | -1.69E-46 |
| MS.gene051983 | MS.gene79290 | 0.888697 | 4.69E-73 | -1.69E-46 |
| MS.gene052011 | MS.gene79290 | -0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene052077 | MS.gene79290 | 0.855039 | 8.24E-62 | -1.69E-46 |
| MS.gene052078 | MS.gene79290 | 0.826283 | 2.95E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene79290 | 0.85887 | 6.12E-63 | -1.69E-46 |
| MS.gene052178 | MS.gene79290 | 0.833991 | 3.88E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene79290 | 0.831259 | 1.85E-55 | -1.69E-46 |
| MS.gene052207 | MS.gene79290 | 0.834946 | 2.23E-56 | -1.69E-46 |
| MS.gene052253 | MS.gene79290 | 0.817492 | 3.21E-52 | -1.69E-46 |
| MS.gene052255 | MS.gene79290 | 0.822585 | 2.19E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene79290 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene79290 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene79290 | -0.849648 | 2.83E-60 | -1.69E-46 |
| MS.gene052323 | MS.gene79290 | 0.804295 | 2.31E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene79290 | 0.825367 | 4.87E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene79290 | 0.823611 | 1.26E-53 | -1.69E-46 |
| MS.gene052389 | MS.gene79290 | 0.822621 | 2.15E-53 | -1.69E-46 |
| MS.gene052600 | MS.gene79290 | 0.875112 | 3.98E-68 | -1.69E-46 |
| MS.gene052856 | MS.gene79290 | 0.822153 | 2.76E-53 | -1.69E-46 |
| MS.gene052858 | MS.gene79290 | 0.804003 | 2.66E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene79290 | 0.806702 | 7.23E-50 | -1.69E-46 |
| MS.gene053085 | MS.gene79290 | 0.805244 | 1.47E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene79290 | 0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene053559 | MS.gene79290 | 0.812116 | 4.98E-51 | -1.69E-46 |
| MS.gene053577 | MS.gene79290 | 0.800846 | 1.19E-48 | -1.69E-46 |
| MS.gene053630 | MS.gene79290 | 0.815517 | 8.88E-52 | -1.69E-46 |
| MS.gene053811 | MS.gene79290 | 0.80576 | 1.14E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene79290 | 0.939275 | 1.67E-99 | -1.69E-46 |
| MS.gene053907 | MS.gene79290 | 0.810995 | 8.74E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene79290 | 0.82184 | 3.26E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene79290 | 0.811326 | 7.40E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene79290 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene79290 | 0.814177 | 1.76E-51 | -1.69E-46 |
| MS.gene054184 | MS.gene79290 | 0.839643 | 1.40E-57 | -1.69E-46 |
| MS.gene054185 | MS.gene79290 | 0.84191 | 3.57E-58 | -1.69E-46 |
| MS.gene054349 | MS.gene79290 | 0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene79290 | 0.83547 | 1.65E-56 | -1.69E-46 |
| MS.gene054473 | MS.gene79290 | 0.871507 | 6.48E-67 | -1.69E-46 |
| MS.gene054542 | MS.gene79290 | 0.819777 | 9.72E-53 | -1.69E-46 |
| MS.gene054667 | MS.gene79290 | 0.83356 | 4.97E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene79290 | 0.884075 | 2.61E-71 | -1.69E-46 |
| MS.gene054942 | MS.gene79290 | 0.906722 | 1.10E-80 | -1.69E-46 |
| MS.gene054983 | MS.gene79290 | 0.852934 | 3.33E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene79290 | 0.844141 | 9.08E-59 | -1.69E-46 |
| MS.gene055356 | MS.gene79290 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene79290 | 0.830441 | 2.93E-55 | -1.69E-46 |
| MS.gene055390 | MS.gene79290 | 0.825959 | 3.53E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene79290 | 0.895946 | 5.91E-76 | -1.69E-46 |
| MS.gene055428 | MS.gene79290 | 0.880968 | 3.55E-70 | -1.69E-46 |
| MS.gene05553 | MS.gene79290 | 0.817022 | 4.09E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene79290 | 0.843493 | 1.35E-58 | -1.69E-46 |
| MS.gene055712 | MS.gene79290 | 0.83872 | 2.43E-57 | -1.69E-46 |
| MS.gene055816 | MS.gene79290 | -0.821284 | 4.38E-53 | -1.69E-46 |
| MS.gene055859 | MS.gene79290 | 0.821249 | 4.46E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene79290 | -0.841227 | 5.40E-58 | -1.69E-46 |
| MS.gene056400 | MS.gene79290 | 0.80879 | 2.60E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene79290 | 0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene056612 | MS.gene79290 | 0.828433 | 9.01E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene79290 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene056875 | MS.gene79290 | 0.87483 | 4.97E-68 | -1.69E-46 |
| MS.gene056899 | MS.gene79290 | -0.805884 | 1.08E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene79290 | 0.883352 | 4.82E-71 | -1.69E-46 |
| MS.gene05702 | MS.gene79290 | 0.824405 | 8.22E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene79290 | 0.891365 | 4.25E-74 | -1.69E-46 |
| MS.gene057200 | MS.gene79290 | 0.828736 | 7.61E-55 | -1.69E-46 |
| MS.gene057245 | MS.gene79290 | 0.84663 | 1.93E-59 | -1.69E-46 |
| MS.gene057260 | MS.gene79290 | 0.846862 | 1.66E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene79290 | 0.874709 | 5.46E-68 | -1.69E-46 |
| MS.gene057448 | MS.gene79290 | 0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene057449 | MS.gene79290 | 0.801695 | 7.98E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene79290 | 0.820507 | 6.61E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene79290 | 0.872404 | 3.26E-67 | -1.69E-46 |
| MS.gene057539 | MS.gene79290 | 0.815045 | 1.13E-51 | -1.69E-46 |
| MS.gene057750 | MS.gene79290 | 0.830329 | 3.12E-55 | -1.69E-46 |
| MS.gene057754 | MS.gene79290 | 0.821216 | 4.54E-53 | -1.69E-46 |
| MS.gene057967 | MS.gene79290 | 0.815418 | 9.34E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene79290 | 0.895611 | 8.13E-76 | -1.69E-46 |
| MS.gene05811 | MS.gene79290 | 0.905599 | 3.62E-80 | -1.69E-46 |
| MS.gene058139 | MS.gene79290 | 0.811412 | 7.09E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene79290 | 0.861882 | 7.50E-64 | -1.69E-46 |
| MS.gene058168 | MS.gene79290 | 0.812086 | 5.06E-51 | -1.69E-46 |
| MS.gene058182 | MS.gene79290 | 0.820652 | 6.13E-53 | -1.69E-46 |
| MS.gene058276 | MS.gene79290 | 0.810097 | 1.37E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene79290 | 0.811429 | 7.03E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene79290 | 0.807339 | 5.30E-50 | -1.69E-46 |
| MS.gene058661 | MS.gene79290 | -0.807589 | 4.70E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene79290 | 0.848903 | 4.55E-60 | -1.69E-46 |
| MS.gene058749 | MS.gene79290 | 0.86289 | 3.68E-64 | -1.69E-46 |
| MS.gene058833 | MS.gene79290 | 0.87014 | 1.83E-66 | -1.69E-46 |
| MS.gene058845 | MS.gene79290 | 0.850097 | 2.12E-60 | -1.69E-46 |
| MS.gene058851 | MS.gene79290 | 0.802534 | 5.36E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene79290 | 0.838448 | 2.86E-57 | -1.69E-46 |
| MS.gene058982 | MS.gene79290 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene059033 | MS.gene79290 | -0.804528 | 2.07E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene79290 | 0.882248 | 1.22E-70 | -1.69E-46 |
| MS.gene059124 | MS.gene79290 | 0.830502 | 2.83E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene79290 | 0.820913 | 5.33E-53 | -1.69E-46 |
| MS.gene059247 | MS.gene79290 | 0.816274 | 6.02E-52 | -1.69E-46 |
| MS.gene059249 | MS.gene79290 | 0.804099 | 2.54E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene79290 | 0.842861 | 2.00E-58 | -1.69E-46 |
| MS.gene059294 | MS.gene79290 | 0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene059421 | MS.gene79290 | 0.819888 | 9.17E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene79290 | 0.871937 | 4.67E-67 | -1.69E-46 |
| MS.gene059597 | MS.gene79290 | 0.838864 | 2.23E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene79290 | 0.802505 | 5.44E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene79290 | 0.915844 | 3.63E-85 | -1.69E-46 |
| MS.gene059894 | MS.gene79290 | 0.849014 | 4.24E-60 | -1.69E-46 |
| MS.gene059899 | MS.gene79290 | 0.848942 | 4.44E-60 | -1.69E-46 |
| MS.gene060084 | MS.gene79290 | 0.817624 | 2.99E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene79290 | -0.824462 | 7.97E-54 | -1.69E-46 |
| MS.gene060165 | MS.gene79290 | 0.814152 | 1.78E-51 | -1.69E-46 |
| MS.gene06037 | MS.gene79290 | 0.808828 | 2.56E-50 | -1.69E-46 |
| MS.gene060404 | MS.gene79290 | 0.820009 | 8.60E-53 | -1.69E-46 |
| MS.gene060476 | MS.gene79290 | 0.856509 | 3.07E-62 | -1.69E-46 |
| MS.gene060480 | MS.gene79290 | 0.826902 | 2.10E-54 | -1.69E-46 |
| MS.gene060619 | MS.gene79290 | 0.806911 | 6.53E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene79290 | 0.823385 | 1.43E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene79290 | 0.814181 | 1.76E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene79290 | 0.805355 | 1.39E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene79290 | 0.820218 | 7.70E-53 | -1.69E-46 |
| MS.gene060994 | MS.gene79290 | 0.835384 | 1.73E-56 | -1.69E-46 |
| MS.gene060998 | MS.gene79290 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene061000 | MS.gene79290 | 0.83055 | 2.76E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene79290 | -0.831535 | 1.58E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene79290 | 0.865783 | 4.60E-65 | -1.69E-46 |
| MS.gene061085 | MS.gene79290 | 0.810707 | 1.01E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene79290 | -0.830137 | 3.48E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79290.t1 | MTR_1g069855 | 94.070 | 371 | 22 | 0 | 1 | 371 | 1 | 371 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79290.t1 | AT1G06190 | 36.806 | 432 | 171 | 14 | 1 | 368 | 3 | 396 | 8.05e-47 | 164 |
| MS.gene79290.t1 | AT1G06190 | 36.597 | 429 | 168 | 15 | 4 | 368 | 11 | 399 | 1.69e-45 | 161 |
| MS.gene79290.t1 | AT1G06190 | 42.960 | 277 | 102 | 10 | 1 | 254 | 3 | 246 | 1.40e-37 | 137 |
| MS.gene79290.t1 | AT1G06190 | 36.223 | 323 | 118 | 8 | 105 | 368 | 1 | 294 | 1.94e-31 | 121 |
| MS.gene79290.t1 | AT1G06190 | 36.223 | 323 | 118 | 8 | 105 | 368 | 1 | 294 | 1.94e-31 | 121 |
| MS.gene79290.t1 | AT2G31150 | 40.526 | 190 | 78 | 8 | 69 | 253 | 28 | 187 | 9.72e-18 | 83.2 |
Find 92 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATCTCCCTTCTTCATTT+TGG | 0.199446 | 1.4:+56827310 | None:intergenic |
| ATTCATTCTCATGTCAAAAT+TGG | 0.207354 | 1.4:-56828244 | MS.gene79290:CDS |
| AGGAGATTGTTGAATTATTT+AGG | 0.215094 | 1.4:-56827985 | MS.gene79290:CDS |
| ATCCACACCCTCATTATTAT+AGG | 0.236533 | 1.4:+56827424 | None:intergenic |
| CACTGAAGATGTCTGAATTA+AGG | 0.272149 | 1.4:-56827367 | MS.gene79290:CDS |
| CAACAGAGTGTTTCTTCAAT+AGG | 0.293426 | 1.4:+56827855 | None:intergenic |
| TTCCCGTGTTCACGTGGTTT+TGG | 0.304722 | 1.4:-56828313 | MS.gene79290:CDS |
| GAATCATCATCAGAAAATTC+AGG | 0.322009 | 1.4:+56827464 | None:intergenic |
| GTGGAACAGGAGACTTTCTT+TGG | 0.325465 | 1.4:+56827657 | None:intergenic |
| CACGGGAAACACTTGTCTTC+TGG | 0.338216 | 1.4:+56828328 | None:intergenic |
| CTTGCAACTGGTCAGAGTTA+AGG | 0.357514 | 1.4:+56827792 | None:intergenic |
| GGTCATCAAGAGGCAGAAAT+AGG | 0.364129 | 1.4:-56828135 | MS.gene79290:CDS |
| CCTGAATTATGCGATACTAA+TGG | 0.364548 | 1.4:+56828046 | None:intergenic |
| CTCATTATTATAGGTTTGTT+CGG | 0.368039 | 1.4:+56827433 | None:intergenic |
| AGAAGCCAACATTGCTTCTT+CGG | 0.370636 | 1.4:-56827699 | MS.gene79290:CDS |
| ATTGGTTACTTTCTTGCAAC+TGG | 0.376988 | 1.4:+56827780 | None:intergenic |
| GCTTCTCGAGACTCGCCCTT+TGG | 0.377737 | 1.4:+56827716 | None:intergenic |
| TCATTATCTTCAGTACCTAT+TGG | 0.378379 | 1.4:+56827584 | None:intergenic |
| CAAGAAAGTAACCAATATAA+TGG | 0.383785 | 1.4:-56827773 | MS.gene79290:CDS |
| ATCTCCTTCTCTCTGGGGCC+AGG | 0.383899 | 1.4:+56828001 | None:intergenic |
| CCATTAGTATCGCATAATTC+AGG | 0.386197 | 1.4:-56828046 | MS.gene79290:CDS |
| TGAAGATAATGAGAACATTC+AGG | 0.393717 | 1.4:-56827573 | MS.gene79290:CDS |
| TCTCCTTCTCTCTGGGGCCA+GGG | 0.398569 | 1.4:+56828002 | None:intergenic |
| ACTGAAGATGTCTGAATTAA+GGG | 0.399378 | 1.4:-56827366 | MS.gene79290:CDS |
| TTCAACAATCTCCTTCTCTC+TGG | 0.400512 | 1.4:+56827994 | None:intergenic |
| TCAATGTCAGACACAAGTTT+AGG | 0.403640 | 1.4:+56827515 | None:intergenic |
| AAAATTGGAGGACTAAAGTA+TGG | 0.407218 | 1.4:-56828229 | MS.gene79290:CDS |
| ATTTCTCAAGGCAAAACAAT+AGG | 0.425700 | 1.4:-56828162 | MS.gene79290:CDS |
| TTGCTTCTTCGGCTCGGCCT+CGG | 0.432797 | 1.4:-56827688 | MS.gene79290:CDS |
| TCTGGGGCCAGGGGATGAAG+TGG | 0.433553 | 1.4:+56828012 | None:intergenic |
| CTCCTTCTCTCTGGGGCCAG+GGG | 0.453590 | 1.4:+56828003 | None:intergenic |
| TGGTACCTAACTCGTGGAAC+AGG | 0.454058 | 1.4:+56827644 | None:intergenic |
| AGTCTCCTGTTCCACGAGTT+AGG | 0.454367 | 1.4:-56827649 | MS.gene79290:CDS |
| GAGATACTAACCAACGTTGT+TGG | 0.460708 | 1.4:+56829981 | None:intergenic |
| GATACTAATGCAATACCAAT+AGG | 0.463250 | 1.4:-56827599 | MS.gene79290:CDS |
| CCAGCCTCTCTCTAATAACT+TGG | 0.465102 | 1.4:-56827624 | MS.gene79290:CDS |
| CATTCTCATGTCAAAATTGG+AGG | 0.466208 | 1.4:-56828241 | MS.gene79290:CDS |
| GCATAATTCAGGAAAATTCC+AGG | 0.470969 | 1.4:-56828035 | MS.gene79290:CDS |
| CCAAGTTATTAGAGAGAGGC+TGG | 0.475081 | 1.4:+56827624 | None:intergenic |
| GGCAGAAATAGGAACGATGA+TGG | 0.476321 | 1.4:-56828124 | MS.gene79290:CDS |
| GTATATTCATGCACTTCTCT+AGG | 0.477464 | 1.4:-56828277 | MS.gene79290:CDS |
| GAGCAAGGAAAGAGAAGTAA+TGG | 0.479561 | 1.4:-56827833 | MS.gene79290:CDS |
| TCAGACACAAGTTTAGGTTC+TGG | 0.480757 | 1.4:+56827521 | None:intergenic |
| TCAACAATCTCCTTCTCTCT+GGG | 0.484672 | 1.4:+56827995 | None:intergenic |
| TTCTGATTCAGGTGCTCCAA+AGG | 0.490898 | 1.4:-56827732 | MS.gene79290:CDS |
| GGCCAGGGGATGAAGTGGCC+TGG | 0.491170 | 1.4:+56828017 | None:intergenic |
| CAAAGTCTCGTGGCGTGAAA+GGG | 0.496245 | 1.4:-56827337 | MS.gene79290:CDS |
| GCAAAGTCTCGTGGCGTGAA+AGG | 0.497859 | 1.4:-56827338 | MS.gene79290:CDS |
| CGAACAAACCTATAATAATG+AGG | 0.509607 | 1.4:-56827432 | MS.gene79290:CDS |
| TTCAAGCTCGGTTGCGTGAG+AGG | 0.514959 | 1.4:-56827958 | MS.gene79290:CDS |
| TTCCAGGCCACTTCATCCCC+TGG | 0.519556 | 1.4:-56828019 | MS.gene79290:CDS |
| AATCATCATCAGAAAATTCA+GGG | 0.519668 | 1.4:+56827465 | None:intergenic |
| AGGGTTCTCCAAAATGAAGA+AGG | 0.519774 | 1.4:-56827318 | MS.gene79290:CDS |
| AACCTATAATAATGAGGGTG+TGG | 0.526342 | 1.4:-56827426 | MS.gene79290:CDS |
| TAGGTTGAGGAGGGAATCTA+CGG | 0.533723 | 1.4:+56827874 | None:intergenic |
| AGAAGTAATGGAGAGGACGA+TGG | 0.534478 | 1.4:-56827821 | MS.gene79290:CDS |
| TCTGATTCAGGTGCTCCAAA+GGG | 0.540137 | 1.4:-56827731 | MS.gene79290:CDS |
| ATCCCCTGGCCCCAGAGAGA+AGG | 0.545660 | 1.4:-56828005 | MS.gene79290:CDS |
| CAAACCAACAATGTCGCAAA+CGG | 0.547964 | 1.4:-56830019 | None:intergenic |
| TCAAGGCAAAACAATAGGCA+TGG | 0.548267 | 1.4:-56828157 | MS.gene79290:CDS |
| CCGAGCCGAAGAAGCAATGT+TGG | 0.549322 | 1.4:+56827694 | None:intergenic |
| AGTGTTTCTTCAATAGGTTG+AGG | 0.554093 | 1.4:+56827861 | None:intergenic |
| CTTCCAAAACCACGTGAACA+CGG | 0.555093 | 1.4:+56828310 | None:intergenic |
| CCAACATTGCTTCTTCGGCT+CGG | 0.556816 | 1.4:-56827694 | MS.gene79290:CDS |
| TATTTAGGAAAGTTCAAGCT+CGG | 0.557831 | 1.4:-56827970 | MS.gene79290:CDS |
| GCATGTAGTGGTTCAAAATG+AGG | 0.559809 | 1.4:-56827399 | MS.gene79290:CDS |
| TTTGCTCTTTAACATGCCCT+CGG | 0.561148 | 1.4:+56827900 | None:intergenic |
| AAAGTAACCAATATAATGGA+AGG | 0.561546 | 1.4:-56827769 | MS.gene79290:CDS |
| TTTCTTCAATAGGTTGAGGA+GGG | 0.570516 | 1.4:+56827865 | None:intergenic |
| GTTTCTTCAATAGGTTGAGG+AGG | 0.572179 | 1.4:+56827864 | None:intergenic |
| TTCCAAAACCACGTGAACAC+GGG | 0.574997 | 1.4:+56828311 | None:intergenic |
| CTCATCGTCGCCAACAACGT+TGG | 0.587414 | 1.4:-56829991 | MS.gene79290:intron |
| GCAGAAATAGGAACGATGAT+GGG | 0.587866 | 1.4:-56828123 | MS.gene79290:CDS |
| AAGAAACACTCTGTTGAGCA+AGG | 0.591435 | 1.4:-56827848 | MS.gene79290:CDS |
| AAGTGTTTCCCGTGTTCACG+TGG | 0.592780 | 1.4:-56828319 | MS.gene79290:CDS |
| GAACAAACCTATAATAATGA+GGG | 0.596913 | 1.4:-56827431 | MS.gene79290:CDS |
| AATGAAGAAGGGAGATCTCG+TGG | 0.596961 | 1.4:-56827306 | MS.gene79290:CDS |
| AGAAAGTTGAAGCACGCCGA+GGG | 0.601504 | 1.4:-56827916 | MS.gene79290:CDS |
| CAAGGCAAAACAATAGGCAT+GGG | 0.615186 | 1.4:-56828156 | MS.gene79290:CDS |
| GGGTTCTCCAAAATGAAGAA+GGG | 0.625338 | 1.4:-56827317 | MS.gene79290:CDS |
| TCAGCCAAGTTATTAGAGAG+AGG | 0.631266 | 1.4:+56827620 | None:intergenic |
| AATAGGCATGGGTCATCAAG+AGG | 0.632902 | 1.4:-56828145 | MS.gene79290:CDS |
| TGACATTGATCTTGATACAA+AGG | 0.632946 | 1.4:-56827501 | MS.gene79290:CDS |
| AGAGGCTGGTACCTAACTCG+TGG | 0.633024 | 1.4:+56827638 | None:intergenic |
| GGAGGAACTCAGATTTCTCA+AGG | 0.637151 | 1.4:-56828174 | MS.gene79290:CDS |
| AGGACTAAAGTATGGTTCAA+CGG | 0.640774 | 1.4:-56828221 | MS.gene79290:CDS |
| AGGGCACTTGCAAAGTCTCG+TGG | 0.643518 | 1.4:-56827347 | MS.gene79290:CDS |
| TTTCTTTGGAAAACTGACCG+AGG | 0.646782 | 1.4:+56827671 | None:intergenic |
| AAGAAAGTTGAAGCACGCCG+AGG | 0.654479 | 1.4:-56827917 | MS.gene79290:CDS |
| AGGAAAGAGAAGTAATGGAG+AGG | 0.667328 | 1.4:-56827828 | MS.gene79290:CDS |
| CAACAATCTCCTTCTCTCTG+GGG | 0.674813 | 1.4:+56827996 | None:intergenic |
| GGGTGTGGATGAGCATGTAG+TGG | 0.698167 | 1.4:-56827411 | MS.gene79290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATATGCTTTTTTTA+TGG | - | chr1.4:56828606-56828625 | MS.gene79290:intron | 10.0% |
| !! | AACAACAAAAAATATATTTG+AGG | + | chr1.4:56827919-56827938 | None:intergenic | 15.0% |
| !! | GATGATTATGATTAAAATTT+GGG | - | chr1.4:56827793-56827812 | MS.gene79290:CDS | 15.0% |
| !!! | ATTTTCTTTGTTTTTTCAAT+TGG | - | chr1.4:56827475-56827494 | MS.gene79290:CDS | 15.0% |
| !!! | ATTTTTCTTCATAATACAAT+GGG | - | chr1.4:56828105-56828124 | MS.gene79290:CDS | 15.0% |
| !! | AATATATTTGAGGACTAAAT+TGG | + | chr1.4:56827909-56827928 | None:intergenic | 20.0% |
| !! | ACATCAAATTATACAAAACA+CGG | + | chr1.4:56828868-56828887 | None:intergenic | 20.0% |
| !! | AGAGACTTATTTAACTAAAA+AGG | + | chr1.4:56828438-56828457 | None:intergenic | 20.0% |
| !! | ATCAAACCAATCAAATAAAA+GGG | + | chr1.4:56827407-56827426 | None:intergenic | 20.0% |
| !! | ATTAACATGCTAATTTAAAC+TGG | + | chr1.4:56828706-56828725 | None:intergenic | 20.0% |
| !! | GAGACTTATTTAACTAAAAA+GGG | + | chr1.4:56828437-56828456 | None:intergenic | 20.0% |
| !! | GATATGTTATCTTCAAAAAA+TGG | - | chr1.4:56829225-56829244 | MS.gene79290:intron | 20.0% |
| !! | GGATGATTATGATTAAAATT+TGG | - | chr1.4:56827792-56827811 | MS.gene79290:CDS | 20.0% |
| !! | GTTGGAAATATATGAAAAAA+TGG | + | chr1.4:56828307-56828326 | None:intergenic | 20.0% |
| !! | TATCAAACCAATCAAATAAA+AGG | + | chr1.4:56827408-56827427 | None:intergenic | 20.0% |
| !! | TCAAAAATTGTATTGCATAT+GGG | - | chr1.4:56828133-56828152 | MS.gene79290:CDS | 20.0% |
| !!! | ATGTTGTTTTAAATTTTCTC+AGG | - | chr1.4:56827726-56827745 | MS.gene79290:CDS | 20.0% |
| !!! | CATTTTTCTTCATAATACAA+TGG | - | chr1.4:56828104-56828123 | MS.gene79290:CDS | 20.0% |
| !!! | TGATATACAAATTTTACACT+AGG | - | chr1.4:56827423-56827442 | MS.gene79290:CDS | 20.0% |
| !!! | TTTATTGCCTATTATTTTCT+GGG | - | chr1.4:56827528-56827547 | MS.gene79290:CDS | 20.0% |
| !!! | TTTTTCTTCATAATACAATG+GGG | - | chr1.4:56828106-56828125 | MS.gene79290:CDS | 20.0% |
| ! | AAGAATAAAAAAATCCAGCT+TGG | + | chr1.4:56828672-56828691 | None:intergenic | 25.0% |
| ! | AATAAACCCAATTGAACATA+CGG | + | chr1.4:56827458-56827477 | None:intergenic | 25.0% |
| ! | AATAGTACATCACATATTCT+AGG | - | chr1.4:56828394-56828413 | MS.gene79290:intron | 25.0% |
| ! | AATCATCATCAGAAAATTCA+GGG | + | chr1.4:56829833-56829852 | None:intergenic | 25.0% |
| ! | AGGAGATTGTTGAATTATTT+AGG | - | chr1.4:56829310-56829329 | MS.gene79290:intron | 25.0% |
| ! | AGGTTTAGTTATGATAGATT+AGG | + | chr1.4:56828816-56828835 | None:intergenic | 25.0% |
| ! | ATTCATTCTCATGTCAAAAT+TGG | - | chr1.4:56829051-56829070 | MS.gene79290:intron | 25.0% |
| ! | CAAGAAAGTAACCAATATAA+TGG | - | chr1.4:56829522-56829541 | MS.gene79290:intron | 25.0% |
| ! | CTCAAAAATTGTATTGCATA+TGG | - | chr1.4:56828132-56828151 | MS.gene79290:CDS | 25.0% |
| ! | CTCTTATGTAAGTAAGTTTA+GGG | + | chr1.4:56827951-56827970 | None:intergenic | 25.0% |
| ! | CTTTATTGTTACATGTTTCT+GGG | - | chr1.4:56827880-56827899 | MS.gene79290:CDS | 25.0% |
| ! | GAACAAACCTATAATAATGA+GGG | - | chr1.4:56829864-56829883 | MS.gene79290:intron | 25.0% |
| ! | GGTTTAGTTATGATAGATTA+GGG | + | chr1.4:56828815-56828834 | None:intergenic | 25.0% |
| ! | GTAAATCATGTTATCTTAGT+GGG | - | chr1.4:56827550-56827569 | MS.gene79290:CDS | 25.0% |
| ! | TAAAAACCGTATGTTCAATT+GGG | - | chr1.4:56827449-56827468 | MS.gene79290:CDS | 25.0% |
| ! | TAAAATGCGTTACAAAAAGA+AGG | + | chr1.4:56828549-56828568 | None:intergenic | 25.0% |
| ! | TAAAATGTACTCCATCATAA+AGG | + | chr1.4:56828519-56828538 | None:intergenic | 25.0% |
| ! | TAAATCAATGGTGATAAAAG+AGG | - | chr1.4:56828480-56828499 | MS.gene79290:intron | 25.0% |
| ! | TCAAACCAATCAAATAAAAG+GGG | + | chr1.4:56827406-56827425 | None:intergenic | 25.0% |
| ! | TGATTTACCCAGAAAATAAT+AGG | + | chr1.4:56827538-56827557 | None:intergenic | 25.0% |
| ! | TTAAAAACCGTATGTTCAAT+TGG | - | chr1.4:56827448-56827467 | MS.gene79290:CDS | 25.0% |
| !! | AAAGTAACCAATATAATGGA+AGG | - | chr1.4:56829526-56829545 | MS.gene79290:intron | 25.0% |
| !! | AACTCTAAATTTTCTGATTC+AGG | - | chr1.4:56829552-56829571 | MS.gene79290:intron | 25.0% |
| !! | CTCATTATTATAGGTTTGTT+CGG | + | chr1.4:56829865-56829884 | None:intergenic | 25.0% |
| !! | CTTTATTGCCTATTATTTTC+TGG | - | chr1.4:56827527-56827546 | MS.gene79290:CDS | 25.0% |
| !! | TTTTCTTCATAATACAATGG+GGG | - | chr1.4:56828107-56828126 | MS.gene79290:CDS | 25.0% |
| !!! | AAGCTGGATTTTTTTATTCT+TGG | - | chr1.4:56828671-56828690 | MS.gene79290:intron | 25.0% |
| !!! | TAAAACCCCTTTTATTTGAT+TGG | - | chr1.4:56827398-56827417 | MS.gene79290:CDS | 25.0% |
| !!! | TTTGAGTATCTACTTTTTAC+TGG | + | chr1.4:56828572-56828591 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTTCAATTGGTTG+CGG | - | chr1.4:56827481-56827500 | MS.gene79290:CDS | 25.0% |
| AAAAACCTAAACCAGAGAAA+AGG | + | chr1.4:56827684-56827703 | None:intergenic | 30.0% | |
| AAAACCTAAACCAGAGAAAA+GGG | + | chr1.4:56827683-56827702 | None:intergenic | 30.0% | |
| AAAATTGGAGGACTAAAGTA+TGG | - | chr1.4:56829066-56829085 | MS.gene79290:intron | 30.0% | |
| ACTGAAGATGTCTGAATTAA+GGG | - | chr1.4:56829929-56829948 | MS.gene79290:intron | 30.0% | |
| ATTTCTCAAGGCAAAACAAT+AGG | - | chr1.4:56829133-56829152 | MS.gene79290:intron | 30.0% | |
| CATAGACTATACTATAGTGT+TGG | + | chr1.4:56827823-56827842 | None:intergenic | 30.0% | |
| CATCTTAAAATTCTACACCA+AGG | + | chr1.4:56827630-56827649 | None:intergenic | 30.0% | |
| CCAGAAACATGTAACAATAA+AGG | + | chr1.4:56827882-56827901 | None:intergenic | 30.0% | |
| CCTAAACTTACTTACATAAG+AGG | - | chr1.4:56827949-56827968 | MS.gene79290:CDS | 30.0% | |
| CCTCTTATGTAAGTAAGTTT+AGG | + | chr1.4:56827952-56827971 | None:intergenic | 30.0% | |
| CCTTTATTGTTACATGTTTC+TGG | - | chr1.4:56827879-56827898 | MS.gene79290:CDS | 30.0% | |
| CGAACAAACCTATAATAATG+AGG | - | chr1.4:56829863-56829882 | MS.gene79290:intron | 30.0% | |
| GAATCATCATCAGAAAATTC+AGG | + | chr1.4:56829834-56829853 | None:intergenic | 30.0% | |
| GATACTAATGCAATACCAAT+AGG | - | chr1.4:56829696-56829715 | MS.gene79290:intron | 30.0% | |
| GGTAAATCATGTTATCTTAG+TGG | - | chr1.4:56827549-56827568 | MS.gene79290:CDS | 30.0% | |
| GTCATTGAAACGTCAAATAT+TGG | + | chr1.4:56827598-56827617 | None:intergenic | 30.0% | |
| TAAAAAAATCCAGCTTGGTA+AGG | + | chr1.4:56828667-56828686 | None:intergenic | 30.0% | |
| TAGATGACATTCAGAAAAGA+AGG | - | chr1.4:56828070-56828089 | MS.gene79290:CDS | 30.0% | |
| TATTTAGGAAAGTTCAAGCT+CGG | - | chr1.4:56829325-56829344 | MS.gene79290:intron | 30.0% | |
| TCATTATCTTCAGTACCTAT+TGG | + | chr1.4:56829714-56829733 | None:intergenic | 30.0% | |
| TCTATCATAACTAAACCTAG+AGG | - | chr1.4:56828818-56828837 | MS.gene79290:intron | 30.0% | |
| TGAAGATAATGAGAACATTC+AGG | - | chr1.4:56829722-56829741 | MS.gene79290:intron | 30.0% | |
| TGACATTGATCTTGATACAA+AGG | - | chr1.4:56829794-56829813 | MS.gene79290:intron | 30.0% | |
| TGTAAGGACGAAAAAAGTAA+AGG | + | chr1.4:56828894-56828913 | None:intergenic | 30.0% | |
| TGTTAAAAGTCAGAACATTG+TGG | - | chr1.4:56827771-56827790 | MS.gene79290:CDS | 30.0% | |
| ! | AGTTTTGCCTTCCATTATAT+TGG | + | chr1.4:56829536-56829555 | None:intergenic | 30.0% |
| ! | ATTGTATTGCATATGGGTTT+TGG | - | chr1.4:56828139-56828158 | MS.gene79290:CDS | 30.0% |
| ! | TTGGTAATTACAGGACATTT+AGG | - | chr1.4:56827984-56828003 | MS.gene79290:CDS | 30.0% |
| ! | TTGTATTGCATATGGGTTTT+GGG | - | chr1.4:56828140-56828159 | MS.gene79290:CDS | 30.0% |
| ! | TTTCTTTTCTTCTTTGACAG+TGG | + | chr1.4:56829364-56829383 | None:intergenic | 30.0% |
| !! | GACTGTTCTCATATTAGTTT+TGG | - | chr1.4:56827357-56827376 | MS.gene79290:CDS | 30.0% |
| !!! | AAAGGGGTTTTAGAAATTGA+AGG | + | chr1.4:56827390-56827409 | None:intergenic | 30.0% |
| !!! | AAGGGGTTTTAGAAATTGAA+GGG | + | chr1.4:56827389-56827408 | None:intergenic | 30.0% |
| !!! | ATGTTTTTTATGACCCTTAG+AGG | - | chr1.4:56828638-56828657 | MS.gene79290:intron | 30.0% |
| !!! | GGTGTAGAATTTTAAGATGT+AGG | - | chr1.4:56827631-56827650 | MS.gene79290:CDS | 30.0% |
| !!! | TGTTTTTTATGACCCTTAGA+GGG | - | chr1.4:56828639-56828658 | MS.gene79290:intron | 30.0% |
| AACCTATAATAATGAGGGTG+TGG | - | chr1.4:56829869-56829888 | MS.gene79290:intron | 35.0% | |
| ACATTCAGAAAAGAAGGCTT+TGG | - | chr1.4:56828076-56828095 | MS.gene79290:CDS | 35.0% | |
| ACCACAAAGATAATCGTGTA+AGG | + | chr1.4:56828910-56828929 | None:intergenic | 35.0% | |
| AGAACAGTCTTGAATCAAAG+AGG | + | chr1.4:56827346-56827365 | None:intergenic | 35.0% | |
| AGGACTAAAGTATGGTTCAA+CGG | - | chr1.4:56829074-56829093 | MS.gene79290:intron | 35.0% | |
| AGGGGTTTGAAAAAAAAGGA+AGG | - | chr1.4:56828032-56828051 | MS.gene79290:CDS | 35.0% | |
| AGTGTTTCTTCAATAGGTTG+AGG | + | chr1.4:56829437-56829456 | None:intergenic | 35.0% | |
| ATCCACACCCTCATTATTAT+AGG | + | chr1.4:56829874-56829893 | None:intergenic | 35.0% | |
| ATCTTTGTGGTTGTTGAGTT+GGG | - | chr1.4:56828919-56828938 | MS.gene79290:intron | 35.0% | |
| ATTCAGAAAAGAAGGCTTTG+GGG | - | chr1.4:56828078-56828097 | MS.gene79290:CDS | 35.0% | |
| CACTGAAGATGTCTGAATTA+AGG | - | chr1.4:56829928-56829947 | MS.gene79290:intron | 35.0% | |
| CATTCAGAAAAGAAGGCTTT+GGG | - | chr1.4:56828077-56828096 | MS.gene79290:CDS | 35.0% | |
| CATTCTCATGTCAAAATTGG+AGG | - | chr1.4:56829054-56829073 | MS.gene79290:intron | 35.0% | |
| CCATTAGTATCGCATAATTC+AGG | - | chr1.4:56829249-56829268 | MS.gene79290:intron | 35.0% | |
| CCTGAATTATGCGATACTAA+TGG | + | chr1.4:56829252-56829271 | None:intergenic | 35.0% | |
| GCATAATTCAGGAAAATTCC+AGG | - | chr1.4:56829260-56829279 | MS.gene79290:intron | 35.0% | |
| GTATATTCATGCACTTCTCT+AGG | - | chr1.4:56829018-56829037 | MS.gene79290:intron | 35.0% | |
| TATCTTTGTGGTTGTTGAGT+TGG | - | chr1.4:56828918-56828937 | MS.gene79290:intron | 35.0% | |
| TCAATGACCAATTGTAACCT+TGG | - | chr1.4:56827610-56827629 | MS.gene79290:CDS | 35.0% | |
| TCAATGTCAGACACAAGTTT+AGG | + | chr1.4:56829783-56829802 | None:intergenic | 35.0% | |
| TCCTTACACGATTATCTTTG+TGG | - | chr1.4:56828906-56828925 | MS.gene79290:intron | 35.0% | |
| TGGTGATAAAAGAGGATAAC+TGG | - | chr1.4:56828488-56828507 | MS.gene79290:intron | 35.0% | |
| TTCTACACCAAGGTTACAAT+TGG | + | chr1.4:56827620-56827639 | None:intergenic | 35.0% | |
| ! | AAAAGGGTAAACCACCATTT+TGG | + | chr1.4:56828421-56828440 | None:intergenic | 35.0% |
| ! | ATTGGTTACTTTCTTGCAAC+TGG | + | chr1.4:56829518-56829537 | None:intergenic | 35.0% |
| ! | CAACAGAGTGTTTCTTCAAT+AGG | + | chr1.4:56829443-56829462 | None:intergenic | 35.0% |
| ! | CATCTTTTGTATGTGAAGCA+AGG | - | chr1.4:56829100-56829119 | MS.gene79290:intron | 35.0% |
| ! | TAAGCTGAGTTTTCAACAGT+TGG | - | chr1.4:56828787-56828806 | MS.gene79290:intron | 35.0% |
| ! | TGTAGATTTTCCACAAGTCA+TGG | - | chr1.4:56828738-56828757 | MS.gene79290:intron | 35.0% |
| ! | TGTATTGCATATGGGTTTTG+GGG | - | chr1.4:56828141-56828160 | MS.gene79290:CDS | 35.0% |
| ! | TTACTATCGTCTCTAAGAGT+TGG | + | chr1.4:56828376-56828395 | None:intergenic | 35.0% |
| ! | TTTCTTCAATAGGTTGAGGA+GGG | + | chr1.4:56829433-56829452 | None:intergenic | 35.0% |
| !! | ACATTTAGGCTTTGTTTGGA+GGG | - | chr1.4:56827998-56828017 | MS.gene79290:CDS | 35.0% |
| !! | ATATTCTAGGACCAAAATGG+TGG | - | chr1.4:56828407-56828426 | MS.gene79290:intron | 35.0% |
| !! | CACATATTCTAGGACCAAAA+TGG | - | chr1.4:56828404-56828423 | MS.gene79290:intron | 35.0% |
| !! | CAGAGATTGTTGGTAATTAC+AGG | - | chr1.4:56827975-56827994 | MS.gene79290:CDS | 35.0% |
| !! | GAGTTGGGTTGATATATTTC+AGG | - | chr1.4:56828934-56828953 | MS.gene79290:intron | 35.0% |
| !! | GGTTGATATATTTCAGGTTG+TGG | - | chr1.4:56828940-56828959 | MS.gene79290:intron | 35.0% |
| !! | GTTGATAGTTTGCTACCATA+GGG | - | chr1.4:56828840-56828859 | MS.gene79290:intron | 35.0% |
| !!! | AGGGGTTTTAGAAATTGAAG+GGG | + | chr1.4:56827388-56827407 | None:intergenic | 35.0% |
| AACAATAAAGGAGACGCTTG+TGG | + | chr1.4:56827870-56827889 | None:intergenic | 40.0% | |
| AACTGGTGTGTCCTTTATGA+TGG | - | chr1.4:56828505-56828524 | MS.gene79290:intron | 40.0% | |
| AAGAAACACTCTGTTGAGCA+AGG | - | chr1.4:56829447-56829466 | MS.gene79290:intron | 40.0% | |
| ACTACAATGACCATGACTTG+TGG | + | chr1.4:56828751-56828770 | None:intergenic | 40.0% | |
| AGAAGCCAACATTGCTTCTT+CGG | - | chr1.4:56829596-56829615 | MS.gene79290:intron | 40.0% | |
| AGGGTTCTCCAAAATGAAGA+AGG | - | chr1.4:56829977-56829996 | MS.gene79290:intron | 40.0% | |
| CAAGGCAAAACAATAGGCAT+GGG | - | chr1.4:56829139-56829158 | MS.gene79290:intron | 40.0% | |
| GAGATACTAACCAACGTTGT+TGG | + | chr1.4:56827317-56827336 | None:intergenic | 40.0% | |
| GAGCAAGGAAAGAGAAGTAA+TGG | - | chr1.4:56829462-56829481 | MS.gene79290:intron | 40.0% | |
| GCAGAAATAGGAACGATGAT+GGG | - | chr1.4:56829172-56829191 | MS.gene79290:intron | 40.0% | |
| GCATGTAGTGGTTCAAAATG+AGG | - | chr1.4:56829896-56829915 | MS.gene79290:intron | 40.0% | |
| GGGTTCTCCAAAATGAAGAA+GGG | - | chr1.4:56829978-56829997 | MS.gene79290:intron | 40.0% | |
| GTAGCAAACTATCAACCTCT+AGG | + | chr1.4:56828836-56828855 | None:intergenic | 40.0% | |
| TCAACAATCTCCTTCTCTCT+GGG | + | chr1.4:56829303-56829322 | None:intergenic | 40.0% | |
| TCAAGGCAAAACAATAGGCA+TGG | - | chr1.4:56829138-56829157 | MS.gene79290:intron | 40.0% | |
| TCAGCCAAGTTATTAGAGAG+AGG | + | chr1.4:56829678-56829697 | None:intergenic | 40.0% | |
| TTCAACAATCTCCTTCTCTC+TGG | + | chr1.4:56829304-56829323 | None:intergenic | 40.0% | |
| TTTGCTCTTTAACATGCCCT+CGG | + | chr1.4:56829398-56829417 | None:intergenic | 40.0% | |
| ! | AGGAAAGAGAAGTAATGGAG+AGG | - | chr1.4:56829467-56829486 | MS.gene79290:intron | 40.0% |
| ! | ATCGTCTCTAAGAGTTGGTT+TGG | + | chr1.4:56828371-56828390 | None:intergenic | 40.0% |
| ! | ATTGGTTGCGGTTTTCTCAT+AGG | - | chr1.4:56827493-56827512 | MS.gene79290:CDS | 40.0% |
| ! | CTTTTGTATGTGAAGCAAGG+AGG | - | chr1.4:56829103-56829122 | MS.gene79290:intron | 40.0% |
| ! | GAGATCTCCCTTCTTCATTT+TGG | + | chr1.4:56829988-56830007 | None:intergenic | 40.0% |
| ! | GTTTCTTCAATAGGTTGAGG+AGG | + | chr1.4:56829434-56829453 | None:intergenic | 40.0% |
| ! | TCAGACACAAGTTTAGGTTC+TGG | + | chr1.4:56829777-56829796 | None:intergenic | 40.0% |
| ! | TCGTCTCTAAGAGTTGGTTT+GGG | + | chr1.4:56828370-56828389 | None:intergenic | 40.0% |
| ! | TTCAGAAAAGAAGGCTTTGG+GGG | - | chr1.4:56828079-56828098 | MS.gene79290:CDS | 40.0% |
| ! | TTGCGGTTTTCTCATAGGAA+AGG | - | chr1.4:56827498-56827517 | MS.gene79290:CDS | 40.0% |
| ! | TTTCTTTGGAAAACTGACCG+AGG | + | chr1.4:56829627-56829646 | None:intergenic | 40.0% |
| !! | CAGGACATTTAGGCTTTGTT+TGG | - | chr1.4:56827994-56828013 | MS.gene79290:CDS | 40.0% |
| !! | GACATTTAGGCTTTGTTTGG+AGG | - | chr1.4:56827997-56828016 | MS.gene79290:CDS | 40.0% |
| !! | GGTTGATAGTTTGCTACCAT+AGG | - | chr1.4:56828839-56828858 | MS.gene79290:intron | 40.0% |
| !! | TAAGAGGCATCAGAGATTGT+TGG | - | chr1.4:56827965-56827984 | MS.gene79290:CDS | 40.0% |
| !! | TAAGAGTTGGTTTGGGAGTT+TGG | + | chr1.4:56828363-56828382 | None:intergenic | 40.0% |
| !!! | ATATGGGTTTTGGGGAGTTT+TGG | - | chr1.4:56828149-56828168 | MS.gene79290:CDS | 40.0% |
| !!! | ATTAGAAGTGCCCTTTTCTC+TGG | - | chr1.4:56827670-56827689 | MS.gene79290:CDS | 40.0% |
| AATAGGCATGGGTCATCAAG+AGG | - | chr1.4:56829150-56829169 | MS.gene79290:intron | 45.0% | |
| AATGAAGAAGGGAGATCTCG+TGG | - | chr1.4:56829989-56830008 | MS.gene79290:intron | 45.0% | |
| ATACAAAACACGGTGCCCTA+TGG | + | chr1.4:56828858-56828877 | None:intergenic | 45.0% | |
| CAACAATCTCCTTCTCTCTG+GGG | + | chr1.4:56829302-56829321 | None:intergenic | 45.0% | |
| CCAAGTTATTAGAGAGAGGC+TGG | + | chr1.4:56829674-56829693 | None:intergenic | 45.0% | |
| CCAGCCTCTCTCTAATAACT+TGG | - | chr1.4:56829671-56829690 | MS.gene79290:intron | 45.0% | |
| CTTCCAAAACCACGTGAACA+CGG | + | chr1.4:56828988-56829007 | None:intergenic | 45.0% | |
| CTTGCAACTGGTCAGAGTTA+AGG | + | chr1.4:56829506-56829525 | None:intergenic | 45.0% | |
| CTTGGTAAGGTTCCCTCTAA+GGG | + | chr1.4:56828654-56828673 | None:intergenic | 45.0% | |
| GGAGGAACTCAGATTTCTCA+AGG | - | chr1.4:56829121-56829140 | MS.gene79290:intron | 45.0% | |
| GGCAGAAATAGGAACGATGA+TGG | - | chr1.4:56829171-56829190 | MS.gene79290:intron | 45.0% | |
| GGGGAGGGGTTTGAAAAAAA+AGG | - | chr1.4:56828028-56828047 | MS.gene79290:CDS | 45.0% | |
| GGTCATCAAGAGGCAGAAAT+AGG | - | chr1.4:56829160-56829179 | MS.gene79290:intron | 45.0% | |
| GTGGAACAGGAGACTTTCTT+TGG | + | chr1.4:56829641-56829660 | None:intergenic | 45.0% | |
| TCTGATTCAGGTGCTCCAAA+GGG | - | chr1.4:56829564-56829583 | MS.gene79290:intron | 45.0% | |
| TTCCAAAACCACGTGAACAC+GGG | + | chr1.4:56828987-56829006 | None:intergenic | 45.0% | |
| TTCTGATTCAGGTGCTCCAA+AGG | - | chr1.4:56829563-56829582 | MS.gene79290:intron | 45.0% | |
| TTTGTTTGGAGGGTAAGGGA+GGG | - | chr1.4:56828008-56828027 | MS.gene79290:CDS | 45.0% | |
| ! | AGAAGTAATGGAGAGGACGA+TGG | - | chr1.4:56829474-56829493 | MS.gene79290:intron | 45.0% |
| ! | TAGGTTGAGGAGGGAATCTA+CGG | + | chr1.4:56829424-56829443 | None:intergenic | 45.0% |
| !! | AGGCTTTGTTTGGAGGGTAA+GGG | - | chr1.4:56828004-56828023 | MS.gene79290:CDS | 45.0% |
| !! | AGTGCCCTTTTCTCTGGTTT+AGG | - | chr1.4:56827676-56827695 | MS.gene79290:CDS | 45.0% |
| !! | AGTTGGTTTGGGAGTTTGGA+AGG | + | chr1.4:56828359-56828378 | None:intergenic | 45.0% |
| !! | GTTGGTTTGGGAGTTTGGAA+GGG | + | chr1.4:56828358-56828377 | None:intergenic | 45.0% |
| !! | TAGGCTTTGTTTGGAGGGTA+AGG | - | chr1.4:56828003-56828022 | MS.gene79290:CDS | 45.0% |
| !!! | TATTATTTAAAATAAATGAA+TGG | + | chr1.4:56828462-56828481 | None:intergenic | 5.0% |
| !!! | TATTTTAAATAATAAATCAA+TGG | - | chr1.4:56828468-56828487 | MS.gene79290:intron | 5.0% |
| AAGAAAGTTGAAGCACGCCG+AGG | - | chr1.4:56829378-56829397 | MS.gene79290:intron | 50.0% | |
| AAGTGTTTCCCGTGTTCACG+TGG | - | chr1.4:56828976-56828995 | MS.gene79290:intron | 50.0% | |
| AGAAAGTTGAAGCACGCCGA+GGG | - | chr1.4:56829379-56829398 | MS.gene79290:intron | 50.0% | |
| AGTCTCCTGTTCCACGAGTT+AGG | - | chr1.4:56829646-56829665 | MS.gene79290:intron | 50.0% | |
| CAAAGTCTCGTGGCGTGAAA+GGG | - | chr1.4:56829958-56829977 | MS.gene79290:intron | 50.0% | |
| CACGGGAAACACTTGTCTTC+TGG | + | chr1.4:56828970-56828989 | None:intergenic | 50.0% | |
| CCAACATTGCTTCTTCGGCT+CGG | - | chr1.4:56829601-56829620 | MS.gene79290:intron | 50.0% | |
| GCTTGGTAAGGTTCCCTCTA+AGG | + | chr1.4:56828655-56828674 | None:intergenic | 50.0% | |
| GTTTGGGAGTTTGGAAGGGA+GGG | + | chr1.4:56828354-56828373 | None:intergenic | 50.0% | |
| TAGAGGGAACCTTACCAAGC+TGG | - | chr1.4:56828655-56828674 | MS.gene79290:intron | 50.0% | |
| TGGTACCTAACTCGTGGAAC+AGG | + | chr1.4:56829654-56829673 | None:intergenic | 50.0% | |
| TTGTTTGGAGGGTAAGGGAG+GGG | - | chr1.4:56828009-56828028 | MS.gene79290:CDS | 50.0% | |
| TTTGGGAGTTTGGAAGGGAG+GGG | + | chr1.4:56828353-56828372 | None:intergenic | 50.0% | |
| ! | CTTTGTTTGGAGGGTAAGGG+AGG | - | chr1.4:56828007-56828026 | MS.gene79290:CDS | 50.0% |
| ! | TTCCCGTGTTCACGTGGTTT+TGG | - | chr1.4:56828982-56829001 | MS.gene79290:intron | 50.0% |
| !! | AAGGGAAGGCTTTGGAAGGT+TGG | + | chr1.4:56828325-56828344 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGGAGTTTTGGA+GGG | - | chr1.4:56828153-56828172 | MS.gene79290:CDS | 50.0% |
| !!! | TGGGTTTTGGGGAGTTTTGG+AGG | - | chr1.4:56828152-56828171 | MS.gene79290:CDS | 50.0% |
| AGAGGCTGGTACCTAACTCG+TGG | + | chr1.4:56829660-56829679 | None:intergenic | 55.0% | |
| CCGAGCCGAAGAAGCAATGT+TGG | + | chr1.4:56829604-56829623 | None:intergenic | 55.0% | |
| CTCATCGTCGCCAACAACGT+TGG | - | chr1.4:56827304-56827323 | MS.gene79290:CDS | 55.0% | |
| GCAAAGTCTCGTGGCGTGAA+AGG | - | chr1.4:56829957-56829976 | MS.gene79290:intron | 55.0% | |
| GGGTGTGGATGAGCATGTAG+TGG | - | chr1.4:56829884-56829903 | MS.gene79290:intron | 55.0% | |
| GGTTTGGGAGTTTGGAAGGG+AGG | + | chr1.4:56828355-56828374 | None:intergenic | 55.0% | |
| TTCAAGCTCGGTTGCGTGAG+AGG | - | chr1.4:56829337-56829356 | MS.gene79290:intron | 55.0% | |
| ! | AGGGCACTTGCAAAGTCTCG+TGG | - | chr1.4:56829948-56829967 | MS.gene79290:intron | 55.0% |
| GAGTTTGGAAGGGAGGGGAG+GGG | + | chr1.4:56828348-56828367 | None:intergenic | 60.0% | |
| GCTTCTCGAGACTCGCCCTT+TGG | + | chr1.4:56829582-56829601 | None:intergenic | 60.0% | |
| GGAGTTTGGAAGGGAGGGGA+GGG | + | chr1.4:56828349-56828368 | None:intergenic | 60.0% | |
| TTCCAGGCCACTTCATCCCC+TGG | - | chr1.4:56829276-56829295 | MS.gene79290:intron | 60.0% | |
| TTGGAGGGTAAGGGAGGGGA+GGG | - | chr1.4:56828013-56828032 | MS.gene79290:CDS | 60.0% | |
| TTTGGAGGGTAAGGGAGGGG+AGG | - | chr1.4:56828012-56828031 | MS.gene79290:CDS | 60.0% | |
| !! | ATCTCCTTCTCTCTGGGGCC+AGG | + | chr1.4:56829297-56829316 | None:intergenic | 60.0% |
| !! | GGGGAAGGGAAGGCTTTGGA+AGG | + | chr1.4:56828329-56828348 | None:intergenic | 60.0% |
| !! | TCTCCTTCTCTCTGGGGCCA+GGG | + | chr1.4:56829296-56829315 | None:intergenic | 60.0% |
| !! | TTGCTTCTTCGGCTCGGCCT+CGG | - | chr1.4:56829607-56829626 | MS.gene79290:intron | 60.0% |
| ATCCCCTGGCCCCAGAGAGA+AGG | - | chr1.4:56829290-56829309 | MS.gene79290:intron | 65.0% | |
| GGGAGGGGAAGGGAAGGCTT+TGG | + | chr1.4:56828333-56828352 | None:intergenic | 65.0% | |
| GGGAGTTTGGAAGGGAGGGG+AGG | + | chr1.4:56828350-56828369 | None:intergenic | 65.0% | |
| TGGAAGGGAGGGGAGGGGAA+GGG | + | chr1.4:56828343-56828362 | None:intergenic | 65.0% | |
| TGGAGGGTAAGGGAGGGGAG+GGG | - | chr1.4:56828014-56828033 | MS.gene79290:CDS | 65.0% | |
| TTGGAAGGGAGGGGAGGGGA+AGG | + | chr1.4:56828344-56828363 | None:intergenic | 65.0% | |
| ! | TCTGGGGCCAGGGGATGAAG+TGG | + | chr1.4:56829286-56829305 | None:intergenic | 65.0% |
| !! | CTCCTTCTCTCTGGGGCCAG+GGG | + | chr1.4:56829295-56829314 | None:intergenic | 65.0% |
| AGGGAGGGGAGGGGAAGGGA+AGG | + | chr1.4:56828339-56828358 | None:intergenic | 70.0% | |
| GGCCAGGGGATGAAGTGGCC+TGG | + | chr1.4:56829281-56829300 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 56827286 | 56830031 | 56827286 | ID=MS.gene79290 |
| chr1.4 | mRNA | 56827286 | 56830031 | 56827286 | ID=MS.gene79290.t1;Parent=MS.gene79290 |
| chr1.4 | exon | 56829992 | 56830031 | 56829992 | ID=MS.gene79290.t1.exon1;Parent=MS.gene79290.t1 |
| chr1.4 | CDS | 56829992 | 56830031 | 56829992 | ID=cds.MS.gene79290.t1;Parent=MS.gene79290.t1 |
| chr1.4 | exon | 56827286 | 56828361 | 56827286 | ID=MS.gene79290.t1.exon2;Parent=MS.gene79290.t1 |
| chr1.4 | CDS | 56827286 | 56828361 | 56827286 | ID=cds.MS.gene79290.t1;Parent=MS.gene79290.t1 |
| Gene Sequence |
| Protein sequence |
