Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057635.t1 | XP_003606968.1 | 88.3 | 549 | 15 | 4 | 5 | 504 | 17 | 565 | 1.30E-267 | 931.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057635.t1 | Q93ZE9 | 58.7 | 530 | 172 | 11 | 6 | 494 | 15 | 538 | 8.5e-162 | 571.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057635.t1 | G7JHF5 | 88.3 | 549 | 15 | 4 | 5 | 504 | 17 | 565 | 9.7e-268 | 931.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene057635 | MS.gene057637 | PPI |
MS.gene057635 | MS.gene063146 | PPI |
MS.gene057635 | MS.gene68794 | PPI |
MS.gene057635 | MS.gene003702 | PPI |
MS.gene057635 | MS.gene014260 | PPI |
MS.gene68201 | MS.gene057635 | PPI |
MS.gene057635 | MS.gene68201 | PPI |
MS.gene057635 | MS.gene50751 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057635.t1 | MTR_4g070720 | 88.342 | 549 | 15 | 4 | 5 | 504 | 17 | 565 | 0.0 | 984 |
MS.gene057635.t1 | MTR_3g117090 | 68.402 | 557 | 120 | 11 | 3 | 504 | 14 | 569 | 0.0 | 689 |
MS.gene057635.t1 | MTR_3g117090 | 68.182 | 528 | 115 | 10 | 3 | 478 | 14 | 540 | 0.0 | 665 |
MS.gene057635.t1 | MTR_6g015645 | 65.760 | 441 | 93 | 9 | 121 | 504 | 9 | 448 | 0.0 | 543 |
MS.gene057635.t1 | MTR_8g076880 | 54.015 | 548 | 189 | 11 | 14 | 504 | 13 | 554 | 0.0 | 520 |
MS.gene057635.t1 | MTR_5g021050 | 51.277 | 509 | 172 | 10 | 20 | 500 | 10 | 470 | 3.66e-174 | 499 |
MS.gene057635.t1 | MTR_5g021050 | 51.277 | 509 | 172 | 10 | 20 | 500 | 10 | 470 | 6.17e-174 | 498 |
MS.gene057635.t1 | MTR_1g022480 | 49.141 | 582 | 197 | 15 | 12 | 499 | 35 | 611 | 1.39e-171 | 498 |
MS.gene057635.t1 | MTR_1g022480 | 48.973 | 584 | 197 | 15 | 12 | 499 | 35 | 613 | 2.32e-171 | 497 |
MS.gene057635.t1 | MTR_1g022480 | 48.557 | 589 | 197 | 16 | 12 | 499 | 35 | 618 | 8.00e-169 | 491 |
MS.gene057635.t1 | MTR_3g117100 | 72.327 | 318 | 64 | 5 | 7 | 300 | 28 | 345 | 3.39e-164 | 479 |
MS.gene057635.t1 | MTR_3g117100 | 51.852 | 81 | 35 | 2 | 428 | 504 | 543 | 623 | 5.88e-13 | 71.6 |
MS.gene057635.t1 | MTR_4g070810 | 74.237 | 295 | 52 | 5 | 30 | 300 | 48 | 342 | 2.30e-155 | 456 |
MS.gene057635.t1 | MTR_4g070810 | 50.617 | 81 | 36 | 2 | 428 | 504 | 536 | 616 | 3.39e-12 | 69.3 |
MS.gene057635.t1 | MTR_1g022480 | 47.809 | 502 | 168 | 13 | 87 | 499 | 31 | 527 | 2.65e-141 | 417 |
MS.gene057635.t1 | MTR_3g112150 | 65.190 | 316 | 86 | 3 | 9 | 300 | 13 | 328 | 5.50e-141 | 418 |
MS.gene057635.t1 | MTR_7g056587 | 55.280 | 322 | 116 | 5 | 5 | 300 | 16 | 335 | 4.67e-121 | 367 |
MS.gene057635.t1 | MTR_7g056587 | 55.280 | 322 | 116 | 5 | 5 | 300 | 24 | 343 | 6.77e-121 | 367 |
MS.gene057635.t1 | MTR_7g056587 | 55.280 | 322 | 116 | 5 | 5 | 300 | 24 | 343 | 9.16e-121 | 367 |
MS.gene057635.t1 | MTR_7g056587 | 55.280 | 322 | 116 | 5 | 5 | 300 | 38 | 357 | 1.87e-120 | 367 |
MS.gene057635.t1 | MTR_4g070790 | 55.000 | 300 | 97 | 5 | 56 | 321 | 49 | 344 | 1.09e-113 | 342 |
MS.gene057635.t1 | MTR_3g010190 | 52.695 | 334 | 129 | 8 | 6 | 313 | 18 | 348 | 6.13e-109 | 334 |
MS.gene057635.t1 | MTR_7g056587 | 61.468 | 218 | 65 | 2 | 102 | 300 | 1 | 218 | 5.60e-98 | 304 |
MS.gene057635.t1 | MTR_5g012460 | 46.372 | 317 | 144 | 3 | 23 | 320 | 54 | 363 | 1.72e-97 | 302 |
MS.gene057635.t1 | MTR_8g071000 | 51.852 | 297 | 118 | 5 | 26 | 300 | 33 | 326 | 3.65e-94 | 298 |
MS.gene057635.t1 | MTR_4g070730 | 51.406 | 249 | 85 | 5 | 61 | 300 | 41 | 262 | 4.28e-79 | 252 |
MS.gene057635.t1 | MTR_4g070780 | 50.775 | 258 | 82 | 5 | 62 | 300 | 36 | 267 | 6.91e-79 | 252 |
MS.gene057635.t1 | MTR_6g034285 | 48.039 | 102 | 42 | 1 | 120 | 210 | 195 | 296 | 4.44e-24 | 104 |
MS.gene057635.t1 | MTR_7g070480 | 24.923 | 325 | 206 | 10 | 15 | 318 | 30 | 337 | 7.94e-16 | 80.1 |
MS.gene057635.t1 | MTR_3g098530 | 28.448 | 232 | 149 | 6 | 58 | 280 | 44 | 267 | 8.55e-16 | 78.2 |
MS.gene057635.t1 | MTR_8g096170 | 30.288 | 208 | 129 | 6 | 77 | 275 | 45 | 245 | 1.58e-14 | 73.9 |
MS.gene057635.t1 | MTR_8g096180 | 30.000 | 220 | 124 | 8 | 77 | 275 | 42 | 252 | 2.51e-14 | 73.6 |
MS.gene057635.t1 | MTR_8g096180 | 30.233 | 215 | 120 | 8 | 77 | 275 | 42 | 242 | 2.67e-14 | 73.2 |
MS.gene057635.t1 | MTR_3g060670 | 27.919 | 197 | 108 | 5 | 84 | 260 | 33 | 215 | 3.31e-14 | 74.3 |
MS.gene057635.t1 | MTR_2g027140 | 26.728 | 217 | 114 | 7 | 71 | 260 | 23 | 221 | 6.47e-14 | 73.2 |
MS.gene057635.t1 | MTR_4g013300 | 27.650 | 217 | 136 | 6 | 84 | 287 | 125 | 333 | 1.11e-13 | 73.6 |
MS.gene057635.t1 | MTR_8g095360 | 24.096 | 249 | 152 | 7 | 84 | 312 | 181 | 412 | 2.04e-12 | 69.7 |
MS.gene057635.t1 | MTR_7g087500 | 30.286 | 175 | 109 | 5 | 85 | 257 | 47 | 210 | 5.43e-12 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057635.t1 | AT2G21540 | 59.108 | 538 | 173 | 11 | 6 | 502 | 15 | 546 | 0.0 | 597 |
MS.gene057635.t1 | AT2G21540 | 59.108 | 538 | 173 | 11 | 6 | 502 | 15 | 546 | 0.0 | 597 |
MS.gene057635.t1 | AT2G21540 | 58.835 | 532 | 178 | 9 | 6 | 502 | 15 | 540 | 0.0 | 597 |
MS.gene057635.t1 | AT2G21540 | 59.108 | 538 | 173 | 11 | 6 | 502 | 15 | 546 | 0.0 | 597 |
MS.gene057635.t1 | AT2G21540 | 58.835 | 532 | 178 | 9 | 6 | 502 | 15 | 540 | 0.0 | 597 |
MS.gene057635.t1 | AT2G21540 | 59.108 | 538 | 173 | 11 | 6 | 502 | 15 | 546 | 0.0 | 597 |
MS.gene057635.t1 | AT4G36490 | 58.071 | 539 | 174 | 12 | 14 | 504 | 8 | 542 | 0.0 | 590 |
MS.gene057635.t1 | AT2G18180 | 55.797 | 552 | 163 | 12 | 15 | 504 | 13 | 545 | 0.0 | 575 |
MS.gene057635.t1 | AT4G39180 | 55.701 | 535 | 182 | 13 | 6 | 493 | 15 | 541 | 0.0 | 575 |
MS.gene057635.t1 | AT4G39180 | 55.597 | 536 | 182 | 13 | 6 | 493 | 15 | 542 | 0.0 | 575 |
MS.gene057635.t1 | AT4G39180 | 55.701 | 535 | 182 | 13 | 6 | 493 | 15 | 541 | 0.0 | 575 |
MS.gene057635.t1 | AT2G18180 | 56.007 | 541 | 179 | 11 | 15 | 504 | 13 | 545 | 0.0 | 569 |
MS.gene057635.t1 | AT4G34580 | 55.435 | 552 | 195 | 14 | 1 | 502 | 1 | 551 | 0.0 | 559 |
MS.gene057635.t1 | AT4G34580 | 55.435 | 552 | 195 | 14 | 1 | 502 | 1 | 551 | 0.0 | 559 |
MS.gene057635.t1 | AT4G39170 | 51.607 | 591 | 183 | 15 | 7 | 502 | 28 | 610 | 0.0 | 533 |
MS.gene057635.t1 | AT4G39170 | 51.433 | 593 | 183 | 15 | 7 | 502 | 28 | 612 | 0.0 | 531 |
MS.gene057635.t1 | AT2G16380 | 50.823 | 547 | 221 | 13 | 1 | 502 | 1 | 544 | 3.96e-178 | 511 |
MS.gene057635.t1 | AT2G16380 | 50.823 | 547 | 221 | 13 | 1 | 502 | 1 | 544 | 3.96e-178 | 511 |
MS.gene057635.t1 | AT2G18180 | 55.833 | 480 | 136 | 10 | 85 | 504 | 11 | 474 | 1.13e-177 | 508 |
MS.gene057635.t1 | AT2G18180 | 55.417 | 480 | 138 | 10 | 85 | 504 | 11 | 474 | 4.97e-175 | 501 |
MS.gene057635.t1 | AT2G18180 | 55.292 | 463 | 131 | 10 | 102 | 504 | 1 | 447 | 2.00e-167 | 481 |
MS.gene057635.t1 | AT2G21520 | 70.440 | 318 | 70 | 5 | 7 | 300 | 28 | 345 | 9.81e-162 | 473 |
MS.gene057635.t1 | AT2G21520 | 70.440 | 318 | 70 | 5 | 7 | 300 | 32 | 349 | 1.03e-161 | 473 |
MS.gene057635.t1 | AT2G21520 | 70.440 | 318 | 70 | 5 | 7 | 300 | 32 | 349 | 1.03e-161 | 473 |
MS.gene057635.t1 | AT2G16380 | 50.452 | 442 | 175 | 10 | 102 | 502 | 1 | 439 | 1.05e-141 | 415 |
MS.gene057635.t1 | AT1G19650 | 64.241 | 316 | 90 | 5 | 7 | 300 | 25 | 339 | 2.27e-139 | 409 |
MS.gene057635.t1 | AT1G19650 | 64.241 | 316 | 90 | 5 | 7 | 300 | 25 | 339 | 2.96e-138 | 412 |
MS.gene057635.t1 | AT3G24840 | 44.364 | 550 | 215 | 15 | 8 | 488 | 22 | 549 | 4.25e-138 | 410 |
MS.gene057635.t1 | AT3G24840 | 44.364 | 550 | 215 | 15 | 8 | 488 | 22 | 549 | 4.25e-138 | 410 |
MS.gene057635.t1 | AT3G24840 | 44.364 | 550 | 215 | 15 | 8 | 488 | 22 | 549 | 4.25e-138 | 410 |
MS.gene057635.t1 | AT3G24840 | 44.364 | 550 | 215 | 15 | 8 | 488 | 22 | 549 | 4.25e-138 | 410 |
MS.gene057635.t1 | AT3G24840 | 59.875 | 319 | 100 | 5 | 8 | 300 | 22 | 338 | 8.78e-132 | 394 |
MS.gene057635.t1 | AT3G24840 | 59.875 | 319 | 100 | 5 | 8 | 300 | 22 | 338 | 8.78e-132 | 394 |
MS.gene057635.t1 | AT3G24840 | 59.875 | 319 | 100 | 5 | 8 | 300 | 22 | 338 | 8.78e-132 | 394 |
MS.gene057635.t1 | AT1G75370 | 63.551 | 321 | 90 | 4 | 7 | 300 | 28 | 348 | 2.75e-127 | 384 |
MS.gene057635.t1 | AT1G75370 | 63.551 | 321 | 90 | 4 | 7 | 300 | 28 | 348 | 1.83e-126 | 384 |
MS.gene057635.t1 | AT1G19650 | 69.456 | 239 | 54 | 2 | 81 | 300 | 29 | 267 | 4.75e-119 | 360 |
MS.gene057635.t1 | AT5G56160 | 36.201 | 558 | 290 | 12 | 9 | 500 | 15 | 572 | 7.18e-112 | 343 |
MS.gene057635.t1 | AT5G56160 | 36.201 | 558 | 290 | 12 | 9 | 500 | 15 | 572 | 7.18e-112 | 343 |
MS.gene057635.t1 | AT5G56160 | 50.633 | 316 | 132 | 6 | 9 | 300 | 15 | 330 | 1.75e-109 | 334 |
MS.gene057635.t1 | AT1G55690 | 54.375 | 320 | 120 | 8 | 7 | 300 | 19 | 338 | 1.24e-107 | 333 |
MS.gene057635.t1 | AT1G55690 | 54.375 | 320 | 120 | 8 | 7 | 300 | 19 | 338 | 1.75e-107 | 333 |
MS.gene057635.t1 | AT1G55690 | 54.375 | 320 | 120 | 8 | 7 | 300 | 19 | 338 | 1.75e-107 | 333 |
MS.gene057635.t1 | AT1G55690 | 54.375 | 320 | 120 | 8 | 7 | 300 | 19 | 338 | 1.75e-107 | 333 |
MS.gene057635.t1 | AT1G55690 | 54.375 | 320 | 120 | 8 | 7 | 300 | 19 | 338 | 1.75e-107 | 333 |
MS.gene057635.t1 | AT5G47510 | 43.963 | 323 | 150 | 6 | 60 | 357 | 27 | 343 | 3.64e-96 | 295 |
MS.gene057635.t1 | AT5G47510 | 43.925 | 321 | 149 | 6 | 60 | 355 | 26 | 340 | 2.16e-95 | 294 |
MS.gene057635.t1 | AT5G47510 | 43.925 | 321 | 149 | 6 | 60 | 355 | 27 | 341 | 2.25e-95 | 294 |
MS.gene057635.t1 | AT5G47510 | 43.945 | 289 | 131 | 6 | 92 | 355 | 2 | 284 | 4.57e-84 | 263 |
MS.gene057635.t1 | AT1G72160 | 25.306 | 245 | 154 | 7 | 60 | 284 | 136 | 371 | 3.52e-15 | 78.6 |
MS.gene057635.t1 | AT5G47730 | 27.027 | 222 | 136 | 6 | 60 | 261 | 7 | 222 | 5.45e-15 | 76.6 |
MS.gene057635.t1 | AT5G47730 | 27.027 | 222 | 136 | 6 | 60 | 261 | 7 | 222 | 5.45e-15 | 76.6 |
MS.gene057635.t1 | AT1G01630 | 26.667 | 240 | 156 | 6 | 45 | 275 | 17 | 245 | 5.99e-15 | 75.1 |
MS.gene057635.t1 | AT4G08690 | 30.455 | 220 | 133 | 9 | 44 | 257 | 4 | 209 | 9.35e-14 | 72.4 |
MS.gene057635.t1 | AT4G08690 | 30.455 | 220 | 133 | 9 | 44 | 257 | 4 | 209 | 9.35e-14 | 72.4 |
MS.gene057635.t1 | AT4G08690 | 30.455 | 220 | 133 | 9 | 44 | 257 | 4 | 209 | 9.35e-14 | 72.4 |
MS.gene057635.t1 | AT1G75170 | 27.723 | 202 | 123 | 6 | 87 | 275 | 49 | 240 | 3.85e-13 | 70.5 |
MS.gene057635.t1 | AT1G75170 | 27.723 | 202 | 123 | 6 | 87 | 275 | 49 | 240 | 3.85e-13 | 70.5 |
MS.gene057635.t1 | AT1G55840 | 26.455 | 189 | 120 | 4 | 85 | 260 | 12 | 194 | 1.19e-12 | 68.9 |
MS.gene057635.t1 | AT1G55840 | 26.455 | 189 | 120 | 4 | 85 | 260 | 39 | 221 | 1.41e-12 | 69.3 |
MS.gene057635.t1 | AT1G22530 | 24.088 | 274 | 165 | 11 | 84 | 345 | 333 | 575 | 1.45e-11 | 67.4 |
MS.gene057635.t1 | AT1G22530 | 24.088 | 274 | 165 | 11 | 84 | 345 | 367 | 609 | 2.14e-11 | 67.0 |
Find 115 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTATTGCTGCCTTCTTTA+AGG | 0.090734 | 4.2:+36494994 | None:intergenic |
GAAACTACCTTCAAGATTTC+TGG | 0.128425 | 4.2:+36493430 | None:intergenic |
CAGAATTATGGCCATGGTTT+TGG | 0.149183 | 4.2:-36492712 | MS.gene057635:CDS |
TCAATGCTGGTTCGGGATTT+AGG | 0.174214 | 4.2:-36493915 | MS.gene057635:CDS |
TTGAGCAATTCCTCCATTTC+AGG | 0.178864 | 4.2:+36492486 | None:intergenic |
AGGTCTTGAGATTGAATATT+TGG | 0.201747 | 4.2:-36495044 | MS.gene057635:CDS |
CTCCAATGGAGGAGGGAATT+TGG | 0.273143 | 4.2:-36494634 | MS.gene057635:CDS |
CAGTGAACTTCCAGAGTTCT+TGG | 0.309109 | 4.2:-36493518 | MS.gene057635:CDS |
TTGAGGGTAATAGTTCTTCT+AGG | 0.323926 | 4.2:+36494846 | None:intergenic |
TTCATCATCAATGCTGGTTC+GGG | 0.333695 | 4.2:-36493922 | MS.gene057635:CDS |
ACCTTCCATGCCACCTGAAA+TGG | 0.343417 | 4.2:-36492499 | MS.gene057635:CDS |
GTGCCTTCGCCCCTTCTTGA+AGG | 0.373381 | 4.2:+36494949 | None:intergenic |
GGTATATATTGATGGCAATA+TGG | 0.374670 | 4.2:-36492616 | MS.gene057635:CDS |
TGAATGACAAACAAGTATCT+TGG | 0.383285 | 4.2:-36492964 | MS.gene057635:CDS |
GATTTCAAGGCAACTTGCTC+TGG | 0.385618 | 4.2:+36493707 | None:intergenic |
AGAAGGGGCGAAGGCACAAC+AGG | 0.395434 | 4.2:-36494943 | MS.gene057635:CDS |
GGTAACAATGTATGCAAGAA+TGG | 0.412286 | 4.2:-36492756 | MS.gene057635:CDS |
CCCAACCTTTCTATGTAAAC+AGG | 0.413197 | 4.2:+36494402 | None:intergenic |
AGTGAACTTCCAGAGTTCTT+GGG | 0.420010 | 4.2:-36493517 | MS.gene057635:CDS |
TGATCAAAGCACAACTATCT+TGG | 0.420976 | 4.2:-36494251 | MS.gene057635:CDS |
GTTCATCATCAATGCTGGTT+CGG | 0.428392 | 4.2:-36493923 | MS.gene057635:CDS |
CAACTCCATGTGTTCCTTGA+GGG | 0.429365 | 4.2:+36494439 | None:intergenic |
ACTGATGCAAGTAACGACTA+TGG | 0.432973 | 4.2:-36494361 | MS.gene057635:CDS |
AATCGATACAGAAGAGTTGC+AGG | 0.433152 | 4.2:-36494897 | MS.gene057635:CDS |
GTTCAAACATTCCTTCAAGA+AGG | 0.436645 | 4.2:-36494960 | MS.gene057635:CDS |
TTACATAGAAAGGTTGGGTT+TGG | 0.438060 | 4.2:-36494397 | MS.gene057635:CDS |
ATCAGTACAAAATGATCAAA+AGG | 0.448986 | 4.2:-36492936 | MS.gene057635:CDS |
TCGAGGTGGTCTTGGGATCA+AGG | 0.450087 | 4.2:+36493866 | None:intergenic |
GGTAACTCGGTATATATTGA+TGG | 0.451076 | 4.2:-36492624 | MS.gene057635:CDS |
TCCATTTCAGGTGGCATGGA+AGG | 0.453045 | 4.2:+36492498 | None:intergenic |
CGTTGATGTGCAGATTGCTT+TGG | 0.457244 | 4.2:-36492777 | MS.gene057635:intron |
GAAGACCTGTTTACATAGAA+AGG | 0.458189 | 4.2:-36494407 | MS.gene057635:CDS |
GAATGACAAACAAGTATCTT+GGG | 0.458886 | 4.2:-36492963 | MS.gene057635:CDS |
ACCTGTTTACATAGAAAGGT+TGG | 0.459238 | 4.2:-36494403 | MS.gene057635:CDS |
CCTGTTTACATAGAAAGGTT+GGG | 0.459264 | 4.2:-36494402 | MS.gene057635:CDS |
CAAGGGCTTCAGAAGATTGA+TGG | 0.460929 | 4.2:-36494058 | MS.gene057635:CDS |
GATGATGAACATACGGTTCA+AGG | 0.463960 | 4.2:+36493936 | None:intergenic |
GTACATGGTACTTAAGATAT+CGG | 0.465167 | 4.2:+36494337 | None:intergenic |
CACCAAATTCCCTCCTCCAT+TGG | 0.472756 | 4.2:+36494632 | None:intergenic |
CATCAATCTTCTGAAGCCCT+TGG | 0.481135 | 4.2:+36494059 | None:intergenic |
TTCAAACATTCCTTCAAGAA+GGG | 0.481510 | 4.2:-36494959 | MS.gene057635:CDS |
TAATTGATTGATCAGGTCCT+AGG | 0.483244 | 4.2:-36493739 | MS.gene057635:intron |
AGGAACACATGGAGTTGATA+AGG | 0.483607 | 4.2:-36494433 | MS.gene057635:CDS |
TTTGCTGCAATTGAACAAGC+AGG | 0.492349 | 4.2:+36494283 | None:intergenic |
ATGACTGCAATTGCATTGTA+TGG | 0.496484 | 4.2:-36492645 | MS.gene057635:CDS |
AACCATGGCCATAATTCTGC+CGG | 0.506924 | 4.2:+36492716 | None:intergenic |
TTCCGGCAGAATTATGGCCA+TGG | 0.507474 | 4.2:-36492718 | MS.gene057635:CDS |
AAGATTTCTGGATCATTCCA+TGG | 0.509508 | 4.2:+36493442 | None:intergenic |
TGCTCTGGTATTTGTTACCT+AGG | 0.510194 | 4.2:+36493722 | None:intergenic |
TTCCTCCATTTCAGGTGGCA+TGG | 0.511464 | 4.2:+36492494 | None:intergenic |
GTTTGTGATTGCAGTTCCAC+TGG | 0.517448 | 4.2:-36492157 | MS.gene057635:intron |
GAAAACTTTATCCGAAGTTG+AGG | 0.528688 | 4.2:-36493292 | MS.gene057635:CDS |
GATGAAAAGAGAACAAGGCT+TGG | 0.532278 | 4.2:-36495019 | MS.gene057635:CDS |
ATTCACCTTCTCTTCTAGAT+CGG | 0.535193 | 4.2:+36492536 | None:intergenic |
TCTTGAGATTGAATATTTGG+AGG | 0.535896 | 4.2:-36495041 | MS.gene057635:CDS |
AGAGTTGGCTACAGCCAAGA+AGG | 0.536487 | 4.2:-36492430 | MS.gene057635:intron |
TGCATATCAGTTCGACACCT+TGG | 0.542514 | 4.2:-36492993 | MS.gene057635:CDS |
CAGATATGCTCCAATGGAGG+AGG | 0.542666 | 4.2:-36494642 | MS.gene057635:CDS |
ATGATCATCATATGATGCTA+AGG | 0.545044 | 4.2:-36494817 | MS.gene057635:intron |
CGTATGTTCATCATCAATGC+TGG | 0.547791 | 4.2:-36493928 | MS.gene057635:CDS |
GTGAACTTCCAGAGTTCTTG+GGG | 0.551248 | 4.2:-36493516 | MS.gene057635:CDS |
TGGTTGCATGCTTTCTGACA+AGG | 0.554475 | 4.2:-36493467 | MS.gene057635:CDS |
TTTGTCATTCATTGAGACCA+AGG | 0.554617 | 4.2:+36492976 | None:intergenic |
TCTAAACCGTGTCGATACAC+TGG | 0.555753 | 4.2:-36492457 | MS.gene057635:CDS |
ATTTGGTGCCGATACTATCA+TGG | 0.556047 | 4.2:-36494617 | MS.gene057635:CDS |
GAATGATCCAGAAATCTTGA+AGG | 0.557107 | 4.2:-36493437 | MS.gene057635:intron |
CATTTCCGTTGATGATCACA+TGG | 0.558838 | 4.2:-36492577 | MS.gene057635:CDS |
CGATACACTGGAGCAAGAGT+TGG | 0.564279 | 4.2:-36492445 | MS.gene057635:CDS |
TCAACTCCATGTGTTCCTTG+AGG | 0.566578 | 4.2:+36494438 | None:intergenic |
TGCTTTCTGACAAGGGACCA+TGG | 0.567626 | 4.2:-36493459 | MS.gene057635:CDS |
TACTACCCTCAAGGAACACA+TGG | 0.568354 | 4.2:-36494444 | MS.gene057635:CDS |
AATGTAGATTCTTGAGAGCA+AGG | 0.568501 | 4.2:-36494699 | MS.gene057635:intron |
TTCCATGCCACCTGAAATGG+AGG | 0.574584 | 4.2:-36492496 | MS.gene057635:CDS |
CAGCATTGATGATGAACATA+CGG | 0.574837 | 4.2:+36493929 | None:intergenic |
TGATCATCAACGGAAATGAC+AGG | 0.575643 | 4.2:+36492582 | None:intergenic |
TCAAACATTCCTTCAAGAAG+GGG | 0.577257 | 4.2:-36494958 | MS.gene057635:CDS |
GTTCTAAAATACTACCCTCA+AGG | 0.581819 | 4.2:-36494453 | MS.gene057635:CDS |
GAAGCTCCACTTGCCTAGCA+AGG | 0.584248 | 4.2:+36492310 | None:intergenic |
GGTTGCATGCTTTCTGACAA+GGG | 0.584666 | 4.2:-36493466 | MS.gene057635:CDS |
CATGACCGATCTAGAAGAGA+AGG | 0.585875 | 4.2:-36492541 | MS.gene057635:CDS |
AGCAATTCCTCCATTTCAGG+TGG | 0.586975 | 4.2:+36492489 | None:intergenic |
AAATACCTCCATGATAGTAT+CGG | 0.587094 | 4.2:+36494609 | None:intergenic |
ACACATGGAGTTGATAAGGA+TGG | 0.589217 | 4.2:-36494429 | MS.gene057635:CDS |
AGACGAAGGAGTGTGTCAAA+AGG | 0.590474 | 4.2:-36493253 | MS.gene057635:intron |
CACTTGATGATGCCCTTGCT+AGG | 0.595315 | 4.2:-36492323 | MS.gene057635:CDS |
AATTGCATTGTATGGTAACT+CGG | 0.595923 | 4.2:-36492637 | MS.gene057635:CDS |
GGTGGTCTTGGGATCAAGGA+AGG | 0.597891 | 4.2:+36493870 | None:intergenic |
GCTGCAAGAGATCTCATCCA+AGG | 0.597936 | 4.2:-36494076 | MS.gene057635:CDS |
AAAACAATCGTCGAAGACGA+AGG | 0.598967 | 4.2:-36493267 | MS.gene057635:CDS |
AAGGCTTGGATCCTTAAAGA+AGG | 0.599891 | 4.2:-36495005 | MS.gene057635:CDS |
TAGAGCCATGTGATCATCAA+CGG | 0.599949 | 4.2:+36492572 | None:intergenic |
AAGCTCCACTTGCCTAGCAA+GGG | 0.609549 | 4.2:+36492311 | None:intergenic |
ACAACTATCTTGGATGTCCA+AGG | 0.610723 | 4.2:-36494241 | MS.gene057635:CDS |
TGACGTTCATCCGCATGACA+CGG | 0.612693 | 4.2:-36492683 | MS.gene057635:CDS |
CTGCAAGAGATCTCATCCAA+GGG | 0.614690 | 4.2:-36494075 | MS.gene057635:CDS |
ATTCCTTCAAGAAGGGGCGA+AGG | 0.615207 | 4.2:-36494952 | MS.gene057635:CDS |
TGTGGGCAGATATGCTCCAA+TGG | 0.615883 | 4.2:-36494648 | MS.gene057635:CDS |
TGGAGGATGAAAAGAGAACA+AGG | 0.626518 | 4.2:-36495024 | MS.gene057635:CDS |
CCTTAGTAATTAATTACCAG+TGG | 0.627692 | 4.2:+36492141 | None:intergenic |
TTGGTATACTCCGTGTCATG+CGG | 0.646880 | 4.2:+36492673 | None:intergenic |
CTTGCTCCAGTGTATCGACA+CGG | 0.648033 | 4.2:+36492451 | None:intergenic |
TATCTTGGATGTCCAAGGAG+TGG | 0.654369 | 4.2:-36494236 | MS.gene057635:intron |
ACTTGTACTTGTGCAGACAA+AGG | 0.654424 | 4.2:-36493490 | MS.gene057635:CDS |
CGTCATGATTCCCAAAACCA+TGG | 0.657898 | 4.2:+36492701 | None:intergenic |
AGATATGCTCCAATGGAGGA+GGG | 0.660017 | 4.2:-36494641 | MS.gene057635:CDS |
TGACAAACAAGTATCTTGGG+AGG | 0.664438 | 4.2:-36492960 | MS.gene057635:CDS |
TGATGCCCTTGCTAGGCAAG+TGG | 0.666904 | 4.2:-36492316 | MS.gene057635:CDS |
GAACTTCCAGAGTTCTTGGG+GGG | 0.675384 | 4.2:-36493514 | MS.gene057635:CDS |
GGGCAGATATGCTCCAATGG+AGG | 0.678590 | 4.2:-36494645 | MS.gene057635:CDS |
CAGGGTTATATCTGTCATCG+AGG | 0.687126 | 4.2:-36494924 | MS.gene057635:CDS |
TGAACTTCCAGAGTTCTTGG+GGG | 0.688265 | 4.2:-36493515 | MS.gene057635:CDS |
TGTACTTGTGCAGACAAAGG+TGG | 0.715199 | 4.2:-36493487 | MS.gene057635:CDS |
GAAGGGGCGAAGGCACAACA+GGG | 0.715484 | 4.2:-36494942 | MS.gene057635:CDS |
TGATGGTGACAACTATCCTG+AGG | 0.717578 | 4.2:-36494041 | MS.gene057635:intron |
TGGTGCCGATACTATCATGG+AGG | 0.741681 | 4.2:-36494614 | MS.gene057635:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTATTTGTTCCTTTTTAT+TGG | - | chr4.2:36494856-36494875 | MS.gene057635:CDS | 15.0% |
!! | AAAGAAAAAGAAGAAAAAGT+TGG | - | chr4.2:36494938-36494957 | MS.gene057635:CDS | 20.0% |
!! | ATATTACTAATTGATTGATC+AGG | - | chr4.2:36493463-36493482 | MS.gene057635:CDS | 20.0% |
!! | ATATTTATAGAAACAATGCA+TGG | + | chr4.2:36495000-36495019 | None:intergenic | 20.0% |
!! | GAATATCATAAGAAAAAGAA+AGG | + | chr4.2:36494043-36494062 | None:intergenic | 20.0% |
!! | TGATCAATCAATTAGTAATA+TGG | + | chr4.2:36493464-36493483 | None:intergenic | 20.0% |
!!! | TTCTTTTTCTTATGATATTC+AGG | - | chr4.2:36494043-36494062 | MS.gene057635:CDS | 20.0% |
! | ATCAGTACAAAATGATCAAA+AGG | - | chr4.2:36494273-36494292 | MS.gene057635:CDS | 25.0% |
! | ATGAATTAGATGGTTCAAAA+CGG | - | chr4.2:36493877-36493896 | MS.gene057635:CDS | 25.0% |
! | GTGACTAACATAAATTCTTT+CGG | - | chr4.2:36492696-36492715 | MS.gene057635:CDS | 25.0% |
! | TAAAGAAGAAAATATAGACC+TGG | + | chr4.2:36493535-36493554 | None:intergenic | 25.0% |
! | TACAAAATAAAAAGCTTACG+TGG | + | chr4.2:36493373-36493392 | None:intergenic | 25.0% |
! | TATTCGTATTATGTGACATA+TGG | + | chr4.2:36493628-36493647 | None:intergenic | 25.0% |
! | TGAAAAAACAAAGCAAATGT+GGG | - | chr4.2:36492544-36492563 | MS.gene057635:CDS | 25.0% |
! | TTGAAAAAACAAAGCAAATG+TGG | - | chr4.2:36492543-36492562 | MS.gene057635:CDS | 25.0% |
!! | AAAAAGAAGAAAAAGTTGGT+AGG | - | chr4.2:36494942-36494961 | MS.gene057635:CDS | 25.0% |
!! | GGATTTAGAAATCAATTTTC+CGG | - | chr4.2:36494474-36494493 | MS.gene057635:CDS | 25.0% |
!! | TCTTTACTGTGTTGATAAAA+TGG | + | chr4.2:36494379-36494398 | None:intergenic | 25.0% |
!!! | AAATTCTTTCGGTTTTGTTA+AGG | - | chr4.2:36492707-36492726 | MS.gene057635:CDS | 25.0% |
!!! | ATTTAACTCCTTGTGTTTTT+TGG | - | chr4.2:36493663-36493682 | MS.gene057635:intron | 25.0% |
!!! | TTATTTTGTCAAGCATAATC+AGG | - | chr4.2:36494347-36494366 | MS.gene057635:CDS | 25.0% |
!!! | TTTAACTCCTTGTGTTTTTT+GGG | - | chr4.2:36493664-36493683 | MS.gene057635:intron | 25.0% |
!!! | TTTTTTCCTGATGAATTAGA+TGG | - | chr4.2:36493867-36493886 | MS.gene057635:CDS | 25.0% |
AAATACCTCCATGATAGTAT+CGG | + | chr4.2:36492603-36492622 | None:intergenic | 30.0% | |
AAATCTTGAAGGTAGTTTCA+CGG | - | chr4.2:36493783-36493802 | MS.gene057635:intron | 30.0% | |
AACTGTCTAATCAAAGCATA+AGG | + | chr4.2:36492457-36492476 | None:intergenic | 30.0% | |
AATTGCATTGTATGGTAACT+CGG | - | chr4.2:36494572-36494591 | MS.gene057635:intron | 30.0% | |
AGGTCTTGAGATTGAATATT+TGG | - | chr4.2:36492165-36492184 | MS.gene057635:intron | 30.0% | |
ATGATCATCATATGATGCTA+AGG | - | chr4.2:36492392-36492411 | MS.gene057635:intron | 30.0% | |
ATTTACTGTATGAGTCTCAA+GGG | + | chr4.2:36492421-36492440 | None:intergenic | 30.0% | |
CTTGAAACTATAAAGAAGTG+AGG | + | chr4.2:36493992-36494011 | None:intergenic | 30.0% | |
GAATGACAAACAAGTATCTT+GGG | - | chr4.2:36494246-36494265 | MS.gene057635:CDS | 30.0% | |
GTACATGGTACTTAAGATAT+CGG | + | chr4.2:36492875-36492894 | None:intergenic | 30.0% | |
TAAGTACTTACTGTATAGCA+TGG | - | chr4.2:36493081-36493100 | MS.gene057635:intron | 30.0% | |
TATTTACTGTATGAGTCTCA+AGG | + | chr4.2:36492422-36492441 | None:intergenic | 30.0% | |
TCTTGAGATTGAATATTTGG+AGG | - | chr4.2:36492168-36492187 | MS.gene057635:intron | 30.0% | |
TGAAAAGAAAAGTGGAACTA+AGG | + | chr4.2:36493247-36493266 | None:intergenic | 30.0% | |
TGAATGACAAACAAGTATCT+TGG | - | chr4.2:36494245-36494264 | MS.gene057635:CDS | 30.0% | |
TTCAAACATTCCTTCAAGAA+GGG | - | chr4.2:36492250-36492269 | MS.gene057635:intron | 30.0% | |
TTTGAACCATCTAATTCATC+AGG | + | chr4.2:36493876-36493895 | None:intergenic | 30.0% | |
! | ATAGTTTCAAGAGCATAGTT+TGG | - | chr4.2:36494001-36494020 | MS.gene057635:intron | 30.0% |
! | ATGATGATCATCATGTTTTG+AGG | + | chr4.2:36492383-36492402 | None:intergenic | 30.0% |
! | GGTATATATTGATGGCAATA+TGG | - | chr4.2:36494593-36494612 | MS.gene057635:intron | 30.0% |
! | TGTTAAGGATTTTGAATTCG+AGG | - | chr4.2:36492722-36492741 | MS.gene057635:CDS | 30.0% |
! | TGTTCCTTTTTATTGGCATT+AGG | - | chr4.2:36494863-36494882 | MS.gene057635:CDS | 30.0% |
!! | TGATGATCATCATGTTTTGA+GGG | + | chr4.2:36492382-36492401 | None:intergenic | 30.0% |
AACTTACTTCTGCTATAGCA+TGG | + | chr4.2:36494111-36494130 | None:intergenic | 35.0% | |
AATGTAGATTCTTGAGAGCA+AGG | - | chr4.2:36492510-36492529 | MS.gene057635:CDS | 35.0% | |
ACCTGTTTACATAGAAAGGT+TGG | - | chr4.2:36492806-36492825 | MS.gene057635:intron | 35.0% | |
ACTTATTGCTGCCTTCTTTA+AGG | + | chr4.2:36492218-36492237 | None:intergenic | 35.0% | |
AGTGCCTAATGCCAATAAAA+AGG | + | chr4.2:36494870-36494889 | None:intergenic | 35.0% | |
ATGACTGCAATTGCATTGTA+TGG | - | chr4.2:36494564-36494583 | MS.gene057635:intron | 35.0% | |
ATTCACCTTCTCTTCTAGAT+CGG | + | chr4.2:36494676-36494695 | None:intergenic | 35.0% | |
CAAGAAAAACAGTACCTTCT+TGG | + | chr4.2:36494796-36494815 | None:intergenic | 35.0% | |
CCTGTTTACATAGAAAGGTT+GGG | - | chr4.2:36492807-36492826 | MS.gene057635:intron | 35.0% | |
CGTATTATGTGACATATGGA+TGG | + | chr4.2:36493624-36493643 | None:intergenic | 35.0% | |
CTGTTAACCCAAAAAACACA+AGG | + | chr4.2:36493674-36493693 | None:intergenic | 35.0% | |
GAAAACTTTATCCGAAGTTG+AGG | - | chr4.2:36493917-36493936 | MS.gene057635:CDS | 35.0% | |
GAAACTACCTTCAAGATTTC+TGG | + | chr4.2:36493782-36493801 | None:intergenic | 35.0% | |
GAAGACCTGTTTACATAGAA+AGG | - | chr4.2:36492802-36492821 | MS.gene057635:intron | 35.0% | |
GAATGATCCAGAAATCTTGA+AGG | - | chr4.2:36493772-36493791 | MS.gene057635:intron | 35.0% | |
GGACTGTATGAAAAGAAAAG+TGG | + | chr4.2:36493255-36493274 | None:intergenic | 35.0% | |
GGTAACAATGTATGCAAGAA+TGG | - | chr4.2:36494453-36494472 | MS.gene057635:CDS | 35.0% | |
GGTAACTCGGTATATATTGA+TGG | - | chr4.2:36494585-36494604 | MS.gene057635:intron | 35.0% | |
GTAGGTAAAAATAGTACCTC+AGG | + | chr4.2:36493187-36493206 | None:intergenic | 35.0% | |
GTTCAAACATTCCTTCAAGA+AGG | - | chr4.2:36492249-36492268 | MS.gene057635:intron | 35.0% | |
TAATTGATTGATCAGGTCCT+AGG | - | chr4.2:36493470-36493489 | MS.gene057635:CDS | 35.0% | |
TCAAACATTCCTTCAAGAAG+GGG | - | chr4.2:36492251-36492270 | MS.gene057635:intron | 35.0% | |
TGATCAAAGCACAACTATCT+TGG | - | chr4.2:36492958-36492977 | MS.gene057635:CDS | 35.0% | |
TTACATAGAAAGGTTGGGTT+TGG | - | chr4.2:36492812-36492831 | MS.gene057635:intron | 35.0% | |
TTGAGGGTAATAGTTCTTCT+AGG | + | chr4.2:36492366-36492385 | None:intergenic | 35.0% | |
TTTGTCATTCATTGAGACCA+AGG | + | chr4.2:36494236-36494255 | None:intergenic | 35.0% | |
! | AAGATTTCTGGATCATTCCA+TGG | + | chr4.2:36493770-36493789 | None:intergenic | 35.0% |
! | AGAATTATGGCCATGGTTTT+GGG | - | chr4.2:36494498-36494517 | MS.gene057635:intron | 35.0% |
! | GATTGTTTTCTCCTCAACTT+CGG | + | chr4.2:36493931-36493950 | None:intergenic | 35.0% |
! | TCAATTTTCCGGCAGAATTA+TGG | - | chr4.2:36494485-36494504 | MS.gene057635:intron | 35.0% |
! | TTTTACCTACTCGAGCATAT+TGG | - | chr4.2:36493197-36493216 | MS.gene057635:intron | 35.0% |
! | TTTTGATACATACCACTCCT+TGG | + | chr4.2:36492988-36493007 | None:intergenic | 35.0% |
!! | CAGCATTGATGATGAACATA+CGG | + | chr4.2:36493283-36493302 | None:intergenic | 35.0% |
!! | GTTCTAAAATACTACCCTCA+AGG | - | chr4.2:36492756-36492775 | MS.gene057635:CDS | 35.0% |
!!! | GCAATTGCAGTCATTTTTGT+TGG | + | chr4.2:36494558-36494577 | None:intergenic | 35.0% |
AAAACAATCGTCGAAGACGA+AGG | - | chr4.2:36493942-36493961 | MS.gene057635:intron | 40.0% | |
AAGGCTTGGATCCTTAAAGA+AGG | - | chr4.2:36492204-36492223 | MS.gene057635:intron | 40.0% | |
AATCGATACAGAAGAGTTGC+AGG | - | chr4.2:36492312-36492331 | MS.gene057635:CDS | 40.0% | |
ACAACTATCTTGGATGTCCA+AGG | - | chr4.2:36492968-36492987 | MS.gene057635:CDS | 40.0% | |
ACAAGCAGGCATCTTAACAT+TGG | + | chr4.2:36492915-36492934 | None:intergenic | 40.0% | |
ACTGATGCAAGTAACGACTA+TGG | - | chr4.2:36492848-36492867 | MS.gene057635:intron | 40.0% | |
ACTGTATAGCATGGTTGATC+AGG | - | chr4.2:36493090-36493109 | MS.gene057635:intron | 40.0% | |
ACTTGTACTTGTGCAGACAA+AGG | - | chr4.2:36493719-36493738 | MS.gene057635:intron | 40.0% | |
AGTGAACTTCCAGAGTTCTT+GGG | - | chr4.2:36493692-36493711 | MS.gene057635:intron | 40.0% | |
CAAAGCAATCTGCACATCAA+CGG | + | chr4.2:36494434-36494453 | None:intergenic | 40.0% | |
CAACAAAGAATACGTTCTCG+AGG | - | chr4.2:36494078-36494097 | MS.gene057635:CDS | 40.0% | |
CCCAACCTTTCTATGTAAAC+AGG | + | chr4.2:36492810-36492829 | None:intergenic | 40.0% | |
CCTGCAAAATTGAAAGTGAG+TGG | + | chr4.2:36494180-36494199 | None:intergenic | 40.0% | |
CGTATGTTCATCATCAATGC+TGG | - | chr4.2:36493281-36493300 | MS.gene057635:CDS | 40.0% | |
CTGTATAGCATGGTTGATCA+GGG | - | chr4.2:36493091-36493110 | MS.gene057635:intron | 40.0% | |
GATGAAAAGAGAACAAGGCT+TGG | - | chr4.2:36492190-36492209 | MS.gene057635:intron | 40.0% | |
GATGATGAACATACGGTTCA+AGG | + | chr4.2:36493276-36493295 | None:intergenic | 40.0% | |
TAGAGCCATGTGATCATCAA+CGG | + | chr4.2:36494640-36494659 | None:intergenic | 40.0% | |
TGACAAACAAGTATCTTGGG+AGG | - | chr4.2:36494249-36494268 | MS.gene057635:CDS | 40.0% | |
TGATCATCAACGGAAATGAC+AGG | + | chr4.2:36494630-36494649 | None:intergenic | 40.0% | |
TGGAGGATGAAAAGAGAACA+AGG | - | chr4.2:36492185-36492204 | MS.gene057635:intron | 40.0% | |
TTGAACCAATATGCTCGAGT+AGG | + | chr4.2:36493205-36493224 | None:intergenic | 40.0% | |
TTGAGCAATTCCTCCATTTC+AGG | + | chr4.2:36494726-36494745 | None:intergenic | 40.0% | |
TTTGCTGCAATTGAACAAGC+AGG | + | chr4.2:36492929-36492948 | None:intergenic | 40.0% | |
! | AAAGCTTACGTGGATTTTCG+AGG | + | chr4.2:36493363-36493382 | None:intergenic | 40.0% |
! | CAGAATTATGGCCATGGTTT+TGG | - | chr4.2:36494497-36494516 | MS.gene057635:intron | 40.0% |
! | CCACTCACTTTCAATTTTGC+AGG | - | chr4.2:36494177-36494196 | MS.gene057635:intron | 40.0% |
! | GTTCATCATCAATGCTGGTT+CGG | - | chr4.2:36493286-36493305 | MS.gene057635:CDS | 40.0% |
! | TGCTCTGGTATTTGTTACCT+AGG | + | chr4.2:36493490-36493509 | None:intergenic | 40.0% |
!! | ACACATGGAGTTGATAAGGA+TGG | - | chr4.2:36492780-36492799 | MS.gene057635:intron | 40.0% |
!! | AGGAACACATGGAGTTGATA+AGG | - | chr4.2:36492776-36492795 | MS.gene057635:intron | 40.0% |
!! | ATTTGGTGCCGATACTATCA+TGG | - | chr4.2:36492592-36492611 | MS.gene057635:CDS | 40.0% |
!! | CATTTCCGTTGATGATCACA+TGG | - | chr4.2:36494632-36494651 | MS.gene057635:CDS | 40.0% |
!! | GTTCGGGATTTAGGATTTTG+TGG | - | chr4.2:36493303-36493322 | MS.gene057635:intron | 40.0% |
!! | TTCATCATCAATGCTGGTTC+GGG | - | chr4.2:36493287-36493306 | MS.gene057635:CDS | 40.0% |
AACCATGGCCATAATTCTGC+CGG | + | chr4.2:36494496-36494515 | None:intergenic | 45.0% | |
AGATATGCTCCAATGGAGGA+GGG | - | chr4.2:36492568-36492587 | MS.gene057635:CDS | 45.0% | |
AGCAATTCCTCCATTTCAGG+TGG | + | chr4.2:36494723-36494742 | None:intergenic | 45.0% | |
CAAAGAATACGTTCTCGAGG+AGG | - | chr4.2:36494081-36494100 | MS.gene057635:CDS | 45.0% | |
CAACTCCATGTGTTCCTTGA+GGG | + | chr4.2:36492773-36492792 | None:intergenic | 45.0% | |
CAAGGGCTTCAGAAGATTGA+TGG | - | chr4.2:36493151-36493170 | MS.gene057635:intron | 45.0% | |
CAGGGTTATATCTGTCATCG+AGG | - | chr4.2:36492285-36492304 | MS.gene057635:CDS | 45.0% | |
CAGTGAACTTCCAGAGTTCT+TGG | - | chr4.2:36493691-36493710 | MS.gene057635:intron | 45.0% | |
CATGACCGATCTAGAAGAGA+AGG | - | chr4.2:36494668-36494687 | MS.gene057635:CDS | 45.0% | |
CGTCATGATTCCCAAAACCA+TGG | + | chr4.2:36494511-36494530 | None:intergenic | 45.0% | |
CGTTGATGTGCAGATTGCTT+TGG | - | chr4.2:36494432-36494451 | MS.gene057635:CDS | 45.0% | |
CTGCAAGAGATCTCATCCAA+GGG | - | chr4.2:36493134-36493153 | MS.gene057635:intron | 45.0% | |
GGTTGCATGCTTTCTGACAA+GGG | - | chr4.2:36493743-36493762 | MS.gene057635:intron | 45.0% | |
GTCTTCTCAACTCTCGTACA+TGG | + | chr4.2:36492890-36492909 | None:intergenic | 45.0% | |
GTGAACTTCCAGAGTTCTTG+GGG | - | chr4.2:36493693-36493712 | MS.gene057635:intron | 45.0% | |
GTTTGTGATTGCAGTTCCAC+TGG | - | chr4.2:36495052-36495071 | MS.gene057635:CDS | 45.0% | |
TACTACCCTCAAGGAACACA+TGG | - | chr4.2:36492765-36492784 | MS.gene057635:CDS | 45.0% | |
TATCTTGGATGTCCAAGGAG+TGG | - | chr4.2:36492973-36492992 | MS.gene057635:CDS | 45.0% | |
TCAACTCCATGTGTTCCTTG+AGG | + | chr4.2:36492774-36492793 | None:intergenic | 45.0% | |
TGAACTTCCAGAGTTCTTGG+GGG | - | chr4.2:36493694-36493713 | MS.gene057635:intron | 45.0% | |
TGCATATCAGTTCGACACCT+TGG | - | chr4.2:36494216-36494235 | MS.gene057635:intron | 45.0% | |
TGGTTGCATGCTTTCTGACA+AGG | - | chr4.2:36493742-36493761 | MS.gene057635:intron | 45.0% | |
TGTACTTGTGCAGACAAAGG+TGG | - | chr4.2:36493722-36493741 | MS.gene057635:CDS | 45.0% | |
TTGGTATACTCCGTGTCATG+CGG | + | chr4.2:36494539-36494558 | None:intergenic | 45.0% | |
! | AGACGAAGGAGTGTGTCAAA+AGG | - | chr4.2:36493956-36493975 | MS.gene057635:intron | 45.0% |
! | GATTTCAAGGCAACTTGCTC+TGG | + | chr4.2:36493505-36493524 | None:intergenic | 45.0% |
! | TCTAAACCGTGTCGATACAC+TGG | - | chr4.2:36494752-36494771 | MS.gene057635:intron | 45.0% |
! | TGATGGTGACAACTATCCTG+AGG | - | chr4.2:36493168-36493187 | MS.gene057635:intron | 45.0% |
!! | ACCTGGCATCGATGATTTCA+AGG | + | chr4.2:36493518-36493537 | None:intergenic | 45.0% |
!! | CATCAATCTTCTGAAGCCCT+TGG | + | chr4.2:36493153-36493172 | None:intergenic | 45.0% |
!! | TCAATGCTGGTTCGGGATTT+AGG | - | chr4.2:36493294-36493313 | MS.gene057635:CDS | 45.0% |
!! | TGGATTTTCGAGGTGGTCTT+GGG | + | chr4.2:36493353-36493372 | None:intergenic | 45.0% |
AAGCTCCACTTGCCTAGCAA+GGG | + | chr4.2:36494901-36494920 | None:intergenic | 50.0% | |
ACCTTCCATGCCACCTGAAA+TGG | - | chr4.2:36494710-36494729 | MS.gene057635:intron | 50.0% | |
AGAGTTGGCTACAGCCAAGA+AGG | - | chr4.2:36494779-36494798 | MS.gene057635:intron | 50.0% | |
ATTCCTTCAAGAAGGGGCGA+AGG | - | chr4.2:36492257-36492276 | MS.gene057635:intron | 50.0% | |
CACCAAATTCCCTCCTCCAT+TGG | + | chr4.2:36492580-36492599 | None:intergenic | 50.0% | |
CAGATATGCTCCAATGGAGG+AGG | - | chr4.2:36492567-36492586 | MS.gene057635:CDS | 50.0% | |
CGATACACTGGAGCAAGAGT+TGG | - | chr4.2:36494764-36494783 | MS.gene057635:intron | 50.0% | |
CTCCAATGGAGGAGGGAATT+TGG | - | chr4.2:36492575-36492594 | MS.gene057635:CDS | 50.0% | |
GAACTTCCAGAGTTCTTGGG+GGG | - | chr4.2:36493695-36493714 | MS.gene057635:intron | 50.0% | |
GCCTTGAAATCATCGATGCC+AGG | - | chr4.2:36493514-36493533 | MS.gene057635:CDS | 50.0% | |
GCTGCAAGAGATCTCATCCA+AGG | - | chr4.2:36493133-36493152 | MS.gene057635:intron | 50.0% | |
TGACGTTCATCCGCATGACA+CGG | - | chr4.2:36494526-36494545 | MS.gene057635:intron | 50.0% | |
TGCTTTCTGACAAGGGACCA+TGG | - | chr4.2:36493750-36493769 | MS.gene057635:intron | 50.0% | |
TGTGGGCAGATATGCTCCAA+TGG | - | chr4.2:36492561-36492580 | MS.gene057635:CDS | 50.0% | |
TTCCATGCCACCTGAAATGG+AGG | - | chr4.2:36494713-36494732 | MS.gene057635:intron | 50.0% | |
TTCCGGCAGAATTATGGCCA+TGG | - | chr4.2:36494491-36494510 | MS.gene057635:intron | 50.0% | |
! | CTTGCTCCAGTGTATCGACA+CGG | + | chr4.2:36494761-36494780 | None:intergenic | 50.0% |
! | TCCATTTCAGGTGGCATGGA+AGG | + | chr4.2:36494714-36494733 | None:intergenic | 50.0% |
! | TTCCTCCATTTCAGGTGGCA+TGG | + | chr4.2:36494718-36494737 | None:intergenic | 50.0% |
!! | CACTTGATGATGCCCTTGCT+AGG | - | chr4.2:36494886-36494905 | MS.gene057635:CDS | 50.0% |
!! | GCTTACGTGGATTTTCGAGG+TGG | + | chr4.2:36493360-36493379 | None:intergenic | 50.0% |
!! | GTGGATTTTCGAGGTGGTCT+TGG | + | chr4.2:36493354-36493373 | None:intergenic | 50.0% |
!! | TGGTGCCGATACTATCATGG+AGG | - | chr4.2:36492595-36492614 | MS.gene057635:CDS | 50.0% |
CAAGTACCCCCCAAGAACTC+TGG | + | chr4.2:36493704-36493723 | None:intergenic | 55.0% | |
GAAGCTCCACTTGCCTAGCA+AGG | + | chr4.2:36494902-36494921 | None:intergenic | 55.0% | |
GGGCAGATATGCTCCAATGG+AGG | - | chr4.2:36492564-36492583 | MS.gene057635:CDS | 55.0% | |
TGATGCCCTTGCTAGGCAAG+TGG | - | chr4.2:36494893-36494912 | MS.gene057635:CDS | 55.0% | |
! | GGTGGTCTTGGGATCAAGGA+AGG | + | chr4.2:36493342-36493361 | None:intergenic | 55.0% |
! | TCGAGGTGGTCTTGGGATCA+AGG | + | chr4.2:36493346-36493365 | None:intergenic | 55.0% |
GTGCCTTCGCCCCTTCTTGA+AGG | + | chr4.2:36492263-36492282 | None:intergenic | 60.0% | |
! | AGAAGGGGCGAAGGCACAAC+AGG | - | chr4.2:36492266-36492285 | MS.gene057635:intron | 60.0% |
! | GAAGGGGCGAAGGCACAACA+GGG | - | chr4.2:36492267-36492286 | MS.gene057635:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 36492154 | 36495077 | 36492154 | ID=MS.gene057635 |
chr4.2 | mRNA | 36492154 | 36495077 | 36492154 | ID=MS.gene057635.t1;Parent=MS.gene057635 |
chr4.2 | exon | 36494818 | 36495077 | 36494818 | ID=MS.gene057635.t1.exon1;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36494818 | 36495077 | 36494818 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36494615 | 36494714 | 36494615 | ID=MS.gene057635.t1.exon2;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36494615 | 36494714 | 36494615 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36494341 | 36494502 | 36494341 | ID=MS.gene057635.t1.exon3;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36494341 | 36494502 | 36494341 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36494237 | 36494308 | 36494237 | ID=MS.gene057635.t1.exon4;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36494237 | 36494308 | 36494237 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36494042 | 36494119 | 36494042 | ID=MS.gene057635.t1.exon5;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36494042 | 36494119 | 36494042 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36493858 | 36493959 | 36493858 | ID=MS.gene057635.t1.exon6;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36493858 | 36493959 | 36493858 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36493721 | 36493746 | 36493721 | ID=MS.gene057635.t1.exon7;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36493721 | 36493746 | 36493721 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36493438 | 36493537 | 36493438 | ID=MS.gene057635.t1.exon8;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36493438 | 36493537 | 36493438 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36493254 | 36493316 | 36493254 | ID=MS.gene057635.t1.exon9;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36493254 | 36493316 | 36493254 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36492924 | 36493032 | 36492924 | ID=MS.gene057635.t1.exon10;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36492924 | 36493032 | 36492924 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36492431 | 36492786 | 36492431 | ID=MS.gene057635.t1.exon11;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36492431 | 36492786 | 36492431 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36492272 | 36492346 | 36492272 | ID=MS.gene057635.t1.exon12;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36492272 | 36492346 | 36492272 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
chr4.2 | exon | 36492154 | 36492165 | 36492154 | ID=MS.gene057635.t1.exon13;Parent=MS.gene057635.t1 |
chr4.2 | CDS | 36492154 | 36492165 | 36492154 | ID=cds.MS.gene057635.t1;Parent=MS.gene057635.t1 |
Gene Sequence |
Protein sequence |