Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060523.t1 | AFK35236.1 | 98.9 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 3.70E-101 | 377.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060523.t1 | P92964 | 75.6 | 180 | 41 | 2 | 1 | 177 | 1 | 180 | 6.2e-73 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060523.t1 | G7LAU9 | 98.9 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 2.7e-101 | 377.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060523 | MS.gene011973 | PPI |
| MS.gene053099 | MS.gene060523 | PPI |
| MS.gene060523 | MS.gene047872 | PPI |
| MS.gene82776 | MS.gene060523 | PPI |
| MS.gene032681 | MS.gene060523 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060523.t1 | MTR_8g027190 | 98.795 | 249 | 3 | 0 | 1 | 249 | 1 | 249 | 6.44e-179 | 491 |
| MS.gene060523.t1 | MTR_8g027190 | 97.696 | 217 | 5 | 0 | 33 | 249 | 19 | 235 | 9.81e-153 | 424 |
| MS.gene060523.t1 | MTR_8g027190 | 95.045 | 222 | 11 | 0 | 28 | 249 | 8 | 229 | 2.61e-152 | 423 |
| MS.gene060523.t1 | MTR_8g032590 | 53.992 | 263 | 89 | 4 | 1 | 243 | 1 | 251 | 3.11e-84 | 253 |
| MS.gene060523.t1 | MTR_1g101520 | 56.226 | 265 | 89 | 7 | 1 | 248 | 1 | 255 | 8.22e-79 | 243 |
| MS.gene060523.t1 | MTR_8g032590 | 51.965 | 229 | 78 | 4 | 35 | 243 | 24 | 240 | 8.13e-64 | 201 |
| MS.gene060523.t1 | MTR_8g032590 | 51.584 | 221 | 75 | 4 | 43 | 243 | 2 | 210 | 8.55e-59 | 187 |
| MS.gene060523.t1 | MTR_1g101520 | 54.709 | 223 | 74 | 7 | 43 | 248 | 2 | 214 | 4.15e-54 | 178 |
| MS.gene060523.t1 | MTR_8g058530 | 31.953 | 169 | 93 | 5 | 2 | 150 | 7 | 173 | 6.32e-14 | 70.5 |
| MS.gene060523.t1 | MTR_7g108810 | 32.716 | 162 | 87 | 5 | 2 | 143 | 108 | 267 | 2.42e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060523.t1 | AT3G61860 | 71.212 | 264 | 59 | 5 | 1 | 248 | 1 | 263 | 2.53e-119 | 341 |
| MS.gene060523.t1 | AT2G46610 | 67.059 | 255 | 71 | 5 | 1 | 248 | 1 | 249 | 5.02e-109 | 315 |
| MS.gene060523.t1 | AT2G46610 | 64.889 | 225 | 66 | 5 | 31 | 248 | 5 | 223 | 4.26e-89 | 263 |
| MS.gene060523.t1 | AT2G46610 | 66.063 | 221 | 62 | 5 | 35 | 248 | 15 | 229 | 1.45e-88 | 262 |
| MS.gene060523.t1 | AT2G46610 | 66.063 | 221 | 62 | 5 | 35 | 248 | 15 | 229 | 1.45e-88 | 262 |
| MS.gene060523.t1 | AT4G25500 | 53.962 | 265 | 101 | 7 | 1 | 249 | 1 | 260 | 3.06e-78 | 240 |
| MS.gene060523.t1 | AT4G25500 | 53.962 | 265 | 101 | 7 | 1 | 249 | 1 | 260 | 3.06e-78 | 240 |
| MS.gene060523.t1 | AT5G52040 | 51.418 | 282 | 91 | 8 | 1 | 243 | 1 | 275 | 2.88e-73 | 227 |
| MS.gene060523.t1 | AT5G52040 | 51.418 | 282 | 91 | 8 | 1 | 243 | 1 | 275 | 2.93e-73 | 227 |
| MS.gene060523.t1 | AT4G25500 | 51.739 | 230 | 90 | 7 | 36 | 249 | 3 | 227 | 1.89e-57 | 186 |
| MS.gene060523.t1 | AT4G25500 | 51.739 | 230 | 90 | 7 | 36 | 249 | 3 | 227 | 1.89e-57 | 186 |
| MS.gene060523.t1 | AT4G25500 | 51.739 | 230 | 90 | 7 | 36 | 249 | 15 | 239 | 5.44e-57 | 185 |
| MS.gene060523.t1 | AT4G25500 | 51.739 | 230 | 90 | 7 | 36 | 249 | 15 | 239 | 5.44e-57 | 185 |
| MS.gene060523.t1 | AT4G25500 | 51.739 | 230 | 90 | 7 | 36 | 249 | 15 | 239 | 5.44e-57 | 185 |
| MS.gene060523.t1 | AT4G25500 | 51.739 | 230 | 90 | 7 | 36 | 249 | 15 | 239 | 5.44e-57 | 185 |
| MS.gene060523.t1 | AT5G52040 | 48.583 | 247 | 81 | 8 | 36 | 243 | 3 | 242 | 4.33e-52 | 172 |
| MS.gene060523.t1 | AT5G52040 | 48.583 | 247 | 81 | 8 | 36 | 243 | 3 | 242 | 4.49e-52 | 172 |
| MS.gene060523.t1 | AT5G52040 | 48.374 | 246 | 81 | 8 | 37 | 243 | 10 | 248 | 1.11e-50 | 168 |
| MS.gene060523.t1 | AT5G52040 | 47.500 | 240 | 80 | 8 | 43 | 243 | 2 | 234 | 7.67e-47 | 158 |
| MS.gene060523.t1 | AT5G52040 | 47.500 | 240 | 80 | 8 | 43 | 243 | 2 | 234 | 7.67e-47 | 158 |
| MS.gene060523.t1 | AT2G43410 | 27.368 | 190 | 110 | 9 | 4 | 185 | 20 | 189 | 9.15e-12 | 65.1 |
| MS.gene060523.t1 | AT2G43410 | 27.368 | 190 | 110 | 9 | 4 | 185 | 20 | 189 | 9.15e-12 | 65.1 |
| MS.gene060523.t1 | AT2G43410 | 27.368 | 190 | 110 | 9 | 4 | 185 | 20 | 189 | 9.15e-12 | 65.1 |
| MS.gene060523.t1 | AT2G43410 | 27.368 | 190 | 110 | 9 | 4 | 185 | 20 | 189 | 1.11e-11 | 64.7 |
| MS.gene060523.t1 | AT2G43410 | 27.368 | 190 | 110 | 9 | 4 | 185 | 20 | 189 | 1.11e-11 | 64.7 |
| MS.gene060523.t1 | AT1G02840 | 45.000 | 80 | 37 | 2 | 2 | 76 | 7 | 84 | 1.33e-11 | 63.5 |
| MS.gene060523.t1 | AT1G02840 | 45.000 | 80 | 37 | 2 | 2 | 76 | 7 | 84 | 1.56e-11 | 63.2 |
| MS.gene060523.t1 | AT1G02840 | 45.000 | 80 | 37 | 2 | 2 | 76 | 7 | 84 | 1.56e-11 | 63.2 |
| MS.gene060523.t1 | AT1G02840 | 45.000 | 80 | 37 | 2 | 2 | 76 | 7 | 84 | 1.56e-11 | 63.2 |
| MS.gene060523.t1 | AT1G02840 | 45.000 | 80 | 37 | 2 | 2 | 76 | 7 | 84 | 1.84e-11 | 63.2 |
Find 74 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGACACTTTAAACCTTA+TGG | 0.222757 | 8.1:-75163913 | MS.gene060523:CDS |
| ATAGAGTCTTTGTGGGCTTC+TGG | 0.278090 | 8.1:+75163980 | None:intergenic |
| CCTCATATTTGTACACTCTA+AGG | 0.314870 | 8.1:+75163816 | None:intergenic |
| GTCTTTGTGGGCTTCTGGTT+TGG | 0.315775 | 8.1:+75163985 | None:intergenic |
| CTGCGGTATCTGCCATATTC+AGG | 0.327516 | 8.1:+75163437 | None:intergenic |
| TCACTAACTCTAGTGCGAAT+TGG | 0.336741 | 8.1:+75163940 | None:intergenic |
| GGCTATCTGTGGAGTGGGCT+AGG | 0.362539 | 8.1:-75164157 | MS.gene060523:CDS |
| AGTGACAGGGTCGACAATTA+TGG | 0.370425 | 8.1:-75163641 | MS.gene060523:CDS |
| CACTAACTCTAGTGCGAATT+GGG | 0.380353 | 8.1:+75163941 | None:intergenic |
| AGGAATAGGAGTCCTGATTA+TGG | 0.387478 | 8.1:-75163473 | MS.gene060523:CDS |
| CTCCTATTCCTGCCATAATC+AGG | 0.390777 | 8.1:+75163485 | None:intergenic |
| TCCAAATTTCCAGCGAAAAC+CGG | 0.392892 | 8.1:+75165596 | None:intergenic |
| TTGCTCTTGCAGTAAGATAC+TGG | 0.395107 | 8.1:-75163702 | MS.gene060523:intron |
| AGGCGGAGGAGTCCTGATTA+TGG | 0.398474 | 8.1:-75163497 | MS.gene060523:CDS |
| AGAGACACTTTAAACCTTAT+GGG | 0.400181 | 8.1:-75163912 | MS.gene060523:CDS |
| GCGCTTGACAATATTCCATT+TGG | 0.401690 | 8.1:-75164194 | MS.gene060523:CDS |
| CTACGAGGACGGCCATAGTC+TGG | 0.401940 | 8.1:+75163551 | None:intergenic |
| CTCCTGTTCCTGCCATAATC+AGG | 0.406180 | 8.1:+75163461 | None:intergenic |
| AGGAACAGGAGTCCTGAATA+TGG | 0.409716 | 8.1:-75163449 | MS.gene060523:CDS |
| CTTGGTCGCCTGCGATAACC+TGG | 0.421728 | 8.1:+75163575 | None:intergenic |
| AATCACAAATAGAGTCTTTG+TGG | 0.433878 | 8.1:+75163972 | None:intergenic |
| TCAGGACTCCTCCGCCTGTC+CGG | 0.438117 | 8.1:+75163503 | None:intergenic |
| GTCCTGATTATGGCAGGAAC+AGG | 0.465754 | 8.1:-75163463 | MS.gene060523:CDS |
| CTCTGAGGGATGATAGTGAC+AGG | 0.470525 | 8.1:-75163655 | MS.gene060523:CDS |
| TCGCCTGCGATAACCTGGAC+TGG | 0.471164 | 8.1:+75163580 | None:intergenic |
| ACATGATGAAGCGGCCCATA+AGG | 0.474793 | 8.1:+75163898 | None:intergenic |
| CGCCTGCGATAACCTGGACT+GGG | 0.476215 | 8.1:+75163581 | None:intergenic |
| ATCACAAATAGAGTCTTTGT+GGG | 0.479035 | 8.1:+75163973 | None:intergenic |
| AGGCGACCAAGTCCAGACTA+TGG | 0.483060 | 8.1:-75163563 | MS.gene060523:CDS |
| GAACGTGTTGACATGAAATC+TGG | 0.486241 | 8.1:-75165518 | MS.gene060523:intron |
| GTCTGTGGAGTATGCTCTGA+GGG | 0.501476 | 8.1:-75163669 | MS.gene060523:CDS |
| GTCCTGATTATGGCAGGAAT+AGG | 0.505340 | 8.1:-75163487 | MS.gene060523:CDS |
| GGCAGTCCCAGAAGAGGAGG+GGG | 0.518717 | 8.1:-75163617 | MS.gene060523:CDS |
| CTCGTAGTCCTGTGTATGAT+AGG | 0.525796 | 8.1:-75163535 | MS.gene060523:CDS |
| CTTGCTAGATCTCCCAGTCC+AGG | 0.540800 | 8.1:-75163593 | MS.gene060523:CDS |
| CTTGCAGTAAGATACTGGAT+AGG | 0.543043 | 8.1:-75163697 | MS.gene060523:intron |
| CCTTAGAGTGTACAAATATG+AGG | 0.549055 | 8.1:-75163816 | MS.gene060523:intron |
| GAACGTGGGCGTCACCGTGA+TGG | 0.553136 | 8.1:-75164015 | MS.gene060523:CDS |
| CGTCGCTTGTCATAACCAAA+TGG | 0.554953 | 8.1:+75164179 | None:intergenic |
| GCTATCTGTGGAGTGGGCTA+GGG | 0.556063 | 8.1:-75164156 | MS.gene060523:intron |
| CTCCCAGTCCAGGTTATCGC+AGG | 0.556272 | 8.1:-75163583 | MS.gene060523:CDS |
| CCTGTGTATGATAGGTATAG+TGG | 0.556286 | 8.1:-75163527 | MS.gene060523:CDS |
| CTGAATATGGCAGATACCGC+AGG | 0.560299 | 8.1:-75163436 | MS.gene060523:intron |
| TTGCAGTAAGATACTGGATA+GGG | 0.567226 | 8.1:-75163696 | MS.gene060523:intron |
| GGAGGAGTCCTGATTATGGC+AGG | 0.568022 | 8.1:-75163493 | MS.gene060523:CDS |
| GGTGGCAGTCCCAGAAGAGG+AGG | 0.570458 | 8.1:-75163620 | MS.gene060523:CDS |
| ATAGGAGTCCTGATTATGGC+AGG | 0.570791 | 8.1:-75163469 | MS.gene060523:CDS |
| GGTTTGGCTTTGAGCCATCA+CGG | 0.574706 | 8.1:+75164001 | None:intergenic |
| ACTGGATAGGGTGGTGTCTG+TGG | 0.574929 | 8.1:-75163684 | MS.gene060523:CDS |
| TAAGTTCTTGACCTTCGCAC+TGG | 0.577328 | 8.1:+75163324 | None:intergenic |
| TTCATCATGTTCGAATTCGT+CGG | 0.579765 | 8.1:-75163885 | MS.gene060523:CDS |
| GTGGCAGTCCCAGAAGAGGA+GGG | 0.580855 | 8.1:-75163619 | MS.gene060523:CDS |
| CGAATTCGAACATGATGAAG+CGG | 0.587916 | 8.1:+75163889 | None:intergenic |
| GCGACGGCTATCTGTGGAGT+GGG | 0.593866 | 8.1:-75164162 | MS.gene060523:CDS |
| GAAGGAGGAAAAGATGAGGC+CGG | 0.594654 | 8.1:-75165615 | None:intergenic |
| ATAGGTATAGTGGACCGGAC+AGG | 0.595852 | 8.1:-75163517 | MS.gene060523:CDS |
| GTATGATAGGTATAGTGGAC+CGG | 0.598217 | 8.1:-75163522 | MS.gene060523:CDS |
| ATAGTGGACCGGACAGGCGG+AGG | 0.599511 | 8.1:-75163511 | MS.gene060523:CDS |
| TGGCAGTCCCAGAAGAGGAG+GGG | 0.613456 | 8.1:-75163618 | MS.gene060523:CDS |
| GGACGGCCATAGTCTGGACT+TGG | 0.614839 | 8.1:+75163557 | None:intergenic |
| TGACAAGCGACGGCTATCTG+TGG | 0.625155 | 8.1:-75164168 | MS.gene060523:CDS |
| CAGTAAGATACTGGATAGGG+TGG | 0.630521 | 8.1:-75163693 | MS.gene060523:CDS |
| AGCGACGGCTATCTGTGGAG+TGG | 0.634117 | 8.1:-75164163 | MS.gene060523:CDS |
| ATTTGTGCAGTATGAAACAC+AGG | 0.636540 | 8.1:-75163854 | MS.gene060523:CDS |
| ACAGTCGTTCACCAGTGCGA+AGG | 0.644913 | 8.1:-75163335 | MS.gene060523:intron |
| TATGGTGGCAGTCCCAGAAG+AGG | 0.645974 | 8.1:-75163623 | MS.gene060523:CDS |
| CATTTGGTTATGACAAGCGA+CGG | 0.649124 | 8.1:-75164178 | MS.gene060523:CDS |
| CATACACAGGACTACGAGGA+CGG | 0.652411 | 8.1:+75163540 | None:intergenic |
| CCACTATACCTATCATACAC+AGG | 0.654929 | 8.1:+75163527 | None:intergenic |
| GGTATAGTGGACCGGACAGG+CGG | 0.664021 | 8.1:-75163514 | MS.gene060523:CDS |
| TGTCTGTGGAGTATGCTCTG+AGG | 0.665943 | 8.1:-75163670 | MS.gene060523:CDS |
| GACAGGGTCGACAATTATGG+TGG | 0.677035 | 8.1:-75163638 | MS.gene060523:CDS |
| CTATCATACACAGGACTACG+AGG | 0.686727 | 8.1:+75163536 | None:intergenic |
| TCTGAGGGATGATAGTGACA+GGG | 0.724869 | 8.1:-75163654 | MS.gene060523:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATAAATCATAAAACT+TGG | + | chr8.1:75163598-75163617 | None:intergenic | 15.0% |
| !!! | AATAATGAATTTTTTAGTGT+TGG | - | chr8.1:75163662-75163681 | MS.gene060523:CDS | 15.0% |
| !! | AGAAAAACTTAAAAAACCAA+AGG | + | chr8.1:75164088-75164107 | None:intergenic | 20.0% |
| !! | AGAATAAATAAGTCGAAAAA+AGG | + | chr8.1:75165559-75165578 | None:intergenic | 20.0% |
| !!! | TAAGTGATTTGTTTTCATTT+TGG | - | chr8.1:75164881-75164900 | MS.gene060523:intron | 20.0% |
| ! | AAAAAAAAATTTGCAGAGGT+TGG | + | chr8.1:75164166-75164185 | None:intergenic | 25.0% |
| ! | AAGAGATTTCAGAAATAGAA+GGG | + | chr8.1:75164389-75164408 | None:intergenic | 25.0% |
| ! | AAGGTTTAAATCCAAAATTC+AGG | + | chr8.1:75164457-75164476 | None:intergenic | 25.0% |
| ! | CAACATGTACAATTAATAAC+TGG | - | chr8.1:75165190-75165209 | MS.gene060523:intron | 25.0% |
| ! | CTTAAGTTCATATTATTCTC+AGG | + | chr8.1:75164865-75164884 | None:intergenic | 25.0% |
| ! | TTCCAAAAAAAAATTTGCAG+AGG | + | chr8.1:75164170-75164189 | None:intergenic | 25.0% |
| !!! | AAACCAAAGGATTTTTTCAA+AGG | + | chr8.1:75164075-75164094 | None:intergenic | 25.0% |
| !!! | AACCTCTGCAAATTTTTTTT+TGG | - | chr8.1:75164165-75164184 | MS.gene060523:CDS | 25.0% |
| !!! | CAAATCATGATTGCTTTTAA+AGG | + | chr8.1:75164476-75164495 | None:intergenic | 25.0% |
| AATCACAAATAGAGTCTTTG+TGG | + | chr8.1:75164956-75164975 | None:intergenic | 30.0% | |
| AGAGACACTTTAAACCTTAT+GGG | - | chr8.1:75165013-75165032 | MS.gene060523:intron | 30.0% | |
| AGTTGTAGTTTATGGTATGA+GGG | - | chr8.1:75163736-75163755 | MS.gene060523:intron | 30.0% | |
| ATCACAAATAGAGTCTTTGT+GGG | + | chr8.1:75164955-75164974 | None:intergenic | 30.0% | |
| CAAGAGATTTCAGAAATAGA+AGG | + | chr8.1:75164390-75164409 | None:intergenic | 30.0% | |
| ! | ATGCCTTTGAAAAAATCCTT+TGG | - | chr8.1:75164069-75164088 | MS.gene060523:intron | 30.0% |
| ! | GAAAATCGAGTTGTAGTTTA+TGG | - | chr8.1:75163728-75163747 | MS.gene060523:intron | 30.0% |
| ! | TTAAGTTTTTCTTTTGACGC+AGG | - | chr8.1:75164096-75164115 | MS.gene060523:intron | 30.0% |
| !! | ATTCTAGCTTAACCCTTAAT+TGG | - | chr8.1:75163530-75163549 | MS.gene060523:CDS | 30.0% |
| !! | GATTTGTTTTCATTTTGGCA+GGG | - | chr8.1:75164886-75164905 | MS.gene060523:intron | 30.0% |
| !! | TTCTAGCTTAACCCTTAATT+GGG | - | chr8.1:75163531-75163550 | MS.gene060523:CDS | 30.0% |
| !!! | TCTAATTTCAGTTTTGTTGC+AGG | - | chr8.1:75164656-75164675 | MS.gene060523:intron | 30.0% |
| !!! | TGATTTGTTTTCATTTTGGC+AGG | - | chr8.1:75164885-75164904 | MS.gene060523:intron | 30.0% |
| ACAACACCTGAATATAAGTG+TGG | + | chr8.1:75164539-75164558 | None:intergenic | 35.0% | |
| AGTTCATATTATTCTCAGGC+AGG | + | chr8.1:75164861-75164880 | None:intergenic | 35.0% | |
| ATAACATAGTGCCCCAATTA+AGG | + | chr8.1:75163546-75163565 | None:intergenic | 35.0% | |
| ATCAGTCCACACTTATATTC+AGG | - | chr8.1:75164530-75164549 | MS.gene060523:intron | 35.0% | |
| ATTTGTGCAGTATGAAACAC+AGG | - | chr8.1:75165071-75165090 | MS.gene060523:intron | 35.0% | |
| CAATCAGAACTGATCTTAGA+GGG | - | chr8.1:75164289-75164308 | MS.gene060523:intron | 35.0% | |
| CCTCATATTTGTACACTCTA+AGG | + | chr8.1:75165112-75165131 | None:intergenic | 35.0% | |
| CCTTAGAGTGTACAAATATG+AGG | - | chr8.1:75165109-75165128 | MS.gene060523:intron | 35.0% | |
| CTAGCAGTGTTGTCAAATAT+CGG | - | chr8.1:75163863-75163882 | MS.gene060523:CDS | 35.0% | |
| GACTTCAAATACAATACCTG+CGG | + | chr8.1:75165508-75165527 | None:intergenic | 35.0% | |
| GAGAGACACTTTAAACCTTA+TGG | - | chr8.1:75165012-75165031 | MS.gene060523:intron | 35.0% | |
| GAGTTGTAGTTTATGGTATG+AGG | - | chr8.1:75163735-75163754 | MS.gene060523:intron | 35.0% | |
| GATGTAGGCTATTGTAAACT+AGG | - | chr8.1:75163760-75163779 | MS.gene060523:intron | 35.0% | |
| GTATTCCTTTGTTCCTAACA+GGG | - | chr8.1:75164557-75164576 | MS.gene060523:intron | 35.0% | |
| TAACAGGGAAAATGATTTCC+TGG | - | chr8.1:75164572-75164591 | MS.gene060523:intron | 35.0% | |
| TAACATAGTGCCCCAATTAA+GGG | + | chr8.1:75163545-75163564 | None:intergenic | 35.0% | |
| TCAATCAGAACTGATCTTAG+AGG | - | chr8.1:75164288-75164307 | MS.gene060523:intron | 35.0% | |
| TGTATTCCTTTGTTCCTAAC+AGG | - | chr8.1:75164556-75164575 | MS.gene060523:intron | 35.0% | |
| TTCATCATGTTCGAATTCGT+CGG | - | chr8.1:75165040-75165059 | MS.gene060523:intron | 35.0% | |
| TTGCAGTAAGATACTGGATA+GGG | - | chr8.1:75165229-75165248 | MS.gene060523:intron | 35.0% | |
| ! | ACAATCTCAGACCTGAATTT+TGG | - | chr8.1:75164443-75164462 | MS.gene060523:intron | 35.0% |
| ! | AGGAAATCATTTTCCCTGTT+AGG | + | chr8.1:75164573-75164592 | None:intergenic | 35.0% |
| ! | ATTTTCCCTGTTAGGAACAA+AGG | + | chr8.1:75164565-75164584 | None:intergenic | 35.0% |
| ! | TCTAGCTTAACCCTTAATTG+GGG | - | chr8.1:75163532-75163551 | MS.gene060523:CDS | 35.0% |
| !! | GAACGCTTGTTTTCAAAGTA+TGG | - | chr8.1:75163377-75163396 | MS.gene060523:intron | 35.0% |
| AAACATGATCGCTAAAGCAC+TGG | + | chr8.1:75164799-75164818 | None:intergenic | 40.0% | |
| AATATGCTGAGCATCTGTCT+TGG | - | chr8.1:75164136-75164155 | MS.gene060523:intron | 40.0% | |
| AATCTCTTGTGCTGTCTGAA+TGG | - | chr8.1:75164401-75164420 | MS.gene060523:intron | 40.0% | |
| ACCCACAATGACACAAATTG+GGG | + | chr8.1:75163630-75163649 | None:intergenic | 40.0% | |
| AGAAAATGCAGATCTGTGGA+TGG | + | chr8.1:75164213-75164232 | None:intergenic | 40.0% | |
| AGACCCACAATGACACAAAT+TGG | + | chr8.1:75163632-75163651 | None:intergenic | 40.0% | |
| AGGAATAGGAGTCCTGATTA+TGG | - | chr8.1:75165452-75165471 | MS.gene060523:intron | 40.0% | |
| ATCCAAATTCCAGAACATGG+TGG | + | chr8.1:75163803-75163822 | None:intergenic | 40.0% | |
| CACTAACTCTAGTGCGAATT+GGG | + | chr8.1:75164987-75165006 | None:intergenic | 40.0% | |
| CATTTGGTTATGACAAGCGA+CGG | - | chr8.1:75164747-75164766 | MS.gene060523:intron | 40.0% | |
| CCACTATACCTATCATACAC+AGG | + | chr8.1:75165401-75165420 | None:intergenic | 40.0% | |
| CCTATCCAAATTCCAGAACA+TGG | + | chr8.1:75163806-75163825 | None:intergenic | 40.0% | |
| CCTGTGTATGATAGGTATAG+TGG | - | chr8.1:75165398-75165417 | MS.gene060523:intron | 40.0% | |
| CGAATTCGAACATGATGAAG+CGG | + | chr8.1:75165039-75165058 | None:intergenic | 40.0% | |
| CTATTGTAAACTAGGCCCTA+GGG | - | chr8.1:75163768-75163787 | MS.gene060523:intron | 40.0% | |
| CTTGCAGTAAGATACTGGAT+AGG | - | chr8.1:75165228-75165247 | MS.gene060523:intron | 40.0% | |
| GACCCACAATGACACAAATT+GGG | + | chr8.1:75163631-75163650 | None:intergenic | 40.0% | |
| GATGAGAAAATGCAGATCTG+TGG | + | chr8.1:75164217-75164236 | None:intergenic | 40.0% | |
| GCGCTTGACAATATTCCATT+TGG | - | chr8.1:75164731-75164750 | MS.gene060523:intron | 40.0% | |
| GGGAAAATGATTTCCTGGTT+TGG | - | chr8.1:75164577-75164596 | MS.gene060523:intron | 40.0% | |
| TCACTAACTCTAGTGCGAAT+TGG | + | chr8.1:75164988-75165007 | None:intergenic | 40.0% | |
| TCCAAATTTCCAGCGAAAAC+CGG | + | chr8.1:75163332-75163351 | None:intergenic | 40.0% | |
| TCTGAATGGAGAATCATGCT+TGG | - | chr8.1:75164415-75164434 | MS.gene060523:intron | 40.0% | |
| TGGAATTTGGATAGGAGTGA+TGG | - | chr8.1:75163811-75163830 | MS.gene060523:intron | 40.0% | |
| TGTCATTGTGGGTCTAAGAA+CGG | - | chr8.1:75163637-75163656 | MS.gene060523:CDS | 40.0% | |
| TGTCCCGATGGAAAAAGAAA+CGG | - | chr8.1:75164030-75164049 | MS.gene060523:intron | 40.0% | |
| TTATGGTATGAGGGTGATGT+AGG | - | chr8.1:75163745-75163764 | MS.gene060523:intron | 40.0% | |
| TTGCTCTTGCAGTAAGATAC+TGG | - | chr8.1:75165223-75165242 | MS.gene060523:intron | 40.0% | |
| ! | ACCCCAATTTGTGTCATTGT+GGG | - | chr8.1:75163626-75163645 | MS.gene060523:CDS | 40.0% |
| ! | GAACGTGTTGACATGAAATC+TGG | - | chr8.1:75163407-75163426 | MS.gene060523:intron | 40.0% |
| ! | GTGCTTTAGCGATCATGTTT+TGG | - | chr8.1:75164799-75164818 | MS.gene060523:intron | 40.0% |
| ! | TACCCCAATTTGTGTCATTG+TGG | - | chr8.1:75163625-75163644 | MS.gene060523:CDS | 40.0% |
| ! | TTCTTTTTCCATCGGGACAT+AGG | + | chr8.1:75164029-75164048 | None:intergenic | 40.0% |
| !! | AACCACCATGTTCTGGAATT+TGG | - | chr8.1:75163798-75163817 | MS.gene060523:intron | 40.0% |
| !! | CCATGTTCTGGAATTTGGAT+AGG | - | chr8.1:75163803-75163822 | MS.gene060523:intron | 40.0% |
| !! | GTATGATAGGTATAGTGGAC+CGG | - | chr8.1:75165403-75165422 | MS.gene060523:intron | 40.0% |
| !! | TCTGCCGTTTCTTTTTCCAT+CGG | + | chr8.1:75164037-75164056 | None:intergenic | 40.0% |
| ACCACCATATCTGAGTATGG+GGG | + | chr8.1:75163942-75163961 | None:intergenic | 45.0% | |
| AGGAACAGGAGTCCTGAATA+TGG | - | chr8.1:75165476-75165495 | MS.gene060523:intron | 45.0% | |
| AGTGACAGGGTCGACAATTA+TGG | - | chr8.1:75165284-75165303 | MS.gene060523:intron | 45.0% | |
| ATAGAGTCTTTGTGGGCTTC+TGG | + | chr8.1:75164948-75164967 | None:intergenic | 45.0% | |
| ATAGGAGTCCTGATTATGGC+AGG | - | chr8.1:75165456-75165475 | MS.gene060523:intron | 45.0% | |
| ATGCAGATCTGTGGATGGAA+AGG | + | chr8.1:75164208-75164227 | None:intergenic | 45.0% | |
| ATGTTCAGTGAAGCTAGGCA+TGG | + | chr8.1:75164336-75164355 | None:intergenic | 45.0% | |
| CACCACCATATCTGAGTATG+GGG | + | chr8.1:75163943-75163962 | None:intergenic | 45.0% | |
| CAGTAAGATACTGGATAGGG+TGG | - | chr8.1:75165232-75165251 | MS.gene060523:intron | 45.0% | |
| CCTAGCTTCACTGAACATAG+GGG | - | chr8.1:75164338-75164357 | MS.gene060523:intron | 45.0% | |
| CGTCGCTTGTCATAACCAAA+TGG | + | chr8.1:75164749-75164768 | None:intergenic | 45.0% | |
| CTAGACATCAGTGTTGTCGA+TGG | + | chr8.1:75164004-75164023 | None:intergenic | 45.0% | |
| CTATCATACACAGGACTACG+AGG | + | chr8.1:75165392-75165411 | None:intergenic | 45.0% | |
| CTCCTATTCCTGCCATAATC+AGG | + | chr8.1:75165443-75165462 | None:intergenic | 45.0% | |
| CTCGTAGTCCTGTGTATGAT+AGG | - | chr8.1:75165390-75165409 | MS.gene060523:intron | 45.0% | |
| GACGCAGGAACTTCTACTAA+GGG | - | chr8.1:75164111-75164130 | MS.gene060523:intron | 45.0% | |
| GAGCCAACAATCTGATATGC+TGG | + | chr8.1:75163977-75163996 | None:intergenic | 45.0% | |
| GCACCACCATATCTGAGTAT+GGG | + | chr8.1:75163944-75163963 | None:intergenic | 45.0% | |
| GCCTAGCTTCACTGAACATA+GGG | - | chr8.1:75164337-75164356 | MS.gene060523:intron | 45.0% | |
| GCTATTGTAAACTAGGCCCT+AGG | - | chr8.1:75163767-75163786 | MS.gene060523:intron | 45.0% | |
| GTCCTGATTATGGCAGGAAT+AGG | - | chr8.1:75165438-75165457 | MS.gene060523:intron | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | - | chr8.1:75163869-75163888 | MS.gene060523:CDS | 45.0% | |
| TAAGTTCTTGACCTTCGCAC+TGG | + | chr8.1:75165604-75165623 | None:intergenic | 45.0% | |
| TGACGCAGGAACTTCTACTA+AGG | - | chr8.1:75164110-75164129 | MS.gene060523:intron | 45.0% | |
| TGATGCACATGAAGCTGTAG+AGG | + | chr8.1:75164514-75164533 | None:intergenic | 45.0% | |
| TGCAGATCTGTGGATGGAAA+GGG | + | chr8.1:75164207-75164226 | None:intergenic | 45.0% | |
| TGCCTAGCTTCACTGAACAT+AGG | - | chr8.1:75164336-75164355 | MS.gene060523:intron | 45.0% | |
| TGGCCAGCATATCAGATTGT+TGG | - | chr8.1:75163971-75163990 | MS.gene060523:CDS | 45.0% | |
| TGTGAAGTTCGTGTGTCAGT+TGG | - | chr8.1:75163703-75163722 | MS.gene060523:intron | 45.0% | |
| TTGTCAAATATCGGCCATGG+CGG | - | chr8.1:75163872-75163891 | MS.gene060523:CDS | 45.0% | |
| ! | TCTGAGGGATGATAGTGACA+GGG | - | chr8.1:75165271-75165290 | MS.gene060523:intron | 45.0% |
| ! | TTGGCTGATGTACTTGGTGA+GGG | - | chr8.1:75164596-75164615 | MS.gene060523:intron | 45.0% |
| ! | TTTGGCTGATGTACTTGGTG+AGG | - | chr8.1:75164595-75164614 | MS.gene060523:intron | 45.0% |
| !! | AGCTGTAGAGGTGTTGAATG+TGG | + | chr8.1:75164502-75164521 | None:intergenic | 45.0% |
| !! | CTGCCGTTTCTTTTTCCATC+GGG | + | chr8.1:75164036-75164055 | None:intergenic | 45.0% |
| !! | GGATATTGGTTGTGGGGTTT+TGG | - | chr8.1:75163893-75163912 | MS.gene060523:CDS | 45.0% |
| AACGCCCCCATACTCAGATA+TGG | - | chr8.1:75163935-75163954 | MS.gene060523:CDS | 50.0% | |
| ACATGATGAAGCGGCCCATA+AGG | + | chr8.1:75165030-75165049 | None:intergenic | 50.0% | |
| ATCTGTGGATGGAAAGGGAG+CGG | + | chr8.1:75164202-75164221 | None:intergenic | 50.0% | |
| CATACACAGGACTACGAGGA+CGG | + | chr8.1:75165388-75165407 | None:intergenic | 50.0% | |
| CCAAGTACATCAGCCAAACC+AGG | + | chr8.1:75164593-75164612 | None:intergenic | 50.0% | |
| CCCCTATGTTCAGTGAAGCT+AGG | + | chr8.1:75164341-75164360 | None:intergenic | 50.0% | |
| CTCCTGTTCCTGCCATAATC+AGG | + | chr8.1:75165467-75165486 | None:intergenic | 50.0% | |
| CTGAATATGGCAGATACCGC+AGG | - | chr8.1:75165489-75165508 | MS.gene060523:intron | 50.0% | |
| CTGATATGCTGGCCAGCATA+TGG | + | chr8.1:75163966-75163985 | None:intergenic | 50.0% | |
| CTGCGGTATCTGCCATATTC+AGG | + | chr8.1:75165491-75165510 | None:intergenic | 50.0% | |
| GAAGTTCGTGTGTCAGTTGG+CGG | - | chr8.1:75163706-75163725 | MS.gene060523:intron | 50.0% | |
| GACAGGGTCGACAATTATGG+TGG | - | chr8.1:75165287-75165306 | MS.gene060523:intron | 50.0% | |
| GGCACCACCATATCTGAGTA+TGG | + | chr8.1:75163945-75163964 | None:intergenic | 50.0% | |
| GTCCTGATTATGGCAGGAAC+AGG | - | chr8.1:75165462-75165481 | MS.gene060523:intron | 50.0% | |
| GTCTGTGGAGTATGCTCTGA+GGG | - | chr8.1:75165256-75165275 | MS.gene060523:intron | 50.0% | |
| TACTGCGAACCACCATGTTC+TGG | - | chr8.1:75163791-75163810 | MS.gene060523:intron | 50.0% | |
| TGTCTGTGGAGTATGCTCTG+AGG | - | chr8.1:75165255-75165274 | MS.gene060523:intron | 50.0% | |
| ! | CTCTGAGGGATGATAGTGAC+AGG | - | chr8.1:75165270-75165289 | MS.gene060523:intron | 50.0% |
| ! | GTCTAGTTCCTATGTCCCGA+TGG | - | chr8.1:75164018-75164037 | MS.gene060523:CDS | 50.0% |
| ! | GTCTTTGTGGGCTTCTGGTT+TGG | + | chr8.1:75164943-75164962 | None:intergenic | 50.0% |
| !! | ATAGGTATAGTGGACCGGAC+AGG | - | chr8.1:75165408-75165427 | MS.gene060523:intron | 50.0% |
| !! | ATATCGGCCATGGCGGATAT+TGG | - | chr8.1:75163879-75163898 | MS.gene060523:CDS | 50.0% |
| !! | CATGGCGGATATTGGTTGTG+GGG | - | chr8.1:75163887-75163906 | MS.gene060523:CDS | 50.0% |
| !! | CATTTTGGCAGGGTGAACGT+GGG | - | chr8.1:75164896-75164915 | MS.gene060523:intron | 50.0% |
| !! | CCATGGCGGATATTGGTTGT+GGG | - | chr8.1:75163886-75163905 | MS.gene060523:CDS | 50.0% |
| !! | CCTGGTTTGGCTGATGTACT+TGG | - | chr8.1:75164590-75164609 | MS.gene060523:intron | 50.0% |
| !! | GATATGGTGGTGCCATATGC+TGG | - | chr8.1:75163951-75163970 | MS.gene060523:CDS | 50.0% |
| !! | GCCGGTTTTCGCTGGAAATT+TGG | - | chr8.1:75163328-75163347 | MS.gene060523:CDS | 50.0% |
| !! | GGATAGGAGTGATGGACATG+AGG | - | chr8.1:75163819-75163838 | MS.gene060523:CDS | 50.0% |
| !! | GGTTTGGCTTTGAGCCATCA+CGG | + | chr8.1:75164927-75164946 | None:intergenic | 50.0% |
| !! | TCATTTTGGCAGGGTGAACG+TGG | - | chr8.1:75164895-75164914 | MS.gene060523:intron | 50.0% |
| !!! | ATGAGGCTGCTTTTGTGGCT+CGG | - | chr8.1:75163836-75163855 | MS.gene060523:CDS | 50.0% |
| !!! | TGGACATGAGGCTGCTTTTG+TGG | - | chr8.1:75163831-75163850 | MS.gene060523:CDS | 50.0% |
| ACAGTCGTTCACCAGTGCGA+AGG | - | chr8.1:75165590-75165609 | MS.gene060523:CDS | 55.0% | |
| ACTGGATAGGGTGGTGTCTG+TGG | - | chr8.1:75165241-75165260 | MS.gene060523:intron | 55.0% | |
| AGGCGACCAAGTCCAGACTA+TGG | - | chr8.1:75165362-75165381 | MS.gene060523:intron | 55.0% | |
| AGGCGGAGGAGTCCTGATTA+TGG | - | chr8.1:75165428-75165447 | MS.gene060523:intron | 55.0% | |
| ATGGTGGTTCGCAGTACCCT+AGG | + | chr8.1:75163787-75163806 | None:intergenic | 55.0% | |
| CCCACAACCAATATCCGCCA+TGG | + | chr8.1:75163889-75163908 | None:intergenic | 55.0% | |
| CTTGCTAGATCTCCCAGTCC+AGG | - | chr8.1:75165332-75165351 | MS.gene060523:intron | 55.0% | |
| GCCCCCATACTCAGATATGG+TGG | - | chr8.1:75163938-75163957 | MS.gene060523:CDS | 55.0% | |
| GGAGGAGTCCTGATTATGGC+AGG | - | chr8.1:75165432-75165451 | MS.gene060523:intron | 55.0% | |
| TATGGTGGCAGTCCCAGAAG+AGG | - | chr8.1:75165302-75165321 | MS.gene060523:intron | 55.0% | |
| TGACAAGCGACGGCTATCTG+TGG | - | chr8.1:75164757-75164776 | MS.gene060523:intron | 55.0% | |
| TGGTGGTTCGCAGTACCCTA+GGG | + | chr8.1:75163786-75163805 | None:intergenic | 55.0% | |
| !! | GCCATGGCGGATATTGGTTG+TGG | - | chr8.1:75163885-75163904 | MS.gene060523:CDS | 55.0% |
| !! | GCTATCTGTGGAGTGGGCTA+GGG | - | chr8.1:75164769-75164788 | MS.gene060523:intron | 55.0% |
| !!! | GTTTTGGCTTTCCGCCATGG+CGG | - | chr8.1:75163909-75163928 | MS.gene060523:CDS | 55.0% |
| AGCAAGACCCCCTCCTCTTC+TGG | + | chr8.1:75165318-75165337 | None:intergenic | 60.0% | |
| AGCGACGGCTATCTGTGGAG+TGG | - | chr8.1:75164762-75164781 | MS.gene060523:intron | 60.0% | |
| CGCCTGCGATAACCTGGACT+GGG | + | chr8.1:75165347-75165366 | None:intergenic | 60.0% | |
| CTACGAGGACGGCCATAGTC+TGG | + | chr8.1:75165377-75165396 | None:intergenic | 60.0% | |
| CTCCCAGTCCAGGTTATCGC+AGG | - | chr8.1:75165342-75165361 | MS.gene060523:intron | 60.0% | |
| CTTGGTCGCCTGCGATAACC+TGG | + | chr8.1:75165353-75165372 | None:intergenic | 60.0% | |
| GCAAGACCCCCTCCTCTTCT+GGG | + | chr8.1:75165317-75165336 | None:intergenic | 60.0% | |
| GCGACGGCTATCTGTGGAGT+GGG | - | chr8.1:75164763-75164782 | MS.gene060523:intron | 60.0% | |
| GGACGGCCATAGTCTGGACT+TGG | + | chr8.1:75165371-75165390 | None:intergenic | 60.0% | |
| GTGGATGGAAAGGGAGCGGA+AGG | + | chr8.1:75164198-75164217 | None:intergenic | 60.0% | |
| GTGGCAGTCCCAGAAGAGGA+GGG | - | chr8.1:75165306-75165325 | MS.gene060523:intron | 60.0% | |
| TCGCCTGCGATAACCTGGAC+TGG | + | chr8.1:75165348-75165367 | None:intergenic | 60.0% | |
| TGGCAGTCCCAGAAGAGGAG+GGG | - | chr8.1:75165307-75165326 | MS.gene060523:intron | 60.0% | |
| ! | GGCTATCTGTGGAGTGGGCT+AGG | - | chr8.1:75164768-75164787 | MS.gene060523:intron | 60.0% |
| !! | GGTATAGTGGACCGGACAGG+CGG | - | chr8.1:75165411-75165430 | MS.gene060523:intron | 60.0% |
| !!! | GGGGTTTTGGCTTTCCGCCA+TGG | - | chr8.1:75163906-75163925 | MS.gene060523:CDS | 60.0% |
| GAACGTGGGCGTCACCGTGA+TGG | - | chr8.1:75164910-75164929 | MS.gene060523:intron | 65.0% | |
| GGCAGTCCCAGAAGAGGAGG+GGG | - | chr8.1:75165308-75165327 | MS.gene060523:intron | 65.0% | |
| GGTGGCAGTCCCAGAAGAGG+AGG | - | chr8.1:75165305-75165324 | MS.gene060523:intron | 65.0% | |
| TCAGGACTCCTCCGCCTGTC+CGG | + | chr8.1:75165425-75165444 | None:intergenic | 65.0% | |
| !! | ATAGTGGACCGGACAGGCGG+AGG | - | chr8.1:75165414-75165433 | MS.gene060523:intron | 65.0% |
| !! | ATGGGGGCGTTGCACCGCCA+TGG | + | chr8.1:75163926-75163945 | None:intergenic | 70.0% |
| !! | GGGGCGTTGCACCGCCATGG+CGG | + | chr8.1:75163923-75163942 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 75163323 | 75165624 | 75163323 | ID=MS.gene060523 |
| chr8.1 | mRNA | 75163323 | 75165624 | 75163323 | ID=MS.gene060523.t1;Parent=MS.gene060523 |
| chr8.1 | exon | 75165519 | 75165624 | 75165519 | ID=MS.gene060523.t1.exon1;Parent=MS.gene060523.t1 |
| chr8.1 | CDS | 75165519 | 75165624 | 75165519 | ID=cds.MS.gene060523.t1;Parent=MS.gene060523.t1 |
| chr8.1 | exon | 75164157 | 75164269 | 75164157 | ID=MS.gene060523.t1.exon2;Parent=MS.gene060523.t1 |
| chr8.1 | CDS | 75164157 | 75164269 | 75164157 | ID=cds.MS.gene060523.t1;Parent=MS.gene060523.t1 |
| chr8.1 | exon | 75163817 | 75164040 | 75163817 | ID=MS.gene060523.t1.exon3;Parent=MS.gene060523.t1 |
| chr8.1 | CDS | 75163817 | 75164040 | 75163817 | ID=cds.MS.gene060523.t1;Parent=MS.gene060523.t1 |
| chr8.1 | exon | 75163437 | 75163712 | 75163437 | ID=MS.gene060523.t1.exon4;Parent=MS.gene060523.t1 |
| chr8.1 | CDS | 75163437 | 75163712 | 75163437 | ID=cds.MS.gene060523.t1;Parent=MS.gene060523.t1 |
| chr8.1 | exon | 75163323 | 75163353 | 75163323 | ID=MS.gene060523.t1.exon5;Parent=MS.gene060523.t1 |
| chr8.1 | CDS | 75163323 | 75163353 | 75163323 | ID=cds.MS.gene060523.t1;Parent=MS.gene060523.t1 |
| Gene Sequence |
| Protein sequence |
