AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060636

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060636.t1 MTR_2g078030 93.824 340 15 3 1 339 1 335 0.0 611
MS.gene060636.t1 MTR_2g078030 93.312 314 15 3 1 313 1 309 0.0 554
MS.gene060636.t1 MTR_8g463930 77.419 341 74 2 1 339 2 341 0.0 545
MS.gene060636.t1 MTR_4g013305 36.641 262 149 7 78 325 106 364 3.48e-51 174
MS.gene060636.t1 MTR_4g048320 35.496 262 152 7 78 325 77 335 6.16e-50 170
MS.gene060636.t1 MTR_4g035490 38.550 262 138 8 80 324 113 368 2.09e-49 170
MS.gene060636.t1 MTR_4g048320 35.496 262 152 7 78 325 135 393 2.53e-49 170
MS.gene060636.t1 MTR_3g073370 34.307 274 162 8 65 324 111 380 1.06e-47 166
MS.gene060636.t1 MTR_3g073370 34.307 274 162 8 65 324 112 381 1.17e-47 165
MS.gene060636.t1 MTR_2g088270 34.483 261 155 6 78 325 131 388 5.28e-45 159
MS.gene060636.t1 MTR_5g009700 33.043 230 143 6 80 302 27 252 6.97e-40 141
MS.gene060636.t1 MTR_5g009700 33.043 230 143 6 80 302 113 338 4.86e-39 141
MS.gene060636.t1 MTR_3g090600 32.114 246 153 6 73 313 106 342 3.35e-36 134
MS.gene060636.t1 MTR_3g090600 32.114 246 151 6 73 313 106 340 4.08e-36 134
MS.gene060636.t1 MTR_1g012800 35.622 233 134 9 76 301 115 338 3.54e-34 128
MS.gene060636.t1 MTR_3g090600 37.158 183 109 4 73 250 106 287 1.09e-27 110
MS.gene060636.t1 MTR_3g090600 37.158 183 107 4 73 250 106 285 1.43e-27 110
MS.gene060636.t1 MTR_5g041210 25.455 220 151 4 85 297 390 603 2.19e-12 68.6
MS.gene060636.t1 MTR_4g123090 24.710 259 180 6 78 329 391 641 6.04e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060636.t1 AT1G53290 70.930 344 88 3 6 339 3 344 5.90e-180 502
MS.gene060636.t1 AT3G14960 71.637 342 89 4 2 339 5 342 1.68e-179 500
MS.gene060636.t1 AT2G26100 61.755 319 119 1 24 339 50 368 8.79e-140 401
MS.gene060636.t1 AT2G26100 71.130 239 69 0 77 315 106 344 2.23e-127 369
MS.gene060636.t1 AT1G11730 35.985 264 152 7 76 325 110 370 2.36e-49 169
MS.gene060636.t1 AT1G77810 35.496 262 154 7 78 326 112 371 2.95e-49 169
MS.gene060636.t1 AT1G77810 35.496 262 154 7 78 326 115 374 3.66e-49 169
MS.gene060636.t1 AT1G32930 36.900 271 150 8 73 325 118 385 6.04e-49 169
MS.gene060636.t1 AT1G33430 36.667 270 152 8 79 334 122 386 1.06e-48 168
MS.gene060636.t1 AT1G05170 34.601 263 155 7 77 325 134 393 1.65e-48 168
MS.gene060636.t1 AT1G22015 38.129 278 146 9 65 326 115 382 3.90e-47 164
MS.gene060636.t1 AT1G33430 35.740 277 153 9 79 334 122 394 2.76e-46 162
MS.gene060636.t1 AT4G26940 35.249 261 153 6 78 325 136 393 3.67e-45 159
MS.gene060636.t1 AT2G32430 35.115 262 153 7 78 325 137 395 1.08e-44 158
MS.gene060636.t1 AT1G05170 36.036 222 135 4 77 293 134 353 1.14e-44 157
MS.gene060636.t1 AT4G32120 34.981 263 152 9 49 300 82 336 2.96e-39 142
MS.gene060636.t1 AT5G53340 32.489 237 146 6 82 313 111 338 9.77e-37 135
MS.gene060636.t1 AT5G53340 32.911 237 144 7 82 313 111 337 1.07e-36 135
MS.gene060636.t1 AT1G33430 40.884 181 101 3 80 255 123 302 3.03e-35 130
MS.gene060636.t1 AT2G25300 36.564 227 129 8 80 299 40 258 5.08e-35 129
MS.gene060636.t1 AT2G25300 36.564 227 129 8 80 299 118 336 2.61e-34 129
MS.gene060636.t1 AT4G26940 40.278 144 83 2 78 219 136 278 1.88e-24 101
MS.gene060636.t1 AT1G27120 25.728 206 141 4 81 283 425 621 6.81e-13 70.1
MS.gene060636.t1 AT1G27120 25.728 206 141 4 81 283 394 590 7.35e-13 69.7
MS.gene060636.t1 AT1G26810 25.909 220 150 4 85 297 396 609 1.27e-12 69.3
MS.gene060636.t1 AT1G26810 25.909 220 150 4 85 297 396 609 1.27e-12 69.3
MS.gene060636.t1 AT5G62620 24.638 207 144 4 80 283 431 628 3.62e-12 67.8
MS.gene060636.t1 AT3G06440 25.941 239 149 7 80 304 341 565 1.47e-11 65.9
MS.gene060636.t1 AT3G06440 25.941 239 149 7 80 304 370 594 1.62e-11 65.9

Find 78 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAAGATGTCTGCACTTAAA+AGG 0.205693 2.2:+16728289 MS.gene060636:CDS
CTAGATCCGTTCGCGTTGTT+TGG 0.244084 2.2:+16726975 MS.gene060636:CDS
CAAACAACGCGAACGGATCT+AGG 0.247402 2.2:-16726974 None:intergenic
CTGATGATGACATATATTTA+AGG 0.264025 2.2:+16728520 MS.gene060636:CDS
CCTATCGGCAACAACATTTC+TGG 0.290197 2.2:-16727026 None:intergenic
GTACATAGGATGCATGAAAA+AGG 0.293304 2.2:+16728690 MS.gene060636:CDS
TTTCCAAGCAAATTAGATAA+TGG 0.334739 2.2:-16729317 None:intergenic
CATCGACATCAATCGCTGTT+TGG 0.338964 2.2:+16730317 MS.gene060636:CDS
TACACTAACCATTTGAGTTT+CGG 0.341334 2.2:-16728730 None:intergenic
TAGATCCGTTCGCGTTGTTT+GGG 0.344788 2.2:+16726976 MS.gene060636:CDS
TATTCATCAGATTCCATTGT+TGG 0.349171 2.2:-16731671 None:intergenic
TGGGATATTCCAAAGTGTTC+AGG 0.349634 2.2:+16730337 MS.gene060636:CDS
TCATGCATCCTATGTACGTC+TGG 0.353445 2.2:-16728684 None:intergenic
ATATGACGATTTCATTCAAT+TGG 0.361639 2.2:+16728323 MS.gene060636:CDS
ATCAGCTTTGACATAAAATT+CGG 0.372389 2.2:-16728502 None:intergenic
TGGTTTCCTTCCGATCCTAA+TGG 0.377181 2.2:+16727124 MS.gene060636:CDS
ATCGACATCAATCGCTGTTT+GGG 0.381526 2.2:+16730318 MS.gene060636:CDS
TGCCGATAGGCATAAGGTTA+TGG 0.390206 2.2:+16727039 MS.gene060636:CDS
GCATTTGTCGGTATTCAGAC+TGG 0.399480 2.2:+16727061 MS.gene060636:CDS
TGTCAAGCTTGGTCGCTCTT+AGG 0.399911 2.2:+16729393 MS.gene060636:CDS
GAATGCAGCTGTCCATTTGA+TGG 0.400266 2.2:-16731643 None:intergenic
TAGTACCGTTGAAGTCCATT+AGG 0.400530 2.2:-16727139 None:intergenic
AGTTTCGGATCAGTGAAAAC+AGG 0.412422 2.2:-16728715 None:intergenic
ATTGATGTCGATGTACATTC+TGG 0.423236 2.2:-16730307 None:intergenic
AGCAATGAGGATGTTACAAT+TGG 0.423646 2.2:+16730229 MS.gene060636:CDS
TTGGAAGGCGTGAATCTTTG+AGG 0.424287 2.2:+16727095 MS.gene060636:CDS
TGCTGATGTTGTGTCAAGCT+TGG 0.426295 2.2:+16729382 MS.gene060636:CDS
TGGTCGCTCTTAGGAATAAC+AGG 0.428844 2.2:+16729402 MS.gene060636:CDS
GAGCCATTATCTAATTTGCT+TGG 0.431342 2.2:+16729314 MS.gene060636:CDS
GTTCGCGTTGTTTGGGATCA+CGG 0.448653 2.2:+16726983 MS.gene060636:CDS
CATAAGGTTATGGCATTTGT+CGG 0.466732 2.2:+16727049 MS.gene060636:CDS
TGTTGTTGCCGATAGGCATA+AGG 0.472626 2.2:+16727033 MS.gene060636:CDS
TCAGCAGAAAGAGCATATAT+AGG 0.474635 2.2:-16729365 None:intergenic
AATGTTGGAACTCCATCAAA+TGG 0.475957 2.2:+16731631 MS.gene060636:CDS
TCCAGCTTGGAAGAAGCTAC+TGG 0.476169 2.2:+16728225 MS.gene060636:intron
CGATGAGGAGTAAAAGGAGG+AGG 0.476875 2.2:-16726907 None:intergenic
AAATACAAACCTGAACACTT+TGG 0.478218 2.2:-16730346 None:intergenic
ATTTCTGGCGCCGTTGGTGA+CGG 0.479564 2.2:-16727011 None:intergenic
TCACTGATCCGAAACTCAAA+TGG 0.480790 2.2:+16728722 MS.gene060636:CDS
ATTATCTAATTTGCTTGGAA+AGG 0.483371 2.2:+16729319 MS.gene060636:CDS
GGAGGAGGAAGGTGATGAGG+AGG 0.489252 2.2:-16726892 None:intergenic
CAGACTGGGTTTAGATCTGT+TGG 0.492313 2.2:+16727076 MS.gene060636:CDS
GAAGATGTCTGCACTTAAAA+GGG 0.496040 2.2:+16728290 MS.gene060636:CDS
TGAGAATCTGCGAAGGGGAA+TGG 0.496211 2.2:-16726861 None:intergenic
GTGTGACGTGGGTTGAAGAA+TGG 0.496529 2.2:-16726839 None:intergenic
ACGTGGGTTGAAGAATGGTT+TGG 0.507473 2.2:-16726834 None:intergenic
AACAACATTTCTGGCGCCGT+TGG 0.510437 2.2:-16727017 None:intergenic
GAGGAGTAAAAGGAGGAGGA+AGG 0.516677 2.2:-16726903 None:intergenic
CATTTGTCGGTATTCAGACT+GGG 0.517713 2.2:+16727062 MS.gene060636:CDS
AAAGGAGGAGGAAGGTGATG+AGG 0.518968 2.2:-16726895 None:intergenic
AAACAACGCGAACGGATCTA+GGG 0.523178 2.2:-16726973 None:intergenic
TGGGTTGAAGAATGGTTTGG+AGG 0.524516 2.2:-16726831 None:intergenic
GTGAATCTTTGAGGAAGACT+TGG 0.526407 2.2:+16727104 MS.gene060636:CDS
CTTGGAAGAAGCTACTGGAT+TGG 0.527346 2.2:+16728230 MS.gene060636:CDS
CGAAGGGGAATGGTGTGACG+TGG 0.533817 2.2:-16726851 None:intergenic
TCTCATTCCCAGACGTACAT+AGG 0.534214 2.2:+16728676 MS.gene060636:CDS
CACGGCAACGCCGTCACCAA+CGG 0.537116 2.2:+16727001 MS.gene060636:CDS
CATGCATCCTATGTACGTCT+GGG 0.539002 2.2:-16728683 None:intergenic
AAAGTTCATGAATATTCTCA+TGG 0.542243 2.2:-16730279 None:intergenic
TGCCATAACCTTATGCCTAT+CGG 0.542296 2.2:-16727041 None:intergenic
GATGACATATATTTAAGGCC+AGG 0.545400 2.2:+16728525 MS.gene060636:CDS
CATTCAATTGGATATTGAAG+AGG 0.553721 2.2:+16728335 MS.gene060636:CDS
TAATCCAGAAAAGAGAATGT+TGG 0.561149 2.2:+16731616 MS.gene060636:CDS
AGGATGTTACAATTGGAGCT+TGG 0.574710 2.2:+16730236 MS.gene060636:CDS
AAACGATGAGGAGTAAAAGG+AGG 0.582478 2.2:-16726910 None:intergenic
TGAAGAATGAGAATCTGCGA+AGG 0.595531 2.2:-16726868 None:intergenic
CCAGAAATGTTGTTGCCGAT+AGG 0.597294 2.2:+16727026 MS.gene060636:CDS
TGAAGTCCATTAGGATCGGA+AGG 0.604237 2.2:-16727130 None:intergenic
GGTTTGGAGGAAAATGAAGA+AGG 0.606976 2.2:-16726818 None:intergenic
CTGGGTTTAGATCTGTTGGA+AGG 0.609512 2.2:+16727080 MS.gene060636:CDS
CCGTTGAAGTCCATTAGGAT+CGG 0.614621 2.2:-16727134 None:intergenic
GAAGAATGAGAATCTGCGAA+GGG 0.627764 2.2:-16726867 None:intergenic
CCGATCCTAATGGACTTCAA+CGG 0.632210 2.2:+16727134 MS.gene060636:CDS
CTGCATTCAGAGTCCAACAA+TGG 0.632354 2.2:+16731658 MS.gene060636:CDS
GTGATCCCAAACAACGCGAA+CGG 0.639513 2.2:-16726981 None:intergenic
GTTTCGGATCAGTGAAAACA+GGG 0.647891 2.2:-16728714 None:intergenic
GAAGGGGAATGGTGTGACGT+GGG 0.674684 2.2:-16726850 None:intergenic
AAGAATGAGAATCTGCGAAG+GGG 0.692002 2.2:-16726866 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTAAAAATATATATATAG+AGG + chr2.2:16730382-16730401 MS.gene060636:intron 10.0%
!!! AAAATAACATTAAATTGTTT+TGG + chr2.2:16727629-16727648 MS.gene060636:intron 10.0%
!!! AATTTATGAATCTTTAATTT+GGG + chr2.2:16728952-16728971 MS.gene060636:intron 10.0%
!!! TATATATTTTTAACATTTTG+TGG - chr2.2:16730377-16730396 None:intergenic 10.0%
!!! TTTTTTATTTGCTAATATTA+TGG - chr2.2:16730084-16730103 None:intergenic 10.0%
!! AAAAATATATATATAGAGGA+TGG + chr2.2:16730386-16730405 MS.gene060636:intron 15.0%
!! ATGTAATTTCCAATATTTAT+GGG + chr2.2:16729136-16729155 MS.gene060636:intron 15.0%
!! GAATTTATGAATCTTTAATT+TGG + chr2.2:16728951-16728970 MS.gene060636:intron 15.0%
!! TATAAAGAATTAATGAACTA+GGG - chr2.2:16729822-16729841 None:intergenic 15.0%
!! TTAGATTAAAACAAAATAGA+TGG - chr2.2:16730459-16730478 None:intergenic 15.0%
!!! ACTGTGTTTTAAAAAATAAA+AGG - chr2.2:16730197-16730216 None:intergenic 15.0%
!!! ATTTTTTAAAACACAGTTTT+CGG + chr2.2:16730200-16730219 MS.gene060636:intron 15.0%
!!! TCTATTTTGTTTTAATCTAA+CGG + chr2.2:16730459-16730478 MS.gene060636:intron 15.0%
!! AAAAAGAAACTGAGAATTAA+CGG + chr2.2:16729658-16729677 MS.gene060636:intron 20.0%
!! AAAATATGGTCATTTATTAC+AGG + chr2.2:16728442-16728461 MS.gene060636:intron 20.0%
!! AACTTCATAACTATTCTTTA+AGG - chr2.2:16729999-16730018 None:intergenic 20.0%
!! AACTTTACATTCACAATTAT+AGG - chr2.2:16730169-16730188 None:intergenic 20.0%
!! AAGTATGATATTGTATGAAT+TGG - chr2.2:16729972-16729991 None:intergenic 20.0%
!! AATAATTGAAAGAGTTACAT+AGG - chr2.2:16730734-16730753 None:intergenic 20.0%
!! AATAGGAATAAATCAATATG+AGG - chr2.2:16728202-16728221 None:intergenic 20.0%
!! CATGTAATTTCCAATATTTA+TGG + chr2.2:16729135-16729154 MS.gene060636:intron 20.0%
!! CTATAAAGAATTAATGAACT+AGG - chr2.2:16729823-16729842 None:intergenic 20.0%
!! GTAATAACAACATTAAAACT+AGG - chr2.2:16728573-16728592 None:intergenic 20.0%
!! TAACTCTTTCAATTATTTAC+TGG + chr2.2:16730737-16730756 MS.gene060636:intron 20.0%
!! TATGATAGGCATAAAATATT+TGG + chr2.2:16728819-16728838 MS.gene060636:intron 20.0%
!! TGTAATTTCCAATATTTATG+GGG + chr2.2:16729137-16729156 MS.gene060636:intron 20.0%
!!! AATCAGCATTTAATGATTTT+TGG + chr2.2:16731501-16731520 MS.gene060636:intron 20.0%
!!! ATTTAATGTACTTTTGTTAC+CGG + chr2.2:16728139-16728158 MS.gene060636:intron 20.0%
!!! GTTTTACTTATCATTTTACT+TGG + chr2.2:16728077-16728096 MS.gene060636:intron 20.0%
!!! TTGTTTTTATTGTAGTATTG+AGG + chr2.2:16727509-16727528 MS.gene060636:intron 20.0%
! AAACTATCAGAGAAACTATT+AGG + chr2.2:16727341-16727360 MS.gene060636:intron 25.0%
! AAAGAACTGGATAATTACAT+AGG - chr2.2:16730795-16730814 None:intergenic 25.0%
! AAAGTTCATGAATATTCTCA+TGG - chr2.2:16730282-16730301 None:intergenic 25.0%
! ACAATTATAGGAATATGGAA+GGG - chr2.2:16730157-16730176 None:intergenic 25.0%
! ACATGTATAAGGAAGATTTA+TGG + chr2.2:16727261-16727280 MS.gene060636:intron 25.0%
! AGAAACTATTAGGAAAGATT+TGG + chr2.2:16727351-16727370 MS.gene060636:intron 25.0%
! AGATTTGGAAATTAATGAGT+TGG + chr2.2:16727366-16727385 MS.gene060636:intron 25.0%
! AGGTGAATATTATCAATTTC+TGG - chr2.2:16731279-16731298 None:intergenic 25.0%
! ATATATGTAGCATGCAAATA+AGG - chr2.2:16729491-16729510 None:intergenic 25.0%
! ATATGACGATTTCATTCAAT+TGG + chr2.2:16728323-16728342 MS.gene060636:CDS 25.0%
! ATGTGATATTGTTTAATGAC+AGG + chr2.2:16728031-16728050 MS.gene060636:intron 25.0%
! CAAATAAGTCAATCCAAATA+GGG + chr2.2:16727784-16727803 MS.gene060636:intron 25.0%
! CATTCACAATTATAGGAATA+TGG - chr2.2:16730162-16730181 None:intergenic 25.0%
! GATTTATGGATTCTGTAATA+AGG + chr2.2:16727275-16727294 MS.gene060636:intron 25.0%
! GGAGAATTACATAAGAAAAT+CGG - chr2.2:16731400-16731419 None:intergenic 25.0%
! TCAAATAAGTCAATCCAAAT+AGG + chr2.2:16727783-16727802 MS.gene060636:intron 25.0%
! TTAAAAAAGAAGCTTAGAGT+TGG - chr2.2:16730679-16730698 None:intergenic 25.0%
! TTCTATCATACACCATATTT+CGG - chr2.2:16727393-16727412 None:intergenic 25.0%
! TTGCAAAAATCCTGATTATT+TGG - chr2.2:16728611-16728630 None:intergenic 25.0%
! TTTCCAAGCAAATTAGATAA+TGG - chr2.2:16729320-16729339 None:intergenic 25.0%
!! ATCAGCTTTGACATAAAATT+CGG - chr2.2:16728505-16728524 None:intergenic 25.0%
!! ATTTAGAACCCCATAAATAT+TGG - chr2.2:16729148-16729167 None:intergenic 25.0%
!! CTGATGATGACATATATTTA+AGG + chr2.2:16728520-16728539 MS.gene060636:CDS 25.0%
!! GTGTTTCTAAGCTAAAAATA+TGG + chr2.2:16728428-16728447 MS.gene060636:intron 25.0%
!! TAAATGCAAATCGTTTTCAA+TGG + chr2.2:16728055-16728074 MS.gene060636:intron 25.0%
!! TTTCAACTTAACATTTGTTG+AGG + chr2.2:16731352-16731371 MS.gene060636:intron 25.0%
!!! AAATACAACGCTGAATTTTT+TGG - chr2.2:16730613-16730632 None:intergenic 25.0%
!!! AACTTCTTATTTTGCTATCT+TGG + chr2.2:16730857-16730876 MS.gene060636:intron 25.0%
!!! AATGTCGATGTTTTGATTTT+AGG + chr2.2:16727472-16727491 MS.gene060636:intron 25.0%
!!! ATTATCTAATTTGCTTGGAA+AGG + chr2.2:16729319-16729338 MS.gene060636:CDS 25.0%
!!! CTTTTTTCTGAATGATGATT+TGG + chr2.2:16731569-16731588 MS.gene060636:intron 25.0%
!!! GTATTTTGAGATAAAAGCAA+CGG + chr2.2:16731000-16731019 MS.gene060636:intron 25.0%
!!! TACTAATCTCTTTTTTGTTG+AGG + chr2.2:16727157-16727176 MS.gene060636:intron 25.0%
!!! TTTCTCTGATAGTTTTTTCT+TGG - chr2.2:16727336-16727355 None:intergenic 25.0%
AAAATCCAAAAGTGAGATAG+TGG - chr2.2:16729520-16729539 None:intergenic 30.0%
AAACGTCTCAACATAAACTA+GGG + chr2.2:16729105-16729124 MS.gene060636:intron 30.0%
AAAGAGTTACATAGGCAAAT+CGG - chr2.2:16730726-16730745 None:intergenic 30.0%
AAATACAAACCTGAACACTT+TGG - chr2.2:16730349-16730368 None:intergenic 30.0%
AAGATTGGATTCATTAAGGT+AGG + chr2.2:16731069-16731088 MS.gene060636:intron 30.0%
AATCAAAACCGACTAACATA+AGG - chr2.2:16727933-16727952 None:intergenic 30.0%
ACTATATAAACCAAAGCAGA+TGG - chr2.2:16729625-16729644 None:intergenic 30.0%
AGAAAACGAAAGAAACAAGA+TGG - chr2.2:16729062-16729081 None:intergenic 30.0%
ATAAATCAAGAAACCTTGTG+TGG - chr2.2:16730961-16730980 None:intergenic 30.0%
ATAAGGAGAGATAGATCAAA+TGG + chr2.2:16727292-16727311 MS.gene060636:intron 30.0%
ATCTTTGTCAGAATTGTGTT+TGG + chr2.2:16729583-16729602 MS.gene060636:intron 30.0%
ATCTTTGTTCCTTTGTGAAA+AGG - chr2.2:16730055-16730074 None:intergenic 30.0%
ATGCCTATCATAAAGTGAAA+TGG - chr2.2:16728811-16728830 None:intergenic 30.0%
ATTCTCCAATTCTATTGCAT+TGG + chr2.2:16731413-16731432 MS.gene060636:intron 30.0%
CAAGTTGTAGACAAAGAAAA+GGG - chr2.2:16729430-16729449 None:intergenic 30.0%
CACAATTATAGGAATATGGA+AGG - chr2.2:16730158-16730177 None:intergenic 30.0%
CATTCAATTGGATATTGAAG+AGG + chr2.2:16728335-16728354 MS.gene060636:CDS 30.0%
CTTGAAGATTGGATTCATTA+AGG + chr2.2:16731065-16731084 MS.gene060636:intron 30.0%
GAAAACGAAAGAAACAAGAT+GGG - chr2.2:16729061-16729080 None:intergenic 30.0%
GTGTTGTGTATTACAAGAAT+TGG + chr2.2:16727815-16727834 MS.gene060636:intron 30.0%
TAAATCTCCAAGCAATTGAA+TGG - chr2.2:16729914-16729933 None:intergenic 30.0%
TAAGTCTATAGACTTACTCT+TGG - chr2.2:16730423-16730442 None:intergenic 30.0%
TAATCCAGAAAAGAGAATGT+TGG + chr2.2:16731616-16731635 MS.gene060636:CDS 30.0%
TACATAGGATGCATGAAAAA+GGG + chr2.2:16728691-16728710 MS.gene060636:CDS 30.0%
TACTTTGCATAGGTAATGAA+TGG - chr2.2:16727873-16727892 None:intergenic 30.0%
TAGATCGTAAAAAACTGCTT+TGG - chr2.2:16730580-16730599 None:intergenic 30.0%
TAGGAAAACAAAAACATACG+TGG + chr2.2:16731088-16731107 MS.gene060636:intron 30.0%
TATGGTCATTTATTACAGGT+TGG + chr2.2:16728446-16728465 MS.gene060636:intron 30.0%
TATTCATCAGATTCCATTGT+TGG - chr2.2:16731674-16731693 None:intergenic 30.0%
TGAATAACATAAGAGAGAGA+TGG - chr2.2:16731457-16731476 None:intergenic 30.0%
TGCCTATCATAAAGTGAAAT+GGG - chr2.2:16728810-16728829 None:intergenic 30.0%
TGGTGTATGATAGAACATTA+TGG + chr2.2:16727398-16727417 MS.gene060636:intron 30.0%
TGTAATACACAACACAACTT+AGG - chr2.2:16727810-16727829 None:intergenic 30.0%
! AATGATTTTCATTCCCTTTG+AGG - chr2.2:16729020-16729039 None:intergenic 30.0%
! ATTTTCTTTTTGACGAATCG+CGG - chr2.2:16731242-16731261 None:intergenic 30.0%
! GAGTATTTTCTTCATGCTTA+TGG + chr2.2:16729341-16729360 MS.gene060636:CDS 30.0%
! GTTTTTGAATTTCTACCTTG+AGG + chr2.2:16730917-16730936 MS.gene060636:intron 30.0%
! TACACTAACCATTTGAGTTT+CGG - chr2.2:16728733-16728752 None:intergenic 30.0%
! TCATTTTACAACCAGCATAT+TGG + chr2.2:16729245-16729264 MS.gene060636:intron 30.0%
! TTGATTTGAAGTCTCATGTT+TGG + chr2.2:16727533-16727552 MS.gene060636:intron 30.0%
! TTTCTGAATGATGATTTGGA+TGG + chr2.2:16731573-16731592 MS.gene060636:intron 30.0%
! TTTTTCCACTATCTCACTTT+TGG + chr2.2:16729512-16729531 MS.gene060636:intron 30.0%
!!! AGTCGGTTTTGATTGATTTT+GGG + chr2.2:16727939-16727958 MS.gene060636:intron 30.0%
!!! ATTGTTATCTGCCTCTTTTT+TGG + chr2.2:16729166-16729185 MS.gene060636:intron 30.0%
!!! GGCTTTTGGAGTAATTTTAT+CGG + chr2.2:16729275-16729294 MS.gene060636:intron 30.0%
!!! TAGTCGGTTTTGATTGATTT+TGG + chr2.2:16727938-16727957 MS.gene060636:intron 30.0%
!!! TTGGCTTTTAGGTTTGTTAT+TGG + chr2.2:16728249-16728268 MS.gene060636:CDS 30.0%
!!! TTGTTATCTGCCTCTTTTTT+GGG + chr2.2:16729167-16729186 MS.gene060636:intron 30.0%
!!! TTGTTTTTGCCTTTTCACAA+AGG + chr2.2:16730043-16730062 MS.gene060636:intron 30.0%
AAAAAGAAGCTTAGAGTTGG+AGG - chr2.2:16730676-16730695 None:intergenic 35.0%
AAAGAAATATGCTCAGTGCA+TGG - chr2.2:16729941-16729960 None:intergenic 35.0%
AAATGAGCCATTCAATTGCT+TGG + chr2.2:16729904-16729923 MS.gene060636:intron 35.0%
AACGTCTCAACATAAACTAG+GGG + chr2.2:16729106-16729125 MS.gene060636:intron 35.0%
AATGTTGGAACTCCATCAAA+TGG + chr2.2:16731631-16731650 MS.gene060636:CDS 35.0%
ACACAATTCTGACAAAGATG+TGG - chr2.2:16729582-16729601 None:intergenic 35.0%
ACGGTTTAAGAAAAACGATG+AGG - chr2.2:16726925-16726944 None:intergenic 35.0%
AGATAGATCAAATGGAGGAT+AGG + chr2.2:16727300-16727319 MS.gene060636:intron 35.0%
AGCAATGAGGATGTTACAAT+TGG + chr2.2:16730229-16730248 MS.gene060636:CDS 35.0%
ATCAATGCGAAAACAAGCTT+AGG + chr2.2:16727230-16727249 MS.gene060636:intron 35.0%
ATCTTTAATTGTGTCCTTCC+TGG + chr2.2:16728756-16728775 MS.gene060636:intron 35.0%
ATTATAGGAATATGGAAGGG+AGG - chr2.2:16730154-16730173 None:intergenic 35.0%
ATTGATGTCGATGTACATTC+TGG - chr2.2:16730310-16730329 None:intergenic 35.0%
CAAACGTCTCAACATAAACT+AGG + chr2.2:16729104-16729123 MS.gene060636:intron 35.0%
CACCCATTTCACTTTATGAT+AGG + chr2.2:16728805-16728824 MS.gene060636:intron 35.0%
CATAAGGTTATGGCATTTGT+CGG + chr2.2:16727049-16727068 MS.gene060636:CDS 35.0%
CCAAAAACAAGACCACAAAA+GGG - chr2.2:16727847-16727866 None:intergenic 35.0%
CTAGTTTATGTTGAGACGTT+TGG - chr2.2:16729106-16729125 None:intergenic 35.0%
CTTGAAAGAGCCAAATAATC+AGG + chr2.2:16728598-16728617 MS.gene060636:intron 35.0%
CTTGATTTATGTGTGACAGA+GGG + chr2.2:16730971-16730990 MS.gene060636:intron 35.0%
GAAAAACGATGAGGAGTAAA+AGG - chr2.2:16726916-16726935 None:intergenic 35.0%
GAAAACAAGCTTAGGTGATT+TGG + chr2.2:16727238-16727257 MS.gene060636:intron 35.0%
GAACTGGATAATTACATAGG+CGG - chr2.2:16730792-16730811 None:intergenic 35.0%
GAAGATGTCTGCACTTAAAA+GGG + chr2.2:16728290-16728309 MS.gene060636:CDS 35.0%
GCAAGTTGTAGACAAAGAAA+AGG - chr2.2:16729431-16729450 None:intergenic 35.0%
GCATTATGCCTTATGTTAGT+CGG + chr2.2:16727922-16727941 MS.gene060636:intron 35.0%
GGGTGAAAATTGAAAAGTTC+CGG - chr2.2:16728790-16728809 None:intergenic 35.0%
GTACATAGGATGCATGAAAA+AGG + chr2.2:16728690-16728709 MS.gene060636:CDS 35.0%
TAGATTACAACTACTGTCTG+TGG + chr2.2:16728929-16728948 MS.gene060636:intron 35.0%
TCAATTGCTTGGAGATTTAG+TGG + chr2.2:16729915-16729934 MS.gene060636:intron 35.0%
TCCAAAAACAAGACCACAAA+AGG - chr2.2:16727848-16727867 None:intergenic 35.0%
TCTTGATTTATGTGTGACAG+AGG + chr2.2:16730970-16730989 MS.gene060636:intron 35.0%
TTATAGGAATATGGAAGGGA+GGG - chr2.2:16730153-16730172 None:intergenic 35.0%
TTGATTTATGTGTGACAGAG+GGG + chr2.2:16730972-16730991 MS.gene060636:intron 35.0%
TTGTCAGAATTGTGTTTGGT+TGG + chr2.2:16729587-16729606 MS.gene060636:intron 35.0%
! AAGAGGTGTGGAATATTGTT+TGG - chr2.2:16730510-16730529 None:intergenic 35.0%
! AGGTGATTTGGACATGTATA+AGG + chr2.2:16727250-16727269 MS.gene060636:intron 35.0%
! AGTTCCAACATTCTCTTTTC+TGG - chr2.2:16731623-16731642 None:intergenic 35.0%
! GATGACATATATTTAAGGCC+AGG + chr2.2:16728525-16728544 MS.gene060636:CDS 35.0%
! TAATGAGTTGGACCGAAATA+TGG + chr2.2:16727378-16727397 MS.gene060636:intron 35.0%
! TCAGAACACACGTTTTGTAT+GGG - chr2.2:16728374-16728393 None:intergenic 35.0%
! TCAGCAGAAAGAGCATATAT+AGG - chr2.2:16729368-16729387 None:intergenic 35.0%
! TTTTCATTGTCGCTATAGAG+AGG - chr2.2:16729214-16729233 None:intergenic 35.0%
! TTTTGTTACCGGTGCAATTT+GGG + chr2.2:16728150-16728169 MS.gene060636:intron 35.0%
!! GAGCCATTATCTAATTTGCT+TGG + chr2.2:16729314-16729333 MS.gene060636:CDS 35.0%
!!! AGACAGCGATTGTTTTGAAA+CGG - chr2.2:16726944-16726963 None:intergenic 35.0%
!!! ATATTGGCTTCTTTGGCTTT+TGG + chr2.2:16729261-16729280 MS.gene060636:intron 35.0%
!!! TGTTATCTGCCTCTTTTTTG+GGG + chr2.2:16729168-16729187 MS.gene060636:intron 35.0%
AAACGATGAGGAGTAAAAGG+AGG - chr2.2:16726913-16726932 None:intergenic 40.0%
AAAGTTCCGGAAATTAAGCC+AGG - chr2.2:16728777-16728796 None:intergenic 40.0%
AACACAACTTAGGCCCTATT+TGG - chr2.2:16727800-16727819 None:intergenic 40.0%
AAGAATGAGAATCTGCGAAG+GGG - chr2.2:16726869-16726888 None:intergenic 40.0%
AATCAAGAAACCTTGTGTGG+TGG - chr2.2:16730958-16730977 None:intergenic 40.0%
AATCAATGGTTGAAGAGGTG+TGG - chr2.2:16730522-16730541 None:intergenic 40.0%
ACTACATGACCCCAAAAAAG+AGG - chr2.2:16729180-16729199 None:intergenic 40.0%
ACTCGGTAATGCTTGAAGAT+TGG + chr2.2:16731054-16731073 MS.gene060636:intron 40.0%
AGAAGTTCAAAGCTGAGAGA+TGG - chr2.2:16730844-16730863 None:intergenic 40.0%
AGGAGAGATAGATCAAATGG+AGG + chr2.2:16727295-16727314 MS.gene060636:intron 40.0%
AGGATGTTACAATTGGAGCT+TGG + chr2.2:16730236-16730255 MS.gene060636:CDS 40.0%
AGGGAAGATTGAAATCCTCA+AGG - chr2.2:16730935-16730954 None:intergenic 40.0%
AGTTTCGGATCAGTGAAAAC+AGG - chr2.2:16728718-16728737 None:intergenic 40.0%
ATCAATGTATTGCAGTCCTG+AGG + chr2.2:16729742-16729761 MS.gene060636:intron 40.0%
ATCCGTCTGAATCTAGCTAT+TGG + chr2.2:16728101-16728120 MS.gene060636:intron 40.0%
ATCGACATCAATCGCTGTTT+GGG + chr2.2:16730318-16730337 MS.gene060636:CDS 40.0%
CAAAATTGACCATGAACCTC+AGG - chr2.2:16729761-16729780 None:intergenic 40.0%
CATTTGTCGGTATTCAGACT+GGG + chr2.2:16727062-16727081 MS.gene060636:CDS 40.0%
CGAAGATGTCTGCACTTAAA+AGG + chr2.2:16728289-16728308 MS.gene060636:CDS 40.0%
CGGTTTAAATGATGCCAAGA+AGG - chr2.2:16730767-16730786 None:intergenic 40.0%
GAACAATTGAAAGACGCTGA+AGG - chr2.2:16730548-16730567 None:intergenic 40.0%
GAAGAATGAGAATCTGCGAA+GGG - chr2.2:16726870-16726889 None:intergenic 40.0%
GCTGTCCAATGCAATAGAAT+TGG - chr2.2:16731421-16731440 None:intergenic 40.0%
GGAACAATCAATGGTTGAAG+AGG - chr2.2:16730527-16730546 None:intergenic 40.0%
GGATAATTACATAGGCGGAT+CGG - chr2.2:16730787-16730806 None:intergenic 40.0%
GGTTTGGAGGAAAATGAAGA+AGG - chr2.2:16726821-16726840 None:intergenic 40.0%
GTCCAATAGCTAGATTCAGA+CGG - chr2.2:16728106-16728125 None:intergenic 40.0%
GTTGAAAACTGTATCGCTGT+TGG - chr2.2:16731339-16731358 None:intergenic 40.0%
GTTGTACACTATGAAACCCA+AGG - chr2.2:16729704-16729723 None:intergenic 40.0%
GTTTATGTTGAGACGTTTGG+AGG - chr2.2:16729103-16729122 None:intergenic 40.0%
GTTTCGGATCAGTGAAAACA+GGG - chr2.2:16728717-16728736 None:intergenic 40.0%
TAAACTGTAGCAGCCTCAAA+GGG + chr2.2:16729004-16729023 MS.gene060636:intron 40.0%
TAGTACCGTTGAAGTCCATT+AGG - chr2.2:16727142-16727161 None:intergenic 40.0%
TATAGGAATATGGAAGGGAG+GGG - chr2.2:16730152-16730171 None:intergenic 40.0%
TATTCCTATTGCTTCCAGCT+TGG + chr2.2:16728212-16728231 MS.gene060636:intron 40.0%
TATTTACTGGTGCACCTTCT+TGG + chr2.2:16730750-16730769 MS.gene060636:intron 40.0%
TATTTCAATTGCCTCTTCCC+TGG + chr2.2:16730628-16730647 MS.gene060636:intron 40.0%
TCACTGATCCGAAACTCAAA+TGG + chr2.2:16728722-16728741 MS.gene060636:CDS 40.0%
TGAAGAATGAGAATCTGCGA+AGG - chr2.2:16726871-16726890 None:intergenic 40.0%
TGACAAAGATGTGGAACAGA+CGG - chr2.2:16729573-16729592 None:intergenic 40.0%
TGCCATAACCTTATGCCTAT+CGG - chr2.2:16727044-16727063 None:intergenic 40.0%
TTAAACTGTAGCAGCCTCAA+AGG + chr2.2:16729003-16729022 MS.gene060636:intron 40.0%
TTGAGACGTTTGGAGGAAAA+GGG - chr2.2:16729096-16729115 None:intergenic 40.0%
TTTGGATGGTGTTTACCTAC+AGG + chr2.2:16731587-16731606 MS.gene060636:intron 40.0%
TTTGTTACCGGTGCAATTTG+GGG + chr2.2:16728151-16728170 MS.gene060636:intron 40.0%
! AAAACCTTTTCCCCACTAAG+TGG - chr2.2:16727449-16727468 None:intergenic 40.0%
! AAACCTTTTCCCCACTAAGT+GGG - chr2.2:16727448-16727467 None:intergenic 40.0%
! AACTGTATCGCTGTTGGTTA+AGG - chr2.2:16731333-16731352 None:intergenic 40.0%
! AATTGGAAGCTTCCCTTTTG+TGG + chr2.2:16727832-16727851 MS.gene060636:intron 40.0%
! ACTGTATCGCTGTTGGTTAA+GGG - chr2.2:16731332-16731351 None:intergenic 40.0%
! ATTTTATCGGCAACTCTTGC+AGG + chr2.2:16729288-16729307 MS.gene060636:intron 40.0%
! CTCAGAACACACGTTTTGTA+TGG - chr2.2:16728375-16728394 None:intergenic 40.0%
! CTTTTGTTACCGGTGCAATT+TGG + chr2.2:16728149-16728168 MS.gene060636:intron 40.0%
! GTGAATCTTTGAGGAAGACT+TGG + chr2.2:16727104-16727123 MS.gene060636:CDS 40.0%
! TGGGATATTCCAAAGTGTTC+AGG + chr2.2:16730337-16730356 MS.gene060636:CDS 40.0%
! TTTTCGGATGTTCAGCAATG+AGG + chr2.2:16730216-16730235 MS.gene060636:CDS 40.0%
!! AACCAGCATATTGGCTTCTT+TGG + chr2.2:16729254-16729273 MS.gene060636:intron 40.0%
!!! AAGCTACTGGATTGGCTTTT+AGG + chr2.2:16728238-16728257 MS.gene060636:CDS 40.0%
!!! CCCTTTTGTGGTCTTGTTTT+TGG + chr2.2:16727844-16727863 MS.gene060636:intron 40.0%
!!! CGCTGAATTTTTTGGTCTGA+AGG - chr2.2:16730605-16730624 None:intergenic 40.0%
AAACAACGCGAACGGATCTA+GGG - chr2.2:16726976-16726995 None:intergenic 45.0%
AAGAAGCTTAGAGTTGGAGG+TGG - chr2.2:16730673-16730692 None:intergenic 45.0%
ACCCTGAAAGAAATTGCACC+TGG - chr2.2:16728546-16728565 None:intergenic 45.0%
ACCGAAGAATGAACTCGACT+CGG + chr2.2:16731037-16731056 MS.gene060636:intron 45.0%
ACCGAGTCGAGTTCATTCTT+CGG - chr2.2:16731041-16731060 None:intergenic 45.0%
ACGGAGATGTTCATGTCATG+TGG + chr2.2:16729677-16729696 MS.gene060636:intron 45.0%
AGCCAAAGAAGCCAATATGC+TGG - chr2.2:16729259-16729278 None:intergenic 45.0%
ATCAAATGGAGGATAGGCAG+AGG + chr2.2:16727306-16727325 MS.gene060636:intron 45.0%
CAGAATTGTGTTTGGTTGGC+TGG + chr2.2:16729591-16729610 MS.gene060636:intron 45.0%
CAGACTGGGTTTAGATCTGT+TGG + chr2.2:16727076-16727095 MS.gene060636:CDS 45.0%
CATCGACATCAATCGCTGTT+TGG + chr2.2:16730317-16730336 MS.gene060636:CDS 45.0%
CATGCATCCTATGTACGTCT+GGG - chr2.2:16728686-16728705 None:intergenic 45.0%
CCAGAAATGTTGTTGCCGAT+AGG + chr2.2:16727026-16727045 MS.gene060636:CDS 45.0%
CCGTTGAAGTCCATTAGGAT+CGG - chr2.2:16727137-16727156 None:intergenic 45.0%
CCTATCGGCAACAACATTTC+TGG - chr2.2:16727029-16727048 None:intergenic 45.0%
CTGCATTCAGAGTCCAACAA+TGG + chr2.2:16731658-16731677 MS.gene060636:CDS 45.0%
CTGGGTTTAGATCTGTTGGA+AGG + chr2.2:16727080-16727099 MS.gene060636:CDS 45.0%
CTTGGAAGAAGCTACTGGAT+TGG + chr2.2:16728230-16728249 MS.gene060636:CDS 45.0%
GAATGCAGCTGTCCATTTGA+TGG - chr2.2:16731646-16731665 None:intergenic 45.0%
GACGCTGAAGGAACAATCAA+TGG - chr2.2:16730536-16730555 None:intergenic 45.0%
GCATTTGTCGGTATTCAGAC+TGG + chr2.2:16727061-16727080 MS.gene060636:CDS 45.0%
GCCAGGTGCAATTTCTTTCA+GGG + chr2.2:16728542-16728561 MS.gene060636:intron 45.0%
GTCCTTCCTGGCTTAATTTC+CGG + chr2.2:16728768-16728787 MS.gene060636:intron 45.0%
GTGGTTGGGTATAGACGAAT+AGG - chr2.2:16731299-16731318 None:intergenic 45.0%
GTTCATGTCATGTGGTCCTT+GGG + chr2.2:16729685-16729704 MS.gene060636:intron 45.0%
GTTGAGACGTTTGGAGGAAA+AGG - chr2.2:16729097-16729116 None:intergenic 45.0%
TAGATCCGTTCGCGTTGTTT+GGG + chr2.2:16726976-16726995 MS.gene060636:CDS 45.0%
TATTGCAGTCCTGAGGTTCA+TGG + chr2.2:16729749-16729768 MS.gene060636:intron 45.0%
TCATGCATCCTATGTACGTC+TGG - chr2.2:16728687-16728706 None:intergenic 45.0%
TCTCATTCCCAGACGTACAT+AGG + chr2.2:16728676-16728695 MS.gene060636:CDS 45.0%
TCTGGATTACAGAGACCTGT+AGG - chr2.2:16731605-16731624 None:intergenic 45.0%
TCTTCCAAGCTGGAAGCAAT+AGG - chr2.2:16728219-16728238 None:intergenic 45.0%
TGAAGTCCATTAGGATCGGA+AGG - chr2.2:16727133-16727152 None:intergenic 45.0%
TGAGACGTTTGGAGGAAAAG+GGG - chr2.2:16729095-16729114 None:intergenic 45.0%
TGCCGATAGGCATAAGGTTA+TGG + chr2.2:16727039-16727058 MS.gene060636:CDS 45.0%
TGCTGATGTTGTGTCAAGCT+TGG + chr2.2:16729382-16729401 MS.gene060636:CDS 45.0%
TGGTCAGACATATGCACATG+TGG + chr2.2:16731521-16731540 MS.gene060636:intron 45.0%
TGGTCGCTCTTAGGAATAAC+AGG + chr2.2:16729402-16729421 MS.gene060636:CDS 45.0%
TGGTTTCCTTCCGATCCTAA+TGG + chr2.2:16727124-16727143 MS.gene060636:CDS 45.0%
TGTTCATGTCATGTGGTCCT+TGG + chr2.2:16729684-16729703 MS.gene060636:intron 45.0%
TGTTGTTGCCGATAGGCATA+AGG + chr2.2:16727033-16727052 MS.gene060636:CDS 45.0%
TTCCGGAAATTAAGCCAGGA+AGG - chr2.2:16728773-16728792 None:intergenic 45.0%
TTTCAGACCCCAAATTGCAC+CGG - chr2.2:16728161-16728180 None:intergenic 45.0%
! AACTTGCTCACTGCTCGATA+TGG - chr2.2:16729859-16729878 None:intergenic 45.0%
! AAGAAACCTTGTGTGGTGGA+GGG - chr2.2:16730954-16730973 None:intergenic 45.0%
! ACGTGGGTTGAAGAATGGTT+TGG - chr2.2:16726837-16726856 None:intergenic 45.0%
! CACTGCTAGCTACTTTGCAT+AGG - chr2.2:16727883-16727902 None:intergenic 45.0%
! CATTTGTTGAGGCACCTTCT+TGG + chr2.2:16731363-16731382 MS.gene060636:intron 45.0%
! TGGGTTGAAGAATGGTTTGG+AGG - chr2.2:16726834-16726853 None:intergenic 45.0%
! TTGGAAGGCGTGAATCTTTG+AGG + chr2.2:16727095-16727114 MS.gene060636:CDS 45.0%
!! CCGATCCTAATGGACTTCAA+CGG + chr2.2:16727134-16727153 MS.gene060636:CDS 45.0%
AAAGGAGGAGGAAGGTGATG+AGG - chr2.2:16726898-16726917 None:intergenic 50.0%
AAGCTTAGAGTTGGAGGTGG+TGG - chr2.2:16730670-16730689 None:intergenic 50.0%
AAGGGTTCGTGTGATGTGGT+TGG - chr2.2:16731314-16731333 None:intergenic 50.0%
AAGTGCATTTCAGGGGGTTC+TGG - chr2.2:16731122-16731141 None:intergenic 50.0%
AATCTTCCCTCCACCACACA+AGG + chr2.2:16730945-16730964 MS.gene060636:intron 50.0%
ACCCCCTGAAATGCACTTCA+AGG + chr2.2:16731124-16731143 MS.gene060636:intron 50.0%
AGCTTAGAGTTGGAGGTGGT+GGG - chr2.2:16730669-16730688 None:intergenic 50.0%
AGGGTTCGTGTGATGTGGTT+GGG - chr2.2:16731313-16731332 None:intergenic 50.0%
CAAACAACGCGAACGGATCT+AGG - chr2.2:16726977-16726996 None:intergenic 50.0%
CAAGAAACCTTGTGTGGTGG+AGG - chr2.2:16730955-16730974 None:intergenic 50.0%
CCCCCTGAAATGCACTTCAA+GGG + chr2.2:16731125-16731144 MS.gene060636:intron 50.0%
CCCCCTTGAAGTGCATTTCA+GGG - chr2.2:16731130-16731149 None:intergenic 50.0%
CCCCTGAAATGCACTTCAAG+GGG + chr2.2:16731126-16731145 MS.gene060636:intron 50.0%
CCCCTTGAAGTGCATTTCAG+GGG - chr2.2:16731129-16731148 None:intergenic 50.0%
CCCTGAAATGCACTTCAAGG+GGG + chr2.2:16731127-16731146 MS.gene060636:intron 50.0%
CCCTTGAAGTGCATTTCAGG+GGG - chr2.2:16731128-16731147 None:intergenic 50.0%
CGATGAGGAGTAAAAGGAGG+AGG - chr2.2:16726910-16726929 None:intergenic 50.0%
CGGTTTGAGAGATGCCAAGA+AGG - chr2.2:16731380-16731399 None:intergenic 50.0%
CTAGATCCGTTCGCGTTGTT+TGG + chr2.2:16726975-16726994 MS.gene060636:CDS 50.0%
GAGGAGTAAAAGGAGGAGGA+AGG - chr2.2:16726906-16726925 None:intergenic 50.0%
GGCCAGGTGCAATTTCTTTC+AGG + chr2.2:16728541-16728560 MS.gene060636:intron 50.0%
GGTCTGTAGACCATCTGCTT+TGG + chr2.2:16729612-16729631 MS.gene060636:intron 50.0%
GGTTAAGGGTTCGTGTGATG+TGG - chr2.2:16731318-16731337 None:intergenic 50.0%
GTGATCCCAAACAACGCGAA+CGG - chr2.2:16726984-16727003 None:intergenic 50.0%
TCCAGCTTGGAAGAAGCTAC+TGG + chr2.2:16728225-16728244 MS.gene060636:intron 50.0%
TCCAGTAGCTTCTTCCAAGC+TGG - chr2.2:16728229-16728248 None:intergenic 50.0%
TGAGAATCTGCGAAGGGGAA+TGG - chr2.2:16726864-16726883 None:intergenic 50.0%
TGTCAAGCTTGGTCGCTCTT+AGG + chr2.2:16729393-16729412 MS.gene060636:CDS 50.0%
! GTGTGACGTGGGTTGAAGAA+TGG - chr2.2:16726842-16726861 None:intergenic 50.0%
! GTTCGCGTTGTTTGGGATCA+CGG + chr2.2:16726983-16727002 MS.gene060636:CDS 50.0%
!! AACAACATTTCTGGCGCCGT+TGG - chr2.2:16727020-16727039 None:intergenic 50.0%
!! TTTTCCCCACTAAGTGGGCT+CGG - chr2.2:16727443-16727462 None:intergenic 50.0%
ATGTAGCCGAGCCCACTTAG+TGG + chr2.2:16727434-16727453 MS.gene060636:intron 55.0%
GAAGGGGAATGGTGTGACGT+GGG - chr2.2:16726853-16726872 None:intergenic 55.0%
GAGCCCACTTAGTGGGGAAA+AGG + chr2.2:16727442-16727461 MS.gene060636:intron 55.0%
GCCCCCTTGAAGTGCATTTC+AGG - chr2.2:16731131-16731150 None:intergenic 55.0%
GCTTAGAGTTGGAGGTGGTG+GGG - chr2.2:16730668-16730687 None:intergenic 55.0%
TGTAGCCGAGCCCACTTAGT+GGG + chr2.2:16727435-16727454 MS.gene060636:intron 55.0%
! ACTAAGTGGGCTCGGCTACA+TGG - chr2.2:16727435-16727454 None:intergenic 55.0%
!! ATTTCTGGCGCCGTTGGTGA+CGG - chr2.2:16727014-16727033 None:intergenic 55.0%
CGAAGGGGAATGGTGTGACG+TGG - chr2.2:16726854-16726873 None:intergenic 60.0%
GGAAGGGAGGGGACTGAACA+AGG - chr2.2:16730141-16730160 None:intergenic 60.0%
GGAGGAGGAAGGTGATGAGG+AGG - chr2.2:16726895-16726914 None:intergenic 60.0%
GTAGCCGAGCCCACTTAGTG+GGG + chr2.2:16727436-16727455 MS.gene060636:intron 60.0%
!! AGTTGGAGGTGGTGGGGACA+AGG - chr2.2:16730662-16730681 None:intergenic 60.0%
!! GTTGGAGGTGGTGGGGACAA+GGG - chr2.2:16730661-16730680 None:intergenic 60.0%
AGGGAGGGTAGCCAGGGAAG+AGG - chr2.2:16730642-16730661 None:intergenic 65.0%
CACGGCAACGCCGTCACCAA+CGG + chr2.2:16727001-16727020 MS.gene060636:CDS 65.0%
GGGACAAGGGAGGGTAGCCA+GGG - chr2.2:16730648-16730667 None:intergenic 65.0%
!! GAGGTGGTGGGGACAAGGGA+GGG - chr2.2:16730657-16730676 None:intergenic 65.0%
GGGGACAAGGGAGGGTAGCC+AGG - chr2.2:16730649-16730668 None:intergenic 70.0%
!! GGAGGTGGTGGGGACAAGGG+AGG - chr2.2:16730658-16730677 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 16726815 16731694 16726815 ID=MS.gene060636
chr2.2 mRNA 16726815 16731694 16726815 ID=MS.gene060636.t1;Parent=MS.gene060636
chr2.2 exon 16726815 16727155 16726815 ID=MS.gene060636.t1.exon1;Parent=MS.gene060636.t1
chr2.2 CDS 16726815 16727155 16726815 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
chr2.2 exon 16728230 16728382 16728230 ID=MS.gene060636.t1.exon2;Parent=MS.gene060636.t1
chr2.2 CDS 16728230 16728382 16728230 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
chr2.2 exon 16728464 16728546 16728464 ID=MS.gene060636.t1.exon3;Parent=MS.gene060636.t1
chr2.2 CDS 16728464 16728546 16728464 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
chr2.2 exon 16728644 16728743 16728644 ID=MS.gene060636.t1.exon4;Parent=MS.gene060636.t1
chr2.2 CDS 16728644 16728743 16728644 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
chr2.2 exon 16729310 16729423 16729310 ID=MS.gene060636.t1.exon5;Parent=MS.gene060636.t1
chr2.2 CDS 16729310 16729423 16729310 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
chr2.2 exon 16730216 16730358 16730216 ID=MS.gene060636.t1.exon6;Parent=MS.gene060636.t1
chr2.2 CDS 16730216 16730358 16730216 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
chr2.2 exon 16731609 16731694 16731609 ID=MS.gene060636.t1.exon7;Parent=MS.gene060636.t1
chr2.2 CDS 16731609 16731694 16731609 ID=cds.MS.gene060636.t1;Parent=MS.gene060636.t1
Gene Sequence

>MS.gene060636

ATGCCTTCTTCATTTTCCTCCAAACCATTCTTCAACCCACGTCACACCATTCCCCTTCGCAGATTCTCATTCTTCATCCTCCTCATCACCTTCCTCCTCCTTTTACTCCTCATCGTTTTTCTTAAACCGTTTCAAAACAATCGCTGTCTCAACACTAACCCTAGATCCGTTCGCGTTGTTTGGGATCACGGCAACGCCGTCACCAACGGCGCCAGAAATGTTGTTGCCGATAGGCATAAGGTTATGGCATTTGTCGGTATTCAGACTGGGTTTAGATCTGTTGGAAGGCGTGAATCTTTGAGGAAGACTTGGTTTCCTTCCGATCCTAATGGACTTCAACGGTACTAATCTCTTTTTTGTTGAGGAGATGAAAAATTTATGATTCTATCATGTTTAATTCTATCAAATTGTTAATATCAATGCGAAAACAAGCTTAGGTGATTTGGACATGTATAAGGAAGATTTATGGATTCTGTAATAAGGAGAGATAGATCAAATGGAGGATAGGCAGAGGAAGACCAAGAAAAAACTATCAGAGAAACTATTAGGAAAGATTTGGAAATTAATGAGTTGGACCGAAATATGGTGTATGATAGAACATTATGGCGTAATTTGATCCATGTAGCCGAGCCCACTTAGTGGGGAAAAGGTTTTGTTAATGTCGATGTTTTGATTTTAGGATAATGTGATGTGATTGTTTTTATTGTAGTATTGAGGTTTGATTTGAAGTCTCATGTTTGGATAATTGACTTATTTTGTAGCTTATAGCATTATGATTAGCACTTATGTATAATCTATCTCTATAACTAAAGATAAAATAACATTAAATTGTTTTGGTATGAGCTGTTTACGTAAGCTATCTAAGAGAGCTTATGAACATAAGCTGAAAACAACTCATGTACATGTCATAAGCTGTTTTCATAAGTTCTTTGAAACAATTTCACAAATGCTTATGCTAGTAGATAAGCTCAAATAAGTCAATCCAAATAGGGCCTAAGTTGTGTTGTGTATTACAAGAATTGGAAGCTTCCCTTTTGTGGTCTTGTTTTTGGATTCCATTCATTACCTATGCAAAGTAGCTAGCAGTGTAAATTAAGTGCTCAAACTGCATTATGCCTTATGTTAGTCGGTTTTGATTGATTTTGGGTTTGAAAATGCAAAACATAATCAAAGTTTTTTCTTCTTCATTATATCATAATATTCTATATCATGATTCATGTGATATTGTTTAATGACAGGCTAAATGCAAATCGTTTTCAATGGTTTTACTTATCATTTTACTTGGCATCCGTCTGAATCTAGCTATTGGACTATTGTCTATTTGATTTAATGTACTTTTGTTACCGGTGCAATTTGGGGTCTGAAAATGATGTAATTTAATTATCCTCATATTGATTTATTCCTATTGCTTCCAGCTTGGAAGAAGCTACTGGATTGGCTTTTAGGTTTGTTATTGGTAGAACGAGTGATAGATCGAAGATGTCTGCACTTAAAAGGGAAATAGCTGAATATGACGATTTCATTCAATTGGATATTGAAGAGGAGTACAGTAAGCTCCCATACAAAACGTGTGTTCTGAGAATTAGTAAACTGACGAGCTTTATATCTGTAATGTGTTTCTAAGCTAAAAATATGGTCATTTATTACAGGTTGGCTTTCTTTAAAGCTGCTTACGCTCTTTTTGTAGCCGAATTTTATGTCAAAGCTGATGATGACATATATTTAAGGCCAGGTGCAATTTCTTTCAGGGTTTAACCTAGTTTTAATGTTGTTATTACATTTTCTTGAAAGAGCCAAATAATCAGGATTTTTGCAATCTTTATTGTCAGATCGTCTTTCATTACTGCTTGCAAAAGAGAGATCTCATTCCCAGACGTACATAGGATGCATGAAAAAGGGCCCTGTTTTCACTGATCCGAAACTCAAATGGTTAGTGTAAATATCTTTAATTGTGTCCTTCCTGGCTTAATTTCCGGAACTTTTCAATTTTCACCCATTTCACTTTATGATAGGCATAAAATATTTGGTTATTAAGTTGTTTCTATCATTGCATGCGATAAATATTAGAACTTTGCACTTTTACATGATAATGTTCTTGTCTTCAAAATGAAATATAGATTACAACTACTGTCTGTGGAATTTATGAATCTTTAATTTGGGAGATCAAATATTTGATAATAAATTTTAGTTAAACTGTAGCAGCCTCAAAGGGAATGAAAATCATTGCTTAATCTCATTCTTTTCCCATCTTGTTTCTTTCGTTTTCTTTTGATTTCTCCCCTTTTCCTCCAAACGTCTCAACATAAACTAGGGGTCGAATCATGTAATTTCCAATATTTATGGGGTTCTAAATTGTTATCTGCCTCTTTTTTGGGGTCATGTAGTGTGCTATCTAGCCTCTCTATAGCGACAATGAAAAGTTTTCTGTTTTCATTTTACAACCAGCATATTGGCTTCTTTGGCTTTTGGAGTAATTTTATCGGCAACTCTTGCAGGTATGAGCCATTATCTAATTTGCTTGGAAAGGAGTATTTTCTTCATGCTTATGGTCCTATATATGCTCTTTCTGCTGATGTTGTGTCAAGCTTGGTCGCTCTTAGGAATAACAGGTACCCTTTTCTTTGTCTACAACTTGCTTGCTTGTTCACTTTTTTAGATTTGAGATCGATACAGCCTTATTTGCATGCTACATATATGTTTTTCCACTATCTCACTTTTGGATTTTGCTTATTAATTCACATGCTAGAGTCAGATACCGTCTGTTCCACATCTTTGTCAGAATTGTGTTTGGTTGGCTGGTCTGTAGACCATCTGCTTTGGTTTATATAGTTGTTCTTTGATGAAAAAAGAAACTGAGAATTAACGGAGATGTTCATGTCATGTGGTCCTTGGGTTTCATAGTGTACAACTGTTAAGTTAGTAGAGATATCAATGTATTGCAGTCCTGAGGTTCATGGTCAATTTTGTATAAGCTGTGCATTTGTACTACGTGATCTTTATGCTTCCCTAGTTCATTAATTCTTTATAGTCATAAGTTTTTTCCATATCGAGCAGTGAGCAAGTTGCAAATGTTTCTTAATAATTTCTGCAAATGAGCCATTCAATTGCTTGGAGATTTAGTGGCCATGCACTGAGCATATTTCTTTTTCTGCATCCAATTCATACAATATCATACTTTATACCTTAAAGAATAGTTATGAAGTTTTTATATATTTTTTTTTTGTTTTTTTGTTTTTGCCTTTTCACAAAGGAACAAAGATCACAATCCATAATATTAGCAAATAAAAAAAAAAGATCACAATGCATAAACATGATGATTTGAGCCTTGTTCAGTCCCCTCCCTTCCATATTCCTATAATTGTGAATGTAAAGTTTGCATCCTTTTATTTTTTAAAACACAGTTTTCGGATGTTCAGCAATGAGGATGTTACAATTGGAGCTTGGATGCTTGCAATGAATGTCAACCATGAGAATATTCATGAACTTTGTTCTCCAGAATGTACATCGACATCAATCGCTGTTTGGGATATTCCAAAGTGTTCAGGTTTGTATTTATGTTCCACAAAATGTTAAAAATATATATATAGAGGATGGATATATCGACTCCAAGAGTAAGTCTATAGACTTACTACAAATCACTTCCATCTATTTTGTTTTAATCTAACGGTCTTAGTTAATTATCTGATTGTGCACCAAACAATATTCCACACCTCTTCAACCATTGATTGTTCCTTCAGCGTCTTTCAATTGTTCTGTAAAGATCCAAAGCAGTTTTTTACGATCTATACCTTCAGACCAAAAAATTCAGCGTTGTATTTCAATTGCCTCTTCCCTGGCTACCCTCCCTTGTCCCCACCACCTCCAACTCTAAGCTTCTTTTTTAATTAACTAGTCATGATAAATTCAGACCGATTTGCCTATGTAACTCTTTCAATTATTTACTGGTGCACCTTCTTGGCATCATTTAAACCGATCCGCCTATGTAATTATCCAGTTCTTTTGCATTGAACAACTTCAATTGTTTCTCCATCTCTCAGCTTTGAACTTCTTATTTTGCTATCTTGGTGAATGTAAGCATGCTTGCGCTTTTCATTTCGCACATGTTTTTGAATTTCTACCTTGAGGATTTCAATCTTCCCTCCACCACACAAGGTTTCTTGATTTATGTGTGACAGAGGGGATGAAGTATTTTGAGATAAAAGCAACGGAAGAGAACAGCGCGACCGAAGAATGAACTCGACTCGGTAATGCTTGAAGATTGGATTCATTAAGGTAGGAAAACAAAAACATACGTGGATAAAGAACCAGAACCCCCTGAAATGCACTTCAAGGGGGCTGAAAATGAATTTCAAACTTAAGAGTTAGACGCTGAACATTTCAAGTTCAAAGAAATTATAATCATAAATTCATTAATCATCACTTCACCGCGATTCGTCAAAAAGAAAATTTTAGTTAAGAGATCCAGAAATTGATAATATTCACCTATTCGTCTATACCCAACCACATCACACGAACCCTTAACCAACAGCGATACAGTTTTCAACTTAACATTTGTTGAGGCACCTTCTTGGCATCTCTCAAACCGATTTTCTTATGTAATTCTCCAATTCTATTGCATTGGACAGCTTAAATTGTTTCTCCATCTCTCTCTTATGTTATTCATTATTGTATATGCTTATATTATTCAATCAGCATTTAATGATTTTTGGTCAGACATATGCACATGTGGTGTAAAATGCAAATCAAAGCAAAATCTTTTTTCTGAATGATGATTTGGATGGTGTTTACCTACAGGTCTCTGTAATCCAGAAAAGAGAATGTTGGAACTCCATCAAATGGACAGCTGCATTCAGAGTCCAACAATGGAATCTGATGAATAG
Protein sequence

>MS.gene060636.t1

MPSSFSSKPFFNPRHTIPLRRFSFFILLITFLLLLLLIVFLKPFQNNRCLNTNPRSVRVVWDHGNAVTNGARNVVADRHKVMAFVGIQTGFRSVGRRESLRKTWFPSDPNGLQRLEEATGLAFRFVIGRTSDRSKMSALKREIAEYDDFIQLDIEEEYSKLPYKTLAFFKAAYALFVAEFYVKADDDIYLRPDRLSLLLAKERSHSQTYIGCMKKGPVFTDPKLKWYEPLSNLLGKEYFLHAYGPIYALSADVVSSLVALRNNSFRMFSNEDVTIGAWMLAMNVNHENIHELCSPECTSTSIAVWDIPKCSGLCNPEKRMLELHQMDSCIQSPTMESDE