AlfalfaGEDB | MS.gene52065

M. sativa cultivar XinJiangDaYe / MS.gene52065

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF13812.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52065.t1	XP_024634361.1	91.1	732	65	0	1	732	61	792	0.00E+00	1369.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52065.t1	Q3E6Q1	61.3	732	283	0	1	732	78	809	4.4e-276	951.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52065.t1	A0A396IK20	91.1	732	65	0	1	732	61	792	0.0e+00	1369.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049151	MS.gene52065	0.82296	1.79E-53	-1.69E-46
MS.gene049153	MS.gene52065	0.805771	1.14E-49	-1.69E-46
MS.gene049297	MS.gene52065	0.816661	4.93E-52	-1.69E-46
MS.gene049346	MS.gene52065	0.812293	4.56E-51	-1.69E-46
MS.gene049378	MS.gene52065	0.833262	5.90E-56	-1.69E-46
MS.gene049491	MS.gene52065	0.800408	1.46E-48	-1.69E-46
MS.gene049758	MS.gene52065	0.86649	2.74E-65	-1.69E-46
MS.gene049910	MS.gene52065	0.848148	7.37E-60	-1.69E-46
MS.gene049915	MS.gene52065	0.804987	1.66E-49	-1.69E-46
MS.gene050128	MS.gene52065	0.809186	2.14E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004015	MS.gene52065	PPI
MS.gene009835	MS.gene52065	PPI
MS.gene009837	MS.gene52065	PPI
MS.gene017495	MS.gene52065	PPI
MS.gene021002	MS.gene52065	PPI
MS.gene021142	MS.gene52065	PPI
MS.gene029804	MS.gene52065	PPI
MS.gene035055	MS.gene52065	PPI
MS.gene051468	MS.gene52065	PPI
MS.gene054709	MS.gene52065	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52065.t1	MTR_3g011940	94.274	716	41	0	1	716	61	776	0.0	1412
MS.gene52065.t1	MTR_3g011940	32.976	373	250	0	99	471	58	430	1.14e-57	211
MS.gene52065.t1	MTR_3g011940	34.266	286	188	0	196	481	54	339	1.70e-45	175
MS.gene52065.t1	MTR_3g011950	75.307	733	180	1	1	732	78	810	0.0	1155
MS.gene52065.t1	MTR_3g011950	29.124	491	340	4	64	554	43	525	3.29e-57	209
MS.gene52065.t1	MTR_2g035620	40.132	760	426	8	1	732	129	887	0.0	576
MS.gene52065.t1	MTR_2g035620	28.188	596	387	10	36	598	63	650	1.95e-60	219
MS.gene52065.t1	MTR_2g035620	32.678	407	258	8	127	524	52	451	1.45e-51	193
MS.gene52065.t1	MTR_4g011570	41.507	730	425	2	1	730	143	870	0.0	572
MS.gene52065.t1	MTR_4g011570	34.056	461	292	5	64	518	103	557	2.08e-71	250

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52065.t1	AT1G11290	61.339	732	283	0	1	732	78	809	0.0	959
MS.gene52065.t1	AT1G11290	30.181	497	338	5	62	558	41	528	2.07e-65	232
MS.gene52065.t1	AT4G18750	37.875	734	454	2	1	732	138	871	0.0	572
MS.gene52065.t1	AT4G18750	29.810	473	314	5	64	527	100	563	1.48e-65	233
MS.gene52065.t1	AT4G18750	27.130	446	307	6	158	594	93	529	3.05e-47	180
MS.gene52065.t1	AT3G57430	41.232	747	400	12	14	732	155	890	0.0	570
MS.gene52065.t1	AT3G57430	29.616	547	358	11	29	556	68	606	3.99e-64	230
MS.gene52065.t1	AT3G57430	31.281	406	267	7	127	524	65	466	6.05e-53	197
MS.gene52065.t1	AT4G30700	39.452	730	436	5	6	732	66	792	0.0	567
MS.gene52065.t1	AT4G30700	29.120	443	308	4	1	440	163	602	2.03e-56	206

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Find 142 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTAGAGAGATTCAT+GGG	0.592905	3.3:-7560546	MS.gene52065:CDS
AAAGGCGGATTCTGTTACGT+TGG	0.503412	3.3:-7560305	MS.gene52065:CDS
AAATGTACTTAGTGGCATCG+TGG	0.702828	3.3:+7558685	None:intergenic
AACAAATCCAAAGCTCTCTC+TGG	0.435473	3.3:+7560352	None:intergenic
AAGAACGGCATGTGATAACA+TGG	0.656936	3.3:-7559502	MS.gene52065:CDS
AAGAATGGAATCTGTTCTTG+TGG	0.616666	3.3:-7558606	MS.gene52065:CDS
AAGAGATGCCTATCAAACCA+GGG	0.683886	3.3:-7559205	MS.gene52065:CDS
AAGCTTCCTCGCAGTTCGAA+TGG	0.512560	3.3:+7559538	None:intergenic
AAGGGTATCCACAAAACTCC+AGG	0.564335	3.3:-7558993	MS.gene52065:CDS
AAGTACATTTCACTTGTGAC+AGG	0.496753	3.3:-7558672	MS.gene52065:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTGATGATAGATGGATA+CGG	-	chr3.3:7559883-7559902	MS.gene52065:CDS	30.0%
AGAAGAAAACAAATGTCACA+TGG	-	chr3.3:7559557-7559576	MS.gene52065:CDS	30.0%
AGAATTGGAAAGTCTATTCA+TGG	-	chr3.3:7559118-7559137	MS.gene52065:CDS	30.0%
ATTGACATGTTTGCAAAATG+TGG	-	chr3.3:7559799-7559818	MS.gene52065:CDS	30.0%
GAGATTCGTTCATAAATTAG+TGG	-	chr3.3:7559429-7559448	MS.gene52065:CDS	30.0%
TAAGCAAAATCATACACAAC+TGG	+	chr3.3:7558761-7558780	None:intergenic	30.0%
TATCATAGGATGCAAAATGA+TGG	-	chr3.3:7558728-7558747	MS.gene52065:CDS	30.0%
TCAAAATGAATGCGTTAATG+AGG	-	chr3.3:7559603-7559622	MS.gene52065:CDS	30.0%
TGTATATGTACTTTGAATGC+GGG	-	chr3.3:7559194-7559213	MS.gene52065:CDS	30.0%
TTATAGTACGTGATTTACGT+AGG	-	chr3.3:7560721-7560740	MS.gene52065:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	7558593	7560791	7558593	ID=MS.gene52065
chr3.3	mRNA	7558593	7560791	7558593	ID=MS.gene52065.t1;Parent=MS.gene52065
chr3.3	exon	7558593	7560791	7558593	ID=MS.gene52065.t1.exon1;Parent=MS.gene52065.t1
chr3.3	CDS	7558593	7560791	7558593	ID=cds.MS.gene52065.t1;Parent=MS.gene52065.t1

Gene Sequence

>MS.gene52065

ATGTTCTTCAAACATGGCTGCATCAATGAAGCATCTCTTGTCTTTGACACTGTTGAACACAAACAAGATGTTCTTTACCATGCCATGCTCAAAGGGTATGCAAAAAACTCATCTTTATGTGATGCTTTGTGTTTTTATCATAGGATGCAAAATGATGGTGTTAGGCCAGTTGTGTATGATTTTGCTTATTTGTTGCAATTGTGTGGGAAAAAATTTGAACTTGAAAAGGGTAGAGAGATTCATGGGCAGGTGATAGTTAATGGGTTTGAGTATGATTTGTTTTCTATGATTGGTGTTATGGATTTTTATGTGAAATGTGGGGAGGTCAATGATGCGTATAAGGTTTTTGAGAGATTGTCGGAGAAGGATTTGGTGTCTTGGACTAGTTTGGTTGCAGGATATGCGCAGAATGGTTATCCAGAGAGAGCTTTGGATTTGTTTCTTCGGATGCAGGAAGCTGGCTTAAAGGCGGATTCTGTTACGTTGGTTAGTGTTTTGCCAGCTGTGGCGGATATTAAGGATTTGAGAATTGGAAAGTCTATTCATGGTTATGCTCTTAGATTTGGATTTGAGTCGAAGGTTAGTTTTACAAATGCGCTTTTGTATATGTACTTTGAATGCGGGTGTGAAAGGATTGCGAGGTTGGTTTTTGAGGGGATGAGTAACAAGTGTGTTGTTTCGTGGAATACGATGATTGATGGTTATGCACAAATAGGAAAATCTGAAGAAGCGTTTGCTACTTTTTTGAAGATGTTGGATGAAGGAGTTGAACCTACACGAGTTGCAATTATGGCGGCTTTGACCGCTTGTGCTGATTTAGGTGATCTTGAACGGGGGAGATTCGTTCATAAATTAGTGGATCGACTGAAACTTGATTTTGAAGTGTCGATTATGAACTCTTTAATATCCATGTATTCGAAGTGTAAGAGAGTTGATGTTGCAGTCTCAATCTTTGATAATTTGAAGAAGAAAACAAATGTCACATGGAATGCCATGATATTAGGTTATGCTCAAAATGAATGCGTTAATGAGGCTTTAAATCTGTTTTGTGTGATGCAATCTCAAGAAGTTAAACCTGACTGCTTTACTTTAGTGGCTGTAATTACTGCTCTTGCTGATTTATCGGTTAACCGGATGGCCAAGTGGATTCATGGACTTGCAATAAGGACTTTTTTGGACAATGATGTCTATGTTGCTACTGCTCTTATTGACATGTTTGCAAAATGTGGAGCCATTCGAACTGCGAGGAAGCTTTTCGACATGATGCAAGAACGGCATGTGATAACATGGAATGTGATGATAGATGGATACGGCACACATGGCCTTGGAAAAGAAGCTATTGATCTATTTGACAATATGCAGAAAGAAGCTGTTATGCCAAATGATACAACATTTTTGTCTGTCATCTCAGCTTGTAGTCACTCGGGTTTCGTGGAAGAGGGCCTCCATTTCTTTCAAAGCATGAAGGAAGATTATGGCTGGGAGCCTTCAATGGATCACTATAGTGCTGTGGTCGATCTCCTTGGCCGTGCCGGAAAGTTACATGGTGCTTGGAATTTAATTCAAGAGATGCCTATCAAACCAGGGATTACCGTTTTAGGTGCAATGCTAGGTGCTTGCAAAATTCATAAAAATGTCGAATTGGGCGAAAAAGCTGCAGACAAACTATTTGAGTTAGATCCAGATGAGGGTGGGTATCATGTTCTGCTAGCAAACATGTATGCCTCTGCATCAATGTGGGACAAAGCGGCCAAGGTGAGAACAGCCATGGAGAAAAAGGGTATCCACAAAACTCCAGGCTGTAGTTTTGTTGAATTGAGAAATGAAGTTCACACATTCTACTCAGGAAGTACGAATCATCCTCAAGCGAAGAAAATCTACGCTTTTCTCGAGGCTCTTGGAGATAAGATCAGGGATGCTGGTTACATACCTGACACCAATTCTATTCTTGACGTGGAGGAAAATGTGAAGGAGCAATTGCTCAGTAGCCATAGTGAGAGGCTTGCTATTGCATTTGGACTTTTAAACACAAACCACGGTACACCAATACATATAAGGAAGAATCTAAGAGTTTGTGGAGACTGCCACGATGCCACTAAGTACATTTCACTTGTGACAGGGAGGGAAATTATAGTACGTGATTTACGTAGGTTCCATCATTTTAAGAATGGAATCTGTTCTTGTGGTGATTATTGGTGA

Protein sequence

>MS.gene52065.t1

MFFKHGCINEASLVFDTVEHKQDVLYHAMLKGYAKNSSLCDALCFYHRMQNDGVRPVVYDFAYLLQLCGKKFELEKGREIHGQVIVNGFEYDLFSMIGVMDFYVKCGEVNDAYKVFERLSEKDLVSWTSLVAGYAQNGYPERALDLFLRMQEAGLKADSVTLVSVLPAVADIKDLRIGKSIHGYALRFGFESKVSFTNALLYMYFECGCERIARLVFEGMSNKCVVSWNTMIDGYAQIGKSEEAFATFLKMLDEGVEPTRVAIMAALTACADLGDLERGRFVHKLVDRLKLDFEVSIMNSLISMYSKCKRVDVAVSIFDNLKKKTNVTWNAMILGYAQNECVNEALNLFCVMQSQEVKPDCFTLVAVITALADLSVNRMAKWIHGLAIRTFLDNDVYVATALIDMFAKCGAIRTARKLFDMMQERHVITWNVMIDGYGTHGLGKEAIDLFDNMQKEAVMPNDTTFLSVISACSHSGFVEEGLHFFQSMKEDYGWEPSMDHYSAVVDLLGRAGKLHGAWNLIQEMPIKPGITVLGAMLGACKIHKNVELGEKAADKLFELDPDEGGYHVLLANMYASASMWDKAAKVRTAMEKKGIHKTPGCSFVELRNEVHTFYSGSTNHPQAKKIYAFLEALGDKIRDAGYIPDTNSILDVEENVKEQLLSSHSERLAIAFGLLNTNHGTPIHIRKNLRVCGDCHDATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW