Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057731.t1 | XP_013456514.1 | 94.9 | 772 | 38 | 1 | 1 | 771 | 1 | 772 | 0.00E+00 | 1447.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057731.t1 | Q9C6C3 | 62.7 | 788 | 262 | 10 | 3 | 772 | 2 | 775 | 9.3e-270 | 931.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057731.t1 | A0A072UXE8 | 94.9 | 772 | 38 | 1 | 1 | 771 | 1 | 772 | 0.0e+00 | 1447.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene057731 | MS.gene052299 | PPI |
MS.gene057731 | MS.gene003381 | PPI |
MS.gene057731 | MS.gene031837 | PPI |
MS.gene057731 | MS.gene28931 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057731.t1 | MTR_4g074170 | 96.503 | 772 | 26 | 1 | 1 | 771 | 1 | 772 | 0.0 | 1545 |
MS.gene057731.t1 | MTR_7g020860 | 47.497 | 819 | 363 | 11 | 5 | 759 | 3 | 818 | 0.0 | 719 |
MS.gene057731.t1 | MTR_8g100100 | 44.665 | 806 | 387 | 11 | 5 | 768 | 3 | 791 | 0.0 | 660 |
MS.gene057731.t1 | MTR_8g100100 | 44.335 | 812 | 387 | 12 | 5 | 768 | 3 | 797 | 0.0 | 654 |
MS.gene057731.t1 | MTR_3g098680 | 44.875 | 800 | 379 | 12 | 4 | 756 | 2 | 786 | 0.0 | 648 |
MS.gene057731.t1 | MTR_7g020860 | 51.343 | 633 | 265 | 8 | 5 | 596 | 3 | 633 | 0.0 | 633 |
MS.gene057731.t1 | MTR_6g080710 | 42.308 | 130 | 56 | 3 | 481 | 607 | 16 | 129 | 5.23e-23 | 100 |
MS.gene057731.t1 | MTR_2g080950 | 42.647 | 136 | 54 | 5 | 483 | 614 | 18 | 133 | 2.33e-22 | 102 |
MS.gene057731.t1 | MTR_8g464390 | 40.288 | 139 | 53 | 5 | 483 | 614 | 18 | 133 | 2.68e-21 | 98.6 |
MS.gene057731.t1 | MTR_8g038400 | 36.154 | 130 | 70 | 5 | 480 | 608 | 20 | 137 | 1.44e-16 | 82.8 |
MS.gene057731.t1 | MTR_8g088320 | 39.286 | 112 | 50 | 4 | 490 | 597 | 21 | 118 | 3.24e-16 | 81.3 |
MS.gene057731.t1 | MTR_2g030230 | 37.615 | 109 | 56 | 3 | 490 | 597 | 30 | 127 | 1.39e-15 | 79.3 |
MS.gene057731.t1 | MTR_1g069000 | 46.053 | 76 | 39 | 1 | 484 | 559 | 10 | 83 | 9.79e-15 | 78.2 |
MS.gene057731.t1 | MTR_3g017500 | 46.429 | 84 | 41 | 3 | 480 | 562 | 24 | 104 | 1.43e-14 | 76.6 |
MS.gene057731.t1 | MTR_8g067080 | 52.308 | 65 | 29 | 1 | 490 | 554 | 22 | 84 | 2.37e-14 | 76.6 |
MS.gene057731.t1 | MTR_8g471110 | 52.308 | 65 | 29 | 1 | 490 | 554 | 22 | 84 | 2.37e-14 | 76.6 |
MS.gene057731.t1 | MTR_8g067080 | 52.308 | 65 | 29 | 1 | 490 | 554 | 22 | 84 | 2.41e-14 | 76.6 |
MS.gene057731.t1 | MTR_3g017500 | 45.349 | 86 | 43 | 3 | 480 | 564 | 54 | 136 | 2.70e-14 | 76.3 |
MS.gene057731.t1 | MTR_8g067090 | 50.769 | 65 | 30 | 1 | 490 | 554 | 22 | 84 | 1.29e-13 | 74.3 |
MS.gene057731.t1 | MTR_8g471120 | 50.769 | 65 | 30 | 1 | 490 | 554 | 22 | 84 | 1.29e-13 | 74.3 |
MS.gene057731.t1 | MTR_7g099830 | 43.421 | 76 | 41 | 1 | 484 | 559 | 10 | 83 | 2.93e-13 | 73.2 |
MS.gene057731.t1 | MTR_5g043640 | 36.634 | 101 | 61 | 1 | 681 | 781 | 90 | 187 | 8.66e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057731.t1 | AT1G60860 | 63.464 | 791 | 253 | 10 | 3 | 773 | 2 | 776 | 0.0 | 1001 |
MS.gene057731.t1 | AT1G10870 | 63.671 | 790 | 250 | 11 | 3 | 772 | 2 | 774 | 0.0 | 994 |
MS.gene057731.t1 | AT1G10870 | 63.224 | 794 | 252 | 10 | 3 | 772 | 2 | 779 | 0.0 | 991 |
MS.gene057731.t1 | AT1G60860 | 61.821 | 681 | 224 | 10 | 113 | 773 | 1 | 665 | 0.0 | 829 |
MS.gene057731.t1 | AT1G60860 | 59.709 | 618 | 213 | 10 | 175 | 772 | 3 | 604 | 0.0 | 725 |
MS.gene057731.t1 | AT5G13300 | 47.631 | 823 | 364 | 13 | 5 | 769 | 3 | 816 | 0.0 | 723 |
MS.gene057731.t1 | AT5G61980 | 45.215 | 836 | 376 | 13 | 5 | 771 | 3 | 825 | 0.0 | 694 |
MS.gene057731.t1 | AT5G54310 | 40.714 | 140 | 54 | 4 | 483 | 615 | 18 | 135 | 1.07e-21 | 100 |
MS.gene057731.t1 | AT3G17660 | 43.103 | 116 | 48 | 3 | 488 | 603 | 26 | 123 | 1.95e-21 | 93.2 |
MS.gene057731.t1 | AT3G17660 | 41.880 | 117 | 48 | 3 | 488 | 603 | 26 | 123 | 3.59e-21 | 94.0 |
MS.gene057731.t1 | AT3G17660 | 41.880 | 117 | 48 | 3 | 488 | 603 | 26 | 123 | 6.39e-21 | 93.6 |
MS.gene057731.t1 | AT3G07940 | 51.316 | 76 | 34 | 2 | 488 | 562 | 57 | 130 | 1.29e-17 | 84.3 |
MS.gene057731.t1 | AT3G07940 | 51.316 | 76 | 34 | 2 | 488 | 562 | 57 | 130 | 3.92e-17 | 84.7 |
MS.gene057731.t1 | AT4G05330 | 39.640 | 111 | 55 | 3 | 488 | 597 | 25 | 124 | 4.13e-16 | 81.3 |
MS.gene057731.t1 | AT4G05330 | 39.640 | 111 | 55 | 3 | 488 | 597 | 25 | 124 | 4.13e-16 | 81.3 |
MS.gene057731.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 490 | 597 | 27 | 124 | 7.25e-16 | 80.5 |
MS.gene057731.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 490 | 597 | 27 | 124 | 7.25e-16 | 80.5 |
MS.gene057731.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 490 | 597 | 27 | 124 | 7.25e-16 | 80.5 |
MS.gene057731.t1 | AT4G21160 | 38.532 | 109 | 55 | 3 | 490 | 597 | 27 | 124 | 7.25e-16 | 80.5 |
MS.gene057731.t1 | AT2G35210 | 32.571 | 175 | 103 | 4 | 479 | 652 | 11 | 171 | 6.75e-15 | 78.2 |
MS.gene057731.t1 | AT2G35210 | 33.714 | 175 | 101 | 5 | 479 | 652 | 11 | 171 | 7.38e-15 | 77.8 |
MS.gene057731.t1 | AT3G17660 | 35.043 | 117 | 46 | 3 | 488 | 603 | 26 | 113 | 3.81e-14 | 73.2 |
MS.gene057731.t1 | AT2G37550 | 44.156 | 77 | 41 | 1 | 483 | 559 | 9 | 83 | 7.71e-14 | 75.1 |
MS.gene057731.t1 | AT2G37550 | 44.156 | 77 | 41 | 1 | 483 | 559 | 9 | 83 | 7.71e-14 | 75.1 |
MS.gene057731.t1 | AT4G17890 | 54.688 | 64 | 27 | 1 | 490 | 553 | 25 | 86 | 9.72e-14 | 74.3 |
MS.gene057731.t1 | AT4G17890 | 51.429 | 70 | 32 | 1 | 484 | 553 | 19 | 86 | 1.08e-13 | 74.7 |
MS.gene057731.t1 | AT5G46750 | 51.429 | 70 | 32 | 1 | 484 | 553 | 16 | 83 | 2.21e-13 | 73.6 |
MS.gene057731.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 483 | 557 | 9 | 81 | 2.61e-13 | 73.6 |
MS.gene057731.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 483 | 557 | 9 | 81 | 2.61e-13 | 73.6 |
MS.gene057731.t1 | AT3G53710 | 44.000 | 75 | 40 | 1 | 483 | 557 | 9 | 81 | 2.61e-13 | 73.6 |
MS.gene057731.t1 | AT2G03430 | 38.235 | 102 | 60 | 1 | 681 | 782 | 83 | 181 | 3.73e-12 | 67.8 |
Find 165 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCACTAAATGAGGATATTT+TGG | 0.124193 | 4.4:+36050378 | MS.gene057731:CDS |
ATACTTATTGTAATTCTATT+TGG | 0.131807 | 4.4:+36051664 | MS.gene057731:CDS |
TTGGAGTTATTCAATAATTT+TGG | 0.164431 | 4.4:+36051639 | MS.gene057731:CDS |
GGCATCCATTATTGCACTTA+TGG | 0.180506 | 4.4:-36048930 | None:intergenic |
TGAAGATAGGAACCTGTTTC+TGG | 0.200167 | 4.4:-36042363 | None:intergenic |
ATCCTCTGCATCCATCTTTA+TGG | 0.222480 | 4.4:-36050431 | None:intergenic |
TAATTCTGATAGTACATTAA+TGG | 0.243026 | 4.4:+36053066 | MS.gene057731:CDS |
GATTCCGTTCAAGGCATAAT+AGG | 0.273907 | 4.4:+36050350 | MS.gene057731:CDS |
TCTTCATATTTCGTGTTTAT+CGG | 0.282872 | 4.4:-36052923 | None:intergenic |
GGTTTGGGAACCTACCATTT+TGG | 0.288939 | 4.4:+36051620 | MS.gene057731:CDS |
TGTTTATATCAGCACCAAAT+TGG | 0.300897 | 4.4:-36053102 | None:intergenic |
AGAAACAGCTGATGAGTTAA+AGG | 0.304443 | 4.4:+36043727 | MS.gene057731:CDS |
TACTTATTGTAATTCTATTT+GGG | 0.314969 | 4.4:+36051665 | MS.gene057731:CDS |
GCTGATTCATTAGAAGCATT+TGG | 0.333082 | 4.4:+36044539 | MS.gene057731:CDS |
GCTGATGGCTCCCGTCCTTC+AGG | 0.333354 | 4.4:+36049884 | MS.gene057731:CDS |
TTAATCCTCAAACAGGCTTC+AGG | 0.336208 | 4.4:-36052986 | None:intergenic |
GGAATCCATAAGTGCAATAA+TGG | 0.336938 | 4.4:+36048925 | MS.gene057731:CDS |
AAGTATTCCTACCGCGGGTT+TGG | 0.339913 | 4.4:-36050208 | None:intergenic |
ATCTCCTCAGGACAGCTATA+GGG | 0.341643 | 4.4:+36044489 | MS.gene057731:intron |
TGTTTATTATAGTGTTATTA+CGG | 0.346622 | 4.4:+36054324 | MS.gene057731:intron |
TTAGTTACCTGGTGAATATA+AGG | 0.349106 | 4.4:-36049088 | None:intergenic |
TTGAAGTTGATGTTACAATA+AGG | 0.349695 | 4.4:-36052898 | None:intergenic |
TTCTCCAATGTTCCAGAAAC+AGG | 0.351523 | 4.4:+36042351 | MS.gene057731:CDS |
AAAGATGCCCAGTCTGGTTC+AGG | 0.351894 | 4.4:-36051112 | None:intergenic |
GTTGAGTTGTTGCTCCAATT+TGG | 0.352804 | 4.4:+36053088 | MS.gene057731:CDS |
TATCTCCTCAGGACAGCTAT+AGG | 0.355481 | 4.4:+36044488 | MS.gene057731:intron |
GACTGGGTAAACAAAATTAC+TGG | 0.355801 | 4.4:+36050780 | MS.gene057731:CDS |
ATTATTGAATAACTCCAAAA+TGG | 0.359563 | 4.4:-36051634 | None:intergenic |
AGTATTCCTACCGCGGGTTT+GGG | 0.363976 | 4.4:-36050207 | None:intergenic |
AACATTAGATGTGAAGGTTT+GGG | 0.367326 | 4.4:+36051605 | MS.gene057731:CDS |
TAACATTAGATGTGAAGGTT+TGG | 0.369093 | 4.4:+36051604 | MS.gene057731:CDS |
GAACAAAATAGTGGCATGTT+TGG | 0.370329 | 4.4:+36050325 | MS.gene057731:CDS |
CCAATTACTTGCCTCGCCTT+TGG | 0.383476 | 4.4:-36049951 | None:intergenic |
TAGAAATAAGTGTTTGTTTG+AGG | 0.388883 | 4.4:+36054726 | MS.gene057731:CDS |
AGCCTCTTTAATCCTCAAAC+AGG | 0.392863 | 4.4:-36052993 | None:intergenic |
TTTCGGGTATATCCTCTTCC+CGG | 0.398868 | 4.4:-36052811 | None:intergenic |
AGCAAGATAAGCTTGCAAAA+AGG | 0.399844 | 4.4:+36049786 | MS.gene057731:CDS |
GCTATAGGGGAAGCATATAA+TGG | 0.401537 | 4.4:+36044503 | MS.gene057731:CDS |
AGAGACACTACCCGCTTCTT+CGG | 0.403499 | 4.4:-36051038 | None:intergenic |
CATCAAGGATGCGAGGAGAT+TGG | 0.414926 | 4.4:+36050124 | MS.gene057731:CDS |
ATTGTAGCGAGATTATTCTT+TGG | 0.417787 | 4.4:+36054689 | MS.gene057731:CDS |
CAGAAAGTTGTTTCCGTGGT+TGG | 0.427831 | 4.4:+36053023 | MS.gene057731:CDS |
GGATAGTAATAAATCTTTGA+TGG | 0.429663 | 4.4:+36051003 | MS.gene057731:CDS |
CCTCCAATCGATACACTAAC+AGG | 0.431302 | 4.4:-36044578 | None:intergenic |
TCCGGAGTGCATCGCAATCT+TGG | 0.439650 | 4.4:+36051166 | MS.gene057731:CDS |
CCATCTGAGATACTTTAAAC+TGG | 0.439955 | 4.4:+36048952 | MS.gene057731:CDS |
ATGATCCTGAAGCCTGTTTG+AGG | 0.443167 | 4.4:+36052981 | MS.gene057731:CDS |
TAGAGAAATCACTAGTCATC+CGG | 0.447952 | 4.4:+36052792 | MS.gene057731:CDS |
TAGTGTTATTACGGATATTG+TGG | 0.448314 | 4.4:+36054333 | MS.gene057731:intron |
GCAGTGCTCCTGAACCAGAC+TGG | 0.452884 | 4.4:+36051104 | MS.gene057731:CDS |
ATCTGTGCATTCTTATGATC+AGG | 0.455771 | 4.4:+36046474 | MS.gene057731:CDS |
TGAAAATGCTTACCTTCGCT+TGG | 0.457999 | 4.4:-36051904 | None:intergenic |
TATTCGAAACTTCTATTGAC+AGG | 0.460987 | 4.4:+36054657 | MS.gene057731:CDS |
TGTATAGGTAGAGCATGTAT+TGG | 0.462481 | 4.4:+36046242 | MS.gene057731:intron |
TTATATTATTACAGATCAAA+AGG | 0.462710 | 4.4:+36050183 | MS.gene057731:CDS |
AGGTTTAAAGATGCCCAGTC+TGG | 0.465472 | 4.4:-36051118 | None:intergenic |
GGAACCTGTTTCTGGAACAT+TGG | 0.467030 | 4.4:-36042355 | None:intergenic |
TGTTTGGTAGATTCCGTTCA+AGG | 0.468960 | 4.4:+36050341 | MS.gene057731:CDS |
ATCATCAAGCTTCACGAAAG+AGG | 0.474451 | 4.4:-36042329 | None:intergenic |
TGGTTGGTCTATATTACATC+TGG | 0.475078 | 4.4:+36053039 | MS.gene057731:CDS |
CCTTACAAAAGCTTTGAAGC+AGG | 0.478464 | 4.4:+36049914 | MS.gene057731:CDS |
AGGATCATGCTGATCTCCTT+CGG | 0.479476 | 4.4:-36052966 | None:intergenic |
ATCTCCTTCGGTATCATCAT+GGG | 0.480413 | 4.4:-36052954 | None:intergenic |
TAAAGAGCTTCTTCGCTCAC+AGG | 0.485694 | 4.4:+36045079 | MS.gene057731:CDS |
ATACAGAACACAGGCAGAGC+TGG | 0.488200 | 4.4:+36049817 | MS.gene057731:CDS |
AGGCTGAAAACGAAGCTGAT+AGG | 0.490205 | 4.4:+36050754 | MS.gene057731:intron |
AACAATTATTTGCAGTGCAA+GGG | 0.490475 | 4.4:+36051820 | MS.gene057731:intron |
CATAAAGCCAATTCACCAAA+AGG | 0.491722 | 4.4:+36054375 | MS.gene057731:CDS |
GATCTCCTTCGGTATCATCA+TGG | 0.492164 | 4.4:-36052955 | None:intergenic |
ATATAATTATAGTCGTTCTT+CGG | 0.492178 | 4.4:+36050303 | MS.gene057731:CDS |
ATTCCGTTCAAGGCATAATA+GGG | 0.496660 | 4.4:+36050351 | MS.gene057731:CDS |
GGTGAATATAAGGCTCCATT+TGG | 0.498660 | 4.4:-36049078 | None:intergenic |
ATCTATAACATTAGATGTGA+AGG | 0.499638 | 4.4:+36051599 | MS.gene057731:CDS |
AATTCAGCAACAATATCTTC+CGG | 0.500213 | 4.4:-36047356 | None:intergenic |
TATTGTAATTCTATTTGGGA+GGG | 0.502577 | 4.4:+36051669 | MS.gene057731:CDS |
CATTTATAAACTCTGTCAAC+CGG | 0.503947 | 4.4:-36046269 | None:intergenic |
CCTGTTAGTGTATCGATTGG+AGG | 0.508928 | 4.4:+36044578 | MS.gene057731:CDS |
ACGAAGCTGATAGGATGGAC+TGG | 0.511664 | 4.4:+36050763 | MS.gene057731:CDS |
GACTGGGCATCTTTAAACCT+TGG | 0.512691 | 4.4:+36051121 | MS.gene057731:CDS |
ATACGACTTACTGAGCCAAA+TGG | 0.517252 | 4.4:+36049063 | MS.gene057731:CDS |
GTGGATGTGCACAGATCGAC+TGG | 0.517433 | 4.4:-36050409 | None:intergenic |
TTGAATAACTCCAAAATGGT+AGG | 0.518071 | 4.4:-36051630 | None:intergenic |
TGCGAGGAGATTGGAAAAGG+AGG | 0.519980 | 4.4:+36050133 | MS.gene057731:CDS |
TAGAGCATGTATTGGTTGAC+CGG | 0.520417 | 4.4:+36046250 | MS.gene057731:CDS |
CCGTCAGTTAAAGATGCTGC+TGG | 0.520835 | 4.4:+36053995 | MS.gene057731:CDS |
CTCTGCATCCATCTTTATGG+TGG | 0.521582 | 4.4:-36050428 | None:intergenic |
CTACTAATGACGCATATAAG+TGG | 0.522684 | 4.4:+36054633 | MS.gene057731:CDS |
TCATTAGAAGCATTTGGAGG+TGG | 0.523290 | 4.4:+36044545 | MS.gene057731:CDS |
CAGTGCTCCTGAACCAGACT+GGG | 0.523590 | 4.4:+36051105 | MS.gene057731:CDS |
CTTCTCGTACGTTTATAGCC+TGG | 0.525427 | 4.4:-36052868 | None:intergenic |
GTGCACATCCACCATAAAGA+TGG | 0.528945 | 4.4:+36050420 | MS.gene057731:CDS |
TTCTTTGACAAGTCAACAAG+AGG | 0.530975 | 4.4:+36050982 | MS.gene057731:CDS |
ATAAACATGTGTGACTATCA+TGG | 0.532084 | 4.4:+36053118 | MS.gene057731:CDS |
ATCACTAGTCATCCGGGAAG+AGG | 0.532106 | 4.4:+36052799 | MS.gene057731:CDS |
CGAAGCTGATAGGATGGACT+GGG | 0.533022 | 4.4:+36050764 | MS.gene057731:CDS |
CGTTCTTCGGAACAAAATAG+TGG | 0.534792 | 4.4:+36050316 | MS.gene057731:CDS |
GGATGCGAGGAGATTGGAAA+AGG | 0.543094 | 4.4:+36050130 | MS.gene057731:CDS |
AGGTTTCAAACCTGAAGGAC+GGG | 0.547280 | 4.4:-36049894 | None:intergenic |
TTATTGTAATTCTATTTGGG+AGG | 0.549054 | 4.4:+36051668 | MS.gene057731:CDS |
CGGTGTCAGAATCTATTCAA+AGG | 0.549863 | 4.4:+36043752 | MS.gene057731:CDS |
TTGTAAGGTTTCAAACCTGA+AGG | 0.549880 | 4.4:-36049899 | None:intergenic |
TGTTGATTTGCAAGATGCCA+AGG | 0.551744 | 4.4:+36046290 | MS.gene057731:CDS |
GAACCTATGCTAGGTGCTGA+TGG | 0.554421 | 4.4:+36049869 | MS.gene057731:CDS |
CTGCCCTATTATGCCTTGAA+CGG | 0.557204 | 4.4:-36050354 | None:intergenic |
TCTCCTCAGGACAGCTATAG+GGG | 0.557373 | 4.4:+36044490 | MS.gene057731:intron |
CCAGTTTAAAGTATCTCAGA+TGG | 0.557420 | 4.4:-36048952 | None:intergenic |
TGCTTCTACATCGTGATGAA+AGG | 0.558717 | 4.4:+36051694 | MS.gene057731:CDS |
GTGATAAACTTGGATATGAC+GGG | 0.558972 | 4.4:-36045032 | None:intergenic |
CTGGAAATGCAGTGGTGCAA+TGG | 0.560564 | 4.4:-36053148 | None:intergenic |
CCAGCAGCATCTTTAACTGA+CGG | 0.564531 | 4.4:-36053995 | None:intergenic |
TCCAAGATTGCGATGCACTC+CGG | 0.564657 | 4.4:-36051167 | None:intergenic |
TATTGTTGCTGAATTAGAAG+AGG | 0.565780 | 4.4:+36047364 | MS.gene057731:CDS |
ACGTAGTGCAGTGATAAACT+TGG | 0.565903 | 4.4:-36045042 | None:intergenic |
AAATGCAATTTACCATAATG+TGG | 0.565985 | 4.4:-36050935 | None:intergenic |
ATCTGTTAAAACGATCATCA+AGG | 0.567007 | 4.4:+36050109 | MS.gene057731:CDS |
TAGGGCAGTGTCACTAAATG+AGG | 0.567074 | 4.4:+36050369 | MS.gene057731:CDS |
GAAACAGAAAGTTGTTTCCG+TGG | 0.567443 | 4.4:+36053019 | MS.gene057731:CDS |
GATTCATTAGAAGCATTTGG+AGG | 0.570143 | 4.4:+36044542 | MS.gene057731:CDS |
GGTGTCAGAATCTATTCAAA+GGG | 0.571336 | 4.4:+36043753 | MS.gene057731:CDS |
AGTTATTGCTCCCATCTCCA+TGG | 0.571340 | 4.4:-36054038 | None:intergenic |
CACCATAAAGATGGATGCAG+AGG | 0.577911 | 4.4:+36050429 | MS.gene057731:CDS |
TACTGTGCTTGAAAGAGCCA+TGG | 0.578067 | 4.4:+36054021 | MS.gene057731:CDS |
TCAGCACACTTATCATTCCC+AGG | 0.578263 | 4.4:-36051079 | None:intergenic |
TGTAATAATATAAACTCCCA+TGG | 0.580809 | 4.4:-36050173 | None:intergenic |
AGAGAAATCACTAGTCATCC+GGG | 0.582473 | 4.4:+36052793 | MS.gene057731:CDS |
CTTGAAAGAGCCATGGAGAT+GGG | 0.583262 | 4.4:+36054028 | MS.gene057731:CDS |
CTTACAAAAGCTTTGAAGCA+GGG | 0.584053 | 4.4:+36049915 | MS.gene057731:CDS |
AGTGATAAACTTGGATATGA+CGG | 0.590791 | 4.4:-36045033 | None:intergenic |
TGCACCACTGCATTTCCAGT+GGG | 0.592100 | 4.4:+36053152 | MS.gene057731:CDS |
TCTGTGAAGCATGGTTTCGA+AGG | 0.593162 | 4.4:-36051854 | None:intergenic |
GATCCTGTTAGTGTATCGAT+TGG | 0.593171 | 4.4:+36044575 | MS.gene057731:CDS |
AAACACGAAATATGAAGATG+TGG | 0.600151 | 4.4:+36052928 | MS.gene057731:CDS |
TGGGAGGGATCTGTGAAGCA+TGG | 0.602428 | 4.4:-36051863 | None:intergenic |
GCTTGAAAGAGCCATGGAGA+TGG | 0.603752 | 4.4:+36054027 | MS.gene057731:CDS |
AAGGTTTCAAACCTGAAGGA+CGG | 0.605973 | 4.4:-36049895 | None:intergenic |
GAGCCATCAGCACCTAGCAT+AGG | 0.606773 | 4.4:-36049872 | None:intergenic |
GGGATGCAGTCTGCAACCAA+AGG | 0.607648 | 4.4:+36049935 | MS.gene057731:CDS |
TGCTTCTAATGAATCAGCAA+AGG | 0.614038 | 4.4:-36044534 | None:intergenic |
TAGATTCAAACAGTTAAACA+AGG | 0.615988 | 4.4:+36050084 | MS.gene057731:intron |
CTGTTGTGTATTGAATGCTC+CGG | 0.617714 | 4.4:+36051148 | MS.gene057731:CDS |
TTGCACCACTGCATTTCCAG+TGG | 0.618119 | 4.4:+36053151 | MS.gene057731:CDS |
AGCCTGTTTGAGGATTAAAG+AGG | 0.619620 | 4.4:+36052991 | MS.gene057731:CDS |
CAGTTTAAAGTATCTCAGAT+GGG | 0.621267 | 4.4:-36048951 | None:intergenic |
CTTACTGGCATTCAACAAGC+AGG | 0.623146 | 4.4:-36054078 | None:intergenic |
AGAAAAGTACATCCAAGCGA+AGG | 0.625858 | 4.4:+36051892 | MS.gene057731:CDS |
GAAACTTCTATTGACAGGCA+TGG | 0.630601 | 4.4:+36054662 | MS.gene057731:CDS |
TGAAAACGAAGCTGATAGGA+TGG | 0.630928 | 4.4:+36050758 | MS.gene057731:CDS |
TCTTGGAGTTCATATCTCAA+AGG | 0.632215 | 4.4:+36051183 | MS.gene057731:CDS |
ATGCAGAGGATACAGATCTA+CGG | 0.634035 | 4.4:+36050443 | MS.gene057731:CDS |
ACATGTGTGACTATCATGGA+AGG | 0.641582 | 4.4:+36053122 | MS.gene057731:CDS |
AATGGAGCCTTATATTCACC+AGG | 0.651706 | 4.4:+36049081 | MS.gene057731:CDS |
GTTCCCCATGATGATACCGA+AGG | 0.653048 | 4.4:+36052950 | MS.gene057731:CDS |
TCTCCTTCGGTATCATCATG+GGG | 0.654258 | 4.4:-36052953 | None:intergenic |
GCAGTCTGCAACCAAAGGCG+AGG | 0.654904 | 4.4:+36049940 | MS.gene057731:CDS |
AAATACATACTAGATTGAAG+CGG | 0.659466 | 4.4:-36048773 | None:intergenic |
AGCAATACTGAACCTATGCT+AGG | 0.663682 | 4.4:+36049860 | MS.gene057731:CDS |
AAACGATCATCAAGGATGCG+AGG | 0.666466 | 4.4:+36050117 | MS.gene057731:CDS |
TTCTTTGAAGAAGAATACAC+CGG | 0.667197 | 4.4:+36047337 | MS.gene057731:CDS |
CAGCTGATGAGTTAAAGGAT+CGG | 0.667853 | 4.4:+36043732 | MS.gene057731:CDS |
GATACAGGAATACAGAACAC+AGG | 0.675526 | 4.4:+36049808 | MS.gene057731:CDS |
ATACACTAACAGGATCGTCA+TGG | 0.679277 | 4.4:-36044568 | None:intergenic |
CAATACACAACAGTATACCA+AGG | 0.684352 | 4.4:-36051138 | None:intergenic |
ATCAAAAGGACCCAAACCCG+CGG | 0.686528 | 4.4:+36050197 | MS.gene057731:CDS |
GATGTAATATAGACCAACCA+CGG | 0.697038 | 4.4:-36053036 | None:intergenic |
GCACAGATTTGTCAAAACGA+CGG | 0.721276 | 4.4:-36046459 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 36042322 | 36054754 | 36042322 | ID=MS.gene057731 |
chr4.4 | mRNA | 36042322 | 36054754 | 36042322 | ID=MS.gene057731.t1;Parent=MS.gene057731 |
chr4.4 | exon | 36042322 | 36042372 | 36042322 | ID=MS.gene057731.t1.exon1;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36042322 | 36042372 | 36042322 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36043713 | 36043789 | 36043713 | ID=MS.gene057731.t1.exon2;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36043713 | 36043789 | 36043713 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36044499 | 36044599 | 36044499 | ID=MS.gene057731.t1.exon3;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36044499 | 36044599 | 36044499 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36045030 | 36045100 | 36045030 | ID=MS.gene057731.t1.exon4;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36045030 | 36045100 | 36045030 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36046249 | 36046311 | 36046249 | ID=MS.gene057731.t1.exon5;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36046249 | 36046311 | 36046249 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36046451 | 36046495 | 36046451 | ID=MS.gene057731.t1.exon6;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36046451 | 36046495 | 36046451 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36047320 | 36047385 | 36047320 | ID=MS.gene057731.t1.exon7;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36047320 | 36047385 | 36047320 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36048738 | 36048785 | 36048738 | ID=MS.gene057731.t1.exon8;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36048738 | 36048785 | 36048738 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36048878 | 36048973 | 36048878 | ID=MS.gene057731.t1.exon9;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36048878 | 36048973 | 36048878 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36049061 | 36049102 | 36049061 | ID=MS.gene057731.t1.exon10;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36049061 | 36049102 | 36049061 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36049743 | 36049961 | 36049743 | ID=MS.gene057731.t1.exon11;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36049743 | 36049961 | 36049743 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36050087 | 36050218 | 36050087 | ID=MS.gene057731.t1.exon12;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36050087 | 36050218 | 36050087 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36050292 | 36050510 | 36050292 | ID=MS.gene057731.t1.exon13;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36050292 | 36050510 | 36050292 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36050756 | 36050842 | 36050756 | ID=MS.gene057731.t1.exon14;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36050756 | 36050842 | 36050756 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36050935 | 36051204 | 36050935 | ID=MS.gene057731.t1.exon15;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36050935 | 36051204 | 36050935 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36051594 | 36051715 | 36051594 | ID=MS.gene057731.t1.exon16;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36051594 | 36051715 | 36051594 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36051835 | 36051913 | 36051835 | ID=MS.gene057731.t1.exon17;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36051835 | 36051913 | 36051835 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36052788 | 36053206 | 36052788 | ID=MS.gene057731.t1.exon18;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36052788 | 36053206 | 36052788 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36053985 | 36054095 | 36053985 | ID=MS.gene057731.t1.exon19;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36053985 | 36054095 | 36053985 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36054336 | 36054396 | 36054336 | ID=MS.gene057731.t1.exon20;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36054336 | 36054396 | 36054336 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
chr4.4 | exon | 36054602 | 36054754 | 36054602 | ID=MS.gene057731.t1.exon21;Parent=MS.gene057731.t1 |
chr4.4 | CDS | 36054602 | 36054754 | 36054602 | ID=cds.MS.gene057731.t1;Parent=MS.gene057731.t1 |
Gene Sequence |
Protein sequence |