Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28931.t1 | RHN61635.1 | 91 | 1360 | 122 | 0 | 1 | 1360 | 1 | 1360 | 1.10E-218 | 770.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28931.t1 | A0A396ID41 | 91.0 | 1360 | 122 | 0 | 1 | 1360 | 1 | 1360 | 7.7e-219 | 770.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28931 | MS.gene79182 | PPI |
| MS.gene09818 | MS.gene28931 | PPI |
| MS.gene28931 | MS.gene061924 | PPI |
| MS.gene28931 | MS.gene62509 | PPI |
| MS.gene28931 | MS.gene22490 | PPI |
| MS.gene28931 | MS.gene45415 | PPI |
| MS.gene74439 | MS.gene28931 | PPI |
| MS.gene52098 | MS.gene28931 | PPI |
| MS.gene24596 | MS.gene28931 | PPI |
| MS.gene018527 | MS.gene28931 | PPI |
| MS.gene28931 | MS.gene90953 | PPI |
| MS.gene057731 | MS.gene28931 | PPI |
| MS.gene040402 | MS.gene28931 | PPI |
| MS.gene28931 | MS.gene029842 | PPI |
| MS.gene28931 | MS.gene074085 | PPI |
| MS.gene28931 | MS.gene003500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28931.t1 | MTR_4g076030 | 91.477 | 1361 | 76 | 3 | 1 | 1360 | 1 | 1322 | 0.0 | 2237 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28931.t1 | AT2G32240 | 47.722 | 1383 | 650 | 13 | 1 | 1360 | 1 | 1333 | 0.0 | 902 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 33.135 | 842 | 338 | 17 | 529 | 1360 | 164 | 790 | 8.17e-75 | 266 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 3.96e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 30.835 | 707 | 274 | 13 | 529 | 1228 | 164 | 662 | 9.07e-49 | 186 |
| MS.gene28931.t1 | AT1G05320 | 27.907 | 731 | 314 | 19 | 599 | 1278 | 92 | 660 | 1.97e-24 | 110 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 4.20e-11 | 68.2 |
| MS.gene28931.t1 | AT1G05320 | 30.835 | 707 | 274 | 13 | 529 | 1228 | 164 | 662 | 9.07e-49 | 186 |
| MS.gene28931.t1 | AT1G05320 | 27.907 | 731 | 314 | 19 | 599 | 1278 | 92 | 660 | 1.97e-24 | 110 |
| MS.gene28931.t1 | AT1G05320 | 56.522 | 69 | 30 | 0 | 156 | 224 | 60 | 128 | 4.20e-11 | 68.2 |
Find 165 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCCTGCATCTTCTTTC+GGG | 0.114154 | 4.4:-34427637 | None:intergenic |
| CGTTAATGCAAAACACTTTA+AGG | 0.134026 | 4.4:+34428280 | MS.gene28931:CDS |
| CTCCAATTGTGAATTCTTCT+TGG | 0.153436 | 4.4:-34428783 | None:intergenic |
| GCTTGAGAAAATCAAGATTT+TGG | 0.154559 | 4.4:+34429528 | MS.gene28931:CDS |
| GACATTGTCAAGATGTTTAT+TGG | 0.168100 | 4.4:-34429044 | None:intergenic |
| TGACTCTAAATCACTCAATT+TGG | 0.208796 | 4.4:-34430205 | None:intergenic |
| CAGCTTCTCATTCAATTCTT+TGG | 0.225739 | 4.4:-34429959 | None:intergenic |
| ACCTTTGTCACTGGAACTTC+TGG | 0.227157 | 4.4:-34426573 | None:intergenic |
| GCAATTCCTGCATCTTCTTT+CGG | 0.233038 | 4.4:-34427638 | None:intergenic |
| CTTCCTTTGTAGAGACAAAT+AGG | 0.260048 | 4.4:-34428073 | None:intergenic |
| AATCTTTATCTGTCCTTCTA+AGG | 0.265446 | 4.4:-34429986 | None:intergenic |
| GTTCTTCTAGAGAATTCTTC+AGG | 0.272845 | 4.4:-34431191 | None:intergenic |
| AACTTCCAATAGCTGTGTTT+TGG | 0.291414 | 4.4:-34427940 | None:intergenic |
| TAGCTCTATTTCACTTTCAT+TGG | 0.293235 | 4.4:-34429137 | None:intergenic |
| CTCCTGAAGTTCATCAATCT+TGG | 0.299260 | 4.4:-34429743 | None:intergenic |
| TCGGCTGCGCTCATTGTTCA+TGG | 0.309471 | 4.4:-34428858 | None:intergenic |
| ATTATCTTCGGCATCATTCT+TGG | 0.315954 | 4.4:+34431645 | MS.gene28931:CDS |
| CTGTTCAAGCTCTGAATTGT+TGG | 0.317550 | 4.4:-34428387 | None:intergenic |
| GGAGTTGTGTAGTGATTTAG+AGG | 0.324329 | 4.4:+34428301 | MS.gene28931:CDS |
| TGAACAGAAGGTGAAGTCTT+TGG | 0.324411 | 4.4:+34428403 | MS.gene28931:CDS |
| AACCAAGATTGATGAACTTC+AGG | 0.355735 | 4.4:+34429741 | MS.gene28931:CDS |
| AGCAGTGGCTGCAACGGTTC+CGG | 0.357105 | 4.4:-34428444 | None:intergenic |
| TGAAGATAGTTTGAGCAAAC+TGG | 0.358673 | 4.4:+34429603 | MS.gene28931:CDS |
| AAAGAGAAATTAGAAGAAAC+TGG | 0.365005 | 4.4:+34427429 | MS.gene28931:CDS |
| CTGATTTGATATGAGAGCTC+TGG | 0.369639 | 4.4:-34428898 | None:intergenic |
| TTTGCAGGTTGGAAGTGTTC+AGG | 0.372826 | 4.4:+34430848 | MS.gene28931:intron |
| CATCCCTCACAATTTCCAAT+AGG | 0.377955 | 4.4:-34429249 | None:intergenic |
| ACTCTCCAAAACACAGCTAT+TGG | 0.381076 | 4.4:+34427935 | MS.gene28931:CDS |
| AACAGAGAAATACAGAATTC+AGG | 0.386994 | 4.4:+34428964 | MS.gene28931:CDS |
| TCAGAAAGATGAAAGCATTA+AGG | 0.387510 | 4.4:+34426611 | MS.gene28931:CDS |
| ATGAATTTCAAGTTCATCCT+TGG | 0.388092 | 4.4:+34431606 | MS.gene28931:CDS |
| TCTTCTTAATAGCCTATTGC+AGG | 0.390574 | 4.4:+34428712 | MS.gene28931:CDS |
| GCTCCTTCAACTTCTCTTCA+AGG | 0.391948 | 4.4:-34430568 | None:intergenic |
| TTCAAGGATGCGAGCTTCAT+TGG | 0.397888 | 4.4:-34429881 | None:intergenic |
| TATCCATGTGCTCCTGCAAT+AGG | 0.401274 | 4.4:-34428724 | None:intergenic |
| TTCATTGGCAGAATGAGTTT+CGG | 0.401937 | 4.4:-34429866 | None:intergenic |
| TGCTGATAAGAAAGATGCTT+TGG | 0.407101 | 4.4:+34431449 | MS.gene28931:CDS |
| TTTGCTTGAGATATTTCCTT+AGG | 0.410691 | 4.4:-34427171 | None:intergenic |
| TTCTCTGAAGGAAGAATTGA+AGG | 0.417486 | 4.4:+34427821 | MS.gene28931:CDS |
| TGCTGAGTCAGAAAACCTAT+TGG | 0.417564 | 4.4:+34429234 | MS.gene28931:CDS |
| ATCCAAGAAGAATTCACAAT+TGG | 0.425360 | 4.4:+34428781 | MS.gene28931:CDS |
| TAAGCAGAAAGAGCTTCTTC+AGG | 0.430704 | 4.4:+34427572 | MS.gene28931:CDS |
| GGATCAAATCTTCTAGTTCT+CGG | 0.433255 | 4.4:-34428877 | None:intergenic |
| CACGTCTCTCTCAGCATCAT+TGG | 0.434485 | 4.4:-34428624 | None:intergenic |
| CTTTCGCAGGTTTAATTCCT+CGG | 0.435688 | 4.4:-34428006 | None:intergenic |
| CTTCAGGTGAAGGAAGCGTT+TGG | 0.438245 | 4.4:+34427588 | MS.gene28931:CDS |
| GAGAAGCTGAATACCTTAGA+AGG | 0.440315 | 4.4:+34429973 | MS.gene28931:CDS |
| GAAGATCTTCATAGTGAATC+CGG | 0.442202 | 4.4:+34428425 | MS.gene28931:CDS |
| CGAAGTTACATTGAAGAGTC+AGG | 0.445795 | 4.4:+34428172 | MS.gene28931:CDS |
| GATAAAGATTTACGAAGAAC+AGG | 0.446009 | 4.4:+34429999 | MS.gene28931:CDS |
| AGGAGCAGAATCTCAGAAGT+TGG | 0.446189 | 4.4:+34431155 | MS.gene28931:CDS |
| TGACCTTGAAGAGAAGTTGA+AGG | 0.447342 | 4.4:+34430565 | MS.gene28931:CDS |
| TTGAAGAAAATCTTGCTGTA+AGG | 0.447582 | 4.4:+34429368 | MS.gene28931:CDS |
| CAAAGAAGTCTTGAGCTTGA+AGG | 0.448234 | 4.4:+34428470 | MS.gene28931:CDS |
| TTATCTTCGGCATCATTCTT+GGG | 0.450792 | 4.4:+34431646 | MS.gene28931:CDS |
| ATTTCTTGAAGCACAAGAAA+AGG | 0.451611 | 4.4:+34427311 | MS.gene28931:CDS |
| AGCTTCTTGGAGCTTCTGTT+CGG | 0.458835 | 4.4:-34429464 | None:intergenic |
| ATGAACTTGAAATTCATGAT+AGG | 0.461531 | 4.4:-34431600 | None:intergenic |
| AGGAAAATATCGCAGGAGCC+GGG | 0.462123 | 4.4:+34429551 | MS.gene28931:CDS |
| ATGCTTTGTCACCAAGTCTT+CGG | 0.464198 | 4.4:-34430295 | None:intergenic |
| TGAAGCACAAGAAAAGGTTC+AGG | 0.464668 | 4.4:+34427317 | MS.gene28931:CDS |
| GTGAAAATGAAGATTTGAAA+AGG | 0.466244 | 4.4:+34429638 | MS.gene28931:CDS |
| TGCTGAAGGAGTTGTCGCTT+CGG | 0.467033 | 4.4:-34431532 | None:intergenic |
| GCTCTTGTATCGATTATCTT+CGG | 0.469158 | 4.4:+34431633 | MS.gene28931:CDS |
| TGCAAAGGTCAAGCTGCAAA+TGG | 0.470134 | 4.4:+34428127 | MS.gene28931:CDS |
| AGAAATCTGCATTGCAAAGT+AGG | 0.472811 | 4.4:+34430651 | MS.gene28931:CDS |
| GAGGAAAATATCGCAGGAGC+CGG | 0.475802 | 4.4:+34429550 | MS.gene28931:CDS |
| TGTCACTGGAACTTCTGGAA+TGG | 0.476798 | 4.4:-34426568 | None:intergenic |
| CAAGAAGAATTCACAATTGG+AGG | 0.477966 | 4.4:+34428784 | MS.gene28931:CDS |
| GACCTTTGCACTTTCCAACT+CGG | 0.479242 | 4.4:-34428114 | None:intergenic |
| GAGCGTGAAACAGAAACTGC+TGG | 0.486300 | 4.4:+34430132 | MS.gene28931:CDS |
| TCTTCGACAACCTTTGTCAC+TGG | 0.486601 | 4.4:-34426582 | None:intergenic |
| TTCTTCTAGAGAATTCTTCA+GGG | 0.493169 | 4.4:-34431190 | None:intergenic |
| TGAAGAAAATCTTGCTGTAA+GGG | 0.499819 | 4.4:+34429369 | MS.gene28931:CDS |
| AAAGAATGCTGCCGAAGACT+TGG | 0.501472 | 4.4:+34430284 | MS.gene28931:CDS |
| TACAAATGCAGCTGCAGAAG+AGG | 0.503485 | 4.4:+34428505 | MS.gene28931:CDS |
| CGCTAAATTGAAAGAGGCTG+AGG | 0.504259 | 4.4:+34428679 | MS.gene28931:CDS |
| TGCATTGCAAAGTAGGCTGC+AGG | 0.508198 | 4.4:+34430658 | MS.gene28931:CDS |
| CTCTGCTGCACTTGTCGAGA+AGG | 0.509330 | 4.4:+34430233 | MS.gene28931:CDS |
| CCTTGAAAATACACTGCAAA+CGG | 0.519186 | 4.4:+34429114 | MS.gene28931:CDS |
| TAAGATTGCTGAAAATCAAA+AGG | 0.520332 | 4.4:+34427854 | MS.gene28931:CDS |
| ACTCGAGGTTGAACTGAAAA+CGG | 0.522297 | 4.4:+34427341 | MS.gene28931:CDS |
| GCATCTCATCTCCATCGAAA+AGG | 0.522651 | 4.4:+34431493 | MS.gene28931:CDS |
| TCTGAGAATGAATTACTGGT+TGG | 0.524968 | 4.4:+34429700 | MS.gene28931:CDS |
| CGAGAAGGAAGAGAATGTGT+TGG | 0.526731 | 4.4:+34427239 | MS.gene28931:CDS |
| TATCAACACGCAGATATCTT+CGG | 0.530628 | 4.4:+34430472 | MS.gene28931:intron |
| ATCTCAGAAGTTGGAACTAG+AGG | 0.533512 | 4.4:+34431164 | MS.gene28931:CDS |
| CAATTCAGAGCTTGAACAGA+AGG | 0.537146 | 4.4:+34428391 | MS.gene28931:CDS |
| ATTAAACCTGCGAAAGACTT+CGG | 0.538292 | 4.4:+34428013 | MS.gene28931:CDS |
| AGAAGAGGCACGGAAGTTCG+AGG | 0.538325 | 4.4:+34427683 | MS.gene28931:CDS |
| GCTTCAAGAAATTCTCTGCT+AGG | 0.538939 | 4.4:-34427300 | None:intergenic |
| AAATGCAGACTTGCTGCCTA+AGG | 0.539681 | 4.4:+34427155 | MS.gene28931:CDS |
| TGAAGAATCTTTGAAATCTG+AGG | 0.541805 | 4.4:+34430601 | MS.gene28931:CDS |
| TGAAACTCGTAAAGCTGAGC+TGG | 0.545288 | 4.4:+34430044 | MS.gene28931:CDS |
| AGATGAGATGGCTTCTCTGA+AGG | 0.546613 | 4.4:+34427809 | MS.gene28931:CDS |
| TCTCGACGCTAAATTGAAAG+AGG | 0.548418 | 4.4:+34428673 | MS.gene28931:CDS |
| TTGACTAGCAGTGGCTGCAA+CGG | 0.548735 | 4.4:-34428450 | None:intergenic |
| CATGATAGGCGAATCATGGC+CGG | 0.549925 | 4.4:-34431586 | None:intergenic |
| GGTGGCTCGATCTTCATGCT+CGG | 0.550471 | 4.4:-34428837 | None:intergenic |
| AATTCATGATAGGCGAATCA+TGG | 0.551384 | 4.4:-34431590 | None:intergenic |
| ACATGAAAACTCTCAGCTGA+AGG | 0.555752 | 4.4:+34427389 | MS.gene28931:CDS |
| TAGCCTATTGCAGGAGCACA+TGG | 0.556000 | 4.4:+34428721 | MS.gene28931:CDS |
| GTGTTTCCGAAGTCTTTCGC+AGG | 0.559992 | 4.4:-34428019 | None:intergenic |
| AGAATCTTTAAATGCTGTGA+CGG | 0.560483 | 4.4:+34429162 | MS.gene28931:CDS |
| TTTAATGAATTCTCCATCTG+AGG | 0.560486 | 4.4:-34427214 | None:intergenic |
| TGCTGAATCTGAGGGAAACA+AGG | 0.561032 | 4.4:+34427731 | MS.gene28931:CDS |
| GAAAGAGCTTCTTCAGGTGA+AGG | 0.561755 | 4.4:+34427578 | MS.gene28931:CDS |
| GACTAATCAGAATCTAAAGA+AGG | 0.563008 | 4.4:+34430523 | MS.gene28931:CDS |
| AGAACTTTCTACTATTCAAG+AGG | 0.563186 | 4.4:+34427905 | MS.gene28931:CDS |
| TGGTTCACATGCTGAATCTG+AGG | 0.565365 | 4.4:+34427722 | MS.gene28931:CDS |
| AGAAACTGCTGGAATAAATG+AGG | 0.568461 | 4.4:+34430143 | MS.gene28931:CDS |
| GCAGCTCAGCACTCTTGAAG+AGG | 0.568901 | 4.4:+34427530 | MS.gene28931:CDS |
| AATAAATGTGCTGAATGAAA+AGG | 0.569294 | 4.4:+34430938 | MS.gene28931:CDS |
| GCCGGCTTGAATATGAGTCT+CGG | 0.570313 | 4.4:-34431568 | None:intergenic |
| TCCGAGACTCATATTCAAGC+CGG | 0.571427 | 4.4:+34431567 | MS.gene28931:CDS |
| GGAAAATATCGCAGGAGCCG+GGG | 0.572012 | 4.4:+34429552 | MS.gene28931:CDS |
| TCCAGAAGTTCCAGTGACAA+AGG | 0.573505 | 4.4:+34426572 | MS.gene28931:CDS |
| TTCCGAGTTGGAAAGTGCAA+AGG | 0.574527 | 4.4:+34428112 | MS.gene28931:CDS |
| CGAAAAGAGAGTGAGTGAGT+TGG | 0.577125 | 4.4:+34428928 | MS.gene28931:CDS |
| TGAATCTAGACTACATGAAG+AGG | 0.577959 | 4.4:+34430706 | MS.gene28931:CDS |
| AAACCTATTTGTCTCTACAA+AGG | 0.578347 | 4.4:+34428070 | MS.gene28931:CDS |
| GAGGAAGATAATGCCTCAGA+TGG | 0.578707 | 4.4:+34427201 | MS.gene28931:CDS |
| AAGACTTCTTTGACTAGCAG+TGG | 0.580395 | 4.4:-34428459 | None:intergenic |
| GAAATTGAGTGCGAAAAGCA+TGG | 0.585105 | 4.4:+34427785 | MS.gene28931:CDS |
| AGTGCAGACATTGAAGTCAC+AGG | 0.585831 | 4.4:+34430326 | MS.gene28931:CDS |
| CATGAAAACTCTCAGCTGAA+GGG | 0.588485 | 4.4:+34427390 | MS.gene28931:CDS |
| AAAACCTATTGGAAATTGTG+AGG | 0.589441 | 4.4:+34429245 | MS.gene28931:CDS |
| GAACAGTGTTCTGTCAGAGA+AGG | 0.595509 | 4.4:+34429771 | MS.gene28931:CDS |
| TGATGAGAAAATCTCAGTCA+AGG | 0.597191 | 4.4:+34431287 | MS.gene28931:CDS |
| GAAGAATTCACAATTGGAGG+AGG | 0.597266 | 4.4:+34428787 | MS.gene28931:CDS |
| AATGATGTTGCAGGGTGAGG+AGG | 0.597607 | 4.4:+34431425 | MS.gene28931:intron |
| AGAATTCATTAAAGTCGAGA+AGG | 0.598167 | 4.4:+34427224 | MS.gene28931:CDS |
| AAACCTATTGGAAATTGTGA+GGG | 0.599739 | 4.4:+34429246 | MS.gene28931:CDS |
| GAAAAGCATGGAAGATGAGA+TGG | 0.600212 | 4.4:+34427797 | MS.gene28931:CDS |
| GCTGCAACTTTCTACAGAAG+AGG | 0.602865 | 4.4:+34427668 | MS.gene28931:CDS |
| GACAAAGGTTGTCGAAGAGG+TGG | 0.604844 | 4.4:+34426587 | MS.gene28931:CDS |
| GCATCTTGAAGCAGTAGTTG+AGG | 0.605915 | 4.4:+34430089 | MS.gene28931:CDS |
| AAGCTCCCGAAAGAAGATGC+AGG | 0.607019 | 4.4:+34427632 | MS.gene28931:CDS |
| ATTGGCAGAATGAGTTTCGG+AGG | 0.607463 | 4.4:-34429863 | None:intergenic |
| ATATAGAGCTTACTTCTGCA+AGG | 0.608300 | 4.4:+34429398 | MS.gene28931:CDS |
| GGATGATTTAAATCTTACAC+AGG | 0.610338 | 4.4:+34429267 | MS.gene28931:CDS |
| ACTCAATTTGGACTCATAGA+CGG | 0.610740 | 4.4:-34430193 | None:intergenic |
| ATGATGTTGCAGGGTGAGGA+GGG | 0.615465 | 4.4:+34431426 | MS.gene28931:intron |
| GATGAAGAAGTTGATGCTGA+AGG | 0.615729 | 4.4:-34431546 | None:intergenic |
| ATTAACGGTTAGATCTTCAA+CGG | 0.617286 | 4.4:-34428264 | None:intergenic |
| ACAGACTACTATAGCTAACC+AGG | 0.618050 | 4.4:+34430992 | MS.gene28931:CDS |
| AGTGACAAAGGTTGTCGAAG+AGG | 0.618117 | 4.4:+34426584 | MS.gene28931:CDS |
| GGTTCACATGCTGAATCTGA+GGG | 0.619554 | 4.4:+34427723 | MS.gene28931:CDS |
| GAAGAAAATCTTGCTGTAAG+GGG | 0.624970 | 4.4:+34429370 | MS.gene28931:CDS |
| AGCGGCAGAGCAAAAGAATG+TGG | 0.626530 | 4.4:+34428565 | MS.gene28931:CDS |
| TCAAGAAATTCTCTGCTAGG+AGG | 0.630636 | 4.4:-34427297 | None:intergenic |
| ATTGCAGAAGCATACTGAGA+AGG | 0.631122 | 4.4:+34429927 | MS.gene28931:CDS |
| CAAAGATATAGACTGTTCCC+CGG | 0.633474 | 4.4:-34429569 | None:intergenic |
| AACTTTCTACAGAAGAGGCA+CGG | 0.647127 | 4.4:+34427673 | MS.gene28931:CDS |
| AAAGGTCAAGCTGCAAATGG+AGG | 0.650695 | 4.4:+34428130 | MS.gene28931:CDS |
| TCGATACAAGAGCTACTCCA+AGG | 0.657381 | 4.4:-34431623 | None:intergenic |
| AGAAAAGGTTCAGGAACTCG+AGG | 0.663782 | 4.4:+34427326 | MS.gene28931:CDS |
| GCTGCGCTCATTGTTCATGG+TGG | 0.678043 | 4.4:-34428855 | None:intergenic |
| TCTCTGAAGGAAGAATTGAA+GGG | 0.679949 | 4.4:+34427822 | MS.gene28931:CDS |
| AAATGTGCTGAATGAAAAGG+TGG | 0.682430 | 4.4:+34430941 | MS.gene28931:CDS |
| GAGGAGCTGCATAAGCAAAG+TGG | 0.685020 | 4.4:+34427702 | MS.gene28931:CDS |
| ATCTCAAGCAAAGAAAGACG+AGG | 0.694382 | 4.4:+34427182 | MS.gene28931:CDS |
| TCTAGTAGACGAGTTGACCG+AGG | 0.705814 | 4.4:+34427989 | MS.gene28931:CDS |
| GCTTGAAACACGCTTCATAG+CGG | 0.723520 | 4.4:+34428547 | MS.gene28931:CDS |
| TGAATCTGAGGGAAACAAGG+CGG | 0.749133 | 4.4:+34427734 | MS.gene28931:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGAAAAATAAAGGAATAT+CGG | - | chr4.4:34430360-34430379 | None:intergenic | 20.0% |
| !! | TTTCTTAAAAAAAAGCAGAA+AGG | + | chr4.4:34431135-34431154 | MS.gene28931:intron | 20.0% |
| !!! | ATTGTTTTATGATTTATTGC+AGG | + | chr4.4:34427128-34427147 | MS.gene28931:intron | 20.0% |
| !!! | TGATCATTTTGTATAAACTA+TGG | + | chr4.4:34430420-34430439 | MS.gene28931:intron | 20.0% |
| ! | AAAGAGAAATTAGAAGAAAC+TGG | + | chr4.4:34427429-34427448 | MS.gene28931:CDS | 25.0% |
| ! | AATAAATGTGCTGAATGAAA+AGG | + | chr4.4:34430938-34430957 | MS.gene28931:CDS | 25.0% |
| ! | AGTTGTATTGAGATTATTAG+CGG | + | chr4.4:34426919-34426938 | MS.gene28931:intron | 25.0% |
| ! | ATGAACTTGAAATTCATGAT+AGG | - | chr4.4:34431603-34431622 | None:intergenic | 25.0% |
| ! | GAAGTAGAAAGGAAAAATAA+AGG | - | chr4.4:34430368-34430387 | None:intergenic | 25.0% |
| ! | GTGAAAATGAAGATTTGAAA+AGG | + | chr4.4:34429638-34429657 | MS.gene28931:CDS | 25.0% |
| ! | TAAGATTGCTGAAAATCAAA+AGG | + | chr4.4:34427854-34427873 | MS.gene28931:CDS | 25.0% |
| ! | TTAAGCATAAGCAAAATGAA+TGG | + | chr4.4:34427072-34427091 | MS.gene28931:intron | 25.0% |
| ! | TTACAAAATTATCCGAGATT+TGG | - | chr4.4:34431320-34431339 | None:intergenic | 25.0% |
| !! | AAGTTATTTCACTTCTGAAT+TGG | - | chr4.4:34430768-34430787 | None:intergenic | 25.0% |
| !! | TAATTTTCTCTATAGCTTCT+TGG | - | chr4.4:34429480-34429499 | None:intergenic | 25.0% |
| !! | TTAATGATTGCGTAAGTTTT+TGG | + | chr4.4:34426755-34426774 | MS.gene28931:intron | 25.0% |
| !!! | ATTTTCTGAGAATGAATTAC+TGG | + | chr4.4:34429696-34429715 | MS.gene28931:CDS | 25.0% |
| !!! | CACTTAAAACAGTATTGATT+AGG | + | chr4.4:34426990-34427009 | MS.gene28931:intron | 25.0% |
| !!! | CTTAAAGTGTTTTGCATTAA+CGG | - | chr4.4:34428282-34428301 | None:intergenic | 25.0% |
| !!! | GCAATTTTGATTCTATTTCA+AGG | - | chr4.4:34429900-34429919 | None:intergenic | 25.0% |
| AAAACCTATTGGAAATTGTG+AGG | + | chr4.4:34429245-34429264 | MS.gene28931:CDS | 30.0% | |
| AAACCTATTGGAAATTGTGA+GGG | + | chr4.4:34429246-34429265 | MS.gene28931:CDS | 30.0% | |
| AAACCTATTTGTCTCTACAA+AGG | + | chr4.4:34428070-34428089 | MS.gene28931:CDS | 30.0% | |
| AACAGAGAAATACAGAATTC+AGG | + | chr4.4:34428964-34428983 | MS.gene28931:CDS | 30.0% | |
| AACTAGCAATAGAAGTAGAA+AGG | - | chr4.4:34430379-34430398 | None:intergenic | 30.0% | |
| AAGCTTAATGCAGAGAAAAA+AGG | + | chr4.4:34428230-34428249 | MS.gene28931:CDS | 30.0% | |
| AATCTTTATCTGTCCTTCTA+AGG | - | chr4.4:34429989-34430008 | None:intergenic | 30.0% | |
| AGAACTTTCTACTATTCAAG+AGG | + | chr4.4:34427905-34427924 | MS.gene28931:CDS | 30.0% | |
| AGAATCTTTAAATGCTGTGA+CGG | + | chr4.4:34429162-34429181 | MS.gene28931:CDS | 30.0% | |
| AGAATTCATTAAAGTCGAGA+AGG | + | chr4.4:34427224-34427243 | MS.gene28931:CDS | 30.0% | |
| AGAGGAAAAACTAAAGCTTT+CGG | + | chr4.4:34428319-34428338 | MS.gene28931:CDS | 30.0% | |
| ATCCAAGAAGAATTCACAAT+TGG | + | chr4.4:34428781-34428800 | MS.gene28931:CDS | 30.0% | |
| ATTAACGGTTAGATCTTCAA+CGG | - | chr4.4:34428267-34428286 | None:intergenic | 30.0% | |
| ATTTCTTGAAGCACAAGAAA+AGG | + | chr4.4:34427311-34427330 | MS.gene28931:CDS | 30.0% | |
| CATTTATAGGACAGAAATGA+AGG | + | chr4.4:34426842-34426861 | MS.gene28931:intron | 30.0% | |
| CGTTAATGCAAAACACTTTA+AGG | + | chr4.4:34428280-34428299 | MS.gene28931:CDS | 30.0% | |
| GACATTGTCAAGATGTTTAT+TGG | - | chr4.4:34429047-34429066 | None:intergenic | 30.0% | |
| GACTAATCAGAATCTAAAGA+AGG | + | chr4.4:34430523-34430542 | MS.gene28931:CDS | 30.0% | |
| GATAAAGATTTACGAAGAAC+AGG | + | chr4.4:34429999-34430018 | MS.gene28931:CDS | 30.0% | |
| GGATGATTTAAATCTTACAC+AGG | + | chr4.4:34429267-34429286 | MS.gene28931:CDS | 30.0% | |
| TGACTCTAAATCACTCAATT+TGG | - | chr4.4:34430208-34430227 | None:intergenic | 30.0% | |
| TTAATGACTTGATGTTCAAG+TGG | - | chr4.4:34427056-34427075 | None:intergenic | 30.0% | |
| TTTAATGAATTCTCCATCTG+AGG | - | chr4.4:34427217-34427236 | None:intergenic | 30.0% | |
| TTTGCTTGAGATATTTCCTT+AGG | - | chr4.4:34427174-34427193 | None:intergenic | 30.0% | |
| ! | AACAGATTCTCTTTTATCTC+AGG | + | chr4.4:34428358-34428377 | MS.gene28931:CDS | 30.0% |
| ! | CATTTTCTAATGATGTTGCA+GGG | + | chr4.4:34431417-34431436 | MS.gene28931:intron | 30.0% |
| ! | GCTTGAGAAAATCAAGATTT+TGG | + | chr4.4:34429528-34429547 | MS.gene28931:CDS | 30.0% |
| ! | GGAAAAATTGAAACTTGTTC+AGG | + | chr4.4:34430164-34430183 | MS.gene28931:CDS | 30.0% |
| ! | TACAGCAAGATTTTCTTCAA+TGG | - | chr4.4:34429368-34429387 | None:intergenic | 30.0% |
| ! | TAGCTCTATTTCACTTTCAT+TGG | - | chr4.4:34429140-34429159 | None:intergenic | 30.0% |
| ! | TGAAGAAAATCTTGCTGTAA+GGG | + | chr4.4:34429369-34429388 | MS.gene28931:CDS | 30.0% |
| ! | TGAGAAAATCAAGATTTTGG+AGG | + | chr4.4:34429531-34429550 | MS.gene28931:CDS | 30.0% |
| ! | TTCTTCTAGAGAATTCTTCA+GGG | - | chr4.4:34431193-34431212 | None:intergenic | 30.0% |
| ! | TTGAAGAAAATCTTGCTGTA+AGG | + | chr4.4:34429368-34429387 | MS.gene28931:CDS | 30.0% |
| !! | ATGAATTTCAAGTTCATCCT+TGG | + | chr4.4:34431606-34431625 | MS.gene28931:CDS | 30.0% |
| !! | TCAGAAAGATGAAAGCATTA+AGG | + | chr4.4:34426611-34426630 | MS.gene28931:CDS | 30.0% |
| !! | TGAAGAATCTTTGAAATCTG+AGG | + | chr4.4:34430601-34430620 | MS.gene28931:CDS | 30.0% |
| !!! | CTGCAGATTGTATTTTTTCT+CGG | - | chr4.4:34427514-34427533 | None:intergenic | 30.0% |
| !!! | GCACTTGTTTTACAAAACAT+AGG | - | chr4.4:34430746-34430765 | None:intergenic | 30.0% |
| AAATGTGCTGAATGAAAAGG+TGG | + | chr4.4:34430941-34430960 | MS.gene28931:CDS | 35.0% | |
| AACCAAGATTGATGAACTTC+AGG | + | chr4.4:34429741-34429760 | MS.gene28931:CDS | 35.0% | |
| AATGAATCCTACGCTAACAA+GGG | - | chr4.4:34431353-34431372 | None:intergenic | 35.0% | |
| AATGCAGAGAAAAAAGGACT+TGG | + | chr4.4:34428236-34428255 | MS.gene28931:CDS | 35.0% | |
| AATTCATGATAGGCGAATCA+TGG | - | chr4.4:34431593-34431612 | None:intergenic | 35.0% | |
| ACAAGAAAAAGTTTCCGAGT+TGG | + | chr4.4:34428100-34428119 | MS.gene28931:CDS | 35.0% | |
| ACTCAATTTGGACTCATAGA+CGG | - | chr4.4:34430196-34430215 | None:intergenic | 35.0% | |
| AGAAACTGCTGGAATAAATG+AGG | + | chr4.4:34430143-34430162 | MS.gene28931:CDS | 35.0% | |
| AGAAATCTGCATTGCAAAGT+AGG | + | chr4.4:34430651-34430670 | MS.gene28931:CDS | 35.0% | |
| ATATAGAGCTTACTTCTGCA+AGG | + | chr4.4:34429398-34429417 | MS.gene28931:CDS | 35.0% | |
| ATGCAGAGAAAAAAGGACTT+GGG | + | chr4.4:34428237-34428256 | MS.gene28931:CDS | 35.0% | |
| ATTAAACCTGCGAAAGACTT+CGG | + | chr4.4:34428013-34428032 | MS.gene28931:CDS | 35.0% | |
| ATTATCTTCGGCATCATTCT+TGG | + | chr4.4:34431645-34431664 | MS.gene28931:CDS | 35.0% | |
| CAAGAAGAATTCACAATTGG+AGG | + | chr4.4:34428784-34428803 | MS.gene28931:CDS | 35.0% | |
| CAAGGTAACTATCCAAATCT+CGG | + | chr4.4:34431305-34431324 | MS.gene28931:intron | 35.0% | |
| CAGCTTCTCATTCAATTCTT+TGG | - | chr4.4:34429962-34429981 | None:intergenic | 35.0% | |
| CCTTGAAAATACACTGCAAA+CGG | + | chr4.4:34429114-34429133 | MS.gene28931:CDS | 35.0% | |
| CTCCAATTGTGAATTCTTCT+TGG | - | chr4.4:34428786-34428805 | None:intergenic | 35.0% | |
| CTTCCTTTGTAGAGACAAAT+AGG | - | chr4.4:34428076-34428095 | None:intergenic | 35.0% | |
| GAAGATCTTCATAGTGAATC+CGG | + | chr4.4:34428425-34428444 | MS.gene28931:CDS | 35.0% | |
| TAATTTACCCTTGTTAGCGT+AGG | + | chr4.4:34431343-34431362 | MS.gene28931:intron | 35.0% | |
| TATCAACACGCAGATATCTT+CGG | + | chr4.4:34430472-34430491 | MS.gene28931:intron | 35.0% | |
| TCAGCATACAAGAACAACAT+TGG | - | chr4.4:34431062-34431081 | None:intergenic | 35.0% | |
| TCTGAGAATGAATTACTGGT+TGG | + | chr4.4:34429700-34429719 | MS.gene28931:CDS | 35.0% | |
| TCTTCTTAATAGCCTATTGC+AGG | + | chr4.4:34428712-34428731 | MS.gene28931:CDS | 35.0% | |
| TGAAGATAGTTTGAGCAAAC+TGG | + | chr4.4:34429603-34429622 | MS.gene28931:CDS | 35.0% | |
| TGAATCTAGACTACATGAAG+AGG | + | chr4.4:34430706-34430725 | MS.gene28931:CDS | 35.0% | |
| TGATGAGAAAATCTCAGTCA+AGG | + | chr4.4:34431287-34431306 | MS.gene28931:CDS | 35.0% | |
| TGCTGATAAGAAAGATGCTT+TGG | + | chr4.4:34431449-34431468 | MS.gene28931:CDS | 35.0% | |
| TTATCTTCGGCATCATTCTT+GGG | + | chr4.4:34431646-34431665 | MS.gene28931:CDS | 35.0% | |
| TTCAAGTGGTGATCAACTAA+AGG | - | chr4.4:34427042-34427061 | None:intergenic | 35.0% | |
| TTCATTGGCAGAATGAGTTT+CGG | - | chr4.4:34429869-34429888 | None:intergenic | 35.0% | |
| ! | AACTTCCAATAGCTGTGTTT+TGG | - | chr4.4:34427943-34427962 | None:intergenic | 35.0% |
| ! | GAAGAAAATCTTGCTGTAAG+GGG | + | chr4.4:34429370-34429389 | MS.gene28931:CDS | 35.0% |
| ! | GCATTTTCTAATGATGTTGC+AGG | + | chr4.4:34431416-34431435 | MS.gene28931:intron | 35.0% |
| ! | GTCGAGATGAGATATTTTCT+CGG | - | chr4.4:34428660-34428679 | None:intergenic | 35.0% |
| ! | GTTCTTCTAGAGAATTCTTC+AGG | - | chr4.4:34431194-34431213 | None:intergenic | 35.0% |
| ! | TCTCTGAAGGAAGAATTGAA+GGG | + | chr4.4:34427822-34427841 | MS.gene28931:CDS | 35.0% |
| ! | TTCTCTGAAGGAAGAATTGA+AGG | + | chr4.4:34427821-34427840 | MS.gene28931:CDS | 35.0% |
| !! | ATTTTGGAGGAAAATATCGC+AGG | + | chr4.4:34429544-34429563 | MS.gene28931:CDS | 35.0% |
| !! | GCTCTTGTATCGATTATCTT+CGG | + | chr4.4:34431633-34431652 | MS.gene28931:CDS | 35.0% |
| !! | GGATCAAATCTTCTAGTTCT+CGG | - | chr4.4:34428880-34428899 | None:intergenic | 35.0% |
| !! | TGAGCTTCTTTCAGTTTTGT+GGG | - | chr4.4:34427274-34427293 | None:intergenic | 35.0% |
| AACTTTCTACAGAAGAGGCA+CGG | + | chr4.4:34427673-34427692 | MS.gene28931:CDS | 40.0% | |
| AAGACTTCTTTGACTAGCAG+TGG | - | chr4.4:34428462-34428481 | None:intergenic | 40.0% | |
| ACAGACTACTATAGCTAACC+AGG | + | chr4.4:34430992-34431011 | MS.gene28931:CDS | 40.0% | |
| ACATGAAAACTCTCAGCTGA+AGG | + | chr4.4:34427389-34427408 | MS.gene28931:CDS | 40.0% | |
| ACTCGAGGTTGAACTGAAAA+CGG | + | chr4.4:34427341-34427360 | MS.gene28931:CDS | 40.0% | |
| ACTCTCCAAAACACAGCTAT+TGG | + | chr4.4:34427935-34427954 | MS.gene28931:CDS | 40.0% | |
| ATCTCAAGCAAAGAAAGACG+AGG | + | chr4.4:34427182-34427201 | MS.gene28931:CDS | 40.0% | |
| ATCTCAGAAGTTGGAACTAG+AGG | + | chr4.4:34431164-34431183 | MS.gene28931:CDS | 40.0% | |
| ATGCTTTGTCACCAAGTCTT+CGG | - | chr4.4:34430298-34430317 | None:intergenic | 40.0% | |
| CAAAGAAGTCTTGAGCTTGA+AGG | + | chr4.4:34428470-34428489 | MS.gene28931:CDS | 40.0% | |
| CAAAGATATAGACTGTTCCC+CGG | - | chr4.4:34429572-34429591 | None:intergenic | 40.0% | |
| CAATGAATCCTACGCTAACA+AGG | - | chr4.4:34431354-34431373 | None:intergenic | 40.0% | |
| CAATTCAGAGCTTGAACAGA+AGG | + | chr4.4:34428391-34428410 | MS.gene28931:CDS | 40.0% | |
| CAATTCCTGCATCTTCTTTC+GGG | - | chr4.4:34427640-34427659 | None:intergenic | 40.0% | |
| CATCCCTCACAATTTCCAAT+AGG | - | chr4.4:34429252-34429271 | None:intergenic | 40.0% | |
| CATGAAAACTCTCAGCTGAA+GGG | + | chr4.4:34427390-34427409 | MS.gene28931:CDS | 40.0% | |
| CGAAGTTACATTGAAGAGTC+AGG | + | chr4.4:34428172-34428191 | MS.gene28931:CDS | 40.0% | |
| CTCCTGAAGTTCATCAATCT+TGG | - | chr4.4:34429746-34429765 | None:intergenic | 40.0% | |
| CTTTCGCAGGTTTAATTCCT+CGG | - | chr4.4:34428009-34428028 | None:intergenic | 40.0% | |
| GAAATGAAGGAGATGTGTTC+TGG | + | chr4.4:34426855-34426874 | MS.gene28931:intron | 40.0% | |
| GAAATTGAGTGCGAAAAGCA+TGG | + | chr4.4:34427785-34427804 | MS.gene28931:CDS | 40.0% | |
| GAAGAATTCACAATTGGAGG+AGG | + | chr4.4:34428787-34428806 | MS.gene28931:CDS | 40.0% | |
| GAGAAGCTGAATACCTTAGA+AGG | + | chr4.4:34429973-34429992 | MS.gene28931:CDS | 40.0% | |
| GCAATTCCTGCATCTTCTTT+CGG | - | chr4.4:34427641-34427660 | None:intergenic | 40.0% | |
| GCTTCAAGAAATTCTCTGCT+AGG | - | chr4.4:34427303-34427322 | None:intergenic | 40.0% | |
| GGAAAAACTAAAGCTTTCGG+AGG | + | chr4.4:34428322-34428341 | MS.gene28931:CDS | 40.0% | |
| GGAGTTGTGTAGTGATTTAG+AGG | + | chr4.4:34428301-34428320 | MS.gene28931:CDS | 40.0% | |
| TAAGCAGAAAGAGCTTCTTC+AGG | + | chr4.4:34427572-34427591 | MS.gene28931:CDS | 40.0% | |
| TCAAGAAATTCTCTGCTAGG+AGG | - | chr4.4:34427300-34427319 | None:intergenic | 40.0% | |
| TCTCGACGCTAAATTGAAAG+AGG | + | chr4.4:34428673-34428692 | MS.gene28931:CDS | 40.0% | |
| TGAACAGAAGGTGAAGTCTT+TGG | + | chr4.4:34428403-34428422 | MS.gene28931:CDS | 40.0% | |
| TGAAGCACAAGAAAAGGTTC+AGG | + | chr4.4:34427317-34427336 | MS.gene28931:CDS | 40.0% | |
| TGACCTTGAAGAGAAGTTGA+AGG | + | chr4.4:34430565-34430584 | MS.gene28931:CDS | 40.0% | |
| TGCAGAGAAAAAAGGACTTG+GGG | + | chr4.4:34428238-34428257 | MS.gene28931:CDS | 40.0% | |
| TGCTGAGTCAGAAAACCTAT+TGG | + | chr4.4:34429234-34429253 | MS.gene28931:CDS | 40.0% | |
| ! | ATTGCAGAAGCATACTGAGA+AGG | + | chr4.4:34429927-34429946 | MS.gene28931:CDS | 40.0% |
| ! | CAACTCACTCACTCTCTTTT+CGG | - | chr4.4:34428930-34428949 | None:intergenic | 40.0% |
| ! | CCGTTTGCAGTGTATTTTCA+AGG | - | chr4.4:34429117-34429136 | None:intergenic | 40.0% |
| ! | CTGAGAGTTTTCATGTTCAG+AGG | - | chr4.4:34427385-34427404 | None:intergenic | 40.0% |
| ! | CTGAGCTTCTTTCAGTTTTG+TGG | - | chr4.4:34427275-34427294 | None:intergenic | 40.0% |
| ! | CTGATTTGATATGAGAGCTC+TGG | - | chr4.4:34428901-34428920 | None:intergenic | 40.0% |
| ! | GAAAAGCATGGAAGATGAGA+TGG | + | chr4.4:34427797-34427816 | MS.gene28931:CDS | 40.0% |
| ! | TTCTTGCTCTTCCTTTTCGA+TGG | - | chr4.4:34431507-34431526 | None:intergenic | 40.0% |
| !! | CAGTGTATTTTCAAGGCTTG+AGG | - | chr4.4:34429110-34429129 | None:intergenic | 40.0% |
| !! | CTGTTCAAGCTCTGAATTGT+TGG | - | chr4.4:34428390-34428409 | None:intergenic | 40.0% |
| !! | GATGAAGAAGTTGATGCTGA+AGG | - | chr4.4:34431549-34431568 | None:intergenic | 40.0% |
| AAAGAATGCTGCCGAAGACT+TGG | + | chr4.4:34430284-34430303 | MS.gene28931:CDS | 45.0% | |
| AAAGGTCAAGCTGCAAATGG+AGG | + | chr4.4:34428130-34428149 | MS.gene28931:CDS | 45.0% | |
| ACCAGTCGAGCAGCATTTAT+AGG | + | chr4.4:34426829-34426848 | MS.gene28931:intron | 45.0% | |
| ACCTTTGTCACTGGAACTTC+TGG | - | chr4.4:34426576-34426595 | None:intergenic | 45.0% | |
| AGAAAAGGTTCAGGAACTCG+AGG | + | chr4.4:34427326-34427345 | MS.gene28931:CDS | 45.0% | |
| AGATGAGATGGCTTCTCTGA+AGG | + | chr4.4:34427809-34427828 | MS.gene28931:CDS | 45.0% | |
| AGCTTCTTGGAGCTTCTGTT+CGG | - | chr4.4:34429467-34429486 | None:intergenic | 45.0% | |
| AGGAGCAGAATCTCAGAAGT+TGG | + | chr4.4:34431155-34431174 | MS.gene28931:CDS | 45.0% | |
| AGTGACAAAGGTTGTCGAAG+AGG | + | chr4.4:34426584-34426603 | MS.gene28931:CDS | 45.0% | |
| AGTGCAGACATTGAAGTCAC+AGG | + | chr4.4:34430326-34430345 | MS.gene28931:CDS | 45.0% | |
| ATTGGCAGAATGAGTTTCGG+AGG | - | chr4.4:34429866-34429885 | None:intergenic | 45.0% | |
| CGAAAAGAGAGTGAGTGAGT+TGG | + | chr4.4:34428928-34428947 | MS.gene28931:CDS | 45.0% | |
| CGAGAAGGAAGAGAATGTGT+TGG | + | chr4.4:34427239-34427258 | MS.gene28931:CDS | 45.0% | |
| CGCTAAATTGAAAGAGGCTG+AGG | + | chr4.4:34428679-34428698 | MS.gene28931:CDS | 45.0% | |
| GAAAGAGCTTCTTCAGGTGA+AGG | + | chr4.4:34427578-34427597 | MS.gene28931:CDS | 45.0% | |
| GAACAGTGTTCTGTCAGAGA+AGG | + | chr4.4:34429771-34429790 | MS.gene28931:CDS | 45.0% | |
| GACCTTTGCACTTTCCAACT+CGG | - | chr4.4:34428117-34428136 | None:intergenic | 45.0% | |
| GAGGAAGATAATGCCTCAGA+TGG | + | chr4.4:34427201-34427220 | MS.gene28931:CDS | 45.0% | |
| GCATCTCATCTCCATCGAAA+AGG | + | chr4.4:34431493-34431512 | MS.gene28931:CDS | 45.0% | |
| GCATCTTGAAGCAGTAGTTG+AGG | + | chr4.4:34430089-34430108 | MS.gene28931:CDS | 45.0% | |
| GCTCCTTCAACTTCTCTTCA+AGG | - | chr4.4:34430571-34430590 | None:intergenic | 45.0% | |
| GCTGCAACTTTCTACAGAAG+AGG | + | chr4.4:34427668-34427687 | MS.gene28931:CDS | 45.0% | |
| GCTTGAAACACGCTTCATAG+CGG | + | chr4.4:34428547-34428566 | MS.gene28931:CDS | 45.0% | |
| GGTGAGTTTATGGACACTGA+AGG | - | chr4.4:34426812-34426831 | None:intergenic | 45.0% | |
| GGTTCACATGCTGAATCTGA+GGG | + | chr4.4:34427723-34427742 | MS.gene28931:CDS | 45.0% | |
| TACAAATGCAGCTGCAGAAG+AGG | + | chr4.4:34428505-34428524 | MS.gene28931:CDS | 45.0% | |
| TATCCATGTGCTCCTGCAAT+AGG | - | chr4.4:34428727-34428746 | None:intergenic | 45.0% | |
| TCCAGAAGTTCCAGTGACAA+AGG | + | chr4.4:34426572-34426591 | MS.gene28931:CDS | 45.0% | |
| TCCGAGACTCATATTCAAGC+CGG | + | chr4.4:34431567-34431586 | MS.gene28931:CDS | 45.0% | |
| TCCTATAAATGCTGCTCGAC+TGG | - | chr4.4:34426833-34426852 | None:intergenic | 45.0% | |
| TCGATACAAGAGCTACTCCA+AGG | - | chr4.4:34431626-34431645 | None:intergenic | 45.0% | |
| TCTAATGATGTTGCAGGGTG+AGG | + | chr4.4:34431422-34431441 | MS.gene28931:intron | 45.0% | |
| TCTTCGACAACCTTTGTCAC+TGG | - | chr4.4:34426585-34426604 | None:intergenic | 45.0% | |
| TGAAACTCGTAAAGCTGAGC+TGG | + | chr4.4:34430044-34430063 | MS.gene28931:CDS | 45.0% | |
| TGAATCTGAGGGAAACAAGG+CGG | + | chr4.4:34427734-34427753 | MS.gene28931:CDS | 45.0% | |
| TGCAAAGGTCAAGCTGCAAA+TGG | + | chr4.4:34428127-34428146 | MS.gene28931:CDS | 45.0% | |
| TGCTGAATCTGAGGGAAACA+AGG | + | chr4.4:34427731-34427750 | MS.gene28931:CDS | 45.0% | |
| TGGTTCACATGCTGAATCTG+AGG | + | chr4.4:34427722-34427741 | MS.gene28931:CDS | 45.0% | |
| TTCAAGGATGCGAGCTTCAT+TGG | - | chr4.4:34429884-34429903 | None:intergenic | 45.0% | |
| ! | TGTCACTGGAACTTCTGGAA+TGG | - | chr4.4:34426571-34426590 | None:intergenic | 45.0% |
| ! | TTCCGAGTTGGAAAGTGCAA+AGG | + | chr4.4:34428112-34428131 | MS.gene28931:CDS | 45.0% |
| !! | AAATGCAGACTTGCTGCCTA+AGG | + | chr4.4:34427155-34427174 | MS.gene28931:CDS | 45.0% |
| AAGCTCCCGAAAGAAGATGC+AGG | + | chr4.4:34427632-34427651 | MS.gene28931:CDS | 50.0% | |
| AATGATGTTGCAGGGTGAGG+AGG | + | chr4.4:34431425-34431444 | MS.gene28931:intron | 50.0% | |
| AGCGGCAGAGCAAAAGAATG+TGG | + | chr4.4:34428565-34428584 | MS.gene28931:CDS | 50.0% | |
| AGGAAAATATCGCAGGAGCC+GGG | + | chr4.4:34429551-34429570 | MS.gene28931:CDS | 50.0% | |
| ATGATGTTGCAGGGTGAGGA+GGG | + | chr4.4:34431426-34431445 | MS.gene28931:intron | 50.0% | |
| CACGTCTCTCTCAGCATCAT+TGG | - | chr4.4:34428627-34428646 | None:intergenic | 50.0% | |
| CATGATAGGCGAATCATGGC+CGG | - | chr4.4:34431589-34431608 | None:intergenic | 50.0% | |
| CTGCTCGACTGGTGAGTTTA+TGG | - | chr4.4:34426822-34426841 | None:intergenic | 50.0% | |
| GACAAAGGTTGTCGAAGAGG+TGG | + | chr4.4:34426587-34426606 | MS.gene28931:CDS | 50.0% | |
| GAGCGTGAAACAGAAACTGC+TGG | + | chr4.4:34430132-34430151 | MS.gene28931:CDS | 50.0% | |
| GAGGAAAATATCGCAGGAGC+CGG | + | chr4.4:34429550-34429569 | MS.gene28931:CDS | 50.0% | |
| GAGGAGCTGCATAAGCAAAG+TGG | + | chr4.4:34427702-34427721 | MS.gene28931:CDS | 50.0% | |
| GTGTTTCCGAAGTCTTTCGC+AGG | - | chr4.4:34428022-34428041 | None:intergenic | 50.0% | |
| TGCATTGCAAAGTAGGCTGC+AGG | + | chr4.4:34430658-34430677 | MS.gene28931:CDS | 50.0% | |
| TTGACTAGCAGTGGCTGCAA+CGG | - | chr4.4:34428453-34428472 | None:intergenic | 50.0% | |
| ! | TAGCCTATTGCAGGAGCACA+TGG | + | chr4.4:34428721-34428740 | MS.gene28931:CDS | 50.0% |
| ! | TCTAGTAGACGAGTTGACCG+AGG | + | chr4.4:34427989-34428008 | MS.gene28931:CDS | 50.0% |
| ! | TGCTGAAGGAGTTGTCGCTT+CGG | - | chr4.4:34431535-34431554 | None:intergenic | 50.0% |
| !! | CTTCAGGTGAAGGAAGCGTT+TGG | + | chr4.4:34427588-34427607 | MS.gene28931:CDS | 50.0% |
| !! | GCCGGCTTGAATATGAGTCT+CGG | - | chr4.4:34431571-34431590 | None:intergenic | 50.0% |
| AACGCGTTCACGCACATACC+TGG | - | chr4.4:34431013-34431032 | None:intergenic | 55.0% | |
| CTCTGCTGCACTTGTCGAGA+AGG | + | chr4.4:34430233-34430252 | MS.gene28931:CDS | 55.0% | |
| GCAGCTCAGCACTCTTGAAG+AGG | + | chr4.4:34427530-34427549 | MS.gene28931:CDS | 55.0% | |
| GCTGCGCTCATTGTTCATGG+TGG | - | chr4.4:34428858-34428877 | None:intergenic | 55.0% | |
| GGAAAATATCGCAGGAGCCG+GGG | + | chr4.4:34429552-34429571 | MS.gene28931:CDS | 55.0% | |
| GGTGGCTCGATCTTCATGCT+CGG | - | chr4.4:34428840-34428859 | None:intergenic | 55.0% | |
| TCGGCTGCGCTCATTGTTCA+TGG | - | chr4.4:34428861-34428880 | None:intergenic | 55.0% | |
| ! | AGAAGAGGCACGGAAGTTCG+AGG | + | chr4.4:34427683-34427702 | MS.gene28931:CDS | 55.0% |
| AGCAGTGGCTGCAACGGTTC+CGG | - | chr4.4:34428447-34428466 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 34426549 | 34431680 | 34426549 | ID=MS.gene28931 |
| chr4.4 | mRNA | 34426549 | 34431680 | 34426549 | ID=MS.gene28931.t1;Parent=MS.gene28931 |
| chr4.4 | exon | 34426549 | 34426632 | 34426549 | ID=MS.gene28931.t1.exon1;Parent=MS.gene28931.t1 |
| chr4.4 | CDS | 34426549 | 34426632 | 34426549 | ID=cds.MS.gene28931.t1;Parent=MS.gene28931.t1 |
| chr4.4 | exon | 34427150 | 34430347 | 34427150 | ID=MS.gene28931.t1.exon2;Parent=MS.gene28931.t1 |
| chr4.4 | CDS | 34427150 | 34430347 | 34427150 | ID=cds.MS.gene28931.t1;Parent=MS.gene28931.t1 |
| chr4.4 | exon | 34430485 | 34430727 | 34430485 | ID=MS.gene28931.t1.exon3;Parent=MS.gene28931.t1 |
| chr4.4 | CDS | 34430485 | 34430727 | 34430485 | ID=cds.MS.gene28931.t1;Parent=MS.gene28931.t1 |
| chr4.4 | exon | 34430855 | 34431013 | 34430855 | ID=MS.gene28931.t1.exon4;Parent=MS.gene28931.t1 |
| chr4.4 | CDS | 34430855 | 34431013 | 34430855 | ID=cds.MS.gene28931.t1;Parent=MS.gene28931.t1 |
| chr4.4 | exon | 34431153 | 34431308 | 34431153 | ID=MS.gene28931.t1.exon5;Parent=MS.gene28931.t1 |
| chr4.4 | CDS | 34431153 | 34431308 | 34431153 | ID=cds.MS.gene28931.t1;Parent=MS.gene28931.t1 |
| chr4.4 | exon | 34431438 | 34431680 | 34431438 | ID=MS.gene28931.t1.exon6;Parent=MS.gene28931.t1 |
| chr4.4 | CDS | 34431438 | 34431680 | 34431438 | ID=cds.MS.gene28931.t1;Parent=MS.gene28931.t1 |
| Gene Sequence |
| Protein sequence |
