Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30963.t1 | XP_013465400.1 | 96.6 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 1.40E-71 | 278.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30963.t1 | Q41050 | 84.6 | 143 | 22 | 0 | 1 | 143 | 1 | 143 | 2.5e-61 | 236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30963.t1 | A0A072VMU1 | 96.6 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 1.0e-71 | 278.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052116 | MS.gene30963 | 0.848375 | 6.38E-60 | -1.69E-46 |
| MS.gene058403 | MS.gene30963 | 0.815879 | 7.37E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30963 | MS.gene064203 | PPI |
| MS.gene30963 | MS.gene35738 | PPI |
| MS.gene30963 | MS.gene043354 | PPI |
| MS.gene31538 | MS.gene30963 | PPI |
| MS.gene046061 | MS.gene30963 | PPI |
| MS.gene069932 | MS.gene30963 | PPI |
| MS.gene028992 | MS.gene30963 | PPI |
| MS.gene30963 | MS.gene45331 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30963.t1 | MTR_2g096900 | 96.599 | 147 | 5 | 0 | 1 | 147 | 1 | 147 | 6.05e-101 | 286 |
| MS.gene30963.t1 | MTR_2g096920 | 86.014 | 143 | 20 | 0 | 1 | 143 | 1 | 143 | 5.62e-76 | 223 |
| MS.gene30963.t1 | MTR_2g096920 | 88.000 | 100 | 12 | 0 | 1 | 100 | 1 | 100 | 2.29e-60 | 182 |
| MS.gene30963.t1 | MTR_4g121900 | 33.766 | 154 | 75 | 2 | 18 | 144 | 24 | 177 | 4.15e-22 | 87.0 |
| MS.gene30963.t1 | MTR_2g034550 | 33.548 | 155 | 75 | 3 | 18 | 144 | 26 | 180 | 3.07e-20 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30963.t1 | AT2G28900 | 61.224 | 147 | 57 | 0 | 1 | 147 | 1 | 147 | 5.10e-62 | 187 |
| MS.gene30963.t1 | AT4G16160 | 32.026 | 153 | 77 | 3 | 18 | 143 | 21 | 173 | 4.20e-19 | 79.3 |
| MS.gene30963.t1 | AT4G16160 | 31.613 | 155 | 77 | 3 | 18 | 143 | 21 | 175 | 5.85e-19 | 79.0 |
Find 47 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCCTCATAGCAGCATTTC+AGG | 0.220503 | 2.2:+5227873 | MS.gene30963:CDS |
| CTTCTCAACCTCACTGTTGA+TGG | 0.269257 | 2.2:+5227945 | MS.gene30963:CDS |
| ATTGTAGTAGGTGCCATTAC+AGG | 0.330295 | 2.2:+5229387 | MS.gene30963:CDS |
| ACTGCTGCAGCATTCATAAA+TGG | 0.345573 | 2.2:+5229423 | MS.gene30963:CDS |
| CATTTAAAGAAGGTGCATAC+TGG | 0.364036 | 2.2:+5228838 | MS.gene30963:CDS |
| TAAATGGCTGGAGTTTCTAA+TGG | 0.368333 | 2.2:+5229439 | MS.gene30963:CDS |
| GTTGATGGTTTCTTGAAGAT+TGG | 0.388016 | 2.2:+5227960 | MS.gene30963:CDS |
| GGATCCGTGGCACCAGAGAC+TGG | 0.423846 | 2.2:+5228997 | MS.gene30963:CDS |
| ACATTTGGAGGTGCAGTGAC+AGG | 0.426302 | 2.2:+5229324 | MS.gene30963:CDS |
| GTATATGTTGGAACAGAATA+CGG | 0.434501 | 2.2:+5228966 | MS.gene30963:CDS |
| CGCAATTGCAGCCCCTGTAA+TGG | 0.440225 | 2.2:-5229400 | None:intergenic |
| AGGTGCAGTGACAGGGGCTC+TGG | 0.442203 | 2.2:+5229332 | MS.gene30963:CDS |
| ACCCTTTCGAGCAATATGAT+AGG | 0.487140 | 2.2:-5228104 | None:intergenic |
| TGAGAGAATTACCCAGTCTC+TGG | 0.488901 | 2.2:-5229009 | None:intergenic |
| GTCAATGACCACATCGACCT+TGG | 0.493655 | 2.2:-5227910 | None:intergenic |
| ATTTAAAGAAGGTGCATACT+GGG | 0.494694 | 2.2:+5228839 | MS.gene30963:CDS |
| ACCTATCATATTGCTCGAAA+GGG | 0.494769 | 2.2:+5228103 | MS.gene30963:CDS |
| AAGGCAGACAAGATTGTAGT+AGG | 0.498217 | 2.2:+5229375 | MS.gene30963:CDS |
| GCTATAGCTGGTGTATATGT+TGG | 0.502697 | 2.2:+5228954 | MS.gene30963:CDS |
| CTGCAGCATTCATAAATGGC+TGG | 0.512276 | 2.2:+5229427 | MS.gene30963:CDS |
| TACCTATCATATTGCTCGAA+AGG | 0.512817 | 2.2:+5228102 | MS.gene30963:CDS |
| ATCTGCAGCCAACAATGAAA+AGG | 0.513448 | 2.2:+5229356 | MS.gene30963:CDS |
| TCAATGACCACATCGACCTT+GGG | 0.517343 | 2.2:-5227909 | None:intergenic |
| TTGTAGTAGGTGCCATTACA+GGG | 0.523008 | 2.2:+5229388 | MS.gene30963:CDS |
| AGGATCAGTGTCTTCTCCCA+AGG | 0.530325 | 2.2:+5227893 | MS.gene30963:CDS |
| TATATGTTGGAACAGAATAC+GGG | 0.530549 | 2.2:+5228967 | MS.gene30963:CDS |
| CATTTGGAGGTGCAGTGACA+GGG | 0.546047 | 2.2:+5229325 | MS.gene30963:CDS |
| ACGCTTACAGGAGCTATAGC+TGG | 0.557663 | 2.2:+5228942 | MS.gene30963:intron |
| GGTCGATGTGGTCATTGACA+TGG | 0.564917 | 2.2:+5227914 | MS.gene30963:CDS |
| GATCCTGAAATGCTGCTATG+AGG | 0.565334 | 2.2:-5227876 | None:intergenic |
| ATCCTCTGCAAGTGCCCTTG+TGG | 0.568133 | 2.2:-5228080 | None:intergenic |
| TGTCACTGCACCTCCAAATG+TGG | 0.580744 | 2.2:-5229322 | None:intergenic |
| CTGAAGAAGACATTTAAAGA+AGG | 0.586357 | 2.2:+5228828 | MS.gene30963:CDS |
| TTACCCAGTCTCTGGTGCCA+CGG | 0.593471 | 2.2:-5229001 | None:intergenic |
| GATCCGTGGCACCAGAGACT+GGG | 0.594640 | 2.2:+5228998 | MS.gene30963:CDS |
| AGCCACAAGGGCACTTGCAG+AGG | 0.596020 | 2.2:+5228078 | MS.gene30963:CDS |
| TACGGGGTGGAGAGGATCCG+TGG | 0.613293 | 2.2:+5228984 | MS.gene30963:CDS |
| GTCTTCTCCCAAGGTCGATG+TGG | 0.618468 | 2.2:+5227902 | MS.gene30963:CDS |
| GAACAGAATACGGGGTGGAG+AGG | 0.619958 | 2.2:+5228976 | MS.gene30963:CDS |
| GTCGATGTGGTCATTGACAT+GGG | 0.620754 | 2.2:+5227915 | MS.gene30963:CDS |
| TCAACAGTGAGGTTGAGAAG+TGG | 0.636785 | 2.2:-5227942 | None:intergenic |
| ATTTGGAGGTGCAGTGACAG+GGG | 0.640699 | 2.2:+5229326 | MS.gene30963:CDS |
| TTTAAAGAAGGTGCATACTG+GGG | 0.700970 | 2.2:+5228840 | MS.gene30963:CDS |
| TGTAGTAGGTGCCATTACAG+GGG | 0.704939 | 2.2:+5229389 | MS.gene30963:CDS |
| TCAAGAAACCATCAACAGTG+AGG | 0.715759 | 2.2:-5227953 | None:intergenic |
| TGTTGGAACAGAATACGGGG+TGG | 0.732754 | 2.2:+5228971 | MS.gene30963:CDS |
| ATATGTTGGAACAGAATACG+GGG | 0.764667 | 2.2:+5228968 | MS.gene30963:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTAAAAATTATATTTT+AGG | - | chr2.2:5228399-5228418 | None:intergenic | 0.0% |
| !!! | AAATTATATTTTAGGAGTAA+AGG | - | chr2.2:5228391-5228410 | None:intergenic | 15.0% |
| !! | AAAAGATGAAAACTTTGATT+CGG | + | chr2.2:5228171-5228190 | MS.gene30963:intron | 20.0% |
| !! | AACTTAAATTGAACAATAGA+AGG | - | chr2.2:5229242-5229261 | None:intergenic | 20.0% |
| !! | TATTTATCAAAGTTAAAGCA+TGG | - | chr2.2:5228627-5228646 | None:intergenic | 20.0% |
| !!! | AAATGTGTTAACTTTGTTTT+AGG | + | chr2.2:5229204-5229223 | MS.gene30963:intron | 20.0% |
| !!! | ATGCTTTAACTTTGATAAAT+AGG | + | chr2.2:5228626-5228645 | MS.gene30963:intron | 20.0% |
| !!! | TTATCATGATTGATTCATTT+GGG | + | chr2.2:5228361-5228380 | MS.gene30963:intron | 20.0% |
| !!! | TTTTGGAGATTTTAACAAAA+GGG | - | chr2.2:5228155-5228174 | None:intergenic | 20.0% |
| ! | AAAGATGAAAACTTTGATTC+GGG | + | chr2.2:5228172-5228191 | MS.gene30963:intron | 25.0% |
| ! | AGACAAAATGTCTATTGAAT+GGG | - | chr2.2:5228763-5228782 | None:intergenic | 25.0% |
| ! | AGAGATTAGATGTCATTATA+TGG | - | chr2.2:5229121-5229140 | None:intergenic | 25.0% |
| ! | CAATAATGTGATTTGAACTT+GGG | + | chr2.2:5228480-5228499 | MS.gene30963:intron | 25.0% |
| ! | GAAAACACTTAAAATAGACT+TGG | + | chr2.2:5229043-5229062 | MS.gene30963:intron | 25.0% |
| ! | TAGACAAAATGTCTATTGAA+TGG | - | chr2.2:5228764-5228783 | None:intergenic | 25.0% |
| !! | CTTATCATGATTGATTCATT+TGG | + | chr2.2:5228360-5228379 | MS.gene30963:intron | 25.0% |
| !! | GAATCAAAGTTTTCATCTTT+TGG | - | chr2.2:5228172-5228191 | None:intergenic | 25.0% |
| !! | TATCATGATTGATTCATTTG+GGG | + | chr2.2:5228362-5228381 | MS.gene30963:intron | 25.0% |
| !!! | CTTTTGGAGATTTTAACAAA+AGG | - | chr2.2:5228156-5228175 | None:intergenic | 25.0% |
| AAATGAGAGAATCCGAATTT+AGG | - | chr2.2:5228543-5228562 | None:intergenic | 30.0% | |
| AAATTGAACAATAGAAGGCA+TGG | - | chr2.2:5229237-5229256 | None:intergenic | 30.0% | |
| AATGAGAGAATCCGAATTTA+GGG | - | chr2.2:5228542-5228561 | None:intergenic | 30.0% | |
| CTGAAGAAGACATTTAAAGA+AGG | + | chr2.2:5228828-5228847 | MS.gene30963:CDS | 30.0% | |
| GAGAATCTAAATCCTGAAAA+GGG | + | chr2.2:5228730-5228749 | MS.gene30963:intron | 30.0% | |
| GCAATAATGTGATTTGAACT+TGG | + | chr2.2:5228479-5228498 | MS.gene30963:intron | 30.0% | |
| GTATATGTTGGAACAGAATA+CGG | + | chr2.2:5228966-5228985 | MS.gene30963:CDS | 30.0% | |
| TATATGTTGGAACAGAATAC+GGG | + | chr2.2:5228967-5228986 | MS.gene30963:CDS | 30.0% | |
| TCCTAGAAAAGAATAATGAC+AGG | + | chr2.2:5228511-5228530 | MS.gene30963:intron | 30.0% | |
| TGAGAATCTAAATCCTGAAA+AGG | + | chr2.2:5228729-5228748 | MS.gene30963:intron | 30.0% | |
| TTGAGCTGTTTGATCAAAAT+CGG | + | chr2.2:5228596-5228615 | MS.gene30963:intron | 30.0% | |
| ! | ATTTAAAGAAGGTGCATACT+GGG | + | chr2.2:5228839-5228858 | MS.gene30963:CDS | 30.0% |
| ! | TCCTGTCATTATTCTTTTCT+AGG | - | chr2.2:5228515-5228534 | None:intergenic | 30.0% |
| AACAAGACCTCTCATTAACA+AGG | - | chr2.2:5228804-5228823 | None:intergenic | 35.0% | |
| ACAAGGAACAAAGCATATCA+TGG | - | chr2.2:5228787-5228806 | None:intergenic | 35.0% | |
| ACCTATCATATTGCTCGAAA+GGG | + | chr2.2:5228103-5228122 | MS.gene30963:CDS | 35.0% | |
| ACTGACATATCAAGATCAGA+TGG | - | chr2.2:5228677-5228696 | None:intergenic | 35.0% | |
| ACTGGGTAATTCTCTCAATA+GGG | + | chr2.2:5229015-5229034 | MS.gene30963:intron | 35.0% | |
| ATATGTTGGAACAGAATACG+GGG | + | chr2.2:5228968-5228987 | MS.gene30963:CDS | 35.0% | |
| ATGAGAGAATCCGAATTTAG+GGG | - | chr2.2:5228541-5228560 | None:intergenic | 35.0% | |
| CAAAAGGGTTATAGCAAAAG+TGG | - | chr2.2:5228140-5228159 | None:intergenic | 35.0% | |
| CTTTGTTCCTTGTTAATGAG+AGG | + | chr2.2:5228794-5228813 | MS.gene30963:intron | 35.0% | |
| GTACAGAAAAATGCCACATT+TGG | + | chr2.2:5229309-5229328 | MS.gene30963:intron | 35.0% | |
| TAATGTGATTTGAACTTGGG+AGG | + | chr2.2:5228483-5228502 | MS.gene30963:intron | 35.0% | |
| TACCTATCATATTGCTCGAA+AGG | + | chr2.2:5228102-5228121 | MS.gene30963:CDS | 35.0% | |
| TCTGTACATCAAAAGACCAA+GGG | - | chr2.2:5229296-5229315 | None:intergenic | 35.0% | |
| TTCTGTACATCAAAAGACCA+AGG | - | chr2.2:5229297-5229316 | None:intergenic | 35.0% | |
| TTGGTATGTATGCATCTTTG+AGG | + | chr2.2:5228457-5228476 | MS.gene30963:intron | 35.0% | |
| ! | ATTTTCCTTTCTACGCTTAC+AGG | + | chr2.2:5228930-5228949 | MS.gene30963:intron | 35.0% |
| ! | CATTTAAAGAAGGTGCATAC+TGG | + | chr2.2:5228838-5228857 | MS.gene30963:CDS | 35.0% |
| ! | TTTAAAGAAGGTGCATACTG+GGG | + | chr2.2:5228840-5228859 | MS.gene30963:CDS | 35.0% |
| !! | GTTGATGGTTTCTTGAAGAT+TGG | + | chr2.2:5227960-5227979 | MS.gene30963:CDS | 35.0% |
| !! | TAGAGAGAGCACTTTATTTC+TGG | + | chr2.2:5229086-5229105 | MS.gene30963:intron | 35.0% |
| AAGGCAGACAAGATTGTAGT+AGG | + | chr2.2:5229375-5229394 | MS.gene30963:CDS | 40.0% | |
| ACCCTTTCGAGCAATATGAT+AGG | - | chr2.2:5228107-5228126 | None:intergenic | 40.0% | |
| ACTGCTGCAGCATTCATAAA+TGG | + | chr2.2:5229423-5229442 | MS.gene30963:CDS | 40.0% | |
| ATCTAAATCCTGAAAAGGGC+AGG | + | chr2.2:5228734-5228753 | MS.gene30963:intron | 40.0% | |
| ATCTGCAGCCAACAATGAAA+AGG | + | chr2.2:5229356-5229375 | MS.gene30963:CDS | 40.0% | |
| CAGAAAAATGCCACATTTGG+AGG | + | chr2.2:5229312-5229331 | MS.gene30963:intron | 40.0% | |
| CTTCTAAACATGTCTGTTCC+AGG | + | chr2.2:5228277-5228296 | MS.gene30963:intron | 40.0% | |
| GACTGGGTAATTCTCTCAAT+AGG | + | chr2.2:5229014-5229033 | MS.gene30963:intron | 40.0% | |
| GCTATAGCTGGTGTATATGT+TGG | + | chr2.2:5228954-5228973 | MS.gene30963:CDS | 40.0% | |
| TCAAAAGACCAAGGGAACAA+CGG | - | chr2.2:5229288-5229307 | None:intergenic | 40.0% | |
| TCAAGAAACCATCAACAGTG+AGG | - | chr2.2:5227956-5227975 | None:intergenic | 40.0% | |
| TTCACGTAATCACACACTTG+CGG | - | chr2.2:5228706-5228725 | None:intergenic | 40.0% | |
| ! | CATGATTGATTCATTTGGGG+TGG | + | chr2.2:5228365-5228384 | MS.gene30963:intron | 40.0% |
| ! | CTTGTCTGCCTTTTCATTGT+TGG | - | chr2.2:5229367-5229386 | None:intergenic | 40.0% |
| !! | ATTGTAGTAGGTGCCATTAC+AGG | + | chr2.2:5229387-5229406 | MS.gene30963:CDS | 40.0% |
| !! | TTGTAGTAGGTGCCATTACA+GGG | + | chr2.2:5229388-5229407 | MS.gene30963:CDS | 40.0% |
| ATGCCTCATAGCAGCATTTC+AGG | + | chr2.2:5227873-5227892 | MS.gene30963:CDS | 45.0% | |
| CTGCAGCATTCATAAATGGC+TGG | + | chr2.2:5229427-5229446 | MS.gene30963:CDS | 45.0% | |
| CTTCTCAACCTCACTGTTGA+TGG | + | chr2.2:5227945-5227964 | MS.gene30963:CDS | 45.0% | |
| GACAGGAAAGCCCCTAAATT+CGG | + | chr2.2:5228528-5228547 | MS.gene30963:intron | 45.0% | |
| GATCCTGAAATGCTGCTATG+AGG | - | chr2.2:5227879-5227898 | None:intergenic | 45.0% | |
| GATTCTTACCGTTGTTCCCT+TGG | + | chr2.2:5229277-5229296 | MS.gene30963:intron | 45.0% | |
| GTCGATGTGGTCATTGACAT+GGG | + | chr2.2:5227915-5227934 | MS.gene30963:CDS | 45.0% | |
| TAGCTCCTGTAAGCGTAGAA+AGG | - | chr2.2:5228938-5228957 | None:intergenic | 45.0% | |
| TCAACAGTGAGGTTGAGAAG+TGG | - | chr2.2:5227945-5227964 | None:intergenic | 45.0% | |
| TCAATGACCACATCGACCTT+GGG | - | chr2.2:5227912-5227931 | None:intergenic | 45.0% | |
| TCACTACTTGAGACACTTCC+TGG | - | chr2.2:5228298-5228317 | None:intergenic | 45.0% | |
| TGAGAGAATTACCCAGTCTC+TGG | - | chr2.2:5229012-5229031 | None:intergenic | 45.0% | |
| !! | TGTAGTAGGTGCCATTACAG+GGG | + | chr2.2:5229389-5229408 | MS.gene30963:CDS | 45.0% |
| !!! | TTTTCAGGTTGCAGCCACAA+GGG | + | chr2.2:5228066-5228085 | MS.gene30963:intron | 45.0% |
| !!! | TTTTTCAGGTTGCAGCCACA+AGG | + | chr2.2:5228065-5228084 | MS.gene30963:intron | 45.0% |
| !! | AAAAATAAAAAATAAAAAGT+TGG | - | chr2.2:5228047-5228066 | None:intergenic | 5.0% |
| !! | ATATATAAATTACTTATAAT+TGG | - | chr2.2:5228438-5228457 | None:intergenic | 5.0% |
| !! | ATTATAAGTAATTTATATAT+TGG | + | chr2.2:5228438-5228457 | MS.gene30963:intron | 5.0% |
| !!! | ATAATAATATATATTGATTT+TGG | - | chr2.2:5228208-5228227 | None:intergenic | 5.0% |
| !!! | TTTATTTTTTATTTTTTTTC+AGG | + | chr2.2:5228051-5228070 | MS.gene30963:intron | 5.0% |
| ACGCTTACAGGAGCTATAGC+TGG | + | chr2.2:5228942-5228961 | MS.gene30963:intron | 50.0% | |
| AGGATCAGTGTCTTCTCCCA+AGG | + | chr2.2:5227893-5227912 | MS.gene30963:CDS | 50.0% | |
| GGTCGATGTGGTCATTGACA+TGG | + | chr2.2:5227914-5227933 | MS.gene30963:CDS | 50.0% | |
| GTCAATGACCACATCGACCT+TGG | - | chr2.2:5227913-5227932 | None:intergenic | 50.0% | |
| TGTCACTGCACCTCCAAATG+TGG | - | chr2.2:5229325-5229344 | None:intergenic | 50.0% | |
| TGTTGGAACAGAATACGGGG+TGG | + | chr2.2:5228971-5228990 | MS.gene30963:CDS | 50.0% | |
| ! | ACATTTGGAGGTGCAGTGAC+AGG | + | chr2.2:5229324-5229343 | MS.gene30963:CDS | 50.0% |
| ! | ATGGGATTCCTGCCCTTTTC+AGG | - | chr2.2:5228745-5228764 | None:intergenic | 50.0% |
| ! | ATTTGGAGGTGCAGTGACAG+GGG | + | chr2.2:5229326-5229345 | MS.gene30963:CDS | 50.0% |
| ! | CATTTGGAGGTGCAGTGACA+GGG | + | chr2.2:5229325-5229344 | MS.gene30963:CDS | 50.0% |
| ATCCTCTGCAAGTGCCCTTG+TGG | - | chr2.2:5228083-5228102 | None:intergenic | 55.0% | |
| CGCAATTGCAGCCCCTGTAA+TGG | - | chr2.2:5229403-5229422 | None:intergenic | 55.0% | |
| GAACAGAATACGGGGTGGAG+AGG | + | chr2.2:5228976-5228995 | MS.gene30963:CDS | 55.0% | |
| GTCTTCTCCCAAGGTCGATG+TGG | + | chr2.2:5227902-5227921 | MS.gene30963:CDS | 55.0% | |
| ! | TTACCCAGTCTCTGGTGCCA+CGG | - | chr2.2:5229004-5229023 | None:intergenic | 55.0% |
| GATCCGTGGCACCAGAGACT+GGG | + | chr2.2:5228998-5229017 | MS.gene30963:CDS | 60.0% | |
| !! | AGCCACAAGGGCACTTGCAG+AGG | + | chr2.2:5228078-5228097 | MS.gene30963:CDS | 60.0% |
| AGGTGCAGTGACAGGGGCTC+TGG | + | chr2.2:5229332-5229351 | MS.gene30963:CDS | 65.0% | |
| GGATCCGTGGCACCAGAGAC+TGG | + | chr2.2:5228997-5229016 | MS.gene30963:CDS | 65.0% | |
| TACGGGGTGGAGAGGATCCG+TGG | + | chr2.2:5228984-5229003 | MS.gene30963:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 5227873 | 5229458 | 5227873 | ID=MS.gene30963 |
| chr2.2 | mRNA | 5227873 | 5229458 | 5227873 | ID=MS.gene30963.t1;Parent=MS.gene30963 |
| chr2.2 | exon | 5227873 | 5227986 | 5227873 | ID=MS.gene30963.t1.exon1;Parent=MS.gene30963.t1 |
| chr2.2 | CDS | 5227873 | 5227986 | 5227873 | ID=cds.MS.gene30963.t1;Parent=MS.gene30963.t1 |
| chr2.2 | exon | 5228073 | 5228124 | 5228073 | ID=MS.gene30963.t1.exon2;Parent=MS.gene30963.t1 |
| chr2.2 | CDS | 5228073 | 5228124 | 5228073 | ID=cds.MS.gene30963.t1;Parent=MS.gene30963.t1 |
| chr2.2 | exon | 5228299 | 5228330 | 5228299 | ID=MS.gene30963.t1.exon3;Parent=MS.gene30963.t1 |
| chr2.2 | CDS | 5228299 | 5228330 | 5228299 | ID=cds.MS.gene30963.t1;Parent=MS.gene30963.t1 |
| chr2.2 | exon | 5228828 | 5228861 | 5228828 | ID=MS.gene30963.t1.exon4;Parent=MS.gene30963.t1 |
| chr2.2 | CDS | 5228828 | 5228861 | 5228828 | ID=cds.MS.gene30963.t1;Parent=MS.gene30963.t1 |
| chr2.2 | exon | 5228952 | 5229019 | 5228952 | ID=MS.gene30963.t1.exon5;Parent=MS.gene30963.t1 |
| chr2.2 | CDS | 5228952 | 5229019 | 5228952 | ID=cds.MS.gene30963.t1;Parent=MS.gene30963.t1 |
| chr2.2 | exon | 5229315 | 5229458 | 5229315 | ID=MS.gene30963.t1.exon6;Parent=MS.gene30963.t1 |
| chr2.2 | CDS | 5229315 | 5229458 | 5229315 | ID=cds.MS.gene30963.t1;Parent=MS.gene30963.t1 |
| Gene Sequence |
| Protein sequence |