Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84551.t1 | XP_003627492.2 | 98 | 392 | 8 | 0 | 1 | 392 | 101 | 492 | 6.20E-220 | 773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84551.t1 | Q8GYY5 | 60.4 | 394 | 111 | 6 | 2 | 392 | 96 | 447 | 2.9e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84551.t1 | G7L9Z1 | 98.0 | 392 | 8 | 0 | 1 | 392 | 101 | 492 | 4.5e-220 | 773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051388 | MS.gene84551 | 0.841747 | 3.94E-58 | -1.69E-46 |
| MS.gene052665 | MS.gene84551 | 0.808306 | 3.30E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene84551 | 0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene84551 | 0.816767 | 4.67E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene84551 | 0.814842 | 1.25E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene84551 | 0.832929 | 7.14E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene84551 | 0.835199 | 1.93E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene84551 | 0.839411 | 1.61E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene84551 | 0.851439 | 8.87E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene84551 | -0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene84551 | -0.807278 | 5.47E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene84551 | 0.819565 | 1.09E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene84551 | 0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene060505 | MS.gene84551 | 0.822739 | 2.02E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTATCCGGCTTGATTA+AGG | 0.253081 | 8.4:+70167910 | MS.gene84551:CDS |
| AAAGGACCACTTTCGTATCT+TGG | 0.283881 | 8.4:-70169436 | None:intergenic |
| TGATGCAGTGTGAAGGTATT+TGG | 0.306995 | 8.4:+70167580 | MS.gene84551:intron |
| TTTACAATGGCAAGACTTGC+AGG | 0.317689 | 8.4:-70169577 | None:intergenic |
| GATCTCGAACGAATGCTTCT+TGG | 0.347459 | 8.4:-70167847 | None:intergenic |
| GTGTTCCAACAATTCTTCTA+AGG | 0.355399 | 8.4:+70167650 | MS.gene84551:CDS |
| ATCGATGTTCATTGTTTATC+CGG | 0.358798 | 8.4:+70167899 | MS.gene84551:CDS |
| TGCATCCTTAGAAGAATTGT+TGG | 0.370772 | 8.4:-70167655 | None:intergenic |
| AGACTTGCAGGCTTCTTAGA+TGG | 0.380145 | 8.4:-70169565 | None:intergenic |
| GAGGGAAGATGTTTCTTCCT+TGG | 0.381917 | 8.4:+70166576 | MS.gene84551:CDS |
| TGACTGGGCAATCAATTTGA+TGG | 0.385583 | 8.4:+70168584 | MS.gene84551:CDS |
| CAGAAGCTGCTCTTCTTGAC+TGG | 0.401025 | 8.4:+70168568 | MS.gene84551:CDS |
| TGCATGAATCAATGCAGTTA+AGG | 0.415964 | 8.4:-70169086 | None:intergenic |
| GCATGAATCAATGCAGTTAA+GGG | 0.418194 | 8.4:-70169085 | None:intergenic |
| AGGAGGAAATTCATCATTGC+AGG | 0.421427 | 8.4:-70169215 | None:intergenic |
| TTTCTTCCTTGGATATTAGC+TGG | 0.437424 | 8.4:+70166587 | MS.gene84551:CDS |
| GGCTTGCTCAATTGAAATAC+CGG | 0.440128 | 8.4:-70169544 | None:intergenic |
| TCCTCTTTGTTGAAGTTGAA+AGG | 0.462988 | 8.4:-70169235 | None:intergenic |
| TGGTTTAGAGAGCTTCCAAC+TGG | 0.465706 | 8.4:+70168459 | MS.gene84551:CDS |
| CTGGCACTAGGTACCCTTGT+AGG | 0.471703 | 8.4:-70166697 | None:intergenic |
| CAGTGTTCTTATGATGATAG+AGG | 0.479488 | 8.4:+70167622 | MS.gene84551:CDS |
| TTCGAGATCAGTTAAACAAA+GGG | 0.480003 | 8.4:+70167861 | MS.gene84551:CDS |
| GGAAGGAAGAGGAGAAGCTT+GGG | 0.485623 | 8.4:+70169606 | MS.gene84551:CDS |
| GCTCCATTCTATTCTTCCTA+AGG | 0.486204 | 8.4:-70169335 | None:intergenic |
| GGGAAGGAAGAGGAGAAGCT+TGG | 0.491896 | 8.4:+70169605 | MS.gene84551:CDS |
| GTCAAGAAGAGCAGCTTCTG+TGG | 0.495179 | 8.4:-70168565 | None:intergenic |
| ACGGCGTGCGCAAGTTATGC+AGG | 0.495303 | 8.4:+70169518 | MS.gene84551:CDS |
| GCCTTCTGAGTTTCAGCCTG+AGG | 0.495415 | 8.4:+70166672 | MS.gene84551:CDS |
| TTCTCAAGGACTTCCACCTT+AGG | 0.495514 | 8.4:+70169319 | MS.gene84551:CDS |
| GAATGCGCGCAACGTAGCTA+TGG | 0.499082 | 8.4:+70168641 | MS.gene84551:CDS |
| GTCTTGCCATTGTAAATACT+AGG | 0.506258 | 8.4:+70169584 | MS.gene84551:CDS |
| TCCTTTCAACTTCAACAAAG+AGG | 0.511319 | 8.4:+70169234 | MS.gene84551:CDS |
| GGTACCCTTGTAGGAACCTC+AGG | 0.515998 | 8.4:-70166688 | None:intergenic |
| TAACAAACCTGTGTCATGTT+GGG | 0.519362 | 8.4:-70168672 | None:intergenic |
| CGTAAATACCTTAATCAAGC+CGG | 0.519512 | 8.4:-70167918 | None:intergenic |
| GTTCGAGATCAGTTAAACAA+AGG | 0.524433 | 8.4:+70167860 | MS.gene84551:CDS |
| CCACCTTAGGAAGAATAGAA+TGG | 0.525280 | 8.4:+70169332 | MS.gene84551:CDS |
| TTGCATTGCATCACTTGCTC+CGG | 0.531461 | 8.4:-70168501 | None:intergenic |
| AGAAGAGCAGCTTCTGTGGA+AGG | 0.535601 | 8.4:-70168561 | None:intergenic |
| CAAAAGCAATTGTATTCTGA+AGG | 0.538997 | 8.4:+70167676 | MS.gene84551:CDS |
| TGTAACTTGCAGTGTGGAGA+GGG | 0.539058 | 8.4:+70166558 | None:intergenic |
| CTACAAGGGTACCTAGTGCC+AGG | 0.543064 | 8.4:+70166698 | MS.gene84551:CDS |
| CCATTCTATTCTTCCTAAGG+TGG | 0.545441 | 8.4:-70169332 | None:intergenic |
| TTCAGCCTGAGGTTCCTACA+AGG | 0.552164 | 8.4:+70166683 | MS.gene84551:CDS |
| GCCATTGTAAATACTAGGGA+AGG | 0.559174 | 8.4:+70169589 | MS.gene84551:CDS |
| GCGCAAGTTATGCAGGCACC+CGG | 0.570203 | 8.4:+70169525 | MS.gene84551:CDS |
| GAAGATATGACAGCGAACAT+TGG | 0.571920 | 8.4:+70169482 | MS.gene84551:CDS |
| GTCACCATGTGAACAAATTG+AGG | 0.575603 | 8.4:+70169258 | MS.gene84551:CDS |
| TCTTGCCATTGTAAATACTA+GGG | 0.575822 | 8.4:+70169585 | MS.gene84551:CDS |
| AGAAGCTGCTCTTCTTGACT+GGG | 0.576970 | 8.4:+70168569 | MS.gene84551:CDS |
| GCATCCTCAATTTGTTCACA+TGG | 0.578905 | 8.4:-70169262 | None:intergenic |
| CATTGGTCACGATTGAGAAA+CGG | 0.582047 | 8.4:+70169499 | MS.gene84551:CDS |
| ACCTCAGGCTGAAACTCAGA+AGG | 0.584588 | 8.4:-70166673 | None:intergenic |
| AATGGAGCGTAGAGAAACTT+CGG | 0.589113 | 8.4:+70169350 | MS.gene84551:CDS |
| GTAAATACTAGGGAAGGAAG+AGG | 0.593283 | 8.4:+70169595 | MS.gene84551:CDS |
| GACACGTGTCTCACTTCGGT+TGG | 0.596127 | 8.4:-70166610 | None:intergenic |
| AGAGAATCAAGTACACCAGT+TGG | 0.600276 | 8.4:-70168474 | None:intergenic |
| CTACCAAAAGAAAATTCTCA+AGG | 0.605610 | 8.4:+70169305 | MS.gene84551:CDS |
| TTGTAACTTGCAGTGTGGAG+AGG | 0.609827 | 8.4:+70166557 | None:intergenic |
| TCTTTGTTGAAGTTGAAAGG+AGG | 0.610113 | 8.4:-70169232 | None:intergenic |
| AGTTGGAAGCTCTCTAAACC+AGG | 0.611737 | 8.4:-70168457 | None:intergenic |
| TTTCGCGCCCAACATGACAC+AGG | 0.615447 | 8.4:+70168665 | MS.gene84551:CDS |
| TCCTTCCCTAGTATTTACAA+TGG | 0.616815 | 8.4:-70169590 | None:intergenic |
| GGCTATTCTCAGCAGTAATG+CGG | 0.618302 | 8.4:-70167826 | None:intergenic |
| AGTGTTCTTATGATGATAGA+GGG | 0.624124 | 8.4:+70167623 | MS.gene84551:CDS |
| ATGTGACACGTGTCTCACTT+CGG | 0.625234 | 8.4:-70166614 | None:intergenic |
| CATGAATCAATGCAGTTAAG+GGG | 0.629505 | 8.4:-70169084 | None:intergenic |
| AAGATTGCTCTCACATAGCA+TGG | 0.632661 | 8.4:+70169183 | MS.gene84551:CDS |
| GGTTGGCCAGCTAATATCCA+AGG | 0.633161 | 8.4:-70166593 | None:intergenic |
| TCAGCCTGAGGTTCCTACAA+GGG | 0.635145 | 8.4:+70166684 | MS.gene84551:CDS |
| CTTTAAATGATGCAGTGTGA+AGG | 0.637209 | 8.4:+70167573 | MS.gene84551:intron |
| AGGAAATTCATCATTGCAGG+AGG | 0.637863 | 8.4:-70169212 | None:intergenic |
| TTTCCATGGATGAAGGCAGA+AGG | 0.638432 | 8.4:+70167797 | MS.gene84551:intron |
| AACAAAGGGATAGTGCCACA+TGG | 0.638676 | 8.4:+70167875 | MS.gene84551:CDS |
| AAGCAATTGTATTCTGAAGG+AGG | 0.641065 | 8.4:+70167679 | MS.gene84551:CDS |
| GCTTGCTCAATTGAAATACC+GGG | 0.650080 | 8.4:-70169543 | None:intergenic |
| TGGAAGGAAGTAACTTGACA+AGG | 0.651985 | 8.4:-70168545 | None:intergenic |
| TTAACAAACCTGTGTCATGT+TGG | 0.658298 | 8.4:-70168673 | None:intergenic |
| AGAGAAACTTCGGAGCTCCG+AGG | 0.659373 | 8.4:+70169360 | MS.gene84551:CDS |
| GTAACTCCAAGATACGAAAG+TGG | 0.671137 | 8.4:+70169430 | MS.gene84551:CDS |
| TGTACTTGATTCTCTCACAC+CGG | 0.686660 | 8.4:+70168482 | MS.gene84551:CDS |
| CAATGAACATCGATTCCATG+TGG | 0.724200 | 8.4:-70167890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATGAAATTTATGTAATT+TGG | + | chr8.4:70166750-70166769 | MS.gene84551:intron | 15.0% |
| !! | ATAGATATAAAAAATTTACC+TGG | - | chr8.4:70166719-70166738 | None:intergenic | 15.0% |
| !! | TTATTGTACTTACAATAAAA+TGG | + | chr8.4:70167158-70167177 | MS.gene84551:intron | 15.0% |
| !!! | TAACTATAACTATTTTCTAA+AGG | - | chr8.4:70169457-70169476 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTTTAGAATTTT+TGG | + | chr8.4:70166868-70166887 | MS.gene84551:intron | 15.0% |
| !!! | TTTTTATCATTATCTATTTC+AGG | + | chr8.4:70168434-70168453 | MS.gene84551:intron | 15.0% |
| !! | AAAATACAGATAATCAATCA+AGG | - | chr8.4:70167514-70167533 | None:intergenic | 20.0% |
| !! | AAACACTAAGTTTGATTAAT+AGG | + | chr8.4:70168155-70168174 | MS.gene84551:intron | 20.0% |
| !! | AAGTACAATAAAAGATTCAT+AGG | - | chr8.4:70167149-70167168 | None:intergenic | 20.0% |
| !! | AATGATAAAAAGATATGACA+AGG | - | chr8.4:70168425-70168444 | None:intergenic | 20.0% |
| !! | CATACTTTATCTAATTTCAA+GGG | - | chr8.4:70167035-70167054 | None:intergenic | 20.0% |
| !! | CATCTAAATTTCATATTTCA+TGG | + | chr8.4:70168823-70168842 | MS.gene84551:intron | 20.0% |
| !! | GGTTGAAAAATAAAAAGATA+CGG | - | chr8.4:70168271-70168290 | None:intergenic | 20.0% |
| !! | TCATACTTTATCTAATTTCA+AGG | - | chr8.4:70167036-70167055 | None:intergenic | 20.0% |
| !!! | ATAGTTACATGTGAATTTTA+AGG | + | chr8.4:70167761-70167780 | MS.gene84551:intron | 20.0% |
| !!! | ATTCCTCTTAAGAAAATTTT+AGG | + | chr8.4:70167058-70167077 | MS.gene84551:intron | 20.0% |
| !!! | TATCTTTTTATTTTTCAACC+TGG | + | chr8.4:70168271-70168290 | MS.gene84551:intron | 20.0% |
| !!! | TGTATTTTTCATTTCACTTT+TGG | - | chr8.4:70169023-70169042 | None:intergenic | 20.0% |
| !!! | TTCAGTCAAATGAATTTTAT+AGG | - | chr8.4:70167948-70167967 | None:intergenic | 20.0% |
| ! | AAATTGCAGAACATACTTTA+AGG | - | chr8.4:70167705-70167724 | None:intergenic | 25.0% |
| ! | ACTAAGTTTGATTAATAGGA+AGG | + | chr8.4:70168159-70168178 | MS.gene84551:intron | 25.0% |
| ! | CTCATAATTTACTGATAAGT+GGG | + | chr8.4:70168072-70168091 | MS.gene84551:intron | 25.0% |
| ! | CTTACAATAAAATGGTAGAA+TGG | + | chr8.4:70167166-70167185 | MS.gene84551:intron | 25.0% |
| ! | GCTAATTGTACAAAATATCA+GGG | - | chr8.4:70168889-70168908 | None:intergenic | 25.0% |
| ! | TAAATCCTGACTATTATGTA+TGG | + | chr8.4:70167319-70167338 | MS.gene84551:intron | 25.0% |
| ! | TAATAAGCTGAAAAATTCGA+TGG | + | chr8.4:70168928-70168947 | MS.gene84551:intron | 25.0% |
| ! | TCGTATTTGTCAAATTCATT+TGG | + | chr8.4:70167731-70167750 | MS.gene84551:intron | 25.0% |
| ! | TGCAAACTCAGATAATAAAT+TGG | - | chr8.4:70168805-70168824 | None:intergenic | 25.0% |
| ! | TGCTAATTGTACAAAATATC+AGG | - | chr8.4:70168890-70168909 | None:intergenic | 25.0% |
| !! | AAGCCTAAAATTTTCTTAAG+AGG | - | chr8.4:70167064-70167083 | None:intergenic | 25.0% |
| !! | GATATTTTGTACAATTAGCA+TGG | + | chr8.4:70168890-70168909 | MS.gene84551:intron | 25.0% |
| !! | TGCGTAACTTGTAAATTATT+TGG | + | chr8.4:70168003-70168022 | MS.gene84551:intron | 25.0% |
| !! | TTTAAAACCAGAAATGTTTC+TGG | + | chr8.4:70168742-70168761 | MS.gene84551:intron | 25.0% |
| !!! | AATGCTTTATTTCTTCTTGT+AGG | + | chr8.4:70167110-70167129 | MS.gene84551:intron | 25.0% |
| !!! | GTTACTTTTGATAGATTCAA+TGG | + | chr8.4:70166637-70166656 | MS.gene84551:CDS | 25.0% |
| !!! | GTTGATTATTTTTCTCAAAC+TGG | + | chr8.4:70168385-70168404 | MS.gene84551:intron | 25.0% |
| AAGCTGATGTAGATATTAAC+AGG | + | chr8.4:70167191-70167210 | MS.gene84551:intron | 30.0% | |
| AGTGTTCTTATGATGATAGA+GGG | + | chr8.4:70167623-70167642 | MS.gene84551:CDS | 30.0% | |
| ATCGATGTTCATTGTTTATC+CGG | + | chr8.4:70167899-70167918 | MS.gene84551:CDS | 30.0% | |
| CAAAAGCAATTGTATTCTGA+AGG | + | chr8.4:70167676-70167695 | MS.gene84551:CDS | 30.0% | |
| CTACCAAAAGAAAATTCTCA+AGG | + | chr8.4:70169305-70169324 | MS.gene84551:CDS | 30.0% | |
| GCTCATAATTTACTGATAAG+TGG | + | chr8.4:70168071-70168090 | MS.gene84551:intron | 30.0% | |
| TAAAAAATTTACCTGGCACT+AGG | - | chr8.4:70166712-70166731 | None:intergenic | 30.0% | |
| TAATCAACCAGAAACATTTC+TGG | - | chr8.4:70168752-70168771 | None:intergenic | 30.0% | |
| TCTTGCCATTGTAAATACTA+GGG | + | chr8.4:70169585-70169604 | MS.gene84551:CDS | 30.0% | |
| TTAACATTTCCAAAGCCTTT+CGG | + | chr8.4:70167975-70167994 | MS.gene84551:intron | 30.0% | |
| TTAGTATTTGTTTGTGTCTC+TGG | + | chr8.4:70166930-70166949 | MS.gene84551:intron | 30.0% | |
| TTCGAGATCAGTTAAACAAA+GGG | + | chr8.4:70167861-70167880 | MS.gene84551:CDS | 30.0% | |
| ! | AAACTAGTTTGTCAGATTTG+TGG | + | chr8.4:70167471-70167490 | MS.gene84551:intron | 30.0% |
| ! | AGTCCTTGAGAATTTTCTTT+TGG | - | chr8.4:70169311-70169330 | None:intergenic | 30.0% |
| ! | CCAACGCATACAAAATTTTA+AGG | - | chr8.4:70168046-70168065 | None:intergenic | 30.0% |
| ! | CCTTAAAATTTTGTATGCGT+TGG | + | chr8.4:70168043-70168062 | MS.gene84551:intron | 30.0% |
| ! | CTGTTCATTTTCAACAACAT+CGG | - | chr8.4:70168610-70168629 | None:intergenic | 30.0% |
| ! | GATAGATTCAATGGTTTTCT+TGG | + | chr8.4:70166646-70166665 | MS.gene84551:CDS | 30.0% |
| ! | GTTTTCCATACATAATAGTC+AGG | - | chr8.4:70167327-70167346 | None:intergenic | 30.0% |
| !!! | TTCAGATCTTTTTCAAGTGA+TGG | + | chr8.4:70169406-70169425 | MS.gene84551:CDS | 30.0% |
| AAGTTACGCAAATAACCGAA+AGG | - | chr8.4:70167993-70168012 | None:intergenic | 35.0% | |
| ACTTTCTTGTGAAATCCAGA+TGG | + | chr8.4:70169057-70169076 | MS.gene84551:intron | 35.0% | |
| ATCATTATCTATTTCAGGCC+TGG | + | chr8.4:70168439-70168458 | MS.gene84551:intron | 35.0% | |
| CACACTGCATCATTTAAAGA+CGG | - | chr8.4:70167572-70167591 | None:intergenic | 35.0% | |
| CAGTGTTCTTATGATGATAG+AGG | + | chr8.4:70167622-70167641 | MS.gene84551:CDS | 35.0% | |
| CATGAATCAATGCAGTTAAG+GGG | - | chr8.4:70169087-70169106 | None:intergenic | 35.0% | |
| CCAACTCAAAATACAATGCA+AGG | + | chr8.4:70167411-70167430 | MS.gene84551:intron | 35.0% | |
| CGTAAATACCTTAATCAAGC+CGG | - | chr8.4:70167921-70167940 | None:intergenic | 35.0% | |
| CTTTAAATGATGCAGTGTGA+AGG | + | chr8.4:70167573-70167592 | MS.gene84551:intron | 35.0% | |
| GCATGAATCAATGCAGTTAA+GGG | - | chr8.4:70169088-70169107 | None:intergenic | 35.0% | |
| GTACAATTAGCATGGCATAT+CGG | + | chr8.4:70168898-70168917 | MS.gene84551:intron | 35.0% | |
| GTCTAATTTCATGCTTTCCA+TGG | + | chr8.4:70167783-70167802 | MS.gene84551:intron | 35.0% | |
| GTCTTGCCATTGTAAATACT+AGG | + | chr8.4:70169584-70169603 | MS.gene84551:CDS | 35.0% | |
| GTGTTCCAACAATTCTTCTA+AGG | + | chr8.4:70167650-70167669 | MS.gene84551:CDS | 35.0% | |
| GTTCGAGATCAGTTAAACAA+AGG | + | chr8.4:70167860-70167879 | MS.gene84551:CDS | 35.0% | |
| TAACAAACCTGTGTCATGTT+GGG | - | chr8.4:70168675-70168694 | None:intergenic | 35.0% | |
| TATCTATTAGAACAGCAACC+AGG | - | chr8.4:70168292-70168311 | None:intergenic | 35.0% | |
| TCCTCTTTGTTGAAGTTGAA+AGG | - | chr8.4:70169238-70169257 | None:intergenic | 35.0% | |
| TCCTTCCCTAGTATTTACAA+TGG | - | chr8.4:70169593-70169612 | None:intergenic | 35.0% | |
| TCCTTTCAACTTCAACAAAG+AGG | + | chr8.4:70169234-70169253 | MS.gene84551:CDS | 35.0% | |
| TCTTTGTTGAAGTTGAAAGG+AGG | - | chr8.4:70169235-70169254 | None:intergenic | 35.0% | |
| TGCATCCTTAGAAGAATTGT+TGG | - | chr8.4:70167658-70167677 | None:intergenic | 35.0% | |
| TGCATGAATCAATGCAGTTA+AGG | - | chr8.4:70169089-70169108 | None:intergenic | 35.0% | |
| TTAACAAACCTGTGTCATGT+TGG | - | chr8.4:70168676-70168695 | None:intergenic | 35.0% | |
| TTTCTTCCTTGGATATTAGC+TGG | + | chr8.4:70166587-70166606 | MS.gene84551:CDS | 35.0% | |
| ! | AAGCAATTGTATTCTGAAGG+AGG | + | chr8.4:70167679-70167698 | MS.gene84551:CDS | 35.0% |
| ! | TTGTTTATCCGGCTTGATTA+AGG | + | chr8.4:70167910-70167929 | MS.gene84551:CDS | 35.0% |
| !! | CCTTGCATTGTATTTTGAGT+TGG | - | chr8.4:70167414-70167433 | None:intergenic | 35.0% |
| !!! | AATTTTGTATGCGTTGGCTA+TGG | + | chr8.4:70168049-70168068 | MS.gene84551:intron | 35.0% |
| AAAGGACCACTTTCGTATCT+TGG | - | chr8.4:70169439-70169458 | None:intergenic | 40.0% | |
| AAGATTGCTCTCACATAGCA+TGG | + | chr8.4:70169183-70169202 | MS.gene84551:CDS | 40.0% | |
| AATGGAGCGTAGAGAAACTT+CGG | + | chr8.4:70169350-70169369 | MS.gene84551:CDS | 40.0% | |
| ACATGTTAATCTGCGTGGTA+AGG | + | chr8.4:70167263-70167282 | MS.gene84551:intron | 40.0% | |
| AGAGAATCAAGTACACCAGT+TGG | - | chr8.4:70168477-70168496 | None:intergenic | 40.0% | |
| AGATGTTTGATCACGGACTT+CGG | - | chr8.4:70168226-70168245 | None:intergenic | 40.0% | |
| AGGAAATTCATCATTGCAGG+AGG | - | chr8.4:70169215-70169234 | None:intergenic | 40.0% | |
| AGGAGGAAATTCATCATTGC+AGG | - | chr8.4:70169218-70169237 | None:intergenic | 40.0% | |
| CATTGGTCACGATTGAGAAA+CGG | + | chr8.4:70169499-70169518 | MS.gene84551:CDS | 40.0% | |
| CCACCTTAGGAAGAATAGAA+TGG | + | chr8.4:70169332-70169351 | MS.gene84551:CDS | 40.0% | |
| CCATTCTATTCTTCCTAAGG+TGG | - | chr8.4:70169335-70169354 | None:intergenic | 40.0% | |
| GAAGATATGACAGCGAACAT+TGG | + | chr8.4:70169482-70169501 | MS.gene84551:CDS | 40.0% | |
| GAGCACAAGATGTTTGATCA+CGG | - | chr8.4:70168233-70168252 | None:intergenic | 40.0% | |
| GCCATTGTAAATACTAGGGA+AGG | + | chr8.4:70169589-70169608 | MS.gene84551:CDS | 40.0% | |
| GCTCCATTCTATTCTTCCTA+AGG | - | chr8.4:70169338-70169357 | None:intergenic | 40.0% | |
| GCTTGCTCAATTGAAATACC+GGG | - | chr8.4:70169546-70169565 | None:intergenic | 40.0% | |
| GTAAATACTAGGGAAGGAAG+AGG | + | chr8.4:70169595-70169614 | MS.gene84551:CDS | 40.0% | |
| GTAAATGAGCGAAACGAGAT+TGG | - | chr8.4:70168783-70168802 | None:intergenic | 40.0% | |
| GTAACTCCAAGATACGAAAG+TGG | + | chr8.4:70169430-70169449 | MS.gene84551:CDS | 40.0% | |
| GTCACCATGTGAACAAATTG+AGG | + | chr8.4:70169258-70169277 | MS.gene84551:CDS | 40.0% | |
| GTCTCTGGTATAGAAGATTC+TGG | + | chr8.4:70166945-70166964 | MS.gene84551:intron | 40.0% | |
| TGACTGGGCAATCAATTTGA+TGG | + | chr8.4:70168584-70168603 | MS.gene84551:CDS | 40.0% | |
| TGGAAGGAAGTAACTTGACA+AGG | - | chr8.4:70168548-70168567 | None:intergenic | 40.0% | |
| TGTACTTGATTCTCTCACAC+CGG | + | chr8.4:70168482-70168501 | MS.gene84551:CDS | 40.0% | |
| TTCATGCTTTCCATGGATGA+AGG | + | chr8.4:70167790-70167809 | MS.gene84551:intron | 40.0% | |
| TTTACAATGGCAAGACTTGC+AGG | - | chr8.4:70169580-70169599 | None:intergenic | 40.0% | |
| TTTCGACATGTTAATCTGCG+TGG | + | chr8.4:70167258-70167277 | MS.gene84551:intron | 40.0% | |
| ! | GCATCCTCAATTTGTTCACA+TGG | - | chr8.4:70169265-70169284 | None:intergenic | 40.0% |
| ! | GGCTTGCTCAATTGAAATAC+CGG | - | chr8.4:70169547-70169566 | None:intergenic | 40.0% |
| !! | CAATGAACATCGATTCCATG+TGG | - | chr8.4:70167893-70167912 | None:intergenic | 40.0% |
| !! | TGATGCAGTGTGAAGGTATT+TGG | + | chr8.4:70167580-70167599 | MS.gene84551:intron | 40.0% |
| !!! | GTCTCGATTCCTTTTTTCCT+CGG | - | chr8.4:70169380-70169399 | None:intergenic | 40.0% |
| AACAAAGGGATAGTGCCACA+TGG | + | chr8.4:70167875-70167894 | MS.gene84551:CDS | 45.0% | |
| AATCTGCGTGGTAAGGAACT+CGG | + | chr8.4:70167270-70167289 | MS.gene84551:intron | 45.0% | |
| AGAAGCTGCTCTTCTTGACT+GGG | + | chr8.4:70168569-70168588 | MS.gene84551:CDS | 45.0% | |
| AGACTTGCAGGCTTCTTAGA+TGG | - | chr8.4:70169568-70169587 | None:intergenic | 45.0% | |
| AGTTGGAAGCTCTCTAAACC+AGG | - | chr8.4:70168460-70168479 | None:intergenic | 45.0% | |
| ATGTGACACGTGTCTCACTT+CGG | - | chr8.4:70166617-70166636 | None:intergenic | 45.0% | |
| ATTCCTTCTGCCTTCATCCA+TGG | - | chr8.4:70167803-70167822 | None:intergenic | 45.0% | |
| CGCAAATAACCGAAAGGCTT+TGG | - | chr8.4:70167987-70168006 | None:intergenic | 45.0% | |
| GACTTCGGCCATTTATGCAT+AGG | - | chr8.4:70168211-70168230 | None:intergenic | 45.0% | |
| GAGGGAAGATGTTTCTTCCT+TGG | + | chr8.4:70166576-70166595 | MS.gene84551:CDS | 45.0% | |
| GATCTCGAACGAATGCTTCT+TGG | - | chr8.4:70167850-70167869 | None:intergenic | 45.0% | |
| GCTGGAGACCTATGCATAAA+TGG | + | chr8.4:70168200-70168219 | MS.gene84551:intron | 45.0% | |
| GGAAAAAAGGAATCGAGACG+AGG | + | chr8.4:70169381-70169400 | MS.gene84551:CDS | 45.0% | |
| GGCTATTCTCAGCAGTAATG+CGG | - | chr8.4:70167829-70167848 | None:intergenic | 45.0% | |
| TGGTTTAGAGAGCTTCCAAC+TGG | + | chr8.4:70168459-70168478 | MS.gene84551:CDS | 45.0% | |
| TTCTCAAGGACTTCCACCTT+AGG | + | chr8.4:70169319-70169338 | MS.gene84551:CDS | 45.0% | |
| TTGCATTGCATCACTTGCTC+CGG | - | chr8.4:70168504-70168523 | None:intergenic | 45.0% | |
| TTTCCATGGATGAAGGCAGA+AGG | + | chr8.4:70167797-70167816 | MS.gene84551:intron | 45.0% | |
| ! | AACCTCTCACCACTAGCTTA+AGG | - | chr8.4:70167299-70167318 | None:intergenic | 45.0% |
| AAGTGGGCAGTTTGTCTGAG+CGG | + | chr8.4:70168088-70168107 | MS.gene84551:intron | 50.0% | |
| ACCTCAGGCTGAAACTCAGA+AGG | - | chr8.4:70166676-70166695 | None:intergenic | 50.0% | |
| ACTCGGACACCTTAAGCTAG+TGG | + | chr8.4:70167287-70167306 | MS.gene84551:intron | 50.0% | |
| AGAAGAGCAGCTTCTGTGGA+AGG | - | chr8.4:70168564-70168583 | None:intergenic | 50.0% | |
| ATAGGTCTCCAGCTGTAGAG+TGG | - | chr8.4:70168193-70168212 | None:intergenic | 50.0% | |
| CACCTTAAGCTAGTGGTGAG+AGG | + | chr8.4:70167294-70167313 | MS.gene84551:intron | 50.0% | |
| CAGAAGCTGCTCTTCTTGAC+TGG | + | chr8.4:70168568-70168587 | MS.gene84551:CDS | 50.0% | |
| GGAAGGAAGAGGAGAAGCTT+GGG | + | chr8.4:70169606-70169625 | MS.gene84551:CDS | 50.0% | |
| GTAGTTCAGACGCTGCTAAG+CGG | + | chr8.4:70167357-70167376 | MS.gene84551:intron | 50.0% | |
| GTCAAGAAGAGCAGCTTCTG+TGG | - | chr8.4:70168568-70168587 | None:intergenic | 50.0% | |
| TACTGCATCCACTCTACAGC+TGG | + | chr8.4:70168182-70168201 | MS.gene84551:intron | 50.0% | |
| TCAGCCTGAGGTTCCTACAA+GGG | + | chr8.4:70166684-70166703 | MS.gene84551:CDS | 50.0% | |
| TTCAGCCTGAGGTTCCTACA+AGG | + | chr8.4:70166683-70166702 | MS.gene84551:CDS | 50.0% | |
| TTCGGAGCTCCGAGGAAAAA+AGG | + | chr8.4:70169368-70169387 | MS.gene84551:CDS | 50.0% | |
| ! | GGTTGGCCAGCTAATATCCA+AGG | - | chr8.4:70166596-70166615 | None:intergenic | 50.0% |
| AGAGAAACTTCGGAGCTCCG+AGG | + | chr8.4:70169360-70169379 | MS.gene84551:CDS | 55.0% | |
| AGTGGGCAGTTTGTCTGAGC+GGG | + | chr8.4:70168089-70168108 | MS.gene84551:intron | 55.0% | |
| CAGTTAAGGGGTCTGCCATC+TGG | - | chr8.4:70169075-70169094 | None:intergenic | 55.0% | |
| CTGGCACTAGGTACCCTTGT+AGG | - | chr8.4:70166700-70166719 | None:intergenic | 55.0% | |
| GAATGCGCGCAACGTAGCTA+TGG | + | chr8.4:70168641-70168660 | MS.gene84551:CDS | 55.0% | |
| GACACGTGTCTCACTTCGGT+TGG | - | chr8.4:70166613-70166632 | None:intergenic | 55.0% | |
| GCCTTCTGAGTTTCAGCCTG+AGG | + | chr8.4:70166672-70166691 | MS.gene84551:CDS | 55.0% | |
| GGGAAGGAAGAGGAGAAGCT+TGG | + | chr8.4:70169605-70169624 | MS.gene84551:CDS | 55.0% | |
| GGTACCCTTGTAGGAACCTC+AGG | - | chr8.4:70166691-70166710 | None:intergenic | 55.0% | |
| TTTCGCGCCCAACATGACAC+AGG | + | chr8.4:70168665-70168684 | MS.gene84551:CDS | 55.0% | |
| !! | CTACAAGGGTACCTAGTGCC+AGG | + | chr8.4:70166698-70166717 | MS.gene84551:CDS | 55.0% |
| ACGGCGTGCGCAAGTTATGC+AGG | + | chr8.4:70169518-70169537 | MS.gene84551:CDS | 60.0% | |
| GAGCGGGGAAGGTTGCTCAA+GGG | + | chr8.4:70168105-70168124 | MS.gene84551:intron | 60.0% | |
| GCAGTTTGTCTGAGCGGGGA+AGG | + | chr8.4:70168094-70168113 | MS.gene84551:intron | 60.0% | |
| GCGCAAGTTATGCAGGCACC+CGG | + | chr8.4:70169525-70169544 | MS.gene84551:CDS | 60.0% | |
| GTGGGCAGTTTGTCTGAGCG+GGG | + | chr8.4:70168090-70168109 | MS.gene84551:intron | 60.0% | |
| TGAGCGGGGAAGGTTGCTCA+AGG | + | chr8.4:70168104-70168123 | MS.gene84551:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 70166570 | 70169633 | 70166570 | ID=MS.gene84551 |
| chr8.4 | mRNA | 70166570 | 70169633 | 70166570 | ID=MS.gene84551.t1;Parent=MS.gene84551 |
| chr8.4 | exon | 70166570 | 70166719 | 70166570 | ID=MS.gene84551.t1.exon1;Parent=MS.gene84551.t1 |
| chr8.4 | CDS | 70166570 | 70166719 | 70166570 | ID=cds.MS.gene84551.t1;Parent=MS.gene84551.t1 |
| chr8.4 | exon | 70167588 | 70167708 | 70167588 | ID=MS.gene84551.t1.exon2;Parent=MS.gene84551.t1 |
| chr8.4 | CDS | 70167588 | 70167708 | 70167588 | ID=cds.MS.gene84551.t1;Parent=MS.gene84551.t1 |
| chr8.4 | exon | 70167812 | 70167931 | 70167812 | ID=MS.gene84551.t1.exon3;Parent=MS.gene84551.t1 |
| chr8.4 | CDS | 70167812 | 70167931 | 70167812 | ID=cds.MS.gene84551.t1;Parent=MS.gene84551.t1 |
| chr8.4 | exon | 70168456 | 70168686 | 70168456 | ID=MS.gene84551.t1.exon4;Parent=MS.gene84551.t1 |
| chr8.4 | CDS | 70168456 | 70168686 | 70168456 | ID=cds.MS.gene84551.t1;Parent=MS.gene84551.t1 |
| chr8.4 | exon | 70169076 | 70169633 | 70169076 | ID=MS.gene84551.t1.exon5;Parent=MS.gene84551.t1 |
| chr8.4 | CDS | 70169076 | 70169633 | 70169076 | ID=cds.MS.gene84551.t1;Parent=MS.gene84551.t1 |
| Gene Sequence |
| Protein sequence |
