Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060107.t1 | RHN52128.1 | 74.5 | 321 | 52 | 1 | 1 | 321 | 21 | 311 | 3.50E-120 | 441.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060107.t1 | Q9FJ81 | 58.3 | 228 | 87 | 4 | 95 | 321 | 54 | 274 | 1.7e-70 | 267.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060107.t1 | A0A396HHQ4 | 74.5 | 321 | 52 | 1 | 1 | 321 | 21 | 311 | 2.5e-120 | 441.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051860 | MS.gene060107 | 0.803593 | 3.24E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene09136 | 0.805374 | 1.38E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene36862 | 0.804876 | 1.75E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene36863 | 0.801072 | 1.07E-48 | -1.69E-46 |
| MS.gene060107 | MS.gene45108 | 0.814984 | 1.17E-51 | -1.69E-46 |
| MS.gene060107 | MS.gene50436 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene52065 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene57643 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene59730 | 0.809719 | 1.65E-50 | -1.69E-46 |
| MS.gene060107 | MS.gene63507 | 0.804163 | 2.46E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene68315 | 0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene060107 | MS.gene71456 | 0.815796 | 7.70E-52 | -1.69E-46 |
| MS.gene060107 | MS.gene76554 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene93892 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene060107 | MS.gene99622 | 0.801688 | 8.00E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060107.t1 | AT5G52110 | 50.338 | 296 | 105 | 6 | 27 | 321 | 20 | 274 | 3.36e-95 | 283 |
| MS.gene060107.t1 | AT5G52110 | 50.338 | 296 | 105 | 6 | 27 | 321 | 20 | 274 | 3.36e-95 | 283 |
Find 64 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCAGATTCTGAATTTC+AGG | 0.214586 | 6.2:-69448213 | MS.gene060107:intron |
| AGATGGATTGGTTATGCTTT+TGG | 0.224018 | 6.2:-69451627 | MS.gene060107:CDS |
| CTTCTCTTAAATCACTTTCT+TGG | 0.272678 | 6.2:-69451597 | MS.gene060107:CDS |
| GGTTGAGTTGGTGGAATTGT+TGG | 0.306640 | 6.2:+69451818 | None:intergenic |
| TCGATAGAAACTTGTAATAT+TGG | 0.317636 | 6.2:+69448152 | None:intergenic |
| AAATTCTTCTGGAACAGTTT+AGG | 0.323538 | 6.2:-69449479 | MS.gene060107:CDS |
| ATGAATCTTACTTACCTAGA+TGG | 0.344186 | 6.2:-69451644 | MS.gene060107:CDS |
| TTCATCGAAAGAAATTCTTC+TGG | 0.346850 | 6.2:-69449490 | MS.gene060107:CDS |
| TATGTAGAGAACAGAGGTTT+TGG | 0.349833 | 6.2:-69450578 | MS.gene060107:intron |
| CAACAATATCTTTGAAACCT+TGG | 0.361248 | 6.2:-69451926 | MS.gene060107:CDS |
| TGCATCTTGTGGAAAATATA+CGG | 0.375462 | 6.2:+69449416 | None:intergenic |
| TAAAGGGACTCACTCGCTTC+TGG | 0.376451 | 6.2:-69448180 | MS.gene060107:CDS |
| TCTGTTCTTCGCTTCACATT+GGG | 0.380169 | 6.2:-69451777 | MS.gene060107:CDS |
| GTTGAGTTGGTGGAATTGTT+GGG | 0.381196 | 6.2:+69451819 | None:intergenic |
| AATTTCTTTCGATGAATCAT+TGG | 0.381666 | 6.2:+69449497 | None:intergenic |
| AGATTCTGAATTTCAGGATC+TGG | 0.384998 | 6.2:-69448207 | MS.gene060107:CDS |
| CTCTGTTCTTCGCTTCACAT+TGG | 0.396058 | 6.2:-69451778 | MS.gene060107:CDS |
| ATATATGCGCAAGGGGCTAC+TGG | 0.408019 | 6.2:-69449527 | MS.gene060107:CDS |
| GCTATTACCTCTAAGCTTGT+TGG | 0.408859 | 6.2:+69448028 | None:intergenic |
| AATATTTGTTGCGCTTCATC+TGG | 0.410067 | 6.2:+69449847 | None:intergenic |
| CTGTTGTTGGGTTGAGTTGG+TGG | 0.410373 | 6.2:+69451809 | None:intergenic |
| CAGAGAGATTGAGCTGTTGT+TGG | 0.413325 | 6.2:+69451796 | None:intergenic |
| GTTGGCAACAGCTGCAATCC+AGG | 0.421141 | 6.2:+69448046 | None:intergenic |
| AGAAGCGAGTGAGTCCCTTT+AGG | 0.429284 | 6.2:+69448182 | None:intergenic |
| GAGCTGTTGTTGGGTTGAGT+TGG | 0.439886 | 6.2:+69451806 | None:intergenic |
| ACCAGTTGGATTTATTCTGC+TGG | 0.446677 | 6.2:-69448108 | MS.gene060107:CDS |
| TGCCGGCCTCAATGATTTGA+AGG | 0.455353 | 6.2:-69449442 | MS.gene060107:CDS |
| GCTGTTGCCAACAAGCTTAG+AGG | 0.457265 | 6.2:-69448035 | MS.gene060107:intron |
| GGTATAGTTGTTTGTTCCAC+CGG | 0.459040 | 6.2:+69449868 | None:intergenic |
| TTAGCATTAAAGACAGAGCC+TGG | 0.460642 | 6.2:-69448064 | MS.gene060107:CDS |
| GGACGGTCTGAAGGAAGATC+TGG | 0.460993 | 6.2:-69449803 | MS.gene060107:CDS |
| TGTTTGATTTCAGGGATACC+TGG | 0.467347 | 6.2:-69451672 | MS.gene060107:CDS |
| TTCAGGATCTGGTACCTAAA+GGG | 0.473957 | 6.2:-69448196 | MS.gene060107:CDS |
| TCTTACTTACCTAGATGGAT+TGG | 0.475217 | 6.2:-69451639 | MS.gene060107:CDS |
| GTCTGAAGGAAGATCTGGCT+TGG | 0.484196 | 6.2:-69449798 | MS.gene060107:CDS |
| TTGAGAAATTTACCAAGGTA+AGG | 0.490938 | 6.2:+69450523 | None:intergenic |
| TTTCAGGATCTGGTACCTAA+AGG | 0.493664 | 6.2:-69448197 | MS.gene060107:CDS |
| ACCAGCAGAATAAATCCAAC+TGG | 0.505118 | 6.2:+69448107 | None:intergenic |
| AAAGCATAACCAATCCATCT+AGG | 0.507839 | 6.2:+69451630 | None:intergenic |
| TTACCTTGGTAAATTTCTCA+AGG | 0.516569 | 6.2:-69450521 | MS.gene060107:intron |
| ATATTGTTAGGGTGCTCAAC+CGG | 0.520224 | 6.2:-69449887 | MS.gene060107:intron |
| AGAGAGATTGAGCTGTTGTT+GGG | 0.530917 | 6.2:+69451797 | None:intergenic |
| GTCCTTCAAATCATTGAGGC+CGG | 0.536776 | 6.2:+69449440 | None:intergenic |
| GAGTTGGTGGAATTGTTGGG+TGG | 0.538336 | 6.2:+69451822 | None:intergenic |
| CATGTGACATACCGCAGCTA+TGG | 0.538449 | 6.2:+69449744 | None:intergenic |
| AGATATAGCGGACGGTCTGA+AGG | 0.538525 | 6.2:-69449812 | MS.gene060107:CDS |
| TCAATTGTACTGCCTTACCT+TGG | 0.552367 | 6.2:-69450535 | MS.gene060107:CDS |
| TCATCGTTACCTGCATCTTG+TGG | 0.571951 | 6.2:+69449405 | None:intergenic |
| AATGCTAAATGCATATCTCA+TGG | 0.577761 | 6.2:+69448079 | None:intergenic |
| GTAAGGCAGTACAATTGAGA+AGG | 0.580325 | 6.2:+69450540 | None:intergenic |
| TTGTTGTTACGAGGAATCCA+AGG | 0.589798 | 6.2:+69451909 | None:intergenic |
| TTGTTATATGTAGAGAACAG+AGG | 0.594161 | 6.2:-69450584 | MS.gene060107:intron |
| TTCAAGGAGATATATGCGCA+AGG | 0.594214 | 6.2:-69449536 | MS.gene060107:CDS |
| AAAACAACGTTGTTGTTACG+AGG | 0.609688 | 6.2:+69451900 | None:intergenic |
| TCAAGGAGATATATGCGCAA+GGG | 0.612052 | 6.2:-69449535 | MS.gene060107:CDS |
| CAAGGAGATATATGCGCAAG+GGG | 0.620624 | 6.2:-69449534 | MS.gene060107:CDS |
| TAATACAAACGCCATAGCTG+CGG | 0.626421 | 6.2:-69449755 | MS.gene060107:intron |
| CGGAGTCCTTCAAATCATTG+AGG | 0.627452 | 6.2:+69449436 | None:intergenic |
| TTGTTAGGGTGCTCAACCGG+TGG | 0.631914 | 6.2:-69449884 | MS.gene060107:intron |
| AGGTTTCAAAGATATTGTTG+TGG | 0.632815 | 6.2:+69451929 | None:intergenic |
| TTACCTTGAGAAATTTACCA+AGG | 0.635163 | 6.2:+69450518 | None:intergenic |
| TGTCATGTCAACAGATATAG+CGG | 0.651701 | 6.2:-69449824 | MS.gene060107:CDS |
| AAGTAAGATTCATCAAAACC+AGG | 0.662494 | 6.2:+69451654 | None:intergenic |
| ATGTCAACAGATATAGCGGA+CGG | 0.684511 | 6.2:-69449820 | MS.gene060107:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTCAAATTATTAT+CGG | + | chr6.2:69449457-69449476 | None:intergenic | 10.0% |
| !! | AAACATATAAAGGTTAAATA+CGG | + | chr6.2:69449010-69449029 | None:intergenic | 15.0% |
| !! | ACTTGTAAAAAAACTAATTT+GGG | + | chr6.2:69449648-69449667 | None:intergenic | 15.0% |
| !! | TTATTGTTGAAAATATGATT+AGG | + | chr6.2:69451310-69451329 | None:intergenic | 15.0% |
| !!! | AATGTTTTTTTGTATTGATT+TGG | - | chr6.2:69447941-69447960 | MS.gene060107:intron | 15.0% |
| !!! | AATTGATATTTTCATTTCTA+AGG | - | chr6.2:69448915-69448934 | MS.gene060107:intron | 15.0% |
| !!! | TTAATTTTCCTTTTAGTATA+CGG | - | chr6.2:69449683-69449702 | MS.gene060107:intron | 15.0% |
| !! | AAAAAATATCACAACTGATA+TGG | + | chr6.2:69449369-69449388 | None:intergenic | 20.0% |
| !! | AACTAGAAAAGAAGAAAAAA+TGG | - | chr6.2:69450003-69450022 | MS.gene060107:intron | 20.0% |
| !! | ACATAGCTTAAAACAATTTA+TGG | - | chr6.2:69449557-69449576 | MS.gene060107:intron | 20.0% |
| !! | ACATATGCATATTTAAGAAA+GGG | + | chr6.2:69448126-69448145 | None:intergenic | 20.0% |
| !! | ATAAAAGATAAGACTGAAAA+AGG | - | chr6.2:69451856-69451875 | MS.gene060107:CDS | 20.0% |
| !! | CATTTGTGTTTGTTTATATT+AGG | + | chr6.2:69451889-69451908 | None:intergenic | 20.0% |
| !! | GAAAGAAATGTATACAATAT+TGG | + | chr6.2:69449161-69449180 | None:intergenic | 20.0% |
| !! | GACTTGTAAAAAAACTAATT+TGG | + | chr6.2:69449649-69449668 | None:intergenic | 20.0% |
| !! | GTATACTAAAAGGAAAATTA+AGG | + | chr6.2:69449684-69449703 | None:intergenic | 20.0% |
| !! | TAAAAGATAAGACTGAAAAA+GGG | - | chr6.2:69451857-69451876 | MS.gene060107:CDS | 20.0% |
| !! | TACATATGCATATTTAAGAA+AGG | + | chr6.2:69448127-69448146 | None:intergenic | 20.0% |
| !! | TATTAATTTAAACAAACCCA+TGG | - | chr6.2:69449955-69449974 | MS.gene060107:intron | 20.0% |
| !!! | AAAAAAATCAGTTTTTAGTG+TGG | - | chr6.2:69451830-69451849 | MS.gene060107:CDS | 20.0% |
| !!! | ATAAATTTTTTGTCAAACAG+TGG | - | chr6.2:69450389-69450408 | MS.gene060107:intron | 20.0% |
| !!! | GATGTTTTTTTTCTGTAAAA+GGG | - | chr6.2:69451146-69451165 | MS.gene060107:intron | 20.0% |
| ! | AAAAAACATCGTTGATGTTT+CGG | + | chr6.2:69451136-69451155 | None:intergenic | 25.0% |
| ! | AAAATTCTCAAGCATAAAAC+CGG | + | chr6.2:69450991-69451010 | None:intergenic | 25.0% |
| ! | AATTTCTTTCGATGAATCAT+TGG | + | chr6.2:69450153-69450172 | None:intergenic | 25.0% |
| ! | ACCTTAACATTGAAGAAATT+TGG | - | chr6.2:69448798-69448817 | MS.gene060107:intron | 25.0% |
| ! | AGGAAAAAAATTGAAAATGC+CGG | - | chr6.2:69450188-69450207 | MS.gene060107:intron | 25.0% |
| ! | AGTTCGAAATGTAAACAATT+TGG | + | chr6.2:69448320-69448339 | None:intergenic | 25.0% |
| ! | ATCAGATAAAATAATGAAGC+AGG | + | chr6.2:69451916-69451935 | None:intergenic | 25.0% |
| ! | ATTGGAATTGTTCGAAAATA+AGG | + | chr6.2:69450073-69450092 | None:intergenic | 25.0% |
| ! | CAAAAAAACATTCTCAAAAC+AGG | + | chr6.2:69447933-69447952 | None:intergenic | 25.0% |
| ! | CCTTAACATTGAAGAAATTT+GGG | - | chr6.2:69448799-69448818 | MS.gene060107:intron | 25.0% |
| ! | CTATGATTAAAGAGAAAATG+TGG | - | chr6.2:69449332-69449351 | MS.gene060107:intron | 25.0% |
| ! | CTTAACATTGAAGAAATTTG+GGG | - | chr6.2:69448800-69448819 | MS.gene060107:intron | 25.0% |
| ! | GAAAAGAAGAAAAAATGGTA+TGG | - | chr6.2:69450008-69450027 | MS.gene060107:intron | 25.0% |
| ! | GAAATGTAAACAATTTGGTT+CGG | + | chr6.2:69448315-69448334 | None:intergenic | 25.0% |
| ! | GTGAAACTTTAGATGTATAT+GGG | - | chr6.2:69448219-69448238 | MS.gene060107:intron | 25.0% |
| ! | TAAGACTTGATAGATATGTT+TGG | - | chr6.2:69449207-69449226 | MS.gene060107:intron | 25.0% |
| ! | TATTTCAGATTCTGAATTTC+AGG | - | chr6.2:69451434-69451453 | MS.gene060107:intron | 25.0% |
| ! | TCGATAGAAACTTGTAATAT+TGG | + | chr6.2:69451498-69451517 | None:intergenic | 25.0% |
| ! | TGTGAAACTTTAGATGTATA+TGG | - | chr6.2:69448218-69448237 | MS.gene060107:intron | 25.0% |
| ! | TTTAACCAGATTAATGTAGA+AGG | + | chr6.2:69451766-69451785 | None:intergenic | 25.0% |
| !! | AACCTTTATATGTTTTTCTG+TGG | - | chr6.2:69449015-69449034 | MS.gene060107:intron | 25.0% |
| !! | ATACCATAAGAGTATATATG+CGG | - | chr6.2:69450889-69450908 | MS.gene060107:intron | 25.0% |
| !! | ATGATATGAACTGTCTTTTA+TGG | + | chr6.2:69450651-69450670 | None:intergenic | 25.0% |
| !! | ATTCCAGATTTGTTTAACAA+AGG | + | chr6.2:69451405-69451424 | None:intergenic | 25.0% |
| !! | ATTTAAAACCTTGTATAGTG+TGG | + | chr6.2:69448769-69448788 | None:intergenic | 25.0% |
| !! | ATTTTATAGTTACATCAGCT+AGG | + | chr6.2:69451034-69451053 | None:intergenic | 25.0% |
| !! | ATTTTTGTTAGGGACTAATT+TGG | - | chr6.2:69448946-69448965 | MS.gene060107:intron | 25.0% |
| !! | TCTAAAGTTTCACATATGAA+TGG | + | chr6.2:69448212-69448231 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGACTAATTT+GGG | - | chr6.2:69448947-69448966 | MS.gene060107:intron | 25.0% |
| !!! | CGATGTTTTTTTTCTGTAAA+AGG | - | chr6.2:69451145-69451164 | MS.gene060107:intron | 25.0% |
| !!! | CTACACAAGTAATGTTTTTT+CGG | - | chr6.2:69448554-69448573 | MS.gene060107:intron | 25.0% |
| !!! | GTGTTTTTTGTTTGATTTCA+GGG | - | chr6.2:69447967-69447986 | MS.gene060107:intron | 25.0% |
| !!! | TATTGTTGTTGTAGATTTTG+TGG | + | chr6.2:69447787-69447806 | None:intergenic | 25.0% |
| !!! | TATTTTCATTTCTAAGGTCT+TGG | - | chr6.2:69448921-69448940 | MS.gene060107:intron | 25.0% |
| !!! | TGTGTTTTTTGTTTGATTTC+AGG | - | chr6.2:69447966-69447985 | MS.gene060107:intron | 25.0% |
| !!! | TGTTAGTGATTAACTTGTTA+CGG | - | chr6.2:69448413-69448432 | MS.gene060107:intron | 25.0% |
| AAATGACACTCAATATGAGA+CGG | - | chr6.2:69450948-69450967 | MS.gene060107:intron | 30.0% | |
| AAGTAAGATTCATCAAAACC+AGG | + | chr6.2:69447996-69448015 | None:intergenic | 30.0% | |
| AATGCTAAATGCATATCTCA+TGG | + | chr6.2:69451571-69451590 | None:intergenic | 30.0% | |
| AATTTAAACAAACCCATGGT+TGG | - | chr6.2:69449959-69449978 | MS.gene060107:intron | 30.0% | |
| AGAATTTGAACAAGTTGCTA+TGG | - | chr6.2:69450348-69450367 | MS.gene060107:intron | 30.0% | |
| AGGTTTCAAAGATATTGTTG+TGG | + | chr6.2:69447721-69447740 | None:intergenic | 30.0% | |
| ATGAATCTTACTTACCTAGA+TGG | - | chr6.2:69448003-69448022 | MS.gene060107:intron | 30.0% | |
| ATTTAGCAAACAGTTCAGTT+CGG | + | chr6.2:69448278-69448297 | None:intergenic | 30.0% | |
| CCCAAATTTCTTCAATGTTA+AGG | + | chr6.2:69448802-69448821 | None:intergenic | 30.0% | |
| CGTTGTATATTTCAAACACA+CGG | + | chr6.2:69451225-69451244 | None:intergenic | 30.0% | |
| CTTCTCTTAAATCACTTTCT+TGG | - | chr6.2:69448050-69448069 | MS.gene060107:CDS | 30.0% | |
| GACCACAGAAAAACATATAA+AGG | + | chr6.2:69449020-69449039 | None:intergenic | 30.0% | |
| GTACCTTTGTTAAACAAATC+TGG | - | chr6.2:69451399-69451418 | MS.gene060107:intron | 30.0% | |
| TAAAAATCAGCTGAACACAT+TGG | + | chr6.2:69450091-69450110 | None:intergenic | 30.0% | |
| TAGAACTTATCACATAATGC+AGG | + | chr6.2:69450709-69450728 | None:intergenic | 30.0% | |
| TGCATCTTGTGGAAAATATA+CGG | + | chr6.2:69450234-69450253 | None:intergenic | 30.0% | |
| TTAAGCCTTCTACATTAATC+TGG | - | chr6.2:69451758-69451777 | MS.gene060107:CDS | 30.0% | |
| TTACCTTGAGAAATTTACCA+AGG | + | chr6.2:69449132-69449151 | None:intergenic | 30.0% | |
| TTACCTTGGTAAATTTCTCA+AGG | - | chr6.2:69449126-69449145 | MS.gene060107:intron | 30.0% | |
| TTCATCGAAAGAAATTCTTC+TGG | - | chr6.2:69450157-69450176 | MS.gene060107:intron | 30.0% | |
| TTGAGAAATTTACCAAGGTA+AGG | + | chr6.2:69449127-69449146 | None:intergenic | 30.0% | |
| TTGTTATATGTAGAGAACAG+AGG | - | chr6.2:69449063-69449082 | MS.gene060107:intron | 30.0% | |
| ! | AAGAAATTTGGGGTTAAATC+TGG | - | chr6.2:69448810-69448829 | MS.gene060107:intron | 30.0% |
| ! | AGATTTTGTGGAACATGTTT+TGG | + | chr6.2:69447775-69447794 | None:intergenic | 30.0% |
| ! | ATTTTGTGGAACATGTTTTG+GGG | + | chr6.2:69447773-69447792 | None:intergenic | 30.0% |
| ! | CGTGTGTTTGAAATATACAA+CGG | - | chr6.2:69451223-69451242 | MS.gene060107:intron | 30.0% |
| ! | GATTTTGTGGAACATGTTTT+GGG | + | chr6.2:69447774-69447793 | None:intergenic | 30.0% |
| ! | TACCATAAGAGTATATATGC+GGG | - | chr6.2:69450890-69450909 | MS.gene060107:intron | 30.0% |
| ! | TTGGCTGATTTCTATAGAAA+TGG | - | chr6.2:69449978-69449997 | MS.gene060107:intron | 30.0% |
| !! | AAATTCTTCTGGAACAGTTT+AGG | - | chr6.2:69450168-69450187 | MS.gene060107:intron | 30.0% |
| !! | ACAACGGAGTTTGTTAATAT+AGG | - | chr6.2:69451239-69451258 | MS.gene060107:intron | 30.0% |
| !! | ACGAAAATTGATTTTTCTCC+TGG | - | chr6.2:69450533-69450552 | MS.gene060107:CDS | 30.0% |
| !! | AGGTCTTGGTAATTTTTGTT+AGG | - | chr6.2:69448935-69448954 | MS.gene060107:intron | 30.0% |
| !! | CAACAATATCTTTGAAACCT+TGG | - | chr6.2:69447721-69447740 | MS.gene060107:intron | 30.0% |
| !! | CTCATATTTAGTGTCGTTTA+AGG | - | chr6.2:69450748-69450767 | MS.gene060107:intron | 30.0% |
| !! | GGTCTTGGTAATTTTTGTTA+GGG | - | chr6.2:69448936-69448955 | MS.gene060107:intron | 30.0% |
| !! | GTTAGTGATTAACTTGTTAC+GGG | - | chr6.2:69448414-69448433 | MS.gene060107:intron | 30.0% |
| !! | GTTCAGCTGATTTTTATTCA+AGG | - | chr6.2:69450095-69450114 | MS.gene060107:intron | 30.0% |
| !! | TTAGTGATTAACTTGTTACG+GGG | - | chr6.2:69448415-69448434 | MS.gene060107:intron | 30.0% |
| !!! | CTCATATTGAGTGTCATTTT+TGG | + | chr6.2:69450947-69450966 | None:intergenic | 30.0% |
| AAAGCATAACCAATCCATCT+AGG | + | chr6.2:69448020-69448039 | None:intergenic | 35.0% | |
| AACCTCTGTTGGATTTCTTA+AGG | - | chr6.2:69448888-69448907 | MS.gene060107:intron | 35.0% | |
| AACTGCAAGTCATGCTAATA+AGG | + | chr6.2:69451361-69451380 | None:intergenic | 35.0% | |
| ACATGTGTGCTATGATGATT+AGG | - | chr6.2:69448523-69448542 | MS.gene060107:intron | 35.0% | |
| ACCCTAACAATATTCAGACA+TGG | + | chr6.2:69449753-69449772 | None:intergenic | 35.0% | |
| ACTTTAGATGTATATGGGCA+TGG | - | chr6.2:69448224-69448243 | MS.gene060107:intron | 35.0% | |
| AGATTCTGAATTTCAGGATC+TGG | - | chr6.2:69451440-69451459 | MS.gene060107:intron | 35.0% | |
| AGCCATGTCTGAATATTGTT+AGG | - | chr6.2:69449748-69449767 | MS.gene060107:intron | 35.0% | |
| AGTTATCCTAGAGAGTTCAT+TGG | - | chr6.2:69449395-69449414 | MS.gene060107:intron | 35.0% | |
| CTTATTCCAATGAACTCTCT+AGG | + | chr6.2:69449404-69449423 | None:intergenic | 35.0% | |
| GAACAAACCACTATTCTTTG+TGG | - | chr6.2:69450450-69450469 | MS.gene060107:intron | 35.0% | |
| GACACTAAATATGAGACAGA+GGG | + | chr6.2:69450743-69450762 | None:intergenic | 35.0% | |
| GCCATGTCTGAATATTGTTA+GGG | - | chr6.2:69449749-69449768 | MS.gene060107:intron | 35.0% | |
| GGAGCTTTCATAATTCAACA+AGG | - | chr6.2:69449228-69449247 | MS.gene060107:intron | 35.0% | |
| TATAGAAATCAGCCAACCAT+GGG | + | chr6.2:69449974-69449993 | None:intergenic | 35.0% | |
| TATATTGTGGAAGTTGCATG+TGG | - | chr6.2:69450285-69450304 | MS.gene060107:intron | 35.0% | |
| TCGGAAAGAAATGCAATTTC+TGG | + | chr6.2:69451117-69451136 | None:intergenic | 35.0% | |
| TCTCAGATGTTGATACATGT+TGG | - | chr6.2:69449505-69449524 | MS.gene060107:CDS | 35.0% | |
| TCTGTTAGACTCAGCTAAAT+CGG | + | chr6.2:69451179-69451198 | None:intergenic | 35.0% | |
| TCTTACTTACCTAGATGGAT+TGG | - | chr6.2:69448008-69448027 | MS.gene060107:intron | 35.0% | |
| TGTAGAATGAGAATCTCATG+TGG | - | chr6.2:69451083-69451102 | MS.gene060107:intron | 35.0% | |
| TGTCATGTCAACAGATATAG+CGG | - | chr6.2:69449823-69449842 | MS.gene060107:CDS | 35.0% | |
| TTCCCGCATATATACTCTTA+TGG | + | chr6.2:69450895-69450914 | None:intergenic | 35.0% | |
| TTTGAGCTCCGTATACTAAA+AGG | + | chr6.2:69449694-69449713 | None:intergenic | 35.0% | |
| ! | AAAACAACGTTGTTGTTACG+AGG | + | chr6.2:69447750-69447769 | None:intergenic | 35.0% |
| ! | AATATTTGTTGCGCTTCATC+TGG | + | chr6.2:69449803-69449822 | None:intergenic | 35.0% |
| ! | ACTGATTCACAAAAACCAGT+TGG | - | chr6.2:69451525-69451544 | MS.gene060107:intron | 35.0% |
| ! | ATGTAGAGAACAGAGGTTTT+GGG | - | chr6.2:69449070-69449089 | MS.gene060107:intron | 35.0% |
| ! | GGAAGGAGTATAATTTAGTC+CGG | - | chr6.2:69450969-69450988 | MS.gene060107:intron | 35.0% |
| ! | GTATATTTTCCACAAGATGC+AGG | - | chr6.2:69450233-69450252 | MS.gene060107:intron | 35.0% |
| ! | GTCAGTGTTTCATAGGTTTT+CGG | + | chr6.2:69449427-69449446 | None:intergenic | 35.0% |
| ! | TATGTAGAGAACAGAGGTTT+TGG | - | chr6.2:69449069-69449088 | MS.gene060107:intron | 35.0% |
| !! | TCAAACAGTGGTTCTAGTAA+CGG | - | chr6.2:69450401-69450420 | MS.gene060107:intron | 35.0% |
| !!! | AACTGGTTTTTGTGAATCAG+TGG | + | chr6.2:69451526-69451545 | None:intergenic | 35.0% |
| !!! | AGATGGATTGGTTATGCTTT+TGG | - | chr6.2:69448020-69448039 | MS.gene060107:intron | 35.0% |
| AAGACAGCGTTGTCAAATAG+CGG | - | chr6.2:69448585-69448604 | MS.gene060107:intron | 40.0% | |
| ACAATATTCAGACATGGCTG+AGG | + | chr6.2:69449747-69449766 | None:intergenic | 40.0% | |
| ACCAGCAGAATAAATCCAAC+TGG | + | chr6.2:69451543-69451562 | None:intergenic | 40.0% | |
| ACCAGTTGGATTTATTCTGC+TGG | - | chr6.2:69451539-69451558 | MS.gene060107:intron | 40.0% | |
| AGAGAGATTGAGCTGTTGTT+GGG | + | chr6.2:69447853-69447872 | None:intergenic | 40.0% | |
| AGATGTATATGGGCATGGTT+CGG | - | chr6.2:69448229-69448248 | MS.gene060107:intron | 40.0% | |
| ATGAGTCAGAAAGCTTAAGG+AGG | + | chr6.2:69448480-69448499 | None:intergenic | 40.0% | |
| CGACACTAAATATGAGACAG+AGG | + | chr6.2:69450744-69450763 | None:intergenic | 40.0% | |
| CTATAGAAATCAGCCAACCA+TGG | + | chr6.2:69449975-69449994 | None:intergenic | 40.0% | |
| GCACTCTAACTTCAAAACGA+TGG | + | chr6.2:69449536-69449555 | None:intergenic | 40.0% | |
| GCTATAGTACTATAGCACAC+TGG | - | chr6.2:69448712-69448731 | MS.gene060107:intron | 40.0% | |
| GCTATTACCTCTAAGCTTGT+TGG | + | chr6.2:69451622-69451641 | None:intergenic | 40.0% | |
| GGAATGAGTCAGAAAGCTTA+AGG | + | chr6.2:69448483-69448502 | None:intergenic | 40.0% | |
| GGTATAGTTGTTTGTTCCAC+CGG | + | chr6.2:69449782-69449801 | None:intergenic | 40.0% | |
| GTAAGGCAGTACAATTGAGA+AGG | + | chr6.2:69449110-69449129 | None:intergenic | 40.0% | |
| GTCCTTAAGAAATCCAACAG+AGG | + | chr6.2:69448893-69448912 | None:intergenic | 40.0% | |
| TAATACAAACGCCATAGCTG+CGG | - | chr6.2:69449892-69449911 | MS.gene060107:intron | 40.0% | |
| TCAAGGAGATATATGCGCAA+GGG | - | chr6.2:69450112-69450131 | MS.gene060107:intron | 40.0% | |
| TCAATTGTACTGCCTTACCT+TGG | - | chr6.2:69449112-69449131 | MS.gene060107:intron | 40.0% | |
| TCTGTTCTTCGCTTCACATT+GGG | - | chr6.2:69447870-69447889 | MS.gene060107:intron | 40.0% | |
| TGGTCAAACGCGAAAAATAG+CGG | + | chr6.2:69448749-69448768 | None:intergenic | 40.0% | |
| TGTCTACGTCAGTGTTTCAT+AGG | + | chr6.2:69449434-69449453 | None:intergenic | 40.0% | |
| TTAGCATTAAAGACAGAGCC+TGG | - | chr6.2:69451583-69451602 | MS.gene060107:CDS | 40.0% | |
| TTCAAGGAGATATATGCGCA+AGG | - | chr6.2:69450111-69450130 | MS.gene060107:intron | 40.0% | |
| TTCAGGATCTGGTACCTAAA+GGG | - | chr6.2:69451451-69451470 | MS.gene060107:intron | 40.0% | |
| TTTCAGGATCTGGTACCTAA+AGG | - | chr6.2:69451450-69451469 | MS.gene060107:intron | 40.0% | |
| ! | ATATTGTTAGGGTGCTCAAC+CGG | - | chr6.2:69449760-69449779 | MS.gene060107:CDS | 40.0% |
| ! | ATGTCAACAGATATAGCGGA+CGG | - | chr6.2:69449827-69449846 | MS.gene060107:CDS | 40.0% |
| ! | TGTTTGATTTCAGGGATACC+TGG | - | chr6.2:69447975-69447994 | MS.gene060107:intron | 40.0% |
| ! | TTGTTGTTACGAGGAATCCA+AGG | + | chr6.2:69447741-69447760 | None:intergenic | 40.0% |
| !! | GTTGAGTTGGTGGAATTGTT+GGG | + | chr6.2:69447831-69447850 | None:intergenic | 40.0% |
| AGCTTTCTGACTCATTCCAC+TGG | - | chr6.2:69448485-69448504 | MS.gene060107:intron | 45.0% | |
| AGTCAGAAAGCTTAAGGAGG+AGG | + | chr6.2:69448477-69448496 | None:intergenic | 45.0% | |
| CAAGGAGATATATGCGCAAG+GGG | - | chr6.2:69450113-69450132 | MS.gene060107:intron | 45.0% | |
| CAGAGAGATTGAGCTGTTGT+TGG | + | chr6.2:69447854-69447873 | None:intergenic | 45.0% | |
| CAGCTAGGAAAGAGACGAAA+GGG | + | chr6.2:69451019-69451038 | None:intergenic | 45.0% | |
| CATAGCACACATGTCGTCAA+AGG | + | chr6.2:69448517-69448536 | None:intergenic | 45.0% | |
| CCTCAACTTTGGTTGTGTTG+CGG | - | chr6.2:69448842-69448861 | MS.gene060107:intron | 45.0% | |
| CGGAGTCCTTCAAATCATTG+AGG | + | chr6.2:69450214-69450233 | None:intergenic | 45.0% | |
| CTCTGTTCTTCGCTTCACAT+TGG | - | chr6.2:69447869-69447888 | MS.gene060107:intron | 45.0% | |
| GACACTCAATATGAGACGGA+AGG | - | chr6.2:69450952-69450971 | MS.gene060107:intron | 45.0% | |
| GAGACGAGAAAAACCTCTGT+TGG | - | chr6.2:69448877-69448896 | MS.gene060107:intron | 45.0% | |
| GCAAACAGTTCAGTTCGGTT+CGG | + | chr6.2:69448273-69448292 | None:intergenic | 45.0% | |
| GCAGTGAGCAAGTGTTAGAT+GGG | + | chr6.2:69450629-69450648 | None:intergenic | 45.0% | |
| GCGTTTGACCACACTATACA+AGG | - | chr6.2:69448758-69448777 | MS.gene060107:intron | 45.0% | |
| GCTTTCTGACTCATTCCACT+GGG | - | chr6.2:69448486-69448505 | MS.gene060107:intron | 45.0% | |
| GTCCTTCAAATCATTGAGGC+CGG | + | chr6.2:69450210-69450229 | None:intergenic | 45.0% | |
| GTGAATGTAGCCACATGTGT+CGG | - | chr6.2:69449482-69449501 | MS.gene060107:CDS | 45.0% | |
| TAGGAAAGAGACGAAAGGGA+GGG | + | chr6.2:69451015-69451034 | None:intergenic | 45.0% | |
| TCAGCTAGGAAAGAGACGAA+AGG | + | chr6.2:69451020-69451039 | None:intergenic | 45.0% | |
| TCATCGTTACCTGCATCTTG+TGG | + | chr6.2:69450245-69450264 | None:intergenic | 45.0% | |
| TCGCGAACCACAAAGAATAG+TGG | + | chr6.2:69450460-69450479 | None:intergenic | 45.0% | |
| ! | AAAGCTTAAGGAGGAGGTAC+AGG | + | chr6.2:69448471-69448490 | None:intergenic | 45.0% |
| ! | GGCTTTTGTGACCTCAACTT+TGG | - | chr6.2:69448831-69448850 | MS.gene060107:intron | 45.0% |
| !! | GGTTGAGTTGGTGGAATTGT+TGG | + | chr6.2:69447832-69447851 | None:intergenic | 45.0% |
| !!! | AGAGGTTTTGGGTCTGTCTT+TGG | - | chr6.2:69449081-69449100 | MS.gene060107:intron | 45.0% |
| !! | AATTATAATAATATATATTG+TGG | - | chr6.2:69450272-69450291 | MS.gene060107:intron | 5.0% |
| AAACCAAACCGAACTGCCAC+GGG | - | chr6.2:69448350-69448369 | MS.gene060107:intron | 50.0% | |
| ACACTAATTCTCTCTCCCCG+TGG | + | chr6.2:69448369-69448388 | None:intergenic | 50.0% | |
| AGAAGCGAGTGAGTCCCTTT+AGG | + | chr6.2:69451468-69451487 | None:intergenic | 50.0% | |
| AGCTTCTAGCAGAGTTAGCC+AGG | + | chr6.2:69450554-69450573 | None:intergenic | 50.0% | |
| ATATATGCGCAAGGGGCTAC+TGG | - | chr6.2:69450120-69450139 | MS.gene060107:intron | 50.0% | |
| CAAACCAAACCGAACTGCCA+CGG | - | chr6.2:69448349-69448368 | MS.gene060107:intron | 50.0% | |
| CATAGCTGCGGTATGTCACA+TGG | - | chr6.2:69449904-69449923 | MS.gene060107:intron | 50.0% | |
| CATGTGACATACCGCAGCTA+TGG | + | chr6.2:69449906-69449925 | None:intergenic | 50.0% | |
| CCGCAACACAACCAAAGTTG+AGG | + | chr6.2:69448845-69448864 | None:intergenic | 50.0% | |
| CTAGGAAAGAGACGAAAGGG+AGG | + | chr6.2:69451016-69451035 | None:intergenic | 50.0% | |
| CTTTGGTTGTGTTGCGGTTG+TGG | - | chr6.2:69448848-69448867 | MS.gene060107:intron | 50.0% | |
| GCTGTTGCCAACAAGCTTAG+AGG | - | chr6.2:69451612-69451631 | MS.gene060107:CDS | 50.0% | |
| GGCAGTGAGCAAGTGTTAGA+TGG | + | chr6.2:69450630-69450649 | None:intergenic | 50.0% | |
| GTCTGAAGGAAGATCTGGCT+TGG | - | chr6.2:69449849-69449868 | MS.gene060107:CDS | 50.0% | |
| TAAAGGGACTCACTCGCTTC+TGG | - | chr6.2:69451467-69451486 | MS.gene060107:intron | 50.0% | |
| TGCCGGCCTCAATGATTTGA+AGG | - | chr6.2:69450205-69450224 | MS.gene060107:intron | 50.0% | |
| TGGTTCGCGATTGACAACAC+TGG | - | chr6.2:69450470-69450489 | MS.gene060107:intron | 50.0% | |
| ! | ACATCTGAGACCGACACATG+TGG | + | chr6.2:69449495-69449514 | None:intergenic | 50.0% |
| ! | TCGTCAAAGGTGTAACCCAG+TGG | + | chr6.2:69448504-69448523 | None:intergenic | 50.0% |
| !! | AGATATAGCGGACGGTCTGA+AGG | - | chr6.2:69449835-69449854 | MS.gene060107:CDS | 50.0% |
| !! | ATATGGGCATGGTTCGGTTC+AGG | - | chr6.2:69448235-69448254 | MS.gene060107:intron | 50.0% |
| !! | CTGTTGTTGGGTTGAGTTGG+TGG | + | chr6.2:69447841-69447860 | None:intergenic | 50.0% |
| !! | GAGCTGTTGTTGGGTTGAGT+TGG | + | chr6.2:69447844-69447863 | None:intergenic | 50.0% |
| !! | GAGTTGGTGGAATTGTTGGG+TGG | + | chr6.2:69447828-69447847 | None:intergenic | 50.0% |
| AACCAAACCGAACTGCCACG+GGG | - | chr6.2:69448351-69448370 | MS.gene060107:intron | 55.0% | |
| GGACGGTCTGAAGGAAGATC+TGG | - | chr6.2:69449844-69449863 | MS.gene060107:CDS | 55.0% | |
| GTTGGCAACAGCTGCAATCC+AGG | + | chr6.2:69451604-69451623 | None:intergenic | 55.0% | |
| TGTGTTGCGGTTGTGGAGAG+TGG | - | chr6.2:69448855-69448874 | MS.gene060107:intron | 55.0% | |
| ! | TTGTTAGGGTGCTCAACCGG+TGG | - | chr6.2:69449763-69449782 | MS.gene060107:CDS | 55.0% |
| !! | CGTGGCAGTTCGGTTTGGTT+TGG | + | chr6.2:69448351-69448370 | None:intergenic | 55.0% |
| TCTCTCTCCCCGTGGCAGTT+CGG | + | chr6.2:69448361-69448380 | None:intergenic | 60.0% | |
| CTCCCCGTGGCAGTTCGGTT+TGG | + | chr6.2:69448356-69448375 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 69447705 | 69451964 | 69447705 | ID=MS.gene060107 |
| chr6.2 | mRNA | 69447705 | 69451964 | 69447705 | ID=MS.gene060107.t1;Parent=MS.gene060107 |
| chr6.2 | exon | 69451563 | 69451964 | 69451563 | ID=MS.gene060107.t1.exon1;Parent=MS.gene060107.t1 |
| chr6.2 | CDS | 69451563 | 69451964 | 69451563 | ID=cds.MS.gene060107.t1;Parent=MS.gene060107.t1 |
| chr6.2 | exon | 69450522 | 69450593 | 69450522 | ID=MS.gene060107.t1.exon2;Parent=MS.gene060107.t1 |
| chr6.2 | CDS | 69450522 | 69450593 | 69450522 | ID=cds.MS.gene060107.t1;Parent=MS.gene060107.t1 |
| chr6.2 | exon | 69449756 | 69449899 | 69449756 | ID=MS.gene060107.t1.exon3;Parent=MS.gene060107.t1 |
| chr6.2 | CDS | 69449756 | 69449899 | 69449756 | ID=cds.MS.gene060107.t1;Parent=MS.gene060107.t1 |
| chr6.2 | exon | 69449415 | 69449568 | 69449415 | ID=MS.gene060107.t1.exon4;Parent=MS.gene060107.t1 |
| chr6.2 | CDS | 69449415 | 69449568 | 69449415 | ID=cds.MS.gene060107.t1;Parent=MS.gene060107.t1 |
| chr6.2 | exon | 69448036 | 69448227 | 69448036 | ID=MS.gene060107.t1.exon5;Parent=MS.gene060107.t1 |
| chr6.2 | CDS | 69448036 | 69448227 | 69448036 | ID=cds.MS.gene060107.t1;Parent=MS.gene060107.t1 |
| chr6.2 | exon | 69447705 | 69447709 | 69447705 | ID=MS.gene060107.t1.exon6;Parent=MS.gene060107.t1 |
| chr6.2 | CDS | 69447705 | 69447709 | 69447705 | ID=cds.MS.gene060107.t1;Parent=MS.gene060107.t1 |
| Gene Sequence |
| Protein sequence |
