AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91342


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91342.t1 MTR_1g106005 99.778 450 1 0 1 450 1 450 0.0 937
MS.gene91342.t1 MTR_3g110720 97.773 449 10 0 1 449 1 449 0.0 914
MS.gene91342.t1 MTR_4g097830 97.118 451 12 1 1 450 1 451 0.0 910
MS.gene91342.t1 MTR_8g085980 92.644 435 32 0 1 435 1 435 0.0 832
MS.gene91342.t1 MTR_7g085800 91.196 443 38 1 1 443 1 442 0.0 827
MS.gene91342.t1 MTR_6g029190 83.149 451 72 2 1 450 1 448 0.0 776
MS.gene91342.t1 MTR_2g041670 72.829 449 117 2 1 449 1 444 0.0 653
MS.gene91342.t1 MTR_2g041400 74.359 429 105 2 1 429 1 424 0.0 640
MS.gene91342.t1 MTR_4g094535 41.705 434 243 2 1 434 1 424 4.57e-124 368
MS.gene91342.t1 MTR_7g089120 42.105 437 237 4 1 434 1 424 1.37e-123 367
MS.gene91342.t1 MTR_4g017630 41.244 434 245 2 1 434 1 424 1.71e-123 367
MS.gene91342.t1 MTR_3g113970 40.961 437 244 3 1 434 1 426 2.15e-123 366
MS.gene91342.t1 MTR_4g019110 42.105 437 237 3 1 434 1 424 3.70e-123 366
MS.gene91342.t1 MTR_4g019090 41.244 434 245 2 1 434 1 424 9.31e-123 365
MS.gene91342.t1 MTR_8g107250 41.244 434 246 2 1 434 1 425 1.21e-122 364
MS.gene91342.t1 MTR_1g101130 41.244 434 245 2 1 434 1 424 1.60e-122 364
MS.gene91342.t1 MTR_2g031310 41.244 434 245 2 1 434 1 424 2.35e-122 363
MS.gene91342.t1 MTR_8g098360 39.545 440 256 2 1 440 1 430 4.44e-121 360
MS.gene91342.t1 MTR_3g063410 98.052 154 3 0 252 405 24 177 4.39e-111 325
MS.gene91342.t1 MTR_3g063410 97.826 138 3 0 268 405 1 138 3.00e-97 289
MS.gene91342.t1 MTR_7g117050 31.390 446 283 9 2 433 3 439 2.92e-76 246
MS.gene91342.t1 MTR_6g075280 46.875 96 32 1 355 450 608 684 3.32e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91342.t1 AT1G04820 96.000 450 18 0 1 450 1 450 0.0 905
MS.gene91342.t1 AT1G50010 96.000 450 18 0 1 450 1 450 0.0 905
MS.gene91342.t1 AT4G14960 95.778 450 19 0 1 450 1 450 0.0 904
MS.gene91342.t1 AT5G19780 93.563 435 28 0 1 435 1 435 0.0 838
MS.gene91342.t1 AT5G19770 93.563 435 28 0 1 435 1 435 0.0 838
MS.gene91342.t1 AT1G64740 90.115 435 43 0 1 435 1 435 0.0 812
MS.gene91342.t1 AT4G14960 93.612 407 19 1 1 407 1 400 0.0 796
MS.gene91342.t1 AT1G75780 41.475 434 245 2 1 434 1 425 2.27e-125 371
MS.gene91342.t1 AT5G12250 41.648 437 239 4 1 434 1 424 7.54e-124 367
MS.gene91342.t1 AT5G62700 41.475 434 244 2 1 434 1 424 1.59e-123 367
MS.gene91342.t1 AT5G62690 41.475 434 244 2 1 434 1 424 1.59e-123 367
MS.gene91342.t1 AT1G20010 41.014 434 247 2 1 434 1 425 5.73e-123 365
MS.gene91342.t1 AT2G29550 41.244 434 245 2 1 434 1 424 9.34e-123 365
MS.gene91342.t1 AT4G20890 41.475 434 244 2 1 434 1 424 1.45e-122 364
MS.gene91342.t1 AT5G23860 41.244 434 245 2 1 434 1 424 2.00e-122 364
MS.gene91342.t1 AT5G23860 41.244 434 245 2 1 434 1 424 2.00e-122 364
MS.gene91342.t1 AT5G44340 41.244 434 245 3 1 434 1 424 1.75e-120 359
MS.gene91342.t1 AT5G05620 32.063 446 280 9 2 433 3 439 1.74e-77 249
MS.gene91342.t1 AT3G61650 31.614 446 282 9 2 433 3 439 3.74e-76 246

Find 138 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGATGTTGCTGTTCTTC+TGG 0.208803 1.3:-72558344 MS.gene91342:CDS
AGAAAGCATGAAATGGATTC+TGG 0.259381 1.3:+72558028 None:intergenic
ATGAAATGGATTCTGGGATA+TGG 0.263566 1.3:+72558035 None:intergenic
GAGCGTCTGTCTGTTGATTA+TGG 0.264658 1.3:-72558472 MS.gene91342:CDS
ACTGCTTCTTTGAGGTTTGA+TGG 0.277274 1.3:-72558101 MS.gene91342:CDS
GGAGGAACTGGTTCTGGTCT+TGG 0.278416 1.3:-72558508 MS.gene91342:CDS
CATCCTTGACTGCTTCTTTG+AGG 0.310525 1.3:-72558109 MS.gene91342:CDS
CATTGGTCAAGCCGGTATTC+AGG 0.339749 1.3:-72562553 MS.gene91342:CDS
CCTCTCCACCCACTCCCTCT+TGG 0.347748 1.3:-72558371 MS.gene91342:CDS
GCCTTCTCAGCAGATATAAC+TGG 0.348083 1.3:+72557996 None:intergenic
CAAGAGGACCATTCAGTTTG+TGG 0.350369 1.3:-72557805 MS.gene91342:CDS
CAGCCACCTACTGTTGTTCC+TGG 0.350820 1.3:-72557744 MS.gene91342:CDS
TTCAGGTCGGAAATGCTTGC+TGG 0.378485 1.3:-72562536 MS.gene91342:CDS
GTTGGAGGAGGAACTGGTTC+TGG 0.384483 1.3:-72558514 MS.gene91342:CDS
TTGCCACTGATGAGCTGCTC+AGG 0.398345 1.3:+72558766 None:intergenic
AATGCTGTTGGAGGAGGAAC+TGG 0.399457 1.3:-72558520 MS.gene91342:CDS
CAGTCTTGTCACTCGGCATT+TGG 0.399542 1.3:+72558929 None:intergenic
CCGTGAGGATCTTGCTGCTT+TGG 0.402547 1.3:-72557553 MS.gene91342:CDS
CTGGTATGTGGGTGAGGGTA+TGG 0.404210 1.3:-72557598 MS.gene91342:CDS
CCTTAACCGTCTTGTTTCTC+AGG 0.406634 1.3:-72558257 MS.gene91342:intron
TCACTCGGCATTTGGCCATC+AGG 0.408719 1.3:+72558937 None:intergenic
GAAAAGGATTATGAAGAAGT+TGG 0.409613 1.3:-72557531 MS.gene91342:CDS
TTTGTGGATTGGTGCCCTAC+TGG 0.413566 1.3:-72557789 MS.gene91342:CDS
AGAGATCGTTGATCTGTGTT+TGG 0.419543 1.3:-72558599 MS.gene91342:CDS
AACACCTTCTTCAGCGAGAC+TGG 0.421898 1.3:-72558883 MS.gene91342:CDS
ATGGAAAGAAATCCAAGCTT+GGG 0.425337 1.3:-72558453 MS.gene91342:CDS
ACAAGTGTGGCTGAGGTGTT+TGG 0.429571 1.3:-72557672 MS.gene91342:CDS
TACTGTCTATCCCTCCCCTC+AGG 0.434518 1.3:-72558428 MS.gene91342:CDS
ACGGTTAAGGTTGGTGTAAG+TGG 0.452971 1.3:+72558270 None:intergenic
GGATCTTGCTGCTTTGGAAA+AGG 0.453193 1.3:-72557547 MS.gene91342:CDS
GACAGCAGCATTCACATCCT+TGG 0.453229 1.3:+72557842 None:intergenic
TGCATTTGTTCACTGGTATG+TGG 0.454287 1.3:-72557610 MS.gene91342:CDS
TTCTTCAGCGAGACTGGTGC+TGG 0.455019 1.3:-72558877 MS.gene91342:CDS
CATATGAAGAAAGCATGAAA+TGG 0.460970 1.3:+72558021 None:intergenic
CACAAACTGAATGGTCCTCT+TGG 0.463910 1.3:+72557806 None:intergenic
CCTGAGAAACAAGACGGTTA+AGG 0.472342 1.3:+72558257 None:intergenic
CCAAGCGTGCATTTGTTCAC+TGG 0.476016 1.3:-72557617 MS.gene91342:CDS
TGTTCACTGGTATGTGGGTG+AGG 0.477980 1.3:-72557604 MS.gene91342:CDS
GAAGAAGTTGGTGCCGAGTC+TGG 0.479857 1.3:-72557519 MS.gene91342:CDS
TGAAATGGATTCTGGGATAT+GGG 0.482192 1.3:+72558036 None:intergenic
GAAAGCATGAAATGGATTCT+GGG 0.486512 1.3:+72558029 None:intergenic
GTGGGTGAGGGTATGGAAGA+AGG 0.492111 1.3:-72557591 MS.gene91342:CDS
ATGACCACGGGCAAAGTTGT+TGG 0.493110 1.3:+72558732 None:intergenic
GATATGGGACCAAGTTGGTC+TGG 0.495701 1.3:+72558051 None:intergenic
AGCATTTCCGACCTGAATAC+CGG 0.501769 1.3:+72562542 None:intergenic
GGACCATTCAGTTTGTGGAT+TGG 0.503034 1.3:-72557800 MS.gene91342:CDS
TATGGAAAGAAATCCAAGCT+TGG 0.504088 1.3:-72558454 MS.gene91342:CDS
AAGCTATCTATGACATCTGT+AGG 0.504342 1.3:-72558315 MS.gene91342:CDS
TCCTGGTGGTGACCTTGCTA+AGG 0.511101 1.3:-72557727 MS.gene91342:CDS
TGAGGGCGGTGATGAAGATA+TGG 0.511219 1.3:-72557496 MS.gene91342:CDS
CAGTGTGCTCCAAGAGGGAG+TGG 0.513536 1.3:+72558362 None:intergenic
ACAGCAGCATTCACATCCTT+GGG 0.514766 1.3:+72557843 None:intergenic
CCAGTGAACAAATGCACGCT+TGG 0.525328 1.3:+72557617 None:intergenic
CACTTAGCCATCATAGATGA+TGG 0.525506 1.3:+72557924 None:intergenic
CCGAGTGACAAGACTGTTGG+AGG 0.526598 1.3:-72558922 MS.gene91342:CDS
CCCTCGCCATGGAAAGTACA+TGG 0.526872 1.3:-72557898 MS.gene91342:CDS
TTCTTATATGCACAGCCTGA+TGG 0.528986 1.3:-72558952 MS.gene91342:intron
AAACTCAACAAGTGTGGCTG+AGG 0.529684 1.3:-72557679 MS.gene91342:CDS
TCAGTTCACATTGGTCAAGC+CGG 0.536056 1.3:-72562561 MS.gene91342:CDS
GTGGAGAGGACACTGTTGTA+TGG 0.536266 1.3:+72558385 None:intergenic
AGCACCAGTCTCGCTGAAGA+AGG 0.536901 1.3:+72558879 None:intergenic
AAGCTTGCGGATAACTGCAC+TGG 0.544380 1.3:-72558565 MS.gene91342:CDS
ATGCCGAGTGACAAGACTGT+TGG 0.545145 1.3:-72558925 MS.gene91342:CDS
TGATGGCTCAAAAGCACTGT+TGG 0.546926 1.3:+72557941 None:intergenic
GATAACTGCACTGGTCTCCA+AGG 0.549224 1.3:-72558556 MS.gene91342:CDS
GACTGAATTCCAGACCAACT+TGG 0.549713 1.3:-72558060 MS.gene91342:CDS
GCACCAATCCACAAACTGAA+TGG 0.551570 1.3:+72557797 None:intergenic
GAGGTGGAAACCTGAGGGGA+GGG 0.551933 1.3:+72558418 None:intergenic
ATAGACAGTAAACCCAAGCT+TGG 0.556586 1.3:+72558441 None:intergenic
CGGTTAAGGTTGGTGTAAGT+GGG 0.558069 1.3:+72558271 None:intergenic
CAACAGAGGTGGAAACCTGA+GGG 0.558387 1.3:+72558413 None:intergenic
AGCAAGCCATGTACTTTCCA+TGG 0.560681 1.3:+72557892 None:intergenic
TACTGTCTCGAACACGGCAT+CGG 0.561154 1.3:-72562507 MS.gene91342:CDS
TCAGGTCGGAAATGCTTGCT+GGG 0.562273 1.3:-72562535 MS.gene91342:CDS
GCTGCTCAGGATGGAAGAGC+TGG 0.564014 1.3:+72558779 None:intergenic
CAAAGCAGCAAGATCCTCAC+GGG 0.564402 1.3:+72557554 None:intergenic
GTTATCGATGAGGTGAGGAC+TGG 0.564950 1.3:-72558811 MS.gene91342:CDS
GTTGGTGCCGAGTCTGGTGA+GGG 0.565547 1.3:-72557513 MS.gene91342:CDS
AAACCTCAAAGAAGCAGTCA+AGG 0.571224 1.3:+72558106 None:intergenic
ACCACGGGCAAAGTTGTTGG+CGG 0.573940 1.3:+72558735 None:intergenic
CACTGATGAGCTGCTCAGGA+TGG 0.573952 1.3:+72558770 None:intergenic
TGCCCTACTGGTTTCAAGTG+TGG 0.577249 1.3:-72557777 MS.gene91342:CDS
GCATTTGTTCACTGGTATGT+GGG 0.578176 1.3:-72557609 MS.gene91342:CDS
ATCACCGCCCTCACCAGACT+CGG 0.580489 1.3:+72557506 None:intergenic
GGACCGCATCAGAAAGCTTG+CGG 0.580489 1.3:-72558578 MS.gene91342:CDS
CCAAAGCAGCAAGATCCTCA+CGG 0.583986 1.3:+72557553 None:intergenic
TCCAGTTATATCTGCTGAGA+AGG 0.585678 1.3:-72557997 MS.gene91342:CDS
GCCATGTACTTTCCATGGCG+AGG 0.586030 1.3:+72557897 None:intergenic
ACCTTAGCAAGGTCACCACC+AGG 0.592703 1.3:+72557726 None:intergenic
GTTCACTGGTATGTGGGTGA+GGG 0.594621 1.3:-72557603 MS.gene91342:CDS
CCATGTACTTTCCATGGCGA+GGG 0.595056 1.3:+72557898 None:intergenic
TATCCGCAAGCTTTCTGATG+CGG 0.599158 1.3:+72558575 None:intergenic
AGTTGGTGCCGAGTCTGGTG+AGG 0.599254 1.3:-72557514 MS.gene91342:CDS
GTGCTCCAAGAGGGAGTGGG+TGG 0.600125 1.3:+72558366 None:intergenic
AGTGGGACGCTCAATGTCGA+GGG 0.600615 1.3:+72558288 None:intergenic
AGTGACAAGACTGTTGGAGG+CGG 0.604399 1.3:-72558919 MS.gene91342:CDS
AAGTGGGACGCTCAATGTCG+AGG 0.610089 1.3:+72558287 None:intergenic
CCGAGGTGATGTTGTTCCCA+AGG 0.612147 1.3:-72557859 MS.gene91342:CDS
CATCCTGAGCAGCTCATCAG+TGG 0.614786 1.3:-72558769 MS.gene91342:CDS
ACAACAGAGGTGGAAACCTG+AGG 0.615914 1.3:+72558412 None:intergenic
AGGATGGAAGAGCTGGCGAT+AGG 0.617520 1.3:+72558786 None:intergenic
CTGCCCTCTGTACCTTAGCA+AGG 0.618015 1.3:+72557715 None:intergenic
GCCGCCAACAACTTTGCCCG+TGG 0.620859 1.3:-72558736 MS.gene91342:CDS
GCTAAGTGTGACCCTCGCCA+TGG 0.621505 1.3:-72557909 MS.gene91342:CDS
CCAAGAGGGAGTGGGTGGAG+AGG 0.621744 1.3:+72558371 None:intergenic
CTCACCTCATCGATAACAGT+GGG 0.621848 1.3:+72558817 None:intergenic
AACATCAGTGTGCTCCAAGA+GGG 0.623268 1.3:+72558357 None:intergenic
ATACCACACTTGAAACCAGT+AGG 0.623812 1.3:+72557774 None:intergenic
AGAAACAAGACGGTTAAGGT+TGG 0.623820 1.3:+72558261 None:intergenic
CCTCCAACAGTCTTGTCACT+CGG 0.624881 1.3:+72558922 None:intergenic
ATAACTGCACTGGTCTCCAA+GGG 0.627993 1.3:-72558555 MS.gene91342:CDS
CCACCTACTGTTGTTCCTGG+TGG 0.628220 1.3:-72557741 MS.gene91342:CDS
TCACCACCAGGAACAACAGT+AGG 0.629041 1.3:+72557738 None:intergenic
TCTGGGATATGGGACCAAGT+TGG 0.629717 1.3:+72558046 None:intergenic
AGAGGTGGAAACCTGAGGGG+AGG 0.631975 1.3:+72558417 None:intergenic
GAGCTTTACTGTCTCGAACA+CGG 0.642769 1.3:-72562513 MS.gene91342:CDS
AGTGTGCTCCAAGAGGGAGT+GGG 0.645027 1.3:+72558363 None:intergenic
GATTTCAAACTCAACAAGTG+TGG 0.651909 1.3:-72557685 MS.gene91342:CDS
GAGTGCATTTCAGTTCACAT+TGG 0.652240 1.3:-72562570 MS.gene91342:CDS
TGACCTTGCTAAGGTACAGA+GGG 0.652678 1.3:-72557718 MS.gene91342:CDS
GGTCAAGCCGGTATTCAGGT+CGG 0.654170 1.3:-72562549 MS.gene91342:CDS
CATACTGGTATAATGACCAC+GGG 0.654535 1.3:+72558720 None:intergenic
CAACATCAGTGTGCTCCAAG+AGG 0.655535 1.3:+72558356 None:intergenic
TACCACACTTGAAACCAGTA+GGG 0.657871 1.3:+72557775 None:intergenic
CCACCAGGAACAACAGTAGG+TGG 0.665309 1.3:+72557741 None:intergenic
GTGACCTTGCTAAGGTACAG+AGG 0.667763 1.3:-72557719 MS.gene91342:CDS
ACATACTGGTATAATGACCA+CGG 0.669902 1.3:+72558719 None:intergenic
GGTGCCGAGTCTGGTGAGGG+CGG 0.669914 1.3:-72557510 MS.gene91342:CDS
GTATGGCTCAACAACAGAGG+TGG 0.674184 1.3:+72558402 None:intergenic
TGAGCCCACTGTTATCGATG+AGG 0.676846 1.3:-72558821 MS.gene91342:CDS
TCGCTACAATCAAAACCAAG+AGG 0.680258 1.3:-72557821 MS.gene91342:CDS
TAGCTACCTGAGAAACAAGA+CGG 0.682350 1.3:+72558251 None:intergenic
CCACTGTTATCGATGAGGTG+AGG 0.685674 1.3:-72558816 MS.gene91342:CDS
CCTCACCTCATCGATAACAG+TGG 0.687640 1.3:+72558816 None:intergenic
GTTGTATGGCTCAACAACAG+AGG 0.698181 1.3:+72558399 None:intergenic
GCTTGCTGTTTGATGTACCG+AGG 0.706496 1.3:-72557876 MS.gene91342:CDS
AACAGAGGTGGAAACCTGAG+GGG 0.715815 1.3:+72558414 None:intergenic
CCTTGGGAACAACATCACCT+CGG 0.723454 1.3:+72557859 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAATAAATAATAAA+AGG - chr1.3:72559053-72559072 MS.gene91342:intron 0.0%
!! AAATTGTTAACATTAATTAT+AGG - chr1.3:72559733-72559752 MS.gene91342:intron 10.0%
!! AATTATAAAAAAAAATCATG+TGG + chr1.3:72558349-72558368 None:intergenic 10.0%
!! TTAAATTAAAATTGGAAAAA+TGG - chr1.3:72560277-72560296 MS.gene91342:intron 10.0%
!! AAAAAGGATTATCATAAAAA+AGG - chr1.3:72560523-72560542 MS.gene91342:intron 15.0%
!! AAAAAGGTTTATATTCAAAA+AGG - chr1.3:72560539-72560558 MS.gene91342:intron 15.0%
!! AGATAAAATTGAAAAAACAA+CGG + chr1.3:72557716-72557735 None:intergenic 15.0%
!!! AATCATTTTTTTGTTAAATG+AGG + chr1.3:72559973-72559992 None:intergenic 15.0%
!!! AATTCGTTTTTATCTAATTT+CGG - chr1.3:72558730-72558749 MS.gene91342:CDS 15.0%
!!! ATTTTCCATGTTAAATTAAT+CGG - chr1.3:72557774-72557793 MS.gene91342:CDS 15.0%
!!! ATTTTGTTGACATTAATTAT+AGG - chr1.3:72559853-72559872 MS.gene91342:intron 15.0%
!!! TCTATTAATGAGTATTTTTT+GGG + chr1.3:72559588-72559607 None:intergenic 15.0%
!!! TTTTAAAAAACCCAAAAATT+AGG - chr1.3:72559609-72559628 MS.gene91342:intron 15.0%
!! AAATGAAAGCTTAATTTCAA+GGG - chr1.3:72558120-72558139 MS.gene91342:intron 20.0%
!! AGTATCAAACTTTAATTGAA+TGG + chr1.3:72561005-72561024 None:intergenic 20.0%
!! ATATTGAGATTCATGTTATT+TGG - chr1.3:72560377-72560396 MS.gene91342:intron 20.0%
!! ATCAAATTTAGAAACAATAC+AGG + chr1.3:72557756-72557775 None:intergenic 20.0%
!! ATTTAATCTCTATGTTATTG+TGG - chr1.3:72558313-72558332 MS.gene91342:CDS 20.0%
!! TAAATGAAAGCTTAATTTCA+AGG - chr1.3:72558119-72558138 MS.gene91342:CDS 20.0%
!! TAATATGAGAGAGAAAAATA+CGG + chr1.3:72559187-72559206 None:intergenic 20.0%
!! TAGTGATTTGATAAAAAATC+TGG + chr1.3:72558453-72558472 None:intergenic 20.0%
!! TCAATTAAAGTTTGATACTA+TGG - chr1.3:72561006-72561025 MS.gene91342:intron 20.0%
!! TCTGTTTATGAGTTAATATA+TGG - chr1.3:72558077-72558096 MS.gene91342:CDS 20.0%
!! TGTTTATTTCATGATCTTAA+CGG - chr1.3:72558282-72558301 MS.gene91342:CDS 20.0%
!! TTAAAATTGGAAAAATGGAT+TGG - chr1.3:72560282-72560301 MS.gene91342:intron 20.0%
!! TTACATAACCTAATAACAAA+CGG + chr1.3:72557903-72557922 None:intergenic 20.0%
!! TTACATAACCTAATAACATA+CGG + chr1.3:72560906-72560925 None:intergenic 20.0%
!! TTGAAATTAGGAAAATTCTA+TGG + chr1.3:72560780-72560799 None:intergenic 20.0%
!! TTGTTAACATTAATTATAGG+TGG - chr1.3:72559736-72559755 MS.gene91342:intron 20.0%
!! TTGTTTAATAAAGAAGATGA+TGG - chr1.3:72560428-72560447 MS.gene91342:intron 20.0%
!!! AAACGAGTTGAATTTAAATT+AGG - chr1.3:72560312-72560331 MS.gene91342:intron 20.0%
!!! AACGAGTTGAATTTAAATTA+GGG - chr1.3:72560313-72560332 MS.gene91342:intron 20.0%
!!! AGTAATAAATGCCTAATTTT+TGG + chr1.3:72559623-72559642 None:intergenic 20.0%
!!! ATTCGTTTTTATCTAATTTC+GGG - chr1.3:72558731-72558750 MS.gene91342:CDS 20.0%
!!! GTAATAAATGCCTAATTTTT+GGG + chr1.3:72559622-72559641 None:intergenic 20.0%
!!! GTCTATTAATGAGTATTTTT+TGG + chr1.3:72559589-72559608 None:intergenic 20.0%
!!! TAAAATTGGAAAAATGGATT+GGG - chr1.3:72560283-72560302 MS.gene91342:intron 20.0%
!!! TATTAAGTTGTTAAACATCT+CGG + chr1.3:72560065-72560084 None:intergenic 20.0%
! AAATATGTTATCTATGTTCG+TGG - chr1.3:72560869-72560888 MS.gene91342:intron 25.0%
! AATATGAGAGAGAAAAATAC+GGG + chr1.3:72559186-72559205 None:intergenic 25.0%
! ATAACAAATCTGAACGAAAA+TGG + chr1.3:72557614-72557633 None:intergenic 25.0%
! ATCACAAATGAGTTATAATG+TGG + chr1.3:72561383-72561402 None:intergenic 25.0%
! ATTAACATTTGCCAACAAAA+TGG - chr1.3:72559203-72559222 MS.gene91342:intron 25.0%
! ATTTACAAAAATCCATGTCA+AGG - chr1.3:72559397-72559416 MS.gene91342:intron 25.0%
! CTATTAATGAATCAATTGAC+TGG - chr1.3:72559147-72559166 MS.gene91342:intron 25.0%
! GCAGATTCAACAATAATATA+CGG + chr1.3:72560043-72560062 None:intergenic 25.0%
! TATTAGATCCGTATGTTATT+AGG - chr1.3:72560895-72560914 MS.gene91342:intron 25.0%
! TTATTTCAAGAGCTCATATA+TGG - chr1.3:72561085-72561104 MS.gene91342:intron 25.0%
! TTGATGTTCATAATCTTTCT+GGG - chr1.3:72560467-72560486 MS.gene91342:intron 25.0%
! TTTCCTTAGATCTGAAAAAT+AGG + chr1.3:72557688-72557707 None:intergenic 25.0%
!! ATGTGTGTTATTAATACAGT+TGG + chr1.3:72559795-72559814 None:intergenic 25.0%
!! CAACACTATGATTTGAAATT+AGG + chr1.3:72560792-72560811 None:intergenic 25.0%
!! CAGTCAATTGATTCATTAAT+AGG + chr1.3:72559149-72559168 None:intergenic 25.0%
!! TTTAATAAAGAAGATGATGG+AGG - chr1.3:72560431-72560450 MS.gene91342:intron 25.0%
!!! AAACTGTTTTTTTCTCGTTA+AGG + chr1.3:72559558-72559577 None:intergenic 25.0%
!!! AACTGTTTTTTTCTCGTTAA+GGG + chr1.3:72559557-72559576 None:intergenic 25.0%
!!! AAGGATAATGTATTGATTGA+TGG - chr1.3:72559416-72559435 MS.gene91342:intron 25.0%
!!! AATTTGTGTCATTTTCAGTT+GGG - chr1.3:72561437-72561456 MS.gene91342:intron 25.0%
!!! AGGATAATGTATTGATTGAT+GGG - chr1.3:72559417-72559436 MS.gene91342:intron 25.0%
!!! ATTTTTTTGTTAAATGAGGC+TGG + chr1.3:72559969-72559988 None:intergenic 25.0%
!!! CTTTGTTTTTGATTGTTTTC+AGG - chr1.3:72561923-72561942 MS.gene91342:intron 25.0%
!!! GTTGTTTTGTTATGTTATCT+TGG - chr1.3:72560808-72560827 MS.gene91342:intron 25.0%
!!! TAATTTGTGTCATTTTCAGT+TGG - chr1.3:72561436-72561455 MS.gene91342:intron 25.0%
!!! TAGCTTTAGATTAAAACTGA+AGG + chr1.3:72559251-72559270 None:intergenic 25.0%
!!! TATTAGATCCGTTTGTTATT+AGG - chr1.3:72557892-72557911 MS.gene91342:CDS 25.0%
AAAAAGAATTCATGTGTGGT+TGG + chr1.3:72558671-72558690 None:intergenic 30.0%
AAATCTGAACGAAAATGGAA+TGG + chr1.3:72557609-72557628 None:intergenic 30.0%
AACAATCAACAATTGAGAAG+TGG + chr1.3:72560944-72560963 None:intergenic 30.0%
AAGGGATGAATCATAATTCA+TGG + chr1.3:72559290-72559309 None:intergenic 30.0%
ACAATTCTGATTGTGAATTG+CGG - chr1.3:72561852-72561871 MS.gene91342:intron 30.0%
AGGGATGAATCATAATTCAT+GGG + chr1.3:72559289-72559308 None:intergenic 30.0%
CAGATCCGATTAATTTAACA+TGG + chr1.3:72557782-72557801 None:intergenic 30.0%
CTAAACAAAAATCCATGTCA+AGG - chr1.3:72559343-72559362 MS.gene91342:intron 30.0%
GAAAAGGATTATGAAGAAGT+TGG - chr1.3:72562530-72562549 MS.gene91342:CDS 30.0%
GAAGAAAAAGAATTCATGTG+TGG + chr1.3:72558675-72558694 None:intergenic 30.0%
GAGATGAAAAAGTGATAAAG+TGG + chr1.3:72558384-72558403 None:intergenic 30.0%
GTCATCACTTAAAATCTGAT+TGG + chr1.3:72558200-72558219 None:intergenic 30.0%
GTTGATGTTCATAATCTTTC+TGG - chr1.3:72560466-72560485 MS.gene91342:intron 30.0%
TCAATACATTATCCTTGACA+TGG + chr1.3:72559412-72559431 None:intergenic 30.0%
TCATGAAATAAACATGTCCA+TGG + chr1.3:72558276-72558295 None:intergenic 30.0%
TCTTTATCGTCGTTCAAAAT+CGG + chr1.3:72560240-72560259 None:intergenic 30.0%
TGAATAGCAGTAAAATAGAG+AGG - chr1.3:72558980-72558999 MS.gene91342:intron 30.0%
TGTAATATTTGTGAAATCGC+TGG - chr1.3:72557842-72557861 MS.gene91342:CDS 30.0%
TGTTGGGACAAATTCTAATA+TGG - chr1.3:72558228-72558247 MS.gene91342:intron 30.0%
TTAGATTAAAACTGAAGGTC+TGG + chr1.3:72559246-72559265 None:intergenic 30.0%
! CATATGAAGAAAGCATGAAA+TGG + chr1.3:72562043-72562062 None:intergenic 30.0%
! CTTTTGTGTTGAGAAGAAAA+TGG - chr1.3:72560343-72560362 MS.gene91342:intron 30.0%
! GAATTCTTGTTTGAATCTTG+CGG - chr1.3:72557946-72557965 MS.gene91342:CDS 30.0%
! GACTTAAAGTTATGCTTTTC+TGG - chr1.3:72558885-72558904 MS.gene91342:CDS 30.0%
! TCAAAAAAGCTAGTCTAAAG+TGG - chr1.3:72560628-72560647 MS.gene91342:intron 30.0%
! TTTGTTATATGCGTTTCTCT+AGG - chr1.3:72557626-72557645 MS.gene91342:CDS 30.0%
!! AGTCGTTCAATTGACTTTTT+CGG + chr1.3:72560754-72560773 None:intergenic 30.0%
!! ATACAGTTGGTAGAGATTTA+CGG + chr1.3:72559782-72559801 None:intergenic 30.0%
!! GGATTTTTGTTTAGTGGAAA+AGG + chr1.3:72559337-72559356 None:intergenic 30.0%
!! GTTCCTATTTTTCAGATCTA+AGG - chr1.3:72557682-72557701 MS.gene91342:CDS 30.0%
!! TAAAAACGAATTTGCTAAGC+AGG + chr1.3:72558722-72558741 None:intergenic 30.0%
!! TGACATGGATTTTTGTTTAG+TGG + chr1.3:72559343-72559362 None:intergenic 30.0%
!!! AAGTTATGCTTTTCTGGTTT+TGG - chr1.3:72558891-72558910 MS.gene91342:CDS 30.0%
!!! AGTTATGCTTTTCTGGTTTT+GGG - chr1.3:72558892-72558911 MS.gene91342:CDS 30.0%
!!! TTTTTGGTTTTCAATGCTGT+TGG - chr1.3:72561529-72561548 MS.gene91342:intron 30.0%
AAAAACTGATGATCGTTCAG+GGG + chr1.3:72559314-72559333 None:intergenic 35.0%
AAGATCTACAAAAACAGCAC+GGG + chr1.3:72561221-72561240 None:intergenic 35.0%
AAGCTATCTATGACATCTGT+AGG - chr1.3:72561746-72561765 MS.gene91342:intron 35.0%
AAGTCAGGAGAATGATTCTT+CGG - chr1.3:72558156-72558175 MS.gene91342:intron 35.0%
ACATACTGGTATAATGACCA+CGG + chr1.3:72561345-72561364 None:intergenic 35.0%
ATGGAAAGAAATCCAAGCTT+GGG - chr1.3:72561608-72561627 MS.gene91342:intron 35.0%
ATTGAAATTTCATCGAGCTG+TGG - chr1.3:72559463-72559482 MS.gene91342:intron 35.0%
CAAGATCTACAAAAACAGCA+CGG + chr1.3:72561222-72561241 None:intergenic 35.0%
CATTGAAAACCAAAAACCCT+TGG + chr1.3:72561525-72561544 None:intergenic 35.0%
CTTCATCTTCTACATCTAGT+CGG + chr1.3:72558948-72558967 None:intergenic 35.0%
GAAAAACTGATGATCGTTCA+GGG + chr1.3:72559315-72559334 None:intergenic 35.0%
GATTTCAAACTCAACAAGTG+TGG - chr1.3:72562376-72562395 MS.gene91342:intron 35.0%
GGGATGAATCATAATTCATG+GGG + chr1.3:72559288-72559307 None:intergenic 35.0%
TAAAGTGGTACATATTGAGC+AGG - chr1.3:72560643-72560662 MS.gene91342:intron 35.0%
TAGAGAGATAATCCTTGACA+TGG + chr1.3:72559358-72559377 None:intergenic 35.0%
TATGGAAAGAAATCCAAGCT+TGG - chr1.3:72561607-72561626 MS.gene91342:intron 35.0%
TGAAAAGGGTTAAAATGACC+CGG + chr1.3:72560180-72560199 None:intergenic 35.0%
TGAAATAAACATGTCCATGG+TGG + chr1.3:72558273-72558292 None:intergenic 35.0%
TGATAAAGTGGAGAGAGAAT+TGG + chr1.3:72558372-72558391 None:intergenic 35.0%
TGGCAATTGCAAAAATGAGA+GGG - chr1.3:72559531-72559550 MS.gene91342:intron 35.0%
TTCATCTTCTACATCTAGTC+GGG + chr1.3:72558947-72558966 None:intergenic 35.0%
TTGGCAATTGCAAAAATGAG+AGG - chr1.3:72559530-72559549 MS.gene91342:intron 35.0%
TTTGCACAGAAACAACAACA+AGG - chr1.3:72558600-72558619 MS.gene91342:CDS 35.0%
! AGAAAGCATGAAATGGATTC+TGG + chr1.3:72562036-72562055 None:intergenic 35.0%
! GAAAGCATGAAATGGATTCT+GGG + chr1.3:72562035-72562054 None:intergenic 35.0%
! TAGTGAAGTGCTTAATCTGA+TGG - chr1.3:72560604-72560623 MS.gene91342:intron 35.0%
! TTTTGAGCCATCATCTATGA+TGG - chr1.3:72562130-72562149 MS.gene91342:intron 35.0%
!! ATGAAATGGATTCTGGGATA+TGG + chr1.3:72562029-72562048 None:intergenic 35.0%
!! TAAAGAAGATGATGGAGGTA+TGG - chr1.3:72560436-72560455 MS.gene91342:intron 35.0%
!! TGAAATGGATTCTGGGATAT+GGG + chr1.3:72562028-72562047 None:intergenic 35.0%
AAACCTCAAAGAAGCAGTCA+AGG + chr1.3:72561958-72561977 None:intergenic 40.0%
AATTTCATCGAGCTGTGGTA+TGG - chr1.3:72559468-72559487 MS.gene91342:intron 40.0%
ACAACGTGGCGCATTATTAT+TGG - chr1.3:72560712-72560731 MS.gene91342:intron 40.0%
AGAAACAAGACGGTTAAGGT+TGG + chr1.3:72561803-72561822 None:intergenic 40.0%
AGAGATCGTTGATCTGTGTT+TGG - chr1.3:72561462-72561481 MS.gene91342:intron 40.0%
AGATCTACAAAAACAGCACG+GGG + chr1.3:72561220-72561239 None:intergenic 40.0%
AGTGAAACCCGAAATTAGAC+CGG - chr1.3:72560204-72560223 MS.gene91342:intron 40.0%
ATACCACACTTGAAACCAGT+AGG + chr1.3:72562290-72562309 None:intergenic 40.0%
ATAGACAGTAAACCCAAGCT+TGG + chr1.3:72561623-72561642 None:intergenic 40.0%
CAAAATCGGTATAAATCGCC+CGG + chr1.3:72560226-72560245 None:intergenic 40.0%
CAACGTGGCGCATTATTATT+GGG - chr1.3:72560713-72560732 MS.gene91342:intron 40.0%
CACTTAGCCATCATAGATGA+TGG + chr1.3:72562140-72562159 None:intergenic 40.0%
CATACTGGTATAATGACCAC+GGG + chr1.3:72561344-72561363 None:intergenic 40.0%
CATGACATCATTCAACAACG+TGG - chr1.3:72560698-72560717 MS.gene91342:intron 40.0%
CCAACAAAATGGAGCTTACT+AGG - chr1.3:72559214-72559233 MS.gene91342:intron 40.0%
GAGTGCATTTCAGTTCACAT+TGG - chr1.3:72557491-72557510 MS.gene91342:CDS 40.0%
GCATTTGTTCACTGGTATGT+GGG - chr1.3:72562452-72562471 MS.gene91342:intron 40.0%
GGAAAAACTGATGATCGTTC+AGG + chr1.3:72559316-72559335 None:intergenic 40.0%
GTACATATTGAGCAGGTACA+CGG - chr1.3:72560650-72560669 MS.gene91342:intron 40.0%
GTTGTGAGTTAGAGACATAC+TGG + chr1.3:72561359-72561378 None:intergenic 40.0%
TAAATCGCCCGGTCTAATTT+CGG + chr1.3:72560215-72560234 None:intergenic 40.0%
TACCACACTTGAAACCAGTA+GGG + chr1.3:72562289-72562308 None:intergenic 40.0%
TAGCTACCTGAGAAACAAGA+CGG + chr1.3:72561813-72561832 None:intergenic 40.0%
TCCAGTTATATCTGCTGAGA+AGG - chr1.3:72562064-72562083 MS.gene91342:intron 40.0%
TCGCTACAATCAAAACCAAG+AGG - chr1.3:72562240-72562259 MS.gene91342:intron 40.0%
TGCATTTGTTCACTGGTATG+TGG - chr1.3:72562451-72562470 MS.gene91342:intron 40.0%
TGTGCAAGATTGCACAGTTA+AGG - chr1.3:72559088-72559107 MS.gene91342:intron 40.0%
TTAACTGTGCAATCTTGCAC+AGG + chr1.3:72559089-72559108 None:intergenic 40.0%
TTCGGTGAAGTCGTTTGAAA+GGG - chr1.3:72558174-72558193 MS.gene91342:intron 40.0%
TTCTTATATGCACAGCCTGA+TGG - chr1.3:72561109-72561128 MS.gene91342:intron 40.0%
TTGCTTCATATGTTCCACCA+TGG - chr1.3:72558256-72558275 MS.gene91342:intron 40.0%
! CCTAGTAAGCTCCATTTTGT+TGG + chr1.3:72559217-72559236 None:intergenic 40.0%
!! ACTGCTTCTTTGAGGTTTGA+TGG - chr1.3:72561960-72561979 MS.gene91342:intron 40.0%
!! CATGTGTGTTGACTGTTGTA+TGG + chr1.3:72560682-72560701 None:intergenic 40.0%
!! TTGGTTTTCAATGCTGTTGG+AGG - chr1.3:72561532-72561551 MS.gene91342:intron 40.0%
AAACTCAACAAGTGTGGCTG+AGG - chr1.3:72562382-72562401 MS.gene91342:intron 45.0%
AAATCGCCCGGTCTAATTTC+GGG + chr1.3:72560214-72560233 None:intergenic 45.0%
AACATCAGTGTGCTCCAAGA+GGG + chr1.3:72561707-72561726 None:intergenic 45.0%
AAGGGTTAAAATGACCCGGT+TGG + chr1.3:72560176-72560195 None:intergenic 45.0%
ACAGCAGCATTCACATCCTT+GGG + chr1.3:72562221-72562240 None:intergenic 45.0%
AGCAAGCCATGTACTTTCCA+TGG + chr1.3:72562172-72562191 None:intergenic 45.0%
AGCAGGTGTTAACAAAGCGT+TGG + chr1.3:72558705-72558724 None:intergenic 45.0%
AGCATTTCCGACCTGAATAC+CGG + chr1.3:72557522-72557541 None:intergenic 45.0%
AGTGATGACACGTCAGATGT+TGG - chr1.3:72558211-72558230 MS.gene91342:intron 45.0%
ATCGAGCTGTGGTATGGTAA+GGG - chr1.3:72559474-72559493 MS.gene91342:intron 45.0%
CAAGAGGACCATTCAGTTTG+TGG - chr1.3:72562256-72562275 MS.gene91342:intron 45.0%
CACAAACTGAATGGTCCTCT+TGG + chr1.3:72562258-72562277 None:intergenic 45.0%
CATCCTTGACTGCTTCTTTG+AGG - chr1.3:72561952-72561971 MS.gene91342:intron 45.0%
CCTGAGAAACAAGACGGTTA+AGG + chr1.3:72561807-72561826 None:intergenic 45.0%
CTCACCTCATCGATAACAGT+GGG + chr1.3:72561247-72561266 None:intergenic 45.0%
CTTCGGTGAAGTCGTTTGAA+AGG - chr1.3:72558173-72558192 MS.gene91342:intron 45.0%
GACTGAATTCCAGACCAACT+TGG - chr1.3:72562001-72562020 MS.gene91342:intron 45.0%
GAGCTTTACTGTCTCGAACA+CGG - chr1.3:72557548-72557567 MS.gene91342:CDS 45.0%
GATCTACAAAAACAGCACGG+GGG + chr1.3:72561219-72561238 None:intergenic 45.0%
GATTGCACATCAGTGTGATC+TGG - chr1.3:72559503-72559522 MS.gene91342:intron 45.0%
GCACCAATCCACAAACTGAA+TGG + chr1.3:72562267-72562286 None:intergenic 45.0%
GCCTTCTCAGCAGATATAAC+TGG + chr1.3:72562068-72562087 None:intergenic 45.0%
GGACCATTCAGTTTGTGGAT+TGG - chr1.3:72562261-72562280 MS.gene91342:intron 45.0%
GGAGCTTCTATGAAGAAGTC+AGG - chr1.3:72558141-72558160 MS.gene91342:intron 45.0%
GTGAAACCCGAAATTAGACC+GGG - chr1.3:72560205-72560224 MS.gene91342:intron 45.0%
GTGATGACACGTCAGATGTT+GGG - chr1.3:72558212-72558231 MS.gene91342:intron 45.0%
GTTGTATGGCTCAACAACAG+AGG + chr1.3:72561665-72561684 None:intergenic 45.0%
TATCCGCAAGCTTTCTGATG+CGG + chr1.3:72561489-72561508 None:intergenic 45.0%
TCAGTTCACATTGGTCAAGC+CGG - chr1.3:72557500-72557519 MS.gene91342:CDS 45.0%
TGACCTTGCTAAGGTACAGA+GGG - chr1.3:72562343-72562362 MS.gene91342:intron 45.0%
TGATGATCGTTCAGGGGAAA+GGG + chr1.3:72559308-72559327 None:intergenic 45.0%
! ATAACTGCACTGGTCTCCAA+GGG - chr1.3:72561506-72561525 MS.gene91342:intron 45.0%
! ATCAGTGTGATCTGGTTCGT+TGG - chr1.3:72559511-72559530 MS.gene91342:intron 45.0%
! CACTGATGTTGCTGTTCTTC+TGG - chr1.3:72561717-72561736 MS.gene91342:intron 45.0%
! GAGCGTCTGTCTGTTGATTA+TGG - chr1.3:72561589-72561608 MS.gene91342:intron 45.0%
! GGGTTTCACTGGTCTGAAAA+GGG + chr1.3:72560194-72560213 None:intergenic 45.0%
! GTTTTCAATGCTGTTGGAGG+AGG - chr1.3:72561535-72561554 MS.gene91342:intron 45.0%
!! ACGGTTAAGGTTGGTGTAAG+TGG + chr1.3:72561794-72561813 None:intergenic 45.0%
!! AGATGATGGAGGTATGGAGA+TGG - chr1.3:72560442-72560461 MS.gene91342:intron 45.0%
!! CCTTAACCGTCTTGTTTCTC+AGG - chr1.3:72561804-72561823 MS.gene91342:intron 45.0%
!! CGGTTAAGGTTGGTGTAAGT+GGG + chr1.3:72561793-72561812 None:intergenic 45.0%
!! GGATCTTGCTGCTTTGGAAA+AGG - chr1.3:72562514-72562533 MS.gene91342:CDS 45.0%
!! GGTCTAATTTCGGGTTTCAC+TGG + chr1.3:72560205-72560224 None:intergenic 45.0%
!! TGATGGCTCAAAAGCACTGT+TGG + chr1.3:72562123-72562142 None:intergenic 45.0%
!!! AGAATTTTCTGAAGCCCGTG+AGG - chr1.3:72562493-72562512 MS.gene91342:intron 45.0%
!!! TTTCTGGTTTTGGGTCGCAT+GGG - chr1.3:72558901-72558920 MS.gene91342:CDS 45.0%
!!! TTTTCTGGTTTTGGGTCGCA+TGG - chr1.3:72558900-72558919 MS.gene91342:CDS 45.0%
!! AAATAATTAAGAAATAATAA+TGG - chr1.3:72559690-72559709 MS.gene91342:intron 5.0%
!!! AAATTGTTTTAAATTAAAAT+TGG - chr1.3:72560269-72560288 MS.gene91342:intron 5.0%
!!! ATGAAATATTTTTTATAAAA+AGG - chr1.3:72560507-72560526 MS.gene91342:intron 5.0%
!!! ATTTCATTTTTTTAATTTTT+TGG + chr1.3:72558551-72558570 None:intergenic 5.0%
!!! ATTTCTTAATTATTTTATTA+TGG + chr1.3:72559685-72559704 None:intergenic 5.0%
!!! TTTCTTAATTATTTTATTAT+GGG + chr1.3:72559684-72559703 None:intergenic 5.0%
AACACCTTCTTCAGCGAGAC+TGG - chr1.3:72561178-72561197 MS.gene91342:intron 50.0%
AACAGAGGTGGAAACCTGAG+GGG + chr1.3:72561650-72561669 None:intergenic 50.0%
AAGCTTGCGGATAACTGCAC+TGG - chr1.3:72561496-72561515 MS.gene91342:intron 50.0%
AATGCTGTTGGAGGAGGAAC+TGG - chr1.3:72561541-72561560 MS.gene91342:intron 50.0%
ACAACAGAGGTGGAAACCTG+AGG + chr1.3:72561652-72561671 None:intergenic 50.0%
AGAGTGTGACACGACACAGA+TGG - chr1.3:72559018-72559037 MS.gene91342:intron 50.0%
AGTCGTCTTCAACCTCCAAC+CGG - chr1.3:72560158-72560177 MS.gene91342:intron 50.0%
AGTGACAAGACTGTTGGAGG+CGG - chr1.3:72561142-72561161 MS.gene91342:intron 50.0%
ATGACCACGGGCAAAGTTGT+TGG + chr1.3:72561332-72561351 None:intergenic 50.0%
ATGCCGAGTGACAAGACTGT+TGG - chr1.3:72561136-72561155 MS.gene91342:intron 50.0%
CAAAGCAGCAAGATCCTCAC+GGG + chr1.3:72562510-72562529 None:intergenic 50.0%
CAACAGAGGTGGAAACCTGA+GGG + chr1.3:72561651-72561670 None:intergenic 50.0%
CAACATCAGTGTGCTCCAAG+AGG + chr1.3:72561708-72561727 None:intergenic 50.0%
CATCGAGCTGTGGTATGGTA+AGG - chr1.3:72559473-72559492 MS.gene91342:intron 50.0%
CATTGGTCAAGCCGGTATTC+AGG - chr1.3:72557508-72557527 MS.gene91342:CDS 50.0%
CCAAAGCAGCAAGATCCTCA+CGG + chr1.3:72562511-72562530 None:intergenic 50.0%
CCAAGCGTGCATTTGTTCAC+TGG - chr1.3:72562444-72562463 MS.gene91342:intron 50.0%
CCACTGTTATCGATGAGGTG+AGG - chr1.3:72561245-72561264 MS.gene91342:intron 50.0%
CCAGTGAACAAATGCACGCT+TGG + chr1.3:72562447-72562466 None:intergenic 50.0%
CCATGTACTTTCCATGGCGA+GGG + chr1.3:72562166-72562185 None:intergenic 50.0%
CCTCACCTCATCGATAACAG+TGG + chr1.3:72561248-72561267 None:intergenic 50.0%
CCTTGGGAACAACATCACCT+CGG + chr1.3:72562205-72562224 None:intergenic 50.0%
CTGATGATCGTTCAGGGGAA+AGG + chr1.3:72559309-72559328 None:intergenic 50.0%
GACAGCAGCATTCACATCCT+TGG + chr1.3:72562222-72562241 None:intergenic 50.0%
GCTGTGCAACAATCTTGCAC+AGG - chr1.3:72559649-72559668 MS.gene91342:intron 50.0%
GGTTAAAATGACCCGGTTGG+AGG + chr1.3:72560173-72560192 None:intergenic 50.0%
GTATGGCTCAACAACAGAGG+TGG + chr1.3:72561662-72561681 None:intergenic 50.0%
GTGACCTTGCTAAGGTACAG+AGG - chr1.3:72562342-72562361 MS.gene91342:intron 50.0%
GTGGAGAGGACACTGTTGTA+TGG + chr1.3:72561679-72561698 None:intergenic 50.0%
GTTATCGATGAGGTGAGGAC+TGG - chr1.3:72561250-72561269 MS.gene91342:intron 50.0%
GTTCACTGGTATGTGGGTGA+GGG - chr1.3:72562458-72562477 MS.gene91342:intron 50.0%
TACTGTCTCGAACACGGCAT+CGG - chr1.3:72557554-72557573 MS.gene91342:CDS 50.0%
TCACCACCAGGAACAACAGT+AGG + chr1.3:72562326-72562345 None:intergenic 50.0%
TCAGGTCGGAAATGCTTGCT+GGG - chr1.3:72557526-72557545 MS.gene91342:CDS 50.0%
TGAGCCCACTGTTATCGATG+AGG - chr1.3:72561240-72561259 MS.gene91342:intron 50.0%
TGAGGGCGGTGATGAAGATA+TGG - chr1.3:72562565-72562584 MS.gene91342:CDS 50.0%
TGTTCACTGGTATGTGGGTG+AGG - chr1.3:72562457-72562476 MS.gene91342:intron 50.0%
TTCAGGTCGGAAATGCTTGC+TGG - chr1.3:72557525-72557544 MS.gene91342:CDS 50.0%
! ACAAGTGTGGCTGAGGTGTT+TGG - chr1.3:72562389-72562408 MS.gene91342:intron 50.0%
! CAGTCTTGTCACTCGGCATT+TGG + chr1.3:72561135-72561154 None:intergenic 50.0%
! CCTCCAACAGTCTTGTCACT+CGG + chr1.3:72561142-72561161 None:intergenic 50.0%
! CGGGTTTCACTGGTCTGAAA+AGG + chr1.3:72560195-72560214 None:intergenic 50.0%
! GATAACTGCACTGGTCTCCA+AGG - chr1.3:72561505-72561524 MS.gene91342:intron 50.0%
! TCTGGGATATGGGACCAAGT+TGG + chr1.3:72562018-72562037 None:intergenic 50.0%
!! CACTGGTCTCCAAGGGTTTT+TGG - chr1.3:72561513-72561532 MS.gene91342:intron 50.0%
!! GATATGGGACCAAGTTGGTC+TGG + chr1.3:72562013-72562032 None:intergenic 50.0%
!! GCTTGCTGTTTGATGTACCG+AGG - chr1.3:72562185-72562204 MS.gene91342:intron 50.0%
!! TGCCCTACTGGTTTCAAGTG+TGG - chr1.3:72562284-72562303 MS.gene91342:intron 50.0%
!! TGGGTCGCATGGGTTTTAAC+TGG - chr1.3:72558911-72558930 MS.gene91342:CDS 50.0%
!! TTTGTGGATTGGTGCCCTAC+TGG - chr1.3:72562272-72562291 MS.gene91342:intron 50.0%
!!! GGGTCGCATGGGTTTTAACT+GGG - chr1.3:72558912-72558931 MS.gene91342:CDS 50.0%
ACCACGGGCAAAGTTGTTGG+CGG + chr1.3:72561329-72561348 None:intergenic 55.0%
ACCTTAGCAAGGTCACCACC+AGG + chr1.3:72562338-72562357 None:intergenic 55.0%
AGCACCAGTCTCGCTGAAGA+AGG + chr1.3:72561185-72561204 None:intergenic 55.0%
AGGATGGAAGAGCTGGCGAT+AGG + chr1.3:72561278-72561297 None:intergenic 55.0%
AGTGTGCTCCAAGAGGGAGT+GGG + chr1.3:72561701-72561720 None:intergenic 55.0%
CACTGATGAGCTGCTCAGGA+TGG + chr1.3:72561294-72561313 None:intergenic 55.0%
CAGCCACCTACTGTTGTTCC+TGG - chr1.3:72562317-72562336 MS.gene91342:intron 55.0%
CATCCTGAGCAGCTCATCAG+TGG - chr1.3:72561292-72561311 MS.gene91342:intron 55.0%
CCACCAGGAACAACAGTAGG+TGG + chr1.3:72562323-72562342 None:intergenic 55.0%
CCACCTACTGTTGTTCCTGG+TGG - chr1.3:72562320-72562339 MS.gene91342:intron 55.0%
CCGAGGTGATGTTGTTCCCA+AGG - chr1.3:72562202-72562221 MS.gene91342:intron 55.0%
CCGAGTGACAAGACTGTTGG+AGG - chr1.3:72561139-72561158 MS.gene91342:intron 55.0%
CTGCCCTCTGTACCTTAGCA+AGG + chr1.3:72562349-72562368 None:intergenic 55.0%
CTGGTATGTGGGTGAGGGTA+TGG - chr1.3:72562463-72562482 MS.gene91342:intron 55.0%
GCCATGTACTTTCCATGGCG+AGG + chr1.3:72562167-72562186 None:intergenic 55.0%
GGACCGCATCAGAAAGCTTG+CGG - chr1.3:72561483-72561502 MS.gene91342:intron 55.0%
GGTCAAGCCGGTATTCAGGT+CGG - chr1.3:72557512-72557531 MS.gene91342:CDS 55.0%
GTCGTCTTCAACCTCCAACC+GGG - chr1.3:72560159-72560178 MS.gene91342:intron 55.0%
TACTGTCTATCCCTCCCCTC+AGG - chr1.3:72561633-72561652 MS.gene91342:intron 55.0%
TCACTCGGCATTTGGCCATC+AGG + chr1.3:72561127-72561146 None:intergenic 55.0%
TTCTTCAGCGAGACTGGTGC+TGG - chr1.3:72561184-72561203 MS.gene91342:intron 55.0%
TTGCCACTGATGAGCTGCTC+AGG + chr1.3:72561298-72561317 None:intergenic 55.0%
! CCCTCGCCATGGAAAGTACA+TGG - chr1.3:72562163-72562182 MS.gene91342:intron 55.0%
! CCGTGAGGATCTTGCTGCTT+TGG - chr1.3:72562508-72562527 MS.gene91342:CDS 55.0%
! GTGGGTGAGGGTATGGAAGA+AGG - chr1.3:72562470-72562489 MS.gene91342:intron 55.0%
! GTTGGAGGAGGAACTGGTTC+TGG - chr1.3:72561547-72561566 MS.gene91342:intron 55.0%
! TCCTGGTGGTGACCTTGCTA+AGG - chr1.3:72562334-72562353 MS.gene91342:intron 55.0%
!! GAAGAAGTTGGTGCCGAGTC+TGG - chr1.3:72562542-72562561 MS.gene91342:CDS 55.0%
!! GGAGGAACTGGTTCTGGTCT+TGG - chr1.3:72561553-72561572 MS.gene91342:intron 55.0%
AGAGGTGGAAACCTGAGGGG+AGG + chr1.3:72561647-72561666 None:intergenic 60.0%
ATCACCGCCCTCACCAGACT+CGG + chr1.3:72562558-72562577 None:intergenic 60.0%
CAGTGTGCTCCAAGAGGGAG+TGG + chr1.3:72561702-72561721 None:intergenic 60.0%
GAGGTGGAAACCTGAGGGGA+GGG + chr1.3:72561646-72561665 None:intergenic 60.0%
GCTAAGTGTGACCCTCGCCA+TGG - chr1.3:72562152-72562171 MS.gene91342:intron 60.0%
GCTGCTCAGGATGGAAGAGC+TGG + chr1.3:72561285-72561304 None:intergenic 60.0%
!! AGTTGGTGCCGAGTCTGGTG+AGG - chr1.3:72562547-72562566 MS.gene91342:CDS 60.0%
!! GTTGGTGCCGAGTCTGGTGA+GGG - chr1.3:72562548-72562567 MS.gene91342:CDS 60.0%
CCAAGAGGGAGTGGGTGGAG+AGG + chr1.3:72561693-72561712 None:intergenic 65.0%
CCTCTCCACCCACTCCCTCT+TGG - chr1.3:72561690-72561709 MS.gene91342:intron 65.0%
GCCGCCAACAACTTTGCCCG+TGG - chr1.3:72561325-72561344 MS.gene91342:intron 65.0%
GTGCTCCAAGAGGGAGTGGG+TGG + chr1.3:72561698-72561717 None:intergenic 65.0%
! GGTGCCGAGTCTGGTGAGGG+CGG - chr1.3:72562551-72562570 MS.gene91342:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72557485 72562598 72557485 ID=MS.gene91342
chr1.3 mRNA 72557485 72562598 72557485 ID=MS.gene91342.t1;Parent=MS.gene91342
chr1.3 exon 72562506 72562598 72562506 ID=MS.gene91342.t1.exon1;Parent=MS.gene91342.t1
chr1.3 CDS 72562506 72562598 72562506 ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1
chr1.3 exon 72558725 72558959 72558725 ID=MS.gene91342.t1.exon2;Parent=MS.gene91342.t1
chr1.3 CDS 72558725 72558959 72558725 ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1
chr1.3 exon 72558258 72558628 72558258 ID=MS.gene91342.t1.exon3;Parent=MS.gene91342.t1
chr1.3 CDS 72558258 72558628 72558258 ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1
chr1.3 exon 72557485 72558138 72557485 ID=MS.gene91342.t1.exon4;Parent=MS.gene91342.t1
chr1.3 CDS 72557485 72558138 72557485 ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1
Gene Sequence

>MS.gene91342

ATGAGAGAGTGCATTTCAGTTCACATTGGTCAAGCCGGTATTCAGGTCGGAAATGCTTGCTGGGAGCTTTACTGTCTCGAACACGGCATCGGCGTAAGTCTTCGTTCTTAGCTTTTTTTATCCATTCCATTTTCGTTCAGATTTGTTATATGCGTTTCTCTAGGTTTTTTTTTTCAGCATTTTCTTTGTTCATTTTTGTTCCTATTTTTCAGATCTAAGGAAATTATACCGTTGTTTTTTCAATTTTATCTGTTTTCGCTGAATTTTTCCTGTATTGTTTCTAAATTTGATTTTCCATGTTAAATTAATCGGATCTGCTTTATTTTATTATCTAATTAATTGATTCGTTTATAGATCTGTAATATTTGTGAAATCGCTGGTGTGTATGTTATATATGTTCGTAAATTTATTAGATCCGTTTGTTATTAGGTTATGTAAATGTCAATTAACGTGTTATCTCTGAATTCTTGTTTGAATCTTGCGGTAATTGTTATAAACTAAGCTTTATAATTCAAATAAATTTGATGTTATGCTTAAATCTGTTTAAGCATATGAAAATTTGATAATGTGTGCATAAATCTATATATTAAAATCTGTTTATGAGTTAATATATGGTTTCTTTGTTTGCTAATTATAAATGAAAGCTTAATTTCAAGGGAGCTTCTATGAAGAAGTCAGGAGAATGATTCTTCGGTGAAGTCGTTTGAAAGGGCCAATCAGATTTTAAGTGATGACACGTCAGATGTTGGGACAAATTCTAATATGGATCACTTGCTTCATATGTTCCACCATGGACATGTTTATTTCATGATCTTAACGGTTAGATTTATTTAATCTCTATGTTATTGTGGTACACACTCTCCACATGATTTTTTTTTATAATTCCAATTCTCTCTCCACTTTATCACTTTTTCATCTCTCTCATATTTCTTTCTCTTTCTTTATTTATCTATATTCTCTCTCTTCCAGATTTTTTATCAAATCACTATGTCACTCTTCAACATCTTCATCATACATTCATCATCTTCATCATATCTTCATCATCTTCATGAGAGAAAAAAATCCAAAAAATTAAAAAAATGAAATTACATAATTAAAAAAGAAACGTAATTACATTTGCACAGAAACAACAACAAGGACATAAAAATATTCACATAAACAACAACAACGAGACTCATTTCATCCAACCACACATGAATTCTTTTTCTTCTTAGATACCAACGCTTTGTTAACACCTGCTTAGCAAATTCGTTTTTATCTAATTTCGGGTATTTTTTGTTGAAATTAGATTTATTTATTTCAATTTGAGTTATTAAAGTTGCAAAACATTGCTTGAAATCGCAGAAAATGTTATTTTTGTTCATGATTATGTATTTAAAATGAGTTTTTGATGTTAAAATGACTTAAAGTTATGCTTTTCTGGTTTTGGGTCGCATGGGTTTTAACTGGGTCGTTATGACCCGACTAGATGTAGAAGATGAAGTATTGAAAAAAATGAATAGCAGTAAAATAGAGAGGTGTTTTCTCTTTTCAAGAGTGTGACACGACACAGATGGAGAGATTAAGAATTAAAAAAATAAATAATAAAAGGAGATTTCTAACCTGTGCAAGATTGCACAGTTAAGGAGTAATAAATGCATGATTTTTTAAGTTTTTTAAGTCCTATTAATGAATCAATTGACTGGCTTTTTTTTAAAACCCGTATTTTTCTCTCTCATATTAACATTTGCCAACAAAATGGAGCTTACTAGGAACAAACCAGACCTTCAGTTTTAATCTAAAGCTAATTTCAATTAATTACCCCATGAATTATGATTCATCCCTTTCCCCTGAACGATCATCAGTTTTTCCTTTTCCACTAAACAAAAATCCATGTCAAGGATTATCTCTCTAATTTACAATATTTTGTTTCATTTACAAAAATCCATGTCAAGGATAATGTATTGATTGATGGGAACAACATGAATCAATGATTAAAATTGAAATTTCATCGAGCTGTGGTATGGTAAGGGTACTGCGATTGCACATCAGTGTGATCTGGTTCGTTGGCAATTGCAAAAATGAGAGGGCCCTTAACGAGAAAAAAACAGTTTCAAAAATCCCAAAAAATACTCATTAATAGACTTTTAAAAAACCCAAAAATTAGGCATTTATTACTCTTTAAGCTGTGCAACAATCTTGCACAGGTTAGAAAAACCCATAATAAAATAATTAAGAAATAATAATGGAAATATTACTATTAATAGCGAAATTGTTAACATTAATTATAGGTGGCGTAAATTAATTTTTTTTTACCGTAAATCTCTACCAACTGTATTAATAACACACATTAAACAAAAAATATTGTTAAACAAACAAATTAATTTGCATTTTGTTGACATTAATTATAGGATTTTTTTTAATTTGCATTAATTTGCATTGTGTTGACTATTAATTTGCAAAAAAAAATTGTTAAGCAAAAAAAAATTGCATTCGTATATACCAGCCTCATTTAACAAAAAAATGATTTTTTTTTGTTAAGAAAAAAAACAAAGATTAAAAATTCATCGAATTCTCCGTATATTATTGTTGAATCTGCCGAGATGTTTAACAACTTAATATATAATAATTTAGACTAATAGTACGTAATATAGTTTACTAGTGTGTATAACAAATACAATTAAAAAATAATGAAGTCGTCTTCAACCTCCAACCGGGTCATTTTAACCCTTTTCAGACCAGTGAAACCCGAAATTAGACCGGGCGATTTATACCGATTTTGAACGACGATAAAGATGATTATATAAATTGTTTTAAATTAAAATTGGAAAAATGGATTGGGTTAAACAAACGAGTTGAATTTAAATTAGGGTAATTGACTTTTGTGTTGAGAAGAAAATGGAGATGAAGAAAATATTGAGATTCATGTTATTTGGAGATGTATTTGAGTAGCTATTTCGTATTTTGTTTAATAAAGAAGATGATGGAGGTATGGAGATGGTGTTGATGTTCATAATCTTTCTGGGTTTATTTATTTTTAATAATGAAATATTTTTTATAAAAAGGATTATCATAAAAAAGGTTTATATTCAAAAAGGAGAAAAGAAATAAATATAGTGCGAAACGCAACACAATAACACTAGTGAAGTGCTTAATCTGATGGTTCAAAAAAGCTAGTCTAAAGTGGTACATATTGAGCAGGTACACGGTATATACCATACAACAGTCAACACACATGACATCATTCAACAACGTGGCGCATTATTATTGGGTGTAGTGTAACTTCACCGAAAAAGTCAATTGAACGACTTCACCATAGAATTTTCCTAATTTCAAATCATAGTGTTGTTTTGTTATGTTATCTTGGAAAATTTTGATACTGTGCTTAGCATATATATTGCTAATAAATATGTTATCTATGTTCGTGGATTTATTAGATCCGTATGTTATTAGGTTATGTAAATGTCAATAAATATGCCACTTCTCAATTGTTGATTGTTGTTTGAAACTTGCGCTAATTGTTATACACTAAGCTTTACCATTCAATTAAAGTTTGATACTATGGTTATATCTGTTTAAGTATATGAAAACTTGATGATGTGTGCTTTAATCTGTATATAATTATTTCAAGAGCTCATATATGGTTTCTTATATGCACAGCCTGATGGCCAAATGCCGAGTGACAAGACTGTTGGAGGCGGTGATGACGCTTTCAACACCTTCTTCAGCGAGACTGGTGCTGGAAAGCATGTCCCCCGTGCTGTTTTTGTAGATCTTGAGCCCACTGTTATCGATGAGGTGAGGACTGGAACCTATCGCCAGCTCTTCCATCCTGAGCAGCTCATCAGTGGCAAAGAAGATGCCGCCAACAACTTTGCCCGTGGTCATTATACCAGTATGTCTCTAACTCACAACTCCACATTATAACTCATTTGTGATTAGTGTTATGATTATGATCTAATATTATGTATGTAATTTGTGTCATTTTCAGTTGGGAAAGAGATCGTTGATCTGTGTTTGGACCGCATCAGAAAGCTTGCGGATAACTGCACTGGTCTCCAAGGGTTTTTGGTTTTCAATGCTGTTGGAGGAGGAACTGGTTCTGGTCTTGGTTCTCTGCTGCTTGAGCGTCTGTCTGTTGATTATGGAAAGAAATCCAAGCTTGGGTTTACTGTCTATCCCTCCCCTCAGGTTTCCACCTCTGTTGTTGAGCCATACAACAGTGTCCTCTCCACCCACTCCCTCTTGGAGCACACTGATGTTGCTGTTCTTCTGGACAATGAAGCTATCTATGACATCTGTAGGCGCTCCCTCGACATTGAGCGTCCCACTTACACCAACCTTAACCGTCTTGTTTCTCAGGTAGCTATAGTTTTCGTCAAATCAATACAATTCTGATTGTGAATTGCGGTGATCGTGTACAATTACTTGTTTTGATGTAGTGAATGTTGAGTTAAAACTTTGTTTTTGATTGTTTTCAGGTGATTTCATCCTTGACTGCTTCTTTGAGGTTTGATGGTGCTCTCAATGTTGATGTGACTGAATTCCAGACCAACTTGGTCCCATATCCCAGAATCCATTTCATGCTTTCTTCATATGCTCCAGTTATATCTGCTGAGAAGGCTTATCACGAGCAGCTTTCAGTTGCTGAAATTACCAACAGTGCTTTTGAGCCATCATCTATGATGGCTAAGTGTGACCCTCGCCATGGAAAGTACATGGCTTGCTGTTTGATGTACCGAGGTGATGTTGTTCCCAAGGATGTGAATGCTGCTGTCGCTACAATCAAAACCAAGAGGACCATTCAGTTTGTGGATTGGTGCCCTACTGGTTTCAAGTGTGGTATTAACTATCAGCCACCTACTGTTGTTCCTGGTGGTGACCTTGCTAAGGTACAGAGGGCAGTTTGCATGATTTCAAACTCAACAAGTGTGGCTGAGGTGTTTGGTCGCATTGATCACAAGTTTGATCTGATGTATGCCAAGCGTGCATTTGTTCACTGGTATGTGGGTGAGGGTATGGAAGAAGGAGAATTTTCTGAAGCCCGTGAGGATCTTGCTGCTTTGGAAAAGGATTATGAAGAAGTTGGTGCCGAGTCTGGTGAGGGCGGTGATGAAGATATGGATGACTACTAG

Protein sequence

>MS.gene91342.t1

MRECISVHIGQAGIQVGNACWELYCLEHGIGPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFGRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGEGGDEDMDDY