Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067312.t1 | XP_003627492.2 | 90.5 | 337 | 8 | 1 | 22 | 334 | 156 | 492 | 4.30E-169 | 604 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067312.t1 | Q8GYY5 | 51.7 | 323 | 121 | 8 | 22 | 334 | 150 | 447 | 9.9e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067312.t1 | G7L9Z1 | 90.5 | 337 | 8 | 1 | 22 | 334 | 156 | 492 | 3.1e-169 | 604.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene067312 | 0.825071 | 5.73E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene067312 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene067312 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene067312 | 0.811106 | 8.27E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene067312 | 0.83803 | 3.66E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene067312 | 0.811761 | 5.96E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene067312 | 0.813313 | 2.73E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene067312 | 0.818457 | 1.94E-52 | -1.69E-46 |
| MS.gene051388 | MS.gene067312 | 0.847069 | 1.46E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene067312 | 0.85512 | 7.81E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene067312 | 0.835211 | 1.91E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene067312 | 0.822855 | 1.89E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene067312 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene067312 | 0.83822 | 3.27E-57 | -1.69E-46 |
| MS.gene052673 | MS.gene067312 | -0.820594 | 6.31E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene067312 | 0.809325 | 2.00E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene067312 | 0.831155 | 1.96E-55 | -1.69E-46 |
| MS.gene053079 | MS.gene067312 | 0.805301 | 1.43E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene067312 | 0.828606 | 8.19E-55 | -1.69E-46 |
| MS.gene053221 | MS.gene067312 | 0.822587 | 2.19E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene067312 | 0.817617 | 3.01E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene067312 | 0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene067312 | 0.800644 | 1.31E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene067312 | 0.828161 | 1.05E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene067312 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene067312 | 0.857897 | 1.19E-62 | -1.69E-46 |
| MS.gene055466 | MS.gene067312 | 0.870533 | 1.36E-66 | -1.69E-46 |
| MS.gene055468 | MS.gene067312 | 0.865815 | 4.49E-65 | -1.69E-46 |
| MS.gene055469 | MS.gene067312 | 0.857783 | 1.29E-62 | -1.69E-46 |
| MS.gene055537 | MS.gene067312 | 0.806059 | 9.88E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene067312 | -0.838492 | 2.78E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene067312 | 0.805924 | 1.06E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene067312 | 0.815821 | 7.60E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene067312 | -0.835392 | 1.72E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene067312 | 0.823474 | 1.36E-53 | -1.69E-46 |
| MS.gene056522 | MS.gene067312 | -0.806468 | 8.11E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene067312 | 0.813648 | 2.30E-51 | -1.69E-46 |
| MS.gene058087 | MS.gene067312 | 0.801162 | 1.03E-48 | -1.69E-46 |
| MS.gene058339 | MS.gene067312 | 0.801719 | 7.89E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene067312 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene067312 | 0.82841 | 9.13E-55 | -1.69E-46 |
| MS.gene059570 | MS.gene067312 | 0.805616 | 1.23E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene067312 | 0.804166 | 2.46E-49 | -1.69E-46 |
| MS.gene059937 | MS.gene067312 | 0.820876 | 5.44E-53 | -1.69E-46 |
| MS.gene060505 | MS.gene067312 | 0.806833 | 6.79E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene067312 | 0.814499 | 1.49E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene067312 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene067312 | 0.80089 | 1.17E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067312.t1 | MTR_8g026680 | 90.504 | 337 | 8 | 1 | 22 | 334 | 156 | 492 | 0.0 | 627 |
| MS.gene067312.t1 | MTR_7g104900 | 65.946 | 185 | 39 | 1 | 22 | 182 | 144 | 328 | 8.72e-82 | 256 |
| MS.gene067312.t1 | MTR_1g089500 | 75.000 | 152 | 38 | 0 | 22 | 173 | 114 | 265 | 1.63e-78 | 248 |
| MS.gene067312.t1 | MTR_2g086580 | 45.190 | 343 | 145 | 8 | 22 | 333 | 120 | 450 | 4.35e-78 | 246 |
| MS.gene067312.t1 | MTR_4g052850 | 71.711 | 152 | 43 | 0 | 22 | 173 | 139 | 290 | 2.21e-77 | 241 |
| MS.gene067312.t1 | MTR_7g107560 | 71.053 | 152 | 44 | 0 | 22 | 173 | 107 | 258 | 7.70e-75 | 237 |
| MS.gene067312.t1 | MTR_7g081615 | 64.706 | 153 | 52 | 1 | 22 | 174 | 22 | 172 | 1.16e-68 | 213 |
| MS.gene067312.t1 | MTR_5g064420 | 62.658 | 158 | 55 | 1 | 10 | 167 | 42 | 195 | 1.26e-64 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067312.t1 | AT2G46710 | 51.543 | 324 | 120 | 8 | 22 | 334 | 150 | 447 | 1.01e-94 | 289 |
| MS.gene067312.t1 | AT3G11490 | 74.675 | 154 | 39 | 0 | 22 | 175 | 138 | 291 | 5.12e-80 | 250 |
| MS.gene067312.t1 | AT4G03100 | 75.000 | 152 | 38 | 0 | 22 | 173 | 125 | 276 | 4.81e-79 | 248 |
| MS.gene067312.t1 | AT5G22400 | 75.658 | 152 | 37 | 0 | 22 | 173 | 162 | 313 | 5.78e-78 | 246 |
| MS.gene067312.t1 | AT1G08340 | 69.737 | 152 | 46 | 0 | 22 | 173 | 48 | 199 | 4.03e-75 | 234 |
Find 70 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8.4:+70144116 | MS.gene067312:CDS |
| AAAGGACCACTTTCGTATCT+TGG | 0.283881 | 8.4:-70145642 | None:intergenic |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8.4:-70145783 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8.4:-70144053 | None:intergenic |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8.4:+70143856 | MS.gene067312:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8.4:+70144105 | MS.gene067312:CDS |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8.4:-70143861 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8.4:-70145771 | None:intergenic |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8.4:+70144790 | MS.gene067312:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8.4:+70144774 | MS.gene067312:CDS |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8.4:-70145421 | None:intergenic |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8.4:-70145750 | None:intergenic |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8.4:-70145441 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8.4:+70144665 | MS.gene067312:CDS |
| CTGGCACTAGGTACCCTTGT+AGG | 0.471703 | 8.4:-70142903 | None:intergenic |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8.4:+70143828 | MS.gene067312:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8.4:+70144067 | MS.gene067312:CDS |
| GGAAGGAAGAGGAGAAGCTT+GGG | 0.485623 | 8.4:+70145812 | MS.gene067312:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8.4:-70145541 | None:intergenic |
| GGGAAGGAAGAGGAGAAGCT+TGG | 0.491896 | 8.4:+70145811 | MS.gene067312:CDS |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8.4:-70144771 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8.4:+70145724 | MS.gene067312:CDS |
| GCCTTCTGAGTTTCAGCCTG+AGG | 0.495415 | 8.4:+70142878 | MS.gene067312:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8.4:+70145525 | MS.gene067312:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8.4:+70144847 | MS.gene067312:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8.4:+70145790 | MS.gene067312:CDS |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8.4:+70145440 | MS.gene067312:CDS |
| GGTACCCTTGTAGGAACCTC+AGG | 0.515998 | 8.4:-70142894 | None:intergenic |
| TAACAAACCTGTGTCATGTT+GGG | 0.519362 | 8.4:-70144878 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8.4:-70144124 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8.4:+70144066 | MS.gene067312:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8.4:+70145538 | MS.gene067312:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8.4:-70144707 | None:intergenic |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8.4:-70144767 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8.4:+70143882 | MS.gene067312:CDS |
| CTACAAGGGTACCTAGTGCC+AGG | 0.543064 | 8.4:+70142904 | MS.gene067312:CDS |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8.4:-70145538 | None:intergenic |
| TTCAGCCTGAGGTTCCTACA+AGG | 0.552164 | 8.4:+70142889 | MS.gene067312:CDS |
| GCCATTGTAAATACTAGGGA+AGG | 0.559174 | 8.4:+70145795 | MS.gene067312:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8.4:+70145731 | MS.gene067312:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8.4:+70145688 | MS.gene067312:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8.4:+70145464 | MS.gene067312:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8.4:+70145791 | MS.gene067312:CDS |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8.4:+70144775 | MS.gene067312:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8.4:-70145468 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8.4:+70145705 | MS.gene067312:CDS |
| ACCTCAGGCTGAAACTCAGA+AGG | 0.584588 | 8.4:-70142879 | None:intergenic |
| AATGGAGCGTAGAGAAACTT+CGG | 0.589113 | 8.4:+70145556 | MS.gene067312:CDS |
| GTAAATACTAGGGAAGGAAG+AGG | 0.593283 | 8.4:+70145801 | MS.gene067312:CDS |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8.4:-70144680 | None:intergenic |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8.4:+70145511 | MS.gene067312:CDS |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8.4:-70145438 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8.4:-70144663 | None:intergenic |
| TTTCGCGCCCAACATGACAC+AGG | 0.615447 | 8.4:+70144871 | MS.gene067312:CDS |
| TCCTTCCCTAGTATTTACAA+TGG | 0.616815 | 8.4:-70145796 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8.4:-70144032 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8.4:+70143829 | MS.gene067312:CDS |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8.4:+70145389 | MS.gene067312:CDS |
| TCAGCCTGAGGTTCCTACAA+GGG | 0.635145 | 8.4:+70142890 | MS.gene067312:CDS |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8.4:-70145418 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8.4:+70144003 | MS.gene067312:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8.4:+70144081 | MS.gene067312:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8.4:+70143885 | MS.gene067312:CDS |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8.4:-70145749 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8.4:-70144751 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.658298 | 8.4:-70144879 | None:intergenic |
| AGAGAAACTTCGGAGCTCCG+AGG | 0.659373 | 8.4:+70145566 | MS.gene067312:CDS |
| GTAACTCCAAGATACGAAAG+TGG | 0.671137 | 8.4:+70145636 | MS.gene067312:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8.4:+70144688 | MS.gene067312:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8.4:-70144096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATGAAATTTATGTAATT+TGG | + | chr8.4:70142956-70142975 | MS.gene067312:intron | 15.0% |
| !! | ATAGATATAAAAAATTTACC+TGG | - | chr8.4:70142925-70142944 | None:intergenic | 15.0% |
| !! | TTATTGTACTTACAATAAAA+TGG | + | chr8.4:70143364-70143383 | MS.gene067312:intron | 15.0% |
| !!! | TAACTATAACTATTTTCTAA+AGG | - | chr8.4:70145663-70145682 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTTTAGAATTTT+TGG | + | chr8.4:70143074-70143093 | MS.gene067312:intron | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | + | chr8.4:70144640-70144659 | MS.gene067312:intron | 15.0% |
| !! | AAAATACAGATAATCAATCA+AGG | - | chr8.4:70143720-70143739 | None:intergenic | 20.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | + | chr8.4:70144361-70144380 | MS.gene067312:intron | 20.0% |
| !! | AAGTACAATAAAAGATTCAT+AGG | - | chr8.4:70143355-70143374 | None:intergenic | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | - | chr8.4:70144631-70144650 | None:intergenic | 20.0% |
| !! | CATACTTTATCTAATTTCAA+GGG | - | chr8.4:70143241-70143260 | None:intergenic | 20.0% |
| !! | CATCTAAATTTCATATTTCA+TGG | + | chr8.4:70145029-70145048 | MS.gene067312:intron | 20.0% |
| !! | GGTTGAAAAATAAAAAGATA+CGG | - | chr8.4:70144477-70144496 | None:intergenic | 20.0% |
| !! | TCATACTTTATCTAATTTCA+AGG | - | chr8.4:70143242-70143261 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | + | chr8.4:70143967-70143986 | MS.gene067312:intron | 20.0% |
| !!! | ATTCCTCTTAAGAAAATTTT+AGG | + | chr8.4:70143264-70143283 | MS.gene067312:intron | 20.0% |
| !!! | TATCTTTTTATTTTTCAACC+TGG | + | chr8.4:70144477-70144496 | MS.gene067312:intron | 20.0% |
| !!! | TGTATTTTTCATTTCACTTT+TGG | - | chr8.4:70145229-70145248 | None:intergenic | 20.0% |
| !!! | TTCAGTCAAATGAATTTTAT+AGG | - | chr8.4:70144154-70144173 | None:intergenic | 20.0% |
| ! | AAATTGCAGAACATACTTTA+AGG | - | chr8.4:70143911-70143930 | None:intergenic | 25.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | + | chr8.4:70144365-70144384 | MS.gene067312:intron | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | + | chr8.4:70144278-70144297 | MS.gene067312:intron | 25.0% |
| ! | CTTACAATAAAATGGTAGAA+TGG | + | chr8.4:70143372-70143391 | MS.gene067312:intron | 25.0% |
| ! | GCTAATTGTACAAAATATCA+GGG | - | chr8.4:70145095-70145114 | None:intergenic | 25.0% |
| ! | TAAATCCTGACTATTATGTA+TGG | + | chr8.4:70143525-70143544 | MS.gene067312:intron | 25.0% |
| ! | TAATAAGCTGAAAAATTCGA+TGG | + | chr8.4:70145134-70145153 | MS.gene067312:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | + | chr8.4:70143937-70143956 | MS.gene067312:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | - | chr8.4:70145011-70145030 | None:intergenic | 25.0% |
| ! | TGCTAATTGTACAAAATATC+AGG | - | chr8.4:70145096-70145115 | None:intergenic | 25.0% |
| !! | AAGCCTAAAATTTTCTTAAG+AGG | - | chr8.4:70143270-70143289 | None:intergenic | 25.0% |
| !! | GATATTTTGTACAATTAGCA+TGG | + | chr8.4:70145096-70145115 | MS.gene067312:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | + | chr8.4:70144209-70144228 | MS.gene067312:intron | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | + | chr8.4:70144948-70144967 | MS.gene067312:intron | 25.0% |
| !!! | AATGCTTTATTTCTTCTTGT+AGG | + | chr8.4:70143316-70143335 | MS.gene067312:intron | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | + | chr8.4:70144591-70144610 | MS.gene067312:intron | 25.0% |
| AAGCTGATGTAGATATTAAC+AGG | + | chr8.4:70143397-70143416 | MS.gene067312:intron | 30.0% | |
| AGTGTTCTTATGATGATAGA+GGG | + | chr8.4:70143829-70143848 | MS.gene067312:CDS | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | + | chr8.4:70144105-70144124 | MS.gene067312:CDS | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | + | chr8.4:70143882-70143901 | MS.gene067312:CDS | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | + | chr8.4:70145511-70145530 | MS.gene067312:CDS | 30.0% | |
| GCTCATAATTTACTGATAAG+TGG | + | chr8.4:70144277-70144296 | MS.gene067312:intron | 30.0% | |
| TAAAAAATTTACCTGGCACT+AGG | - | chr8.4:70142918-70142937 | None:intergenic | 30.0% | |
| TAATCAACCAGAAACATTTC+TGG | - | chr8.4:70144958-70144977 | None:intergenic | 30.0% | |
| TCTTGCCATTGTAAATACTA+GGG | + | chr8.4:70145791-70145810 | MS.gene067312:CDS | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | + | chr8.4:70144181-70144200 | MS.gene067312:intron | 30.0% | |
| TTAGTATTTGTTTGTGTCTC+TGG | + | chr8.4:70143136-70143155 | MS.gene067312:intron | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | + | chr8.4:70144067-70144086 | MS.gene067312:CDS | 30.0% | |
| ! | AAACTAGTTTGTCAGATTTG+TGG | + | chr8.4:70143677-70143696 | MS.gene067312:intron | 30.0% |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | - | chr8.4:70145517-70145536 | None:intergenic | 30.0% |
| ! | CCAACGCATACAAAATTTTA+AGG | - | chr8.4:70144252-70144271 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | + | chr8.4:70144249-70144268 | MS.gene067312:intron | 30.0% |
| ! | CTGTTCATTTTCAACAACAT+CGG | - | chr8.4:70144816-70144835 | None:intergenic | 30.0% |
| ! | GTTTTCCATACATAATAGTC+AGG | - | chr8.4:70143533-70143552 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | + | chr8.4:70145612-70145631 | MS.gene067312:CDS | 30.0% |
| AAGTTACGCAAATAACCGAA+AGG | - | chr8.4:70144199-70144218 | None:intergenic | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | + | chr8.4:70145263-70145282 | MS.gene067312:intron | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | + | chr8.4:70144645-70144664 | MS.gene067312:intron | 35.0% | |
| CACACTGCATCATTTAAAGA+CGG | - | chr8.4:70143778-70143797 | None:intergenic | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | + | chr8.4:70143828-70143847 | MS.gene067312:CDS | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | - | chr8.4:70145293-70145312 | None:intergenic | 35.0% | |
| CCAACTCAAAATACAATGCA+AGG | + | chr8.4:70143617-70143636 | MS.gene067312:intron | 35.0% | |
| CGTAAATACCTTAATCAAGC+CGG | - | chr8.4:70144127-70144146 | None:intergenic | 35.0% | |
| CTTTAAATGATGCAGTGTGA+AGG | + | chr8.4:70143779-70143798 | MS.gene067312:intron | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | - | chr8.4:70145294-70145313 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAT+CGG | + | chr8.4:70145104-70145123 | MS.gene067312:intron | 35.0% | |
| GTCTAATTTCATGCTTTCCA+TGG | + | chr8.4:70143989-70144008 | MS.gene067312:intron | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | + | chr8.4:70145790-70145809 | MS.gene067312:CDS | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | + | chr8.4:70143856-70143875 | MS.gene067312:CDS | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | + | chr8.4:70144066-70144085 | MS.gene067312:CDS | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | - | chr8.4:70144881-70144900 | None:intergenic | 35.0% | |
| TATCTATTAGAACAGCAACC+AGG | - | chr8.4:70144498-70144517 | None:intergenic | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | - | chr8.4:70145444-70145463 | None:intergenic | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | - | chr8.4:70145799-70145818 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | + | chr8.4:70145440-70145459 | MS.gene067312:CDS | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | - | chr8.4:70145441-70145460 | None:intergenic | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | - | chr8.4:70143864-70143883 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | - | chr8.4:70145295-70145314 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | - | chr8.4:70144882-70144901 | None:intergenic | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | + | chr8.4:70143885-70143904 | MS.gene067312:CDS | 35.0% |
| ! | TTGTTTATCCGGCTTGATTA+AGG | + | chr8.4:70144116-70144135 | MS.gene067312:CDS | 35.0% |
| !! | CCTTGCATTGTATTTTGAGT+TGG | - | chr8.4:70143620-70143639 | None:intergenic | 35.0% |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | + | chr8.4:70144255-70144274 | MS.gene067312:intron | 35.0% |
| AAAGGACCACTTTCGTATCT+TGG | - | chr8.4:70145645-70145664 | None:intergenic | 40.0% | |
| AAGATTGCTCTCACATAGCA+TGG | + | chr8.4:70145389-70145408 | MS.gene067312:CDS | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | + | chr8.4:70145556-70145575 | MS.gene067312:CDS | 40.0% | |
| ACATGTTAATCTGCGTGGTA+AGG | + | chr8.4:70143469-70143488 | MS.gene067312:intron | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | - | chr8.4:70144683-70144702 | None:intergenic | 40.0% | |
| AGATGTTTGATCACGGACTT+CGG | - | chr8.4:70144432-70144451 | None:intergenic | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | - | chr8.4:70145421-70145440 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | - | chr8.4:70145424-70145443 | None:intergenic | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | + | chr8.4:70145705-70145724 | MS.gene067312:CDS | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | + | chr8.4:70145538-70145557 | MS.gene067312:CDS | 40.0% | |
| CCATTCTATTCTTCCTAAGG+TGG | - | chr8.4:70145541-70145560 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | + | chr8.4:70145688-70145707 | MS.gene067312:CDS | 40.0% | |
| GAGCACAAGATGTTTGATCA+CGG | - | chr8.4:70144439-70144458 | None:intergenic | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | + | chr8.4:70145795-70145814 | MS.gene067312:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | - | chr8.4:70145544-70145563 | None:intergenic | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | - | chr8.4:70145752-70145771 | None:intergenic | 40.0% | |
| GTAAATACTAGGGAAGGAAG+AGG | + | chr8.4:70145801-70145820 | MS.gene067312:CDS | 40.0% | |
| GTAAATGAGCGAAACGAGAT+TGG | - | chr8.4:70144989-70145008 | None:intergenic | 40.0% | |
| GTAACTCCAAGATACGAAAG+TGG | + | chr8.4:70145636-70145655 | MS.gene067312:CDS | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | + | chr8.4:70145464-70145483 | MS.gene067312:CDS | 40.0% | |
| GTCTCTGGTATAGAAGATTC+TGG | + | chr8.4:70143151-70143170 | MS.gene067312:intron | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | + | chr8.4:70144790-70144809 | MS.gene067312:CDS | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | - | chr8.4:70144754-70144773 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | + | chr8.4:70144688-70144707 | MS.gene067312:CDS | 40.0% | |
| TTCATGCTTTCCATGGATGA+AGG | + | chr8.4:70143996-70144015 | MS.gene067312:intron | 40.0% | |
| TTTACAATGGCAAGACTTGC+AGG | - | chr8.4:70145786-70145805 | None:intergenic | 40.0% | |
| TTTCGACATGTTAATCTGCG+TGG | + | chr8.4:70143464-70143483 | MS.gene067312:intron | 40.0% | |
| ! | GCATCCTCAATTTGTTCACA+TGG | - | chr8.4:70145471-70145490 | None:intergenic | 40.0% |
| ! | GGCTTGCTCAATTGAAATAC+CGG | - | chr8.4:70145753-70145772 | None:intergenic | 40.0% |
| !! | CAATGAACATCGATTCCATG+TGG | - | chr8.4:70144099-70144118 | None:intergenic | 40.0% |
| !! | TGATGCAGTGTGAAGGTATT+TGG | + | chr8.4:70143786-70143805 | MS.gene067312:intron | 40.0% |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | - | chr8.4:70145586-70145605 | None:intergenic | 40.0% |
| AACAAAGGGATAGTGCCACA+TGG | + | chr8.4:70144081-70144100 | MS.gene067312:CDS | 45.0% | |
| AATCTGCGTGGTAAGGAACT+CGG | + | chr8.4:70143476-70143495 | MS.gene067312:intron | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | + | chr8.4:70144775-70144794 | MS.gene067312:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | - | chr8.4:70145774-70145793 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | - | chr8.4:70144666-70144685 | None:intergenic | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | - | chr8.4:70144009-70144028 | None:intergenic | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | - | chr8.4:70144193-70144212 | None:intergenic | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | - | chr8.4:70144417-70144436 | None:intergenic | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | - | chr8.4:70144056-70144075 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | + | chr8.4:70144406-70144425 | MS.gene067312:intron | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | + | chr8.4:70145587-70145606 | MS.gene067312:CDS | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | - | chr8.4:70144035-70144054 | None:intergenic | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | + | chr8.4:70144665-70144684 | MS.gene067312:CDS | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | + | chr8.4:70145525-70145544 | MS.gene067312:CDS | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | - | chr8.4:70144710-70144729 | None:intergenic | 45.0% | |
| TTTCCATGGATGAAGGCAGA+AGG | + | chr8.4:70144003-70144022 | MS.gene067312:intron | 45.0% | |
| ! | AACCTCTCACCACTAGCTTA+AGG | - | chr8.4:70143505-70143524 | None:intergenic | 45.0% |
| AAGTGGGCAGTTTGTCTGAG+CGG | + | chr8.4:70144294-70144313 | MS.gene067312:intron | 50.0% | |
| ACCTCAGGCTGAAACTCAGA+AGG | - | chr8.4:70142882-70142901 | None:intergenic | 50.0% | |
| ACTCGGACACCTTAAGCTAG+TGG | + | chr8.4:70143493-70143512 | MS.gene067312:intron | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | - | chr8.4:70144770-70144789 | None:intergenic | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | - | chr8.4:70144399-70144418 | None:intergenic | 50.0% | |
| CACCTTAAGCTAGTGGTGAG+AGG | + | chr8.4:70143500-70143519 | MS.gene067312:intron | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | + | chr8.4:70144774-70144793 | MS.gene067312:CDS | 50.0% | |
| GGAAGGAAGAGGAGAAGCTT+GGG | + | chr8.4:70145812-70145831 | MS.gene067312:CDS | 50.0% | |
| GTAGTTCAGACGCTGCTAAG+CGG | + | chr8.4:70143563-70143582 | MS.gene067312:intron | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | - | chr8.4:70144774-70144793 | None:intergenic | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | + | chr8.4:70144388-70144407 | MS.gene067312:intron | 50.0% | |
| TCAGCCTGAGGTTCCTACAA+GGG | + | chr8.4:70142890-70142909 | MS.gene067312:CDS | 50.0% | |
| TTCAGCCTGAGGTTCCTACA+AGG | + | chr8.4:70142889-70142908 | MS.gene067312:CDS | 50.0% | |
| TTCGGAGCTCCGAGGAAAAA+AGG | + | chr8.4:70145574-70145593 | MS.gene067312:CDS | 50.0% | |
| AGAGAAACTTCGGAGCTCCG+AGG | + | chr8.4:70145566-70145585 | MS.gene067312:CDS | 55.0% | |
| AGTGGGCAGTTTGTCTGAGC+GGG | + | chr8.4:70144295-70144314 | MS.gene067312:intron | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | - | chr8.4:70145281-70145300 | None:intergenic | 55.0% | |
| CTGGCACTAGGTACCCTTGT+AGG | - | chr8.4:70142906-70142925 | None:intergenic | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | + | chr8.4:70144847-70144866 | MS.gene067312:CDS | 55.0% | |
| GCCTTCTGAGTTTCAGCCTG+AGG | + | chr8.4:70142878-70142897 | MS.gene067312:CDS | 55.0% | |
| GGGAAGGAAGAGGAGAAGCT+TGG | + | chr8.4:70145811-70145830 | MS.gene067312:CDS | 55.0% | |
| GGTACCCTTGTAGGAACCTC+AGG | - | chr8.4:70142897-70142916 | None:intergenic | 55.0% | |
| TTTCGCGCCCAACATGACAC+AGG | + | chr8.4:70144871-70144890 | MS.gene067312:CDS | 55.0% | |
| !! | CTACAAGGGTACCTAGTGCC+AGG | + | chr8.4:70142904-70142923 | MS.gene067312:CDS | 55.0% |
| ACGGCGTGCGCAAGTTATGC+AGG | + | chr8.4:70145724-70145743 | MS.gene067312:CDS | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | + | chr8.4:70144311-70144330 | MS.gene067312:intron | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | + | chr8.4:70144300-70144319 | MS.gene067312:intron | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | + | chr8.4:70145731-70145750 | MS.gene067312:CDS | 60.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | + | chr8.4:70144296-70144315 | MS.gene067312:intron | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | + | chr8.4:70144310-70144329 | MS.gene067312:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 70142862 | 70145839 | 70142862 | ID=MS.gene067312 |
| chr8.4 | mRNA | 70142862 | 70145839 | 70142862 | ID=MS.gene067312.t1;Parent=MS.gene067312 |
| chr8.4 | exon | 70142862 | 70142925 | 70142862 | ID=MS.gene067312.t1.exon1;Parent=MS.gene067312.t1 |
| chr8.4 | CDS | 70142862 | 70142925 | 70142862 | ID=cds.MS.gene067312.t1;Parent=MS.gene067312.t1 |
| chr8.4 | exon | 70143811 | 70143914 | 70143811 | ID=MS.gene067312.t1.exon2;Parent=MS.gene067312.t1 |
| chr8.4 | CDS | 70143811 | 70143914 | 70143811 | ID=cds.MS.gene067312.t1;Parent=MS.gene067312.t1 |
| chr8.4 | exon | 70144018 | 70144137 | 70144018 | ID=MS.gene067312.t1.exon3;Parent=MS.gene067312.t1 |
| chr8.4 | CDS | 70144018 | 70144137 | 70144018 | ID=cds.MS.gene067312.t1;Parent=MS.gene067312.t1 |
| chr8.4 | exon | 70144662 | 70144892 | 70144662 | ID=MS.gene067312.t1.exon4;Parent=MS.gene067312.t1 |
| chr8.4 | CDS | 70144662 | 70144892 | 70144662 | ID=cds.MS.gene067312.t1;Parent=MS.gene067312.t1 |
| chr8.4 | exon | 70145354 | 70145839 | 70145354 | ID=MS.gene067312.t1.exon5;Parent=MS.gene067312.t1 |
| chr8.4 | CDS | 70145354 | 70145839 | 70145354 | ID=cds.MS.gene067312.t1;Parent=MS.gene067312.t1 |
| Gene Sequence |
| Protein sequence |
