Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50436.t1 | XP_013455017.1 | 97.6 | 255 | 6 | 0 | 1 | 255 | 1 | 255 | 2.30E-138 | 501.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50436.t1 | O80934 | 78.3 | 254 | 55 | 0 | 2 | 255 | 72 | 325 | 8.0e-116 | 417.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50436.t1 | A0A072UT49 | 97.6 | 255 | 6 | 0 | 1 | 255 | 1 | 255 | 1.6e-138 | 501.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene50436 | 0.840727 | 7.31E-58 | -1.69E-46 |
| MS.gene049151 | MS.gene50436 | 0.836739 | 7.84E-57 | -1.69E-46 |
| MS.gene049153 | MS.gene50436 | 0.832255 | 1.05E-55 | -1.69E-46 |
| MS.gene049260 | MS.gene50436 | 0.855438 | 6.31E-62 | -1.69E-46 |
| MS.gene049297 | MS.gene50436 | 0.813702 | 2.24E-51 | -1.69E-46 |
| MS.gene04933 | MS.gene50436 | 0.815961 | 7.07E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene50436 | 0.852102 | 5.75E-61 | -1.69E-46 |
| MS.gene049758 | MS.gene50436 | 0.881408 | 2.46E-70 | -1.69E-46 |
| MS.gene049910 | MS.gene50436 | 0.817316 | 3.51E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene50436 | 0.862085 | 6.51E-64 | -1.69E-46 |
| MS.gene050227 | MS.gene50436 | 0.857569 | 1.49E-62 | -1.69E-46 |
| MS.gene050228 | MS.gene50436 | 0.870449 | 1.45E-66 | -1.69E-46 |
| MS.gene050301 | MS.gene50436 | 0.834689 | 2.59E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene50436 | -0.842895 | 1.95E-58 | -1.69E-46 |
| MS.gene050438 | MS.gene50436 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene50436 | 0.809104 | 2.23E-50 | -1.69E-46 |
| MS.gene050558 | MS.gene50436 | 0.844718 | 6.36E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene50436 | -0.861158 | 1.25E-63 | -1.69E-46 |
| MS.gene050642 | MS.gene50436 | 0.837826 | 4.13E-57 | -1.69E-46 |
| MS.gene050719 | MS.gene50436 | 0.80692 | 6.51E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene50436 | 0.806079 | 9.79E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene50436 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene50436 | 0.844272 | 8.38E-59 | -1.69E-46 |
| MS.gene050763 | MS.gene50436 | 0.846725 | 1.81E-59 | -1.69E-46 |
| MS.gene050787 | MS.gene50436 | 0.800011 | 1.76E-48 | -1.69E-46 |
| MS.gene050820 | MS.gene50436 | 0.802704 | 4.95E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene50436 | -0.843199 | 1.62E-58 | -1.69E-46 |
| MS.gene051257 | MS.gene50436 | 0.820943 | 5.25E-53 | -1.69E-46 |
| MS.gene051535 | MS.gene50436 | 0.804366 | 2.24E-49 | -1.69E-46 |
| MS.gene051662 | MS.gene50436 | 0.819636 | 1.05E-52 | -1.69E-46 |
| MS.gene051663 | MS.gene50436 | 0.855508 | 6.02E-62 | -1.69E-46 |
| MS.gene051860 | MS.gene50436 | 0.873739 | 1.16E-67 | -1.69E-46 |
| MS.gene051983 | MS.gene50436 | 0.874267 | 7.72E-68 | -1.69E-46 |
| MS.gene052077 | MS.gene50436 | 0.826617 | 2.46E-54 | -1.69E-46 |
| MS.gene052176 | MS.gene50436 | 0.829662 | 4.54E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene50436 | 0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene052207 | MS.gene50436 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene052309 | MS.gene50436 | -0.845499 | 3.91E-59 | -1.69E-46 |
| MS.gene052340 | MS.gene50436 | 0.81132 | 7.43E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene50436 | 0.802116 | 6.53E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene50436 | 0.802068 | 6.68E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene50436 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene50436 | 0.827129 | 1.85E-54 | -1.69E-46 |
| MS.gene053577 | MS.gene50436 | 0.825977 | 3.49E-54 | -1.69E-46 |
| MS.gene053811 | MS.gene50436 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene50436 | 0.889273 | 2.81E-73 | -1.69E-46 |
| MS.gene054379 | MS.gene50436 | 0.849499 | 3.11E-60 | -1.69E-46 |
| MS.gene054473 | MS.gene50436 | 0.822479 | 2.32E-53 | -1.69E-46 |
| MS.gene054542 | MS.gene50436 | 0.824871 | 6.38E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene50436 | 0.89724 | 1.70E-76 | -1.69E-46 |
| MS.gene054942 | MS.gene50436 | 0.838287 | 3.15E-57 | -1.69E-46 |
| MS.gene054983 | MS.gene50436 | 0.811579 | 6.52E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene50436 | 0.805428 | 1.34E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene50436 | 0.804351 | 2.25E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene50436 | 0.834442 | 2.99E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene50436 | 0.82013 | 8.07E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene50436 | 0.802884 | 4.54E-49 | -1.69E-46 |
| MS.gene055666 | MS.gene50436 | 0.820156 | 7.96E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene50436 | 0.810061 | 1.39E-50 | -1.69E-46 |
| MS.gene055712 | MS.gene50436 | 0.814133 | 1.80E-51 | -1.69E-46 |
| MS.gene055859 | MS.gene50436 | 0.830819 | 2.37E-55 | -1.69E-46 |
| MS.gene056069 | MS.gene50436 | -0.814129 | 1.80E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene50436 | 0.805505 | 1.29E-49 | -1.69E-46 |
| MS.gene056447 | MS.gene50436 | 0.822878 | 1.87E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene50436 | 0.801841 | 7.44E-49 | -1.69E-46 |
| MS.gene056875 | MS.gene50436 | 0.845313 | 4.39E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene50436 | 0.870961 | 9.82E-67 | -1.69E-46 |
| MS.gene057121 | MS.gene50436 | 0.824214 | 9.11E-54 | -1.69E-46 |
| MS.gene057260 | MS.gene50436 | 0.804673 | 1.93E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene50436 | 0.820705 | 5.96E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene50436 | 0.811972 | 5.36E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene50436 | 0.818771 | 1.65E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene50436 | 0.859821 | 3.17E-63 | -1.69E-46 |
| MS.gene05761 | MS.gene50436 | 0.827844 | 1.25E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene50436 | 0.800737 | 1.25E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene50436 | 0.816462 | 5.46E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene50436 | 0.827678 | 1.37E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene50436 | 0.842458 | 2.55E-58 | -1.69E-46 |
| MS.gene058139 | MS.gene50436 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene50436 | 0.821788 | 3.35E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene50436 | 0.815356 | 9.64E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene50436 | 0.811758 | 5.97E-51 | -1.69E-46 |
| MS.gene058710 | MS.gene50436 | 0.835021 | 2.14E-56 | -1.69E-46 |
| MS.gene058749 | MS.gene50436 | 0.821634 | 3.64E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene50436 | 0.8092 | 2.13E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene50436 | 0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene50436 | 0.829351 | 5.40E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene50436 | 0.848551 | 5.70E-60 | -1.69E-46 |
| MS.gene059285 | MS.gene50436 | 0.820265 | 7.52E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene50436 | 0.821723 | 3.47E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene50436 | 0.81839 | 2.01E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene50436 | 0.847372 | 1.21E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene50436 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene059899 | MS.gene50436 | 0.854458 | 1.21E-61 | -1.69E-46 |
| MS.gene060084 | MS.gene50436 | 0.842073 | 3.23E-58 | -1.69E-46 |
| MS.gene060107 | MS.gene50436 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene50436 | -0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene50436 | 0.800527 | 1.38E-48 | -1.69E-46 |
| MS.gene060476 | MS.gene50436 | 0.819476 | 1.14E-52 | -1.69E-46 |
| MS.gene060480 | MS.gene50436 | 0.842575 | 2.38E-58 | -1.69E-46 |
| MS.gene060495 | MS.gene50436 | 0.811732 | 6.04E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene50436 | 0.812146 | 4.91E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene50436 | 0.815927 | 7.19E-52 | -1.69E-46 |
| MS.gene061002 | MS.gene50436 | 0.800388 | 1.48E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene50436 | 0.821021 | 5.04E-53 | -1.69E-46 |
| MS.gene061071 | MS.gene50436 | 0.813813 | 2.12E-51 | -1.69E-46 |
| MS.gene061114 | MS.gene50436 | -0.815467 | 9.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50436.t1 | MTR_4g021815 | 97.647 | 255 | 6 | 0 | 1 | 255 | 1 | 255 | 0.0 | 511 |
| MS.gene50436.t1 | MTR_7g062140 | 81.569 | 255 | 47 | 0 | 1 | 255 | 75 | 329 | 6.80e-158 | 441 |
| MS.gene50436.t1 | MTR_8g010700 | 30.508 | 236 | 125 | 8 | 35 | 248 | 100 | 318 | 9.57e-25 | 100 |
| MS.gene50436.t1 | MTR_4g115730 | 28.731 | 268 | 143 | 12 | 4 | 254 | 16 | 252 | 4.91e-14 | 70.1 |
| MS.gene50436.t1 | MTR_4g068970 | 47.297 | 74 | 38 | 1 | 107 | 179 | 183 | 256 | 5.32e-14 | 71.6 |
| MS.gene50436.t1 | MTR_4g115730 | 28.731 | 268 | 143 | 12 | 4 | 254 | 56 | 292 | 5.82e-14 | 70.5 |
| MS.gene50436.t1 | MTR_8g010600 | 33.621 | 116 | 58 | 3 | 153 | 253 | 22 | 133 | 5.52e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50436.t1 | AT2G37660 | 79.839 | 248 | 50 | 0 | 8 | 255 | 78 | 325 | 4.54e-153 | 429 |
| MS.gene50436.t1 | AT5G02240 | 80.645 | 248 | 48 | 0 | 8 | 255 | 6 | 253 | 1.03e-150 | 421 |
| MS.gene50436.t1 | AT4G31530 | 31.405 | 242 | 127 | 8 | 35 | 254 | 100 | 324 | 3.64e-24 | 99.0 |
| MS.gene50436.t1 | AT4G31530 | 31.963 | 219 | 111 | 7 | 35 | 232 | 100 | 301 | 2.18e-22 | 94.4 |
| MS.gene50436.t1 | AT2G34460 | 30.588 | 255 | 139 | 11 | 9 | 251 | 49 | 277 | 1.15e-18 | 83.6 |
| MS.gene50436.t1 | AT3G18890 | 28.910 | 211 | 113 | 6 | 9 | 198 | 84 | 278 | 7.49e-13 | 68.2 |
Find 70 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTGTTGGTTGGGTCTA+TGG | 0.227152 | 4.4:-79747318 | MS.gene50436:CDS |
| TAACCATCCTTTGAACAGTT+TGG | 0.309070 | 4.4:-79747282 | MS.gene50436:CDS |
| CAAACCACTGTCCTTGTTAC+TGG | 0.319736 | 4.4:-79749797 | MS.gene50436:CDS |
| GAAGAATATCTGTCCAATTC+TGG | 0.321510 | 4.4:-79747042 | MS.gene50436:CDS |
| AACCATCCTTTGAACAGTTT+GGG | 0.323678 | 4.4:-79747281 | MS.gene50436:CDS |
| CCTTTGAACAGTTTGGGAAA+TGG | 0.335160 | 4.4:-79747275 | MS.gene50436:CDS |
| GAAGAAAGCAAACAGAAAAT+TGG | 0.341940 | 4.4:-79748262 | MS.gene50436:CDS |
| GCATCTGTACCTTGAATTGC+AGG | 0.352388 | 4.4:+79748187 | None:intergenic |
| AAACTCAGGCCTTCCACCTT+TGG | 0.364997 | 4.4:+79748111 | None:intergenic |
| CGTGTAAGGAACACCAGAAT+TGG | 0.372936 | 4.4:+79747029 | None:intergenic |
| CCAAACCTCTGGCAATATAT+TGG | 0.375239 | 4.4:+79748293 | None:intergenic |
| TATGATAGGTTGACTGGATT+GGG | 0.379614 | 4.4:-79747968 | MS.gene50436:intron |
| AAACTGTTCAAAGGATGGTT+AGG | 0.380370 | 4.4:+79747284 | None:intergenic |
| ATTGTGTTGGTTGGGTCTAT+GGG | 0.382254 | 4.4:-79747317 | MS.gene50436:CDS |
| CCAATATATTGCCAGAGGTT+TGG | 0.384643 | 4.4:-79748293 | MS.gene50436:CDS |
| TTGATAAAGAAGGAGGTGTT+CGG | 0.404923 | 4.4:-79746216 | MS.gene50436:CDS |
| AATTGCAGGAACAATGCTTT+CGG | 0.413542 | 4.4:+79748201 | None:intergenic |
| AAAGCCTTGAAGTCCTTTGT+TGG | 0.422367 | 4.4:+79745236 | None:intergenic |
| CAAACCCAGGTTTCATTTGT+GGG | 0.437050 | 4.4:+79748140 | None:intergenic |
| AATAGCATTAGCACCTGTTC+GGG | 0.437397 | 4.4:+79748067 | None:intergenic |
| GTTGGTTCACCTGCACCCTC+AGG | 0.437593 | 4.4:+79745254 | None:intergenic |
| TAATAGCATTAGCACCTGTT+CGG | 0.437611 | 4.4:+79748066 | None:intergenic |
| ATTCAATTCAATTCAATGGC+AGG | 0.439004 | 4.4:-79749827 | None:intergenic |
| ATATGATAGGTTGACTGGAT+TGG | 0.441585 | 4.4:-79747969 | MS.gene50436:intron |
| TTTGGGAAATGGAAATATAC+TGG | 0.444100 | 4.4:-79747264 | MS.gene50436:intron |
| AGCATTGTTCCTGCAATTCA+AGG | 0.445346 | 4.4:-79748196 | MS.gene50436:CDS |
| TCAAACCCAGGTTTCATTTG+TGG | 0.465991 | 4.4:+79748139 | None:intergenic |
| TGTAGCAGAAGTCTGCGTTC+AGG | 0.467309 | 4.4:-79746128 | MS.gene50436:intron |
| TGAACCAACAAAGGACTTCA+AGG | 0.468496 | 4.4:-79745240 | MS.gene50436:CDS |
| ACTGTCCTTGTTACTGGTGC+TGG | 0.468562 | 4.4:-79749791 | MS.gene50436:CDS |
| TTCTGATCTAACCAAACCTC+TGG | 0.473775 | 4.4:+79748282 | None:intergenic |
| TTGACAGGCACTAAATTATG+AGG | 0.476024 | 4.4:-79745312 | MS.gene50436:intron |
| TGATAAAGAAGGAGGTGTTC+GGG | 0.478613 | 4.4:-79746215 | MS.gene50436:CDS |
| TGAAGCATATTGTGTTGGTT+GGG | 0.478830 | 4.4:-79747325 | MS.gene50436:CDS |
| CTATAAACAGCTAAGGCTGC+AGG | 0.498326 | 4.4:-79747350 | MS.gene50436:intron |
| TCAGGCCTTCCACCTTTGGT+TGG | 0.499708 | 4.4:+79748115 | None:intergenic |
| TGATGGTTCATATCCCGAAC+AGG | 0.500943 | 4.4:-79748080 | MS.gene50436:intron |
| TTCCCAAACTGTTCAAAGGA+TGG | 0.501526 | 4.4:+79747279 | None:intergenic |
| AACTGTTCAAAGGATGGTTA+GGG | 0.504635 | 4.4:+79747285 | None:intergenic |
| CCATTTCCCAAACTGTTCAA+AGG | 0.506648 | 4.4:+79747275 | None:intergenic |
| GTGTTCCTTACACGATCATA+AGG | 0.509941 | 4.4:-79747020 | MS.gene50436:intron |
| GTGTACCTTATGATCGTGTA+AGG | 0.517539 | 4.4:+79747015 | None:intergenic |
| GTGAAGCATATTGTGTTGGT+TGG | 0.518358 | 4.4:-79747326 | MS.gene50436:CDS |
| GGTGTTCGGGAACTCATTGT+AGG | 0.524165 | 4.4:-79746202 | MS.gene50436:CDS |
| GCATCAAAACCTGAGGGTGC+AGG | 0.524749 | 4.4:-79745263 | MS.gene50436:CDS |
| TTATGAGGAGACTAAATTCA+AGG | 0.530143 | 4.4:-79745297 | MS.gene50436:CDS |
| GTGTTGGTTGGGTCTATGGG+TGG | 0.540126 | 4.4:-79747314 | MS.gene50436:CDS |
| CATTGTTGATTCAGACCTGG+TGG | 0.546083 | 4.4:-79746244 | MS.gene50436:intron |
| GCTGTCCCACAAATGAAACC+TGG | 0.549601 | 4.4:-79748145 | MS.gene50436:CDS |
| GAAAGCAAACAGAAAATTGG+TGG | 0.572686 | 4.4:-79748259 | MS.gene50436:CDS |
| CCTTTGGTTGGATCAAACCC+AGG | 0.573204 | 4.4:+79748127 | None:intergenic |
| GGTGGCTTGCTTGATAAAGA+AGG | 0.575976 | 4.4:-79746226 | MS.gene50436:CDS |
| ACTGGTGCTGGTGGTCGCAC+AGG | 0.581423 | 4.4:-79749779 | MS.gene50436:intron |
| TCTTTATCAAGCAAGCCACC+AGG | 0.585110 | 4.4:+79746229 | None:intergenic |
| CCATCATCAAAATAAAACTC+AGG | 0.589184 | 4.4:+79748097 | None:intergenic |
| ACTTCTGCTACATCAGCTCT+AGG | 0.589981 | 4.4:+79746139 | None:intergenic |
| TCGGGAACTCATTGTAGGAA+AGG | 0.591768 | 4.4:-79746197 | MS.gene50436:CDS |
| GGGTTTGATCCAACCAAAGG+TGG | 0.593347 | 4.4:-79748124 | MS.gene50436:CDS |
| TTGATCCAACCAAAGGTGGA+AGG | 0.601871 | 4.4:-79748120 | MS.gene50436:CDS |
| CGCGACCAATATATTGCCAG+AGG | 0.611486 | 4.4:-79748298 | MS.gene50436:CDS |
| GACCACCAGCACCAGTAACA+AGG | 0.614518 | 4.4:+79749786 | None:intergenic |
| GTCCTTGTTACTGGTGCTGG+TGG | 0.619985 | 4.4:-79749788 | MS.gene50436:CDS |
| CTGTCCCACAAATGAAACCT+GGG | 0.620890 | 4.4:-79748144 | MS.gene50436:CDS |
| AGGAGTGAAGCATATTGTGT+TGG | 0.636269 | 4.4:-79747330 | MS.gene50436:CDS |
| GGGTGCAGGTGAACCAACAA+AGG | 0.644031 | 4.4:-79745249 | MS.gene50436:CDS |
| GACCTAGCATCAAAACCTGA+GGG | 0.644948 | 4.4:-79745269 | MS.gene50436:CDS |
| CCTGGGTTTGATCCAACCAA+AGG | 0.647766 | 4.4:-79748127 | MS.gene50436:CDS |
| TGACCTAGCATCAAAACCTG+AGG | 0.657872 | 4.4:-79745270 | MS.gene50436:CDS |
| AGCACCAGTAACAAGGACAG+TGG | 0.717449 | 4.4:+79749793 | None:intergenic |
| GGCTTGCTTGATAAAGAAGG+AGG | 0.735031 | 4.4:-79746223 | MS.gene50436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTAATTTACACAAA+GGG | + | chr4.4:79746023-79746042 | None:intergenic | 10.0% |
| !!! | ATTTTCAATTTTATTTGAAT+TGG | - | chr4.4:79745385-79745404 | MS.gene50436:intron | 10.0% |
| !!! | TTTTCAATTTTATTTGAATT+GGG | - | chr4.4:79745386-79745405 | MS.gene50436:intron | 10.0% |
| !! | ATCAATATCAAAAATAGAAT+CGG | - | chr4.4:79749614-79749633 | MS.gene50436:intron | 15.0% |
| !!! | AAAATGTTATCATTCTATTT+TGG | + | chr4.4:79747876-79747895 | None:intergenic | 15.0% |
| !!! | ATAAAAACTTATGCATTTTT+AGG | + | chr4.4:79747178-79747197 | None:intergenic | 15.0% |
| !!! | ATTATGAAACATTTTTATCT+TGG | - | chr4.4:79748308-79748327 | MS.gene50436:CDS | 15.0% |
| !!! | GAAATTTTTAATTTACACAA+AGG | + | chr4.4:79746024-79746043 | None:intergenic | 15.0% |
| !!! | TTTCAATTTTATTTGAATTG+GGG | - | chr4.4:79745387-79745406 | MS.gene50436:intron | 15.0% |
| !! | AAACAGATCCTTATATTATT+AGG | + | chr4.4:79747309-79747328 | None:intergenic | 20.0% |
| !! | AAATGAAGTAACTAAAGTAT+TGG | + | chr4.4:79747797-79747816 | None:intergenic | 20.0% |
| !! | ACAAATTTGACTAAAAAAAG+TGG | + | chr4.4:79749289-79749308 | None:intergenic | 20.0% |
| !! | ATACCAAACCTAATAATATA+AGG | - | chr4.4:79747298-79747317 | MS.gene50436:CDS | 20.0% |
| !! | ATATTATCTCTTATAGAACT+TGG | - | chr4.4:79748916-79748935 | MS.gene50436:intron | 20.0% |
| !! | CATTTGTAACAATATTTGAA+AGG | + | chr4.4:79746081-79746100 | None:intergenic | 20.0% |
| !! | GAAAATAAAATAAGCGTAAA+GGG | + | chr4.4:79746118-79746137 | None:intergenic | 20.0% |
| !! | TAAAAAACTTTCAGAATACT+TGG | - | chr4.4:79748236-79748255 | MS.gene50436:CDS | 20.0% |
| !! | TACCAAAAATAGTACTTATT+AGG | - | chr4.4:79746326-79746345 | MS.gene50436:intron | 20.0% |
| !! | TATTATCTCTTATAGAACTT+GGG | - | chr4.4:79748917-79748936 | MS.gene50436:intron | 20.0% |
| !! | TATTCTACTTCAATAATAGT+CGG | + | chr4.4:79746205-79746224 | None:intergenic | 20.0% |
| !! | TGAAAATAAAATAAGCGTAA+AGG | + | chr4.4:79746119-79746138 | None:intergenic | 20.0% |
| !! | TTTAATCATTGAAATTCTAG+TGG | - | chr4.4:79749027-79749046 | MS.gene50436:intron | 20.0% |
| !!! | AACTCATATATGTTTTAACA+TGG | + | chr4.4:79748041-79748060 | None:intergenic | 20.0% |
| !!! | AATAGTGATTTGTTCAAATT+CGG | + | chr4.4:79748380-79748399 | None:intergenic | 20.0% |
| !!! | CAGATACGTTTTAAAAAAAA+TGG | + | chr4.4:79747405-79747424 | None:intergenic | 20.0% |
| !!! | GCTTATTTTATTTTCAAACA+TGG | - | chr4.4:79746123-79746142 | MS.gene50436:intron | 20.0% |
| !!! | TATATTTTCAAAAGCTGAAT+CGG | - | chr4.4:79749645-79749664 | MS.gene50436:intron | 20.0% |
| !!! | TTATTTTCAAACATGGAAAA+AGG | - | chr4.4:79746130-79746149 | MS.gene50436:CDS | 20.0% |
| !!! | TTCCTAATAAGTACTATTTT+TGG | + | chr4.4:79746331-79746350 | None:intergenic | 20.0% |
| ! | AAATGTTTGTAGGAAGTAAA+CGG | - | chr4.4:79747546-79747565 | MS.gene50436:intron | 25.0% |
| ! | AACCTATCATATGAAAAAGT+AGG | + | chr4.4:79747043-79747062 | None:intergenic | 25.0% |
| ! | ACAAAGATTTAAGCTTGATA+AGG | - | chr4.4:79746155-79746174 | MS.gene50436:CDS | 25.0% |
| ! | ACACTATAGATTTGTATTGA+TGG | + | chr4.4:79749188-79749207 | None:intergenic | 25.0% |
| ! | GAAAATGATAACAGAAAACA+TGG | + | chr4.4:79747337-79747356 | None:intergenic | 25.0% |
| ! | GATCCTTATATTATTAGGTT+TGG | + | chr4.4:79747304-79747323 | None:intergenic | 25.0% |
| ! | GTATATTCAAAATAGTTTCC+TGG | + | chr4.4:79748181-79748200 | None:intergenic | 25.0% |
| ! | TAACATACCAAAATGTTACT+GGG | - | chr4.4:79745651-79745670 | MS.gene50436:intron | 25.0% |
| ! | TACAAAACATTGTCAATAAG+TGG | - | chr4.4:79748421-79748440 | MS.gene50436:intron | 25.0% |
| ! | TAGCGATACATTTATTACTT+GGG | + | chr4.4:79746428-79746447 | None:intergenic | 25.0% |
| ! | TATAGTTTCATCTTAATTGC+AGG | - | chr4.4:79747938-79747957 | MS.gene50436:intron | 25.0% |
| ! | TGAAAACTGAAAATGTTTGT+AGG | - | chr4.4:79747536-79747555 | MS.gene50436:intron | 25.0% |
| ! | TGCAATATTATCTTGATATC+CGG | - | chr4.4:79748203-79748222 | MS.gene50436:CDS | 25.0% |
| ! | TTAACATACCAAAATGTTAC+TGG | - | chr4.4:79745650-79745669 | MS.gene50436:intron | 25.0% |
| ! | TTAGCGATACATTTATTACT+TGG | + | chr4.4:79746429-79746448 | None:intergenic | 25.0% |
| ! | TTGAATCTTGAATTACTTTG+AGG | - | chr4.4:79749346-79749365 | MS.gene50436:intron | 25.0% |
| ! | TTTACCAGAAATCATTAGTT+GGG | + | chr4.4:79747583-79747602 | None:intergenic | 25.0% |
| ! | TTTATCTCTATAAACAGCTA+AGG | - | chr4.4:79747663-79747682 | MS.gene50436:intron | 25.0% |
| !! | ACTATAGATTTGTATTGATG+GGG | + | chr4.4:79749186-79749205 | None:intergenic | 25.0% |
| !! | ATTGATTATACTAGTCTAGT+TGG | + | chr4.4:79749566-79749585 | None:intergenic | 25.0% |
| !! | CACTATAGATTTGTATTGAT+GGG | + | chr4.4:79749187-79749206 | None:intergenic | 25.0% |
| !! | GAAGAACTATTTTATGAATC+GGG | + | chr4.4:79749477-79749496 | None:intergenic | 25.0% |
| !! | GGAAGAACTATTTTATGAAT+CGG | + | chr4.4:79749478-79749497 | None:intergenic | 25.0% |
| !! | GTGACTTTGATTTAAAATCT+TGG | + | chr4.4:79745720-79745739 | None:intergenic | 25.0% |
| !! | TCTTGGATTAGATATTTCTA+CGG | + | chr4.4:79745703-79745722 | None:intergenic | 25.0% |
| !! | TGAGAATTTTCTCAAATTGA+AGG | - | chr4.4:79745422-79745441 | MS.gene50436:intron | 25.0% |
| !! | TGTTATCATTTTCACTTCAA+CGG | - | chr4.4:79747344-79747363 | MS.gene50436:intron | 25.0% |
| !! | TTCATTTTAAATTGCCAACA+AGG | + | chr4.4:79747520-79747539 | None:intergenic | 25.0% |
| !! | TTGAAGTTTTCAATCTTCTT+AGG | - | chr4.4:79747214-79747233 | MS.gene50436:intron | 25.0% |
| !!! | AGTTTTTTAACTCAAACAAC+CGG | + | chr4.4:79748225-79748244 | None:intergenic | 25.0% |
| !!! | CTATTTTTGGTATAGTAGAT+TGG | + | chr4.4:79746318-79746337 | None:intergenic | 25.0% |
| !!! | GAACTCTTTCTTTAAAATCT+TGG | - | chr4.4:79745868-79745887 | MS.gene50436:intron | 25.0% |
| !!! | GCTTTTGAAAATATAGTCAT+TGG | + | chr4.4:79749640-79749659 | None:intergenic | 25.0% |
| !!! | TCTAGGAATAGTTTTAGTTT+CGG | + | chr4.4:79748867-79748886 | None:intergenic | 25.0% |
| !!! | TCTTTTCAGTTTTGTTTTCA+CGG | - | chr4.4:79748068-79748087 | MS.gene50436:intron | 25.0% |
| !!! | TTTGTTTTGTTACAGAATTG+AGG | - | chr4.4:79745326-79745345 | MS.gene50436:intron | 25.0% |
| !!! | TTTTTTAGTCAAATTTGTGC+AGG | - | chr4.4:79749291-79749310 | MS.gene50436:intron | 25.0% |
| AAAAATGTTCTTAGCATGCA+TGG | + | chr4.4:79746988-79747007 | None:intergenic | 30.0% | |
| AAAATGTTCTTAGCATGCAT+GGG | + | chr4.4:79746987-79747006 | None:intergenic | 30.0% | |
| AACATACCAAAATGTTACTG+GGG | - | chr4.4:79745652-79745671 | MS.gene50436:intron | 30.0% | |
| AATATGTGCTTATGTTATGG+CGG | - | chr4.4:79745676-79745695 | MS.gene50436:intron | 30.0% | |
| AATGTTTGTAGGAAGTAAAC+GGG | - | chr4.4:79747547-79747566 | MS.gene50436:intron | 30.0% | |
| AGCGATACATTTATTACTTG+GGG | + | chr4.4:79746427-79746446 | None:intergenic | 30.0% | |
| ATTGACAAACAATGGTATGT+AGG | - | chr4.4:79748503-79748522 | MS.gene50436:intron | 30.0% | |
| ATTTGACTAAAAAAAGTGGC+AGG | + | chr4.4:79749285-79749304 | None:intergenic | 30.0% | |
| CAGAAAAATCAAATAGATGC+TGG | - | chr4.4:79747075-79747094 | MS.gene50436:intron | 30.0% | |
| CCATCATCAAAATAAAACTC+AGG | + | chr4.4:79746926-79746945 | None:intergenic | 30.0% | |
| CGGAAAATTACTGTCAAATT+CGG | - | chr4.4:79745773-79745792 | MS.gene50436:intron | 30.0% | |
| CGTTTAAAAACATTCCGAAT+GGG | + | chr4.4:79747257-79747276 | None:intergenic | 30.0% | |
| GAAGAAAGCAAACAGAAAAT+TGG | - | chr4.4:79746758-79746777 | MS.gene50436:intron | 30.0% | |
| GTTTAAAAACATTCCGAATG+GGG | + | chr4.4:79747256-79747275 | None:intergenic | 30.0% | |
| GTTTACCAGAAATCATTAGT+TGG | + | chr4.4:79747584-79747603 | None:intergenic | 30.0% | |
| TCAAAAACGAGAATTGATCT+GGG | + | chr4.4:79749815-79749834 | None:intergenic | 30.0% | |
| TCAAGGTTCATATTGTGAAT+TGG | + | chr4.4:79749499-79749518 | None:intergenic | 30.0% | |
| TCTACTAGTAGTATATGACT+TGG | - | chr4.4:79746512-79746531 | MS.gene50436:intron | 30.0% | |
| TGATAAACGTACTCATCTAA+TGG | - | chr4.4:79748616-79748635 | MS.gene50436:intron | 30.0% | |
| TGTGTGAAATTCAGTCTATA+AGG | - | chr4.4:79746050-79746069 | MS.gene50436:intron | 30.0% | |
| TTATGAGGAGACTAAATTCA+AGG | - | chr4.4:79749723-79749742 | MS.gene50436:intron | 30.0% | |
| TTCAATCTTCTTAGGAATCT+TGG | - | chr4.4:79747222-79747241 | MS.gene50436:intron | 30.0% | |
| TTCTAAACATGAAAGCAAGT+TGG | - | chr4.4:79746255-79746274 | MS.gene50436:intron | 30.0% | |
| TTGATCGAATTTGTCTCATA+TGG | - | chr4.4:79749111-79749130 | MS.gene50436:intron | 30.0% | |
| TTGTCAATAAGTGGATATAG+AGG | - | chr4.4:79748430-79748449 | MS.gene50436:intron | 30.0% | |
| TTGTCAATCACGAAAAATAG+TGG | + | chr4.4:79748491-79748510 | None:intergenic | 30.0% | |
| TTTAAAAACATTCCGAATGG+GGG | + | chr4.4:79747255-79747274 | None:intergenic | 30.0% | |
| TTTCATCTTAATTGCAGGTT+TGG | - | chr4.4:79747943-79747962 | MS.gene50436:intron | 30.0% | |
| TTTGACTAAAAAAAGTGGCA+GGG | + | chr4.4:79749284-79749303 | None:intergenic | 30.0% | |
| TTTGGGAAATGGAAATATAC+TGG | - | chr4.4:79747756-79747775 | MS.gene50436:intron | 30.0% | |
| ! | AATTTGACAGTAATTTTCCG+CGG | + | chr4.4:79745773-79745792 | None:intergenic | 30.0% |
| ! | AGATAAAAAGCACAAAACCA+TGG | - | chr4.4:79745835-79745854 | MS.gene50436:intron | 30.0% |
| ! | ATTTTAAATTGCCAACAAGG+TGG | + | chr4.4:79747517-79747536 | None:intergenic | 30.0% |
| ! | CAGATATTTTCTTCTTTCCA+CGG | + | chr4.4:79748271-79748290 | None:intergenic | 30.0% |
| ! | CTTGATTTGATAACCATGTA+GGG | - | chr4.4:79749514-79749533 | MS.gene50436:intron | 30.0% |
| ! | TATACTACTAGTAGAAGTAC+AGG | + | chr4.4:79746507-79746526 | None:intergenic | 30.0% |
| ! | TGCTGATGATATTTTCATTG+GGG | - | chr4.4:79746784-79746803 | MS.gene50436:intron | 30.0% |
| ! | TTCACACTGATTAGTGTTAT+TGG | + | chr4.4:79745987-79746006 | None:intergenic | 30.0% |
| ! | TTTTCGTGATTGACAAACAA+TGG | - | chr4.4:79748495-79748514 | MS.gene50436:intron | 30.0% |
| !! | CCATTCGGAATGTTTTTAAA+CGG | - | chr4.4:79747255-79747274 | MS.gene50436:intron | 30.0% |
| !! | GATTTTAAAGAAAGAGTTCG+CGG | + | chr4.4:79745867-79745886 | None:intergenic | 30.0% |
| !! | GTGCTGATGATATTTTCATT+GGG | - | chr4.4:79746783-79746802 | MS.gene50436:intron | 30.0% |
| !! | TTTTCATATGATAGGTTGAC+TGG | - | chr4.4:79747046-79747065 | MS.gene50436:CDS | 30.0% |
| !!! | CCTGAGTTTTATTTTGATGA+TGG | - | chr4.4:79746923-79746942 | MS.gene50436:intron | 30.0% |
| !!! | CTTCATTTTGTTGATTTGAC+AGG | - | chr4.4:79749693-79749712 | MS.gene50436:intron | 30.0% |
| !!! | GACCTACTTTTTCATATGAT+AGG | - | chr4.4:79747038-79747057 | MS.gene50436:CDS | 30.0% |
| !!! | GATTTGTTGGTTAACTTTTC+AGG | - | chr4.4:79746668-79746687 | MS.gene50436:intron | 30.0% |
| AAACTGTTCAAAGGATGGTT+AGG | + | chr4.4:79747739-79747758 | None:intergenic | 35.0% | |
| AACAATGGTATGTAGGTACT+TGG | - | chr4.4:79748510-79748529 | MS.gene50436:intron | 35.0% | |
| AACCATCCTTTGAACAGTTT+GGG | - | chr4.4:79747739-79747758 | MS.gene50436:intron | 35.0% | |
| AACTGTTCAAAGGATGGTTA+GGG | + | chr4.4:79747738-79747757 | None:intergenic | 35.0% | |
| AATTGCAGGAACAATGCTTT+CGG | + | chr4.4:79746822-79746841 | None:intergenic | 35.0% | |
| ACATACCAAAATGTTACTGG+GGG | - | chr4.4:79745653-79745672 | MS.gene50436:intron | 35.0% | |
| AGATGAAGCAAACTCAAAAG+TGG | - | chr4.4:79746390-79746409 | MS.gene50436:intron | 35.0% | |
| ATATGTGCTTATGTTATGGC+GGG | - | chr4.4:79745677-79745696 | MS.gene50436:intron | 35.0% | |
| ATGTTTGTAGGAAGTAAACG+GGG | - | chr4.4:79747548-79747567 | MS.gene50436:intron | 35.0% | |
| CCCTCACTATTGTATTAGAA+CGG | + | chr4.4:79746599-79746618 | None:intergenic | 35.0% | |
| CCGTTCTAATACAATAGTGA+GGG | - | chr4.4:79746596-79746615 | MS.gene50436:intron | 35.0% | |
| CCGTTTAAAAACATTCCGAA+TGG | + | chr4.4:79747258-79747277 | None:intergenic | 35.0% | |
| CCTACATGGTTATCAAATCA+AGG | + | chr4.4:79749516-79749535 | None:intergenic | 35.0% | |
| GAAAGCAAACAGAAAATTGG+TGG | - | chr4.4:79746761-79746780 | MS.gene50436:intron | 35.0% | |
| GAAGAATATCTGTCCAATTC+TGG | - | chr4.4:79747978-79747997 | MS.gene50436:intron | 35.0% | |
| GAATCCCAACTAATGATTTC+TGG | - | chr4.4:79747576-79747595 | MS.gene50436:intron | 35.0% | |
| GAATCGGTTATTGTGAGATT+TGG | - | chr4.4:79749661-79749680 | MS.gene50436:intron | 35.0% | |
| GGGAATATGTGCTTATGTTA+TGG | - | chr4.4:79745673-79745692 | MS.gene50436:intron | 35.0% | |
| GGTTCAGCTATGACTATTAA+AGG | + | chr4.4:79748160-79748179 | None:intergenic | 35.0% | |
| GTAGCAATGTTGTCAAATTG+CGG | - | chr4.4:79748333-79748352 | MS.gene50436:CDS | 35.0% | |
| TAACCATCCTTTGAACAGTT+TGG | - | chr4.4:79747738-79747757 | MS.gene50436:intron | 35.0% | |
| TAACCATGTAGGGAAATATC+AGG | - | chr4.4:79749524-79749543 | MS.gene50436:intron | 35.0% | |
| TAATAGCATTAGCACCTGTT+CGG | + | chr4.4:79746957-79746976 | None:intergenic | 35.0% | |
| TAGAAATCCATCAAAGTCGT+AGG | - | chr4.4:79745901-79745920 | MS.gene50436:intron | 35.0% | |
| TCCGTTCTAATACAATAGTG+AGG | - | chr4.4:79746595-79746614 | MS.gene50436:intron | 35.0% | |
| TTAATAGTCATAGCTGAACC+AGG | - | chr4.4:79748160-79748179 | MS.gene50436:CDS | 35.0% | |
| TTCTATCCATTACTCGTACA+CGG | - | chr4.4:79747112-79747131 | MS.gene50436:intron | 35.0% | |
| TTGACAGGCACTAAATTATG+AGG | - | chr4.4:79749708-79749727 | MS.gene50436:intron | 35.0% | |
| TTGGTATGTTAAACCCACTT+GGG | + | chr4.4:79745642-79745661 | None:intergenic | 35.0% | |
| TTTGGTATGTTAAACCCACT+TGG | + | chr4.4:79745643-79745662 | None:intergenic | 35.0% | |
| ! | ATATGATAGGTTGACTGGAT+TGG | - | chr4.4:79747051-79747070 | MS.gene50436:CDS | 35.0% |
| ! | ATATTCCCCCAGTAACATTT+TGG | + | chr4.4:79745661-79745680 | None:intergenic | 35.0% |
| ! | CACTTTCTAGCAAAAACAAG+TGG | + | chr4.4:79749408-79749427 | None:intergenic | 35.0% |
| ! | CCTTGATTTGATAACCATGT+AGG | - | chr4.4:79749513-79749532 | MS.gene50436:intron | 35.0% |
| ! | GAACTCTCAATGTGATTTGT+TGG | - | chr4.4:79746655-79746674 | MS.gene50436:intron | 35.0% |
| ! | TATGATAGGTTGACTGGATT+GGG | - | chr4.4:79747052-79747071 | MS.gene50436:CDS | 35.0% |
| ! | TGGCTCGTGAATTTGTTTAT+TGG | - | chr4.4:79749047-79749066 | MS.gene50436:intron | 35.0% |
| !! | GAGCACTTGCTGATAATTTT+GGG | + | chr4.4:79748993-79749012 | None:intergenic | 35.0% |
| !! | GTTTTAACATGGACAAGAAC+TGG | + | chr4.4:79748030-79748049 | None:intergenic | 35.0% |
| !! | TGAAGCATATTGTGTTGGTT+GGG | - | chr4.4:79747695-79747714 | MS.gene50436:intron | 35.0% |
| !! | TTGATAAAGAAGGAGGTGTT+CGG | - | chr4.4:79748804-79748823 | MS.gene50436:intron | 35.0% |
| !!! | GGTGCTGATGATATTTTCAT+TGG | - | chr4.4:79746782-79746801 | MS.gene50436:intron | 35.0% |
| AAAGCACAAAACCATGGCAA+CGG | - | chr4.4:79745841-79745860 | MS.gene50436:intron | 40.0% | |
| AAAGCCTTGAAGTCCTTTGT+TGG | + | chr4.4:79749787-79749806 | None:intergenic | 40.0% | |
| AACGTACTCATCTAATGGCT+TGG | - | chr4.4:79748621-79748640 | MS.gene50436:intron | 40.0% | |
| AATAGCATTAGCACCTGTTC+GGG | + | chr4.4:79746956-79746975 | None:intergenic | 40.0% | |
| AATGTCACCTACGACTTTGA+TGG | + | chr4.4:79745911-79745930 | None:intergenic | 40.0% | |
| ACGCGAATAATTGCGATAGA+GGG | + | chr4.4:79747487-79747506 | None:intergenic | 40.0% | |
| ACGTACTCATCTAATGGCTT+GGG | - | chr4.4:79748622-79748641 | MS.gene50436:intron | 40.0% | |
| AGCATTGTTCCTGCAATTCA+AGG | - | chr4.4:79746824-79746843 | MS.gene50436:intron | 40.0% | |
| AGGAGTGAAGCATATTGTGT+TGG | - | chr4.4:79747690-79747709 | MS.gene50436:intron | 40.0% | |
| CAAACCCAGGTTTCATTTGT+GGG | + | chr4.4:79746883-79746902 | None:intergenic | 40.0% | |
| CCAAACCTCTGGCAATATAT+TGG | + | chr4.4:79746730-79746749 | None:intergenic | 40.0% | |
| CCAATATATTGCCAGAGGTT+TGG | - | chr4.4:79746727-79746746 | MS.gene50436:intron | 40.0% | |
| CCATTTCCCAAACTGTTCAA+AGG | + | chr4.4:79747748-79747767 | None:intergenic | 40.0% | |
| CCTTTGAACAGTTTGGGAAA+TGG | - | chr4.4:79747745-79747764 | MS.gene50436:intron | 40.0% | |
| CTAGCAAAAACAAGTGGCAT+AGG | + | chr4.4:79749402-79749421 | None:intergenic | 40.0% | |
| GAGAGAGATGAAATAGATCG+AGG | - | chr4.4:79746364-79746383 | MS.gene50436:intron | 40.0% | |
| GCATGAGTGAATAACGACTT+TGG | + | chr4.4:79747625-79747644 | None:intergenic | 40.0% | |
| GTGTACCTTATGATCGTGTA+AGG | + | chr4.4:79748008-79748027 | None:intergenic | 40.0% | |
| GTGTTCCTTACACGATCATA+AGG | - | chr4.4:79748000-79748019 | MS.gene50436:intron | 40.0% | |
| GTTCCTGATATTTCCCTACA+TGG | + | chr4.4:79749530-79749549 | None:intergenic | 40.0% | |
| TAATTGCGATAGAGGGAAGA+TGG | + | chr4.4:79747480-79747499 | None:intergenic | 40.0% | |
| TATGTTAAACCCACTTGGGT+TGG | + | chr4.4:79745638-79745657 | None:intergenic | 40.0% | |
| TCAAACCCAGGTTTCATTTG+TGG | + | chr4.4:79746884-79746903 | None:intergenic | 40.0% | |
| TCTATAGTACTGTAGTGCTG+CGG | - | chr4.4:79748454-79748473 | MS.gene50436:intron | 40.0% | |
| TGAACCAACAAAGGACTTCA+AGG | - | chr4.4:79749780-79749799 | MS.gene50436:CDS | 40.0% | |
| TGTGTGATCTCCTAGTTACA+CGG | - | chr4.4:79745961-79745980 | MS.gene50436:intron | 40.0% | |
| TTCCCAAACTGTTCAAAGGA+TGG | + | chr4.4:79747744-79747763 | None:intergenic | 40.0% | |
| TTCTGATCTAACCAAACCTC+TGG | + | chr4.4:79746741-79746760 | None:intergenic | 40.0% | |
| ! | GTGAAGCATATTGTGTTGGT+TGG | - | chr4.4:79747694-79747713 | MS.gene50436:intron | 40.0% |
| !! | ATACTTGGTGTCATTATCCG+TGG | - | chr4.4:79748251-79748270 | MS.gene50436:CDS | 40.0% |
| !! | ATTGTGTTGGTTGGGTCTAT+GGG | - | chr4.4:79747703-79747722 | MS.gene50436:intron | 40.0% |
| !! | CGAGCACTTGCTGATAATTT+TGG | + | chr4.4:79748994-79749013 | None:intergenic | 40.0% |
| !! | CGAGTAATGGATAGAAAGCA+TGG | + | chr4.4:79747108-79747127 | None:intergenic | 40.0% |
| !! | CTTCATTGTTGATTCAGACC+TGG | - | chr4.4:79748773-79748792 | MS.gene50436:intron | 40.0% |
| !! | TATTGTGTTGGTTGGGTCTA+TGG | - | chr4.4:79747702-79747721 | MS.gene50436:intron | 40.0% |
| !! | TGATAAAGAAGGAGGTGTTC+GGG | - | chr4.4:79748805-79748824 | MS.gene50436:intron | 40.0% |
| AAAAACATTCCGAATGGGGG+TGG | + | chr4.4:79747252-79747271 | None:intergenic | 45.0% | |
| AAAACATTCCGAATGGGGGT+GGG | + | chr4.4:79747251-79747270 | None:intergenic | 45.0% | |
| ACTTCTGCTACATCAGCTCT+AGG | + | chr4.4:79748884-79748903 | None:intergenic | 45.0% | |
| CAAACCACTGTCCTTGTTAC+TGG | - | chr4.4:79745223-79745242 | MS.gene50436:CDS | 45.0% | |
| CACGCGAATAATTGCGATAG+AGG | + | chr4.4:79747488-79747507 | None:intergenic | 45.0% | |
| CCCACTCAAATTGACACCAA+GGG | - | chr4.4:79745551-79745570 | MS.gene50436:intron | 45.0% | |
| CGTGTAAGGAACACCAGAAT+TGG | + | chr4.4:79747994-79748013 | None:intergenic | 45.0% | |
| CTATAAACAGCTAAGGCTGC+AGG | - | chr4.4:79747670-79747689 | MS.gene50436:intron | 45.0% | |
| CTGCTCATGAATCTCTACGT+GGG | - | chr4.4:79749217-79749236 | MS.gene50436:intron | 45.0% | |
| CTGTCCCACAAATGAAACCT+GGG | - | chr4.4:79746876-79746895 | MS.gene50436:intron | 45.0% | |
| GACCTAGCATCAAAACCTGA+GGG | - | chr4.4:79749751-79749770 | MS.gene50436:intron | 45.0% | |
| GCAAGTGCTCGAGTGAATTA+TGG | - | chr4.4:79749003-79749022 | MS.gene50436:intron | 45.0% | |
| GCATCTGTACCTTGAATTGC+AGG | + | chr4.4:79746836-79746855 | None:intergenic | 45.0% | |
| TCGGGAACTCATTGTAGGAA+AGG | - | chr4.4:79748823-79748842 | MS.gene50436:intron | 45.0% | |
| TCTGCTCATGAATCTCTACG+TGG | - | chr4.4:79749216-79749235 | MS.gene50436:intron | 45.0% | |
| TCTTGAATCTCTTGATGCCG+CGG | - | chr4.4:79745753-79745772 | MS.gene50436:intron | 45.0% | |
| TCTTTATCAAGCAAGCCACC+AGG | + | chr4.4:79748794-79748813 | None:intergenic | 45.0% | |
| TGACCTAGCATCAAAACCTG+AGG | - | chr4.4:79749750-79749769 | MS.gene50436:intron | 45.0% | |
| TGATGGTTCATATCCCGAAC+AGG | - | chr4.4:79746940-79746959 | MS.gene50436:intron | 45.0% | |
| TTGATCCAACCAAAGGTGGA+AGG | - | chr4.4:79746900-79746919 | MS.gene50436:intron | 45.0% | |
| ! | GGCTTGCTTGATAAAGAAGG+AGG | - | chr4.4:79748797-79748816 | MS.gene50436:intron | 45.0% |
| ! | GTGTTATTGGCCGTGTAACT+AGG | + | chr4.4:79745974-79745993 | None:intergenic | 45.0% |
| ! | TGTTTTCACGGTCCCAAACT+CGG | - | chr4.4:79748080-79748099 | MS.gene50436:intron | 45.0% |
| ! | TTTTGACCTGTGCAATGCAC+AGG | + | chr4.4:79748118-79748137 | None:intergenic | 45.0% |
| !! | CATTGTTGATTCAGACCTGG+TGG | - | chr4.4:79748776-79748795 | MS.gene50436:intron | 45.0% |
| !! | CCCTTGGTGTCAATTTGAGT+GGG | + | chr4.4:79745554-79745573 | None:intergenic | 45.0% |
| !! | GGTGGCTTGCTTGATAAAGA+AGG | - | chr4.4:79748794-79748813 | MS.gene50436:intron | 45.0% |
| !! | TCCCTTGGTGTCAATTTGAG+TGG | + | chr4.4:79745555-79745574 | None:intergenic | 45.0% |
| !! | TGGCATGGTGGTATTGGTTT+GGG | + | chr4.4:79745618-79745637 | None:intergenic | 45.0% |
| !! | TTGGCATGGTGGTATTGGTT+TGG | + | chr4.4:79745619-79745638 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAAAACATTT+CGG | + | chr4.4:79745513-79745532 | None:intergenic | 5.0% |
| AAACTCAGGCCTTCCACCTT+TGG | + | chr4.4:79746912-79746931 | None:intergenic | 50.0% | |
| ACTGTCCTTGTTACTGGTGC+TGG | - | chr4.4:79745229-79745248 | MS.gene50436:CDS | 50.0% | |
| AGCACCAGTAACAAGGACAG+TGG | + | chr4.4:79745230-79745249 | None:intergenic | 50.0% | |
| CAAACGCCGTGTACGAGTAA+TGG | + | chr4.4:79747121-79747140 | None:intergenic | 50.0% | |
| CATTACTCGTACACGGCGTT+TGG | - | chr4.4:79747119-79747138 | MS.gene50436:intron | 50.0% | |
| CCTGGGTTTGATCCAACCAA+AGG | - | chr4.4:79746893-79746912 | MS.gene50436:intron | 50.0% | |
| CCTTTGGTTGGATCAAACCC+AGG | + | chr4.4:79746896-79746915 | None:intergenic | 50.0% | |
| CGCGACCAATATATTGCCAG+AGG | - | chr4.4:79746722-79746741 | MS.gene50436:intron | 50.0% | |
| GCCCACTCAAATTGACACCA+AGG | - | chr4.4:79745550-79745569 | MS.gene50436:intron | 50.0% | |
| GCTGTCCCACAAATGAAACC+TGG | - | chr4.4:79746875-79746894 | MS.gene50436:intron | 50.0% | |
| GGCATAGGAACATTACGAGC+AGG | + | chr4.4:79749387-79749406 | None:intergenic | 50.0% | |
| GGGAAGATGGAAAGCAAGCT+AGG | + | chr4.4:79747467-79747486 | None:intergenic | 50.0% | |
| GGGTTTGATCCAACCAAAGG+TGG | - | chr4.4:79746896-79746915 | MS.gene50436:intron | 50.0% | |
| GGTGTTCGGGAACTCATTGT+AGG | - | chr4.4:79748818-79748837 | MS.gene50436:intron | 50.0% | |
| TAGGTGGTCTGTCCGAGTTT+GGG | + | chr4.4:79748095-79748114 | None:intergenic | 50.0% | |
| TGGCAGGGTGCATTAAGCTT+AGG | + | chr4.4:79749269-79749288 | None:intergenic | 50.0% | |
| TGTAGCAGAAGTCTGCGTTC+AGG | - | chr4.4:79748892-79748911 | MS.gene50436:intron | 50.0% | |
| ! | TCTCTGGTTCGATTCTCCCT+TGG | + | chr4.4:79745570-79745589 | None:intergenic | 50.0% |
| !! | CACCCTCAGGTTTTGATGCT+AGG | + | chr4.4:79749756-79749775 | None:intergenic | 50.0% |
| !! | GTATTGGTTTGGGACCTCAG+AGG | + | chr4.4:79745608-79745627 | None:intergenic | 50.0% |
| !! | TAAACCCACTTGGGTTGGCA+TGG | + | chr4.4:79745633-79745652 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCATGGTGGTAT+TGG | + | chr4.4:79745624-79745643 | None:intergenic | 50.0% |
| ACCACCATGCCAACCCAAGT+GGG | - | chr4.4:79745626-79745645 | MS.gene50436:intron | 55.0% | |
| CACCTACCTGTGCATTGCAC+AGG | - | chr4.4:79748109-79748128 | MS.gene50436:CDS | 55.0% | |
| CTGTGCAATGCACAGGTAGG+TGG | + | chr4.4:79748111-79748130 | None:intergenic | 55.0% | |
| CTTGGATTCCCACCCCCATT+CGG | - | chr4.4:79747240-79747259 | MS.gene50436:intron | 55.0% | |
| GACCACCAGCACCAGTAACA+AGG | + | chr4.4:79745237-79745256 | None:intergenic | 55.0% | |
| GACCTGTGCAATGCACAGGT+AGG | + | chr4.4:79748114-79748133 | None:intergenic | 55.0% | |
| GCGTGAGTCTTCCACCTTGT+TGG | - | chr4.4:79747503-79747522 | MS.gene50436:intron | 55.0% | |
| GGGTGCAGGTGAACCAACAA+AGG | - | chr4.4:79749771-79749790 | MS.gene50436:intron | 55.0% | |
| GTAGGTGGTCTGTCCGAGTT+TGG | + | chr4.4:79748096-79748115 | None:intergenic | 55.0% | |
| TACCACCATGCCAACCCAAG+TGG | - | chr4.4:79745625-79745644 | MS.gene50436:intron | 55.0% | |
| TCAGGCCTTCCACCTTTGGT+TGG | + | chr4.4:79746908-79746927 | None:intergenic | 55.0% | |
| TCGAACCAGAGACCTCGAAG+AGG | - | chr4.4:79745578-79745597 | MS.gene50436:intron | 55.0% | |
| ! | GCATCAAAACCTGAGGGTGC+AGG | - | chr4.4:79749757-79749776 | MS.gene50436:intron | 55.0% |
| ! | GTCCTTGTTACTGGTGCTGG+TGG | - | chr4.4:79745232-79745251 | MS.gene50436:CDS | 55.0% |
| !! | GTGTTGGTTGGGTCTATGGG+TGG | - | chr4.4:79747706-79747725 | MS.gene50436:intron | 55.0% |
| GTGCTCCTCTTCGAGGTCTC+TGG | + | chr4.4:79745586-79745605 | None:intergenic | 60.0% | |
| ! | GTTGGTTCACCTGCACCCTC+AGG | + | chr4.4:79749769-79749788 | None:intergenic | 60.0% |
| !! | ACCCACTTGGGTTGGCATGG+TGG | + | chr4.4:79745630-79745649 | None:intergenic | 60.0% |
| !! | CTCAGAGGTGCTCCTCTTCG+AGG | + | chr4.4:79745593-79745612 | None:intergenic | 60.0% |
| !! | CTCGAAGAGGAGCACCTCTG+AGG | - | chr4.4:79745591-79745610 | MS.gene50436:intron | 60.0% |
| AGAGTTCGCGGCCGTTGCCA+TGG | + | chr4.4:79745855-79745874 | None:intergenic | 65.0% | |
| !! | ACTGGTGCTGGTGGTCGCAC+AGG | - | chr4.4:79745241-79745260 | MS.gene50436:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 79745208 | 79749834 | 79745208 | ID=MS.gene50436 |
| chr4.4 | mRNA | 79745208 | 79749834 | 79745208 | ID=MS.gene50436.t1;Parent=MS.gene50436 |
| chr4.4 | exon | 79749780 | 79749834 | 79749780 | ID=MS.gene50436.t1.exon1;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79749780 | 79749834 | 79749780 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| chr4.4 | exon | 79748081 | 79748352 | 79748081 | ID=MS.gene50436.t1.exon2;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79748081 | 79748352 | 79748081 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| chr4.4 | exon | 79747946 | 79747982 | 79747946 | ID=MS.gene50436.t1.exon3;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79747946 | 79747982 | 79747946 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| chr4.4 | exon | 79747265 | 79747362 | 79747265 | ID=MS.gene50436.t1.exon4;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79747265 | 79747362 | 79747265 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| chr4.4 | exon | 79747021 | 79747082 | 79747021 | ID=MS.gene50436.t1.exon5;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79747021 | 79747082 | 79747021 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| chr4.4 | exon | 79746129 | 79746252 | 79746129 | ID=MS.gene50436.t1.exon6;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79746129 | 79746252 | 79746129 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| chr4.4 | exon | 79745208 | 79745327 | 79745208 | ID=MS.gene50436.t1.exon7;Parent=MS.gene50436.t1 |
| chr4.4 | CDS | 79745208 | 79745327 | 79745208 | ID=cds.MS.gene50436.t1;Parent=MS.gene50436.t1 |
| Gene Sequence |
| Protein sequence |
