Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91342.t1 | XP_013469959.1 | 99.8 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 2.40E-263 | 917.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91342.t1 | P33629 | 98.0 | 450 | 9 | 0 | 1 | 450 | 1 | 450 | 1.6e-260 | 899.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91342.t1 | A0A072VQC8 | 99.8 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 1.7e-263 | 917.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049488 | MS.gene91342 | -0.810233 | 1.28E-50 | -1.69E-46 |
MS.gene050060 | MS.gene91342 | -0.860588 | 1.86E-63 | -1.69E-46 |
MS.gene050426 | MS.gene91342 | 0.828087 | 1.09E-54 | -1.69E-46 |
MS.gene050670 | MS.gene91342 | -0.814769 | 1.30E-51 | -1.69E-46 |
MS.gene050710 | MS.gene91342 | 0.803695 | 3.08E-49 | -1.69E-46 |
MS.gene052188 | MS.gene91342 | -0.81823 | 2.18E-52 | -1.69E-46 |
MS.gene052469 | MS.gene91342 | -0.83454 | 2.83E-56 | -1.69E-46 |
MS.gene054349 | MS.gene91342 | -0.802359 | 5.83E-49 | -1.69E-46 |
MS.gene055539 | MS.gene91342 | -0.846107 | 2.67E-59 | -1.69E-46 |
MS.gene056659 | MS.gene91342 | -0.80143 | 9.04E-49 | -1.69E-46 |
MS.gene057356 | MS.gene91342 | 0.811774 | 5.92E-51 | -1.69E-46 |
MS.gene059285 | MS.gene91342 | -0.80172 | 7.88E-49 | -1.69E-46 |
MS.gene059717 | MS.gene91342 | -0.856441 | 3.21E-62 | -1.69E-46 |
MS.gene059724 | MS.gene91342 | 0.804123 | 2.51E-49 | -1.69E-46 |
MS.gene060247 | MS.gene91342 | -0.811133 | 8.15E-51 | -1.69E-46 |
MS.gene060636 | MS.gene91342 | 0.807366 | 5.24E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91342.t1 | MTR_1g106005 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0.0 | 937 |
MS.gene91342.t1 | MTR_3g110720 | 97.773 | 449 | 10 | 0 | 1 | 449 | 1 | 449 | 0.0 | 914 |
MS.gene91342.t1 | MTR_4g097830 | 97.118 | 451 | 12 | 1 | 1 | 450 | 1 | 451 | 0.0 | 910 |
MS.gene91342.t1 | MTR_8g085980 | 92.644 | 435 | 32 | 0 | 1 | 435 | 1 | 435 | 0.0 | 832 |
MS.gene91342.t1 | MTR_7g085800 | 91.196 | 443 | 38 | 1 | 1 | 443 | 1 | 442 | 0.0 | 827 |
MS.gene91342.t1 | MTR_6g029190 | 83.149 | 451 | 72 | 2 | 1 | 450 | 1 | 448 | 0.0 | 776 |
MS.gene91342.t1 | MTR_2g041670 | 72.829 | 449 | 117 | 2 | 1 | 449 | 1 | 444 | 0.0 | 653 |
MS.gene91342.t1 | MTR_2g041400 | 74.359 | 429 | 105 | 2 | 1 | 429 | 1 | 424 | 0.0 | 640 |
MS.gene91342.t1 | MTR_4g094535 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 4.57e-124 | 368 |
MS.gene91342.t1 | MTR_7g089120 | 42.105 | 437 | 237 | 4 | 1 | 434 | 1 | 424 | 1.37e-123 | 367 |
MS.gene91342.t1 | MTR_4g017630 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 1.71e-123 | 367 |
MS.gene91342.t1 | MTR_3g113970 | 40.961 | 437 | 244 | 3 | 1 | 434 | 1 | 426 | 2.15e-123 | 366 |
MS.gene91342.t1 | MTR_4g019110 | 42.105 | 437 | 237 | 3 | 1 | 434 | 1 | 424 | 3.70e-123 | 366 |
MS.gene91342.t1 | MTR_4g019090 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 9.31e-123 | 365 |
MS.gene91342.t1 | MTR_8g107250 | 41.244 | 434 | 246 | 2 | 1 | 434 | 1 | 425 | 1.21e-122 | 364 |
MS.gene91342.t1 | MTR_1g101130 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 1.60e-122 | 364 |
MS.gene91342.t1 | MTR_2g031310 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.35e-122 | 363 |
MS.gene91342.t1 | MTR_8g098360 | 39.545 | 440 | 256 | 2 | 1 | 440 | 1 | 430 | 4.44e-121 | 360 |
MS.gene91342.t1 | MTR_3g063410 | 98.052 | 154 | 3 | 0 | 252 | 405 | 24 | 177 | 4.39e-111 | 325 |
MS.gene91342.t1 | MTR_3g063410 | 97.826 | 138 | 3 | 0 | 268 | 405 | 1 | 138 | 3.00e-97 | 289 |
MS.gene91342.t1 | MTR_7g117050 | 31.390 | 446 | 283 | 9 | 2 | 433 | 3 | 439 | 2.92e-76 | 246 |
MS.gene91342.t1 | MTR_6g075280 | 46.875 | 96 | 32 | 1 | 355 | 450 | 608 | 684 | 3.32e-16 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91342.t1 | AT1G04820 | 96.000 | 450 | 18 | 0 | 1 | 450 | 1 | 450 | 0.0 | 905 |
MS.gene91342.t1 | AT1G50010 | 96.000 | 450 | 18 | 0 | 1 | 450 | 1 | 450 | 0.0 | 905 |
MS.gene91342.t1 | AT4G14960 | 95.778 | 450 | 19 | 0 | 1 | 450 | 1 | 450 | 0.0 | 904 |
MS.gene91342.t1 | AT5G19780 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 838 |
MS.gene91342.t1 | AT5G19770 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 838 |
MS.gene91342.t1 | AT1G64740 | 90.115 | 435 | 43 | 0 | 1 | 435 | 1 | 435 | 0.0 | 812 |
MS.gene91342.t1 | AT4G14960 | 93.612 | 407 | 19 | 1 | 1 | 407 | 1 | 400 | 0.0 | 796 |
MS.gene91342.t1 | AT1G75780 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 2.27e-125 | 371 |
MS.gene91342.t1 | AT5G12250 | 41.648 | 437 | 239 | 4 | 1 | 434 | 1 | 424 | 7.54e-124 | 367 |
MS.gene91342.t1 | AT5G62700 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.59e-123 | 367 |
MS.gene91342.t1 | AT5G62690 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.59e-123 | 367 |
MS.gene91342.t1 | AT1G20010 | 41.014 | 434 | 247 | 2 | 1 | 434 | 1 | 425 | 5.73e-123 | 365 |
MS.gene91342.t1 | AT2G29550 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 9.34e-123 | 365 |
MS.gene91342.t1 | AT4G20890 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.45e-122 | 364 |
MS.gene91342.t1 | AT5G23860 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.00e-122 | 364 |
MS.gene91342.t1 | AT5G23860 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.00e-122 | 364 |
MS.gene91342.t1 | AT5G44340 | 41.244 | 434 | 245 | 3 | 1 | 434 | 1 | 424 | 1.75e-120 | 359 |
MS.gene91342.t1 | AT5G05620 | 32.063 | 446 | 280 | 9 | 2 | 433 | 3 | 439 | 1.74e-77 | 249 |
MS.gene91342.t1 | AT3G61650 | 31.614 | 446 | 282 | 9 | 2 | 433 | 3 | 439 | 3.74e-76 | 246 |
Find 138 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGATGTTGCTGTTCTTC+TGG | 0.208803 | 1.3:-72558344 | MS.gene91342:CDS |
AGAAAGCATGAAATGGATTC+TGG | 0.259381 | 1.3:+72558028 | None:intergenic |
ATGAAATGGATTCTGGGATA+TGG | 0.263566 | 1.3:+72558035 | None:intergenic |
GAGCGTCTGTCTGTTGATTA+TGG | 0.264658 | 1.3:-72558472 | MS.gene91342:CDS |
ACTGCTTCTTTGAGGTTTGA+TGG | 0.277274 | 1.3:-72558101 | MS.gene91342:CDS |
GGAGGAACTGGTTCTGGTCT+TGG | 0.278416 | 1.3:-72558508 | MS.gene91342:CDS |
CATCCTTGACTGCTTCTTTG+AGG | 0.310525 | 1.3:-72558109 | MS.gene91342:CDS |
CATTGGTCAAGCCGGTATTC+AGG | 0.339749 | 1.3:-72562553 | MS.gene91342:CDS |
CCTCTCCACCCACTCCCTCT+TGG | 0.347748 | 1.3:-72558371 | MS.gene91342:CDS |
GCCTTCTCAGCAGATATAAC+TGG | 0.348083 | 1.3:+72557996 | None:intergenic |
CAAGAGGACCATTCAGTTTG+TGG | 0.350369 | 1.3:-72557805 | MS.gene91342:CDS |
CAGCCACCTACTGTTGTTCC+TGG | 0.350820 | 1.3:-72557744 | MS.gene91342:CDS |
TTCAGGTCGGAAATGCTTGC+TGG | 0.378485 | 1.3:-72562536 | MS.gene91342:CDS |
GTTGGAGGAGGAACTGGTTC+TGG | 0.384483 | 1.3:-72558514 | MS.gene91342:CDS |
TTGCCACTGATGAGCTGCTC+AGG | 0.398345 | 1.3:+72558766 | None:intergenic |
AATGCTGTTGGAGGAGGAAC+TGG | 0.399457 | 1.3:-72558520 | MS.gene91342:CDS |
CAGTCTTGTCACTCGGCATT+TGG | 0.399542 | 1.3:+72558929 | None:intergenic |
CCGTGAGGATCTTGCTGCTT+TGG | 0.402547 | 1.3:-72557553 | MS.gene91342:CDS |
CTGGTATGTGGGTGAGGGTA+TGG | 0.404210 | 1.3:-72557598 | MS.gene91342:CDS |
CCTTAACCGTCTTGTTTCTC+AGG | 0.406634 | 1.3:-72558257 | MS.gene91342:intron |
TCACTCGGCATTTGGCCATC+AGG | 0.408719 | 1.3:+72558937 | None:intergenic |
GAAAAGGATTATGAAGAAGT+TGG | 0.409613 | 1.3:-72557531 | MS.gene91342:CDS |
TTTGTGGATTGGTGCCCTAC+TGG | 0.413566 | 1.3:-72557789 | MS.gene91342:CDS |
AGAGATCGTTGATCTGTGTT+TGG | 0.419543 | 1.3:-72558599 | MS.gene91342:CDS |
AACACCTTCTTCAGCGAGAC+TGG | 0.421898 | 1.3:-72558883 | MS.gene91342:CDS |
ATGGAAAGAAATCCAAGCTT+GGG | 0.425337 | 1.3:-72558453 | MS.gene91342:CDS |
ACAAGTGTGGCTGAGGTGTT+TGG | 0.429571 | 1.3:-72557672 | MS.gene91342:CDS |
TACTGTCTATCCCTCCCCTC+AGG | 0.434518 | 1.3:-72558428 | MS.gene91342:CDS |
ACGGTTAAGGTTGGTGTAAG+TGG | 0.452971 | 1.3:+72558270 | None:intergenic |
GGATCTTGCTGCTTTGGAAA+AGG | 0.453193 | 1.3:-72557547 | MS.gene91342:CDS |
GACAGCAGCATTCACATCCT+TGG | 0.453229 | 1.3:+72557842 | None:intergenic |
TGCATTTGTTCACTGGTATG+TGG | 0.454287 | 1.3:-72557610 | MS.gene91342:CDS |
TTCTTCAGCGAGACTGGTGC+TGG | 0.455019 | 1.3:-72558877 | MS.gene91342:CDS |
CATATGAAGAAAGCATGAAA+TGG | 0.460970 | 1.3:+72558021 | None:intergenic |
CACAAACTGAATGGTCCTCT+TGG | 0.463910 | 1.3:+72557806 | None:intergenic |
CCTGAGAAACAAGACGGTTA+AGG | 0.472342 | 1.3:+72558257 | None:intergenic |
CCAAGCGTGCATTTGTTCAC+TGG | 0.476016 | 1.3:-72557617 | MS.gene91342:CDS |
TGTTCACTGGTATGTGGGTG+AGG | 0.477980 | 1.3:-72557604 | MS.gene91342:CDS |
GAAGAAGTTGGTGCCGAGTC+TGG | 0.479857 | 1.3:-72557519 | MS.gene91342:CDS |
TGAAATGGATTCTGGGATAT+GGG | 0.482192 | 1.3:+72558036 | None:intergenic |
GAAAGCATGAAATGGATTCT+GGG | 0.486512 | 1.3:+72558029 | None:intergenic |
GTGGGTGAGGGTATGGAAGA+AGG | 0.492111 | 1.3:-72557591 | MS.gene91342:CDS |
ATGACCACGGGCAAAGTTGT+TGG | 0.493110 | 1.3:+72558732 | None:intergenic |
GATATGGGACCAAGTTGGTC+TGG | 0.495701 | 1.3:+72558051 | None:intergenic |
AGCATTTCCGACCTGAATAC+CGG | 0.501769 | 1.3:+72562542 | None:intergenic |
GGACCATTCAGTTTGTGGAT+TGG | 0.503034 | 1.3:-72557800 | MS.gene91342:CDS |
TATGGAAAGAAATCCAAGCT+TGG | 0.504088 | 1.3:-72558454 | MS.gene91342:CDS |
AAGCTATCTATGACATCTGT+AGG | 0.504342 | 1.3:-72558315 | MS.gene91342:CDS |
TCCTGGTGGTGACCTTGCTA+AGG | 0.511101 | 1.3:-72557727 | MS.gene91342:CDS |
TGAGGGCGGTGATGAAGATA+TGG | 0.511219 | 1.3:-72557496 | MS.gene91342:CDS |
CAGTGTGCTCCAAGAGGGAG+TGG | 0.513536 | 1.3:+72558362 | None:intergenic |
ACAGCAGCATTCACATCCTT+GGG | 0.514766 | 1.3:+72557843 | None:intergenic |
CCAGTGAACAAATGCACGCT+TGG | 0.525328 | 1.3:+72557617 | None:intergenic |
CACTTAGCCATCATAGATGA+TGG | 0.525506 | 1.3:+72557924 | None:intergenic |
CCGAGTGACAAGACTGTTGG+AGG | 0.526598 | 1.3:-72558922 | MS.gene91342:CDS |
CCCTCGCCATGGAAAGTACA+TGG | 0.526872 | 1.3:-72557898 | MS.gene91342:CDS |
TTCTTATATGCACAGCCTGA+TGG | 0.528986 | 1.3:-72558952 | MS.gene91342:intron |
AAACTCAACAAGTGTGGCTG+AGG | 0.529684 | 1.3:-72557679 | MS.gene91342:CDS |
TCAGTTCACATTGGTCAAGC+CGG | 0.536056 | 1.3:-72562561 | MS.gene91342:CDS |
GTGGAGAGGACACTGTTGTA+TGG | 0.536266 | 1.3:+72558385 | None:intergenic |
AGCACCAGTCTCGCTGAAGA+AGG | 0.536901 | 1.3:+72558879 | None:intergenic |
AAGCTTGCGGATAACTGCAC+TGG | 0.544380 | 1.3:-72558565 | MS.gene91342:CDS |
ATGCCGAGTGACAAGACTGT+TGG | 0.545145 | 1.3:-72558925 | MS.gene91342:CDS |
TGATGGCTCAAAAGCACTGT+TGG | 0.546926 | 1.3:+72557941 | None:intergenic |
GATAACTGCACTGGTCTCCA+AGG | 0.549224 | 1.3:-72558556 | MS.gene91342:CDS |
GACTGAATTCCAGACCAACT+TGG | 0.549713 | 1.3:-72558060 | MS.gene91342:CDS |
GCACCAATCCACAAACTGAA+TGG | 0.551570 | 1.3:+72557797 | None:intergenic |
GAGGTGGAAACCTGAGGGGA+GGG | 0.551933 | 1.3:+72558418 | None:intergenic |
ATAGACAGTAAACCCAAGCT+TGG | 0.556586 | 1.3:+72558441 | None:intergenic |
CGGTTAAGGTTGGTGTAAGT+GGG | 0.558069 | 1.3:+72558271 | None:intergenic |
CAACAGAGGTGGAAACCTGA+GGG | 0.558387 | 1.3:+72558413 | None:intergenic |
AGCAAGCCATGTACTTTCCA+TGG | 0.560681 | 1.3:+72557892 | None:intergenic |
TACTGTCTCGAACACGGCAT+CGG | 0.561154 | 1.3:-72562507 | MS.gene91342:CDS |
TCAGGTCGGAAATGCTTGCT+GGG | 0.562273 | 1.3:-72562535 | MS.gene91342:CDS |
GCTGCTCAGGATGGAAGAGC+TGG | 0.564014 | 1.3:+72558779 | None:intergenic |
CAAAGCAGCAAGATCCTCAC+GGG | 0.564402 | 1.3:+72557554 | None:intergenic |
GTTATCGATGAGGTGAGGAC+TGG | 0.564950 | 1.3:-72558811 | MS.gene91342:CDS |
GTTGGTGCCGAGTCTGGTGA+GGG | 0.565547 | 1.3:-72557513 | MS.gene91342:CDS |
AAACCTCAAAGAAGCAGTCA+AGG | 0.571224 | 1.3:+72558106 | None:intergenic |
ACCACGGGCAAAGTTGTTGG+CGG | 0.573940 | 1.3:+72558735 | None:intergenic |
CACTGATGAGCTGCTCAGGA+TGG | 0.573952 | 1.3:+72558770 | None:intergenic |
TGCCCTACTGGTTTCAAGTG+TGG | 0.577249 | 1.3:-72557777 | MS.gene91342:CDS |
GCATTTGTTCACTGGTATGT+GGG | 0.578176 | 1.3:-72557609 | MS.gene91342:CDS |
ATCACCGCCCTCACCAGACT+CGG | 0.580489 | 1.3:+72557506 | None:intergenic |
GGACCGCATCAGAAAGCTTG+CGG | 0.580489 | 1.3:-72558578 | MS.gene91342:CDS |
CCAAAGCAGCAAGATCCTCA+CGG | 0.583986 | 1.3:+72557553 | None:intergenic |
TCCAGTTATATCTGCTGAGA+AGG | 0.585678 | 1.3:-72557997 | MS.gene91342:CDS |
GCCATGTACTTTCCATGGCG+AGG | 0.586030 | 1.3:+72557897 | None:intergenic |
ACCTTAGCAAGGTCACCACC+AGG | 0.592703 | 1.3:+72557726 | None:intergenic |
GTTCACTGGTATGTGGGTGA+GGG | 0.594621 | 1.3:-72557603 | MS.gene91342:CDS |
CCATGTACTTTCCATGGCGA+GGG | 0.595056 | 1.3:+72557898 | None:intergenic |
TATCCGCAAGCTTTCTGATG+CGG | 0.599158 | 1.3:+72558575 | None:intergenic |
AGTTGGTGCCGAGTCTGGTG+AGG | 0.599254 | 1.3:-72557514 | MS.gene91342:CDS |
GTGCTCCAAGAGGGAGTGGG+TGG | 0.600125 | 1.3:+72558366 | None:intergenic |
AGTGGGACGCTCAATGTCGA+GGG | 0.600615 | 1.3:+72558288 | None:intergenic |
AGTGACAAGACTGTTGGAGG+CGG | 0.604399 | 1.3:-72558919 | MS.gene91342:CDS |
AAGTGGGACGCTCAATGTCG+AGG | 0.610089 | 1.3:+72558287 | None:intergenic |
CCGAGGTGATGTTGTTCCCA+AGG | 0.612147 | 1.3:-72557859 | MS.gene91342:CDS |
CATCCTGAGCAGCTCATCAG+TGG | 0.614786 | 1.3:-72558769 | MS.gene91342:CDS |
ACAACAGAGGTGGAAACCTG+AGG | 0.615914 | 1.3:+72558412 | None:intergenic |
AGGATGGAAGAGCTGGCGAT+AGG | 0.617520 | 1.3:+72558786 | None:intergenic |
CTGCCCTCTGTACCTTAGCA+AGG | 0.618015 | 1.3:+72557715 | None:intergenic |
GCCGCCAACAACTTTGCCCG+TGG | 0.620859 | 1.3:-72558736 | MS.gene91342:CDS |
GCTAAGTGTGACCCTCGCCA+TGG | 0.621505 | 1.3:-72557909 | MS.gene91342:CDS |
CCAAGAGGGAGTGGGTGGAG+AGG | 0.621744 | 1.3:+72558371 | None:intergenic |
CTCACCTCATCGATAACAGT+GGG | 0.621848 | 1.3:+72558817 | None:intergenic |
AACATCAGTGTGCTCCAAGA+GGG | 0.623268 | 1.3:+72558357 | None:intergenic |
ATACCACACTTGAAACCAGT+AGG | 0.623812 | 1.3:+72557774 | None:intergenic |
AGAAACAAGACGGTTAAGGT+TGG | 0.623820 | 1.3:+72558261 | None:intergenic |
CCTCCAACAGTCTTGTCACT+CGG | 0.624881 | 1.3:+72558922 | None:intergenic |
ATAACTGCACTGGTCTCCAA+GGG | 0.627993 | 1.3:-72558555 | MS.gene91342:CDS |
CCACCTACTGTTGTTCCTGG+TGG | 0.628220 | 1.3:-72557741 | MS.gene91342:CDS |
TCACCACCAGGAACAACAGT+AGG | 0.629041 | 1.3:+72557738 | None:intergenic |
TCTGGGATATGGGACCAAGT+TGG | 0.629717 | 1.3:+72558046 | None:intergenic |
AGAGGTGGAAACCTGAGGGG+AGG | 0.631975 | 1.3:+72558417 | None:intergenic |
GAGCTTTACTGTCTCGAACA+CGG | 0.642769 | 1.3:-72562513 | MS.gene91342:CDS |
AGTGTGCTCCAAGAGGGAGT+GGG | 0.645027 | 1.3:+72558363 | None:intergenic |
GATTTCAAACTCAACAAGTG+TGG | 0.651909 | 1.3:-72557685 | MS.gene91342:CDS |
GAGTGCATTTCAGTTCACAT+TGG | 0.652240 | 1.3:-72562570 | MS.gene91342:CDS |
TGACCTTGCTAAGGTACAGA+GGG | 0.652678 | 1.3:-72557718 | MS.gene91342:CDS |
GGTCAAGCCGGTATTCAGGT+CGG | 0.654170 | 1.3:-72562549 | MS.gene91342:CDS |
CATACTGGTATAATGACCAC+GGG | 0.654535 | 1.3:+72558720 | None:intergenic |
CAACATCAGTGTGCTCCAAG+AGG | 0.655535 | 1.3:+72558356 | None:intergenic |
TACCACACTTGAAACCAGTA+GGG | 0.657871 | 1.3:+72557775 | None:intergenic |
CCACCAGGAACAACAGTAGG+TGG | 0.665309 | 1.3:+72557741 | None:intergenic |
GTGACCTTGCTAAGGTACAG+AGG | 0.667763 | 1.3:-72557719 | MS.gene91342:CDS |
ACATACTGGTATAATGACCA+CGG | 0.669902 | 1.3:+72558719 | None:intergenic |
GGTGCCGAGTCTGGTGAGGG+CGG | 0.669914 | 1.3:-72557510 | MS.gene91342:CDS |
GTATGGCTCAACAACAGAGG+TGG | 0.674184 | 1.3:+72558402 | None:intergenic |
TGAGCCCACTGTTATCGATG+AGG | 0.676846 | 1.3:-72558821 | MS.gene91342:CDS |
TCGCTACAATCAAAACCAAG+AGG | 0.680258 | 1.3:-72557821 | MS.gene91342:CDS |
TAGCTACCTGAGAAACAAGA+CGG | 0.682350 | 1.3:+72558251 | None:intergenic |
CCACTGTTATCGATGAGGTG+AGG | 0.685674 | 1.3:-72558816 | MS.gene91342:CDS |
CCTCACCTCATCGATAACAG+TGG | 0.687640 | 1.3:+72558816 | None:intergenic |
GTTGTATGGCTCAACAACAG+AGG | 0.698181 | 1.3:+72558399 | None:intergenic |
GCTTGCTGTTTGATGTACCG+AGG | 0.706496 | 1.3:-72557876 | MS.gene91342:CDS |
AACAGAGGTGGAAACCTGAG+GGG | 0.715815 | 1.3:+72558414 | None:intergenic |
CCTTGGGAACAACATCACCT+CGG | 0.723454 | 1.3:+72557859 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAAAATAAATAATAAA+AGG | - | chr1.3:72559053-72559072 | MS.gene91342:intron | 0.0% |
!! | AAATTGTTAACATTAATTAT+AGG | - | chr1.3:72559733-72559752 | MS.gene91342:intron | 10.0% |
!! | AATTATAAAAAAAAATCATG+TGG | + | chr1.3:72558349-72558368 | None:intergenic | 10.0% |
!! | TTAAATTAAAATTGGAAAAA+TGG | - | chr1.3:72560277-72560296 | MS.gene91342:intron | 10.0% |
!! | AAAAAGGATTATCATAAAAA+AGG | - | chr1.3:72560523-72560542 | MS.gene91342:intron | 15.0% |
!! | AAAAAGGTTTATATTCAAAA+AGG | - | chr1.3:72560539-72560558 | MS.gene91342:intron | 15.0% |
!! | AGATAAAATTGAAAAAACAA+CGG | + | chr1.3:72557716-72557735 | None:intergenic | 15.0% |
!!! | AATCATTTTTTTGTTAAATG+AGG | + | chr1.3:72559973-72559992 | None:intergenic | 15.0% |
!!! | AATTCGTTTTTATCTAATTT+CGG | - | chr1.3:72558730-72558749 | MS.gene91342:CDS | 15.0% |
!!! | ATTTTCCATGTTAAATTAAT+CGG | - | chr1.3:72557774-72557793 | MS.gene91342:CDS | 15.0% |
!!! | ATTTTGTTGACATTAATTAT+AGG | - | chr1.3:72559853-72559872 | MS.gene91342:intron | 15.0% |
!!! | TCTATTAATGAGTATTTTTT+GGG | + | chr1.3:72559588-72559607 | None:intergenic | 15.0% |
!!! | TTTTAAAAAACCCAAAAATT+AGG | - | chr1.3:72559609-72559628 | MS.gene91342:intron | 15.0% |
!! | AAATGAAAGCTTAATTTCAA+GGG | - | chr1.3:72558120-72558139 | MS.gene91342:intron | 20.0% |
!! | AGTATCAAACTTTAATTGAA+TGG | + | chr1.3:72561005-72561024 | None:intergenic | 20.0% |
!! | ATATTGAGATTCATGTTATT+TGG | - | chr1.3:72560377-72560396 | MS.gene91342:intron | 20.0% |
!! | ATCAAATTTAGAAACAATAC+AGG | + | chr1.3:72557756-72557775 | None:intergenic | 20.0% |
!! | ATTTAATCTCTATGTTATTG+TGG | - | chr1.3:72558313-72558332 | MS.gene91342:CDS | 20.0% |
!! | TAAATGAAAGCTTAATTTCA+AGG | - | chr1.3:72558119-72558138 | MS.gene91342:CDS | 20.0% |
!! | TAATATGAGAGAGAAAAATA+CGG | + | chr1.3:72559187-72559206 | None:intergenic | 20.0% |
!! | TAGTGATTTGATAAAAAATC+TGG | + | chr1.3:72558453-72558472 | None:intergenic | 20.0% |
!! | TCAATTAAAGTTTGATACTA+TGG | - | chr1.3:72561006-72561025 | MS.gene91342:intron | 20.0% |
!! | TCTGTTTATGAGTTAATATA+TGG | - | chr1.3:72558077-72558096 | MS.gene91342:CDS | 20.0% |
!! | TGTTTATTTCATGATCTTAA+CGG | - | chr1.3:72558282-72558301 | MS.gene91342:CDS | 20.0% |
!! | TTAAAATTGGAAAAATGGAT+TGG | - | chr1.3:72560282-72560301 | MS.gene91342:intron | 20.0% |
!! | TTACATAACCTAATAACAAA+CGG | + | chr1.3:72557903-72557922 | None:intergenic | 20.0% |
!! | TTACATAACCTAATAACATA+CGG | + | chr1.3:72560906-72560925 | None:intergenic | 20.0% |
!! | TTGAAATTAGGAAAATTCTA+TGG | + | chr1.3:72560780-72560799 | None:intergenic | 20.0% |
!! | TTGTTAACATTAATTATAGG+TGG | - | chr1.3:72559736-72559755 | MS.gene91342:intron | 20.0% |
!! | TTGTTTAATAAAGAAGATGA+TGG | - | chr1.3:72560428-72560447 | MS.gene91342:intron | 20.0% |
!!! | AAACGAGTTGAATTTAAATT+AGG | - | chr1.3:72560312-72560331 | MS.gene91342:intron | 20.0% |
!!! | AACGAGTTGAATTTAAATTA+GGG | - | chr1.3:72560313-72560332 | MS.gene91342:intron | 20.0% |
!!! | AGTAATAAATGCCTAATTTT+TGG | + | chr1.3:72559623-72559642 | None:intergenic | 20.0% |
!!! | ATTCGTTTTTATCTAATTTC+GGG | - | chr1.3:72558731-72558750 | MS.gene91342:CDS | 20.0% |
!!! | GTAATAAATGCCTAATTTTT+GGG | + | chr1.3:72559622-72559641 | None:intergenic | 20.0% |
!!! | GTCTATTAATGAGTATTTTT+TGG | + | chr1.3:72559589-72559608 | None:intergenic | 20.0% |
!!! | TAAAATTGGAAAAATGGATT+GGG | - | chr1.3:72560283-72560302 | MS.gene91342:intron | 20.0% |
!!! | TATTAAGTTGTTAAACATCT+CGG | + | chr1.3:72560065-72560084 | None:intergenic | 20.0% |
! | AAATATGTTATCTATGTTCG+TGG | - | chr1.3:72560869-72560888 | MS.gene91342:intron | 25.0% |
! | AATATGAGAGAGAAAAATAC+GGG | + | chr1.3:72559186-72559205 | None:intergenic | 25.0% |
! | ATAACAAATCTGAACGAAAA+TGG | + | chr1.3:72557614-72557633 | None:intergenic | 25.0% |
! | ATCACAAATGAGTTATAATG+TGG | + | chr1.3:72561383-72561402 | None:intergenic | 25.0% |
! | ATTAACATTTGCCAACAAAA+TGG | - | chr1.3:72559203-72559222 | MS.gene91342:intron | 25.0% |
! | ATTTACAAAAATCCATGTCA+AGG | - | chr1.3:72559397-72559416 | MS.gene91342:intron | 25.0% |
! | CTATTAATGAATCAATTGAC+TGG | - | chr1.3:72559147-72559166 | MS.gene91342:intron | 25.0% |
! | GCAGATTCAACAATAATATA+CGG | + | chr1.3:72560043-72560062 | None:intergenic | 25.0% |
! | TATTAGATCCGTATGTTATT+AGG | - | chr1.3:72560895-72560914 | MS.gene91342:intron | 25.0% |
! | TTATTTCAAGAGCTCATATA+TGG | - | chr1.3:72561085-72561104 | MS.gene91342:intron | 25.0% |
! | TTGATGTTCATAATCTTTCT+GGG | - | chr1.3:72560467-72560486 | MS.gene91342:intron | 25.0% |
! | TTTCCTTAGATCTGAAAAAT+AGG | + | chr1.3:72557688-72557707 | None:intergenic | 25.0% |
!! | ATGTGTGTTATTAATACAGT+TGG | + | chr1.3:72559795-72559814 | None:intergenic | 25.0% |
!! | CAACACTATGATTTGAAATT+AGG | + | chr1.3:72560792-72560811 | None:intergenic | 25.0% |
!! | CAGTCAATTGATTCATTAAT+AGG | + | chr1.3:72559149-72559168 | None:intergenic | 25.0% |
!! | TTTAATAAAGAAGATGATGG+AGG | - | chr1.3:72560431-72560450 | MS.gene91342:intron | 25.0% |
!!! | AAACTGTTTTTTTCTCGTTA+AGG | + | chr1.3:72559558-72559577 | None:intergenic | 25.0% |
!!! | AACTGTTTTTTTCTCGTTAA+GGG | + | chr1.3:72559557-72559576 | None:intergenic | 25.0% |
!!! | AAGGATAATGTATTGATTGA+TGG | - | chr1.3:72559416-72559435 | MS.gene91342:intron | 25.0% |
!!! | AATTTGTGTCATTTTCAGTT+GGG | - | chr1.3:72561437-72561456 | MS.gene91342:intron | 25.0% |
!!! | AGGATAATGTATTGATTGAT+GGG | - | chr1.3:72559417-72559436 | MS.gene91342:intron | 25.0% |
!!! | ATTTTTTTGTTAAATGAGGC+TGG | + | chr1.3:72559969-72559988 | None:intergenic | 25.0% |
!!! | CTTTGTTTTTGATTGTTTTC+AGG | - | chr1.3:72561923-72561942 | MS.gene91342:intron | 25.0% |
!!! | GTTGTTTTGTTATGTTATCT+TGG | - | chr1.3:72560808-72560827 | MS.gene91342:intron | 25.0% |
!!! | TAATTTGTGTCATTTTCAGT+TGG | - | chr1.3:72561436-72561455 | MS.gene91342:intron | 25.0% |
!!! | TAGCTTTAGATTAAAACTGA+AGG | + | chr1.3:72559251-72559270 | None:intergenic | 25.0% |
!!! | TATTAGATCCGTTTGTTATT+AGG | - | chr1.3:72557892-72557911 | MS.gene91342:CDS | 25.0% |
AAAAAGAATTCATGTGTGGT+TGG | + | chr1.3:72558671-72558690 | None:intergenic | 30.0% | |
AAATCTGAACGAAAATGGAA+TGG | + | chr1.3:72557609-72557628 | None:intergenic | 30.0% | |
AACAATCAACAATTGAGAAG+TGG | + | chr1.3:72560944-72560963 | None:intergenic | 30.0% | |
AAGGGATGAATCATAATTCA+TGG | + | chr1.3:72559290-72559309 | None:intergenic | 30.0% | |
ACAATTCTGATTGTGAATTG+CGG | - | chr1.3:72561852-72561871 | MS.gene91342:intron | 30.0% | |
AGGGATGAATCATAATTCAT+GGG | + | chr1.3:72559289-72559308 | None:intergenic | 30.0% | |
CAGATCCGATTAATTTAACA+TGG | + | chr1.3:72557782-72557801 | None:intergenic | 30.0% | |
CTAAACAAAAATCCATGTCA+AGG | - | chr1.3:72559343-72559362 | MS.gene91342:intron | 30.0% | |
GAAAAGGATTATGAAGAAGT+TGG | - | chr1.3:72562530-72562549 | MS.gene91342:CDS | 30.0% | |
GAAGAAAAAGAATTCATGTG+TGG | + | chr1.3:72558675-72558694 | None:intergenic | 30.0% | |
GAGATGAAAAAGTGATAAAG+TGG | + | chr1.3:72558384-72558403 | None:intergenic | 30.0% | |
GTCATCACTTAAAATCTGAT+TGG | + | chr1.3:72558200-72558219 | None:intergenic | 30.0% | |
GTTGATGTTCATAATCTTTC+TGG | - | chr1.3:72560466-72560485 | MS.gene91342:intron | 30.0% | |
TCAATACATTATCCTTGACA+TGG | + | chr1.3:72559412-72559431 | None:intergenic | 30.0% | |
TCATGAAATAAACATGTCCA+TGG | + | chr1.3:72558276-72558295 | None:intergenic | 30.0% | |
TCTTTATCGTCGTTCAAAAT+CGG | + | chr1.3:72560240-72560259 | None:intergenic | 30.0% | |
TGAATAGCAGTAAAATAGAG+AGG | - | chr1.3:72558980-72558999 | MS.gene91342:intron | 30.0% | |
TGTAATATTTGTGAAATCGC+TGG | - | chr1.3:72557842-72557861 | MS.gene91342:CDS | 30.0% | |
TGTTGGGACAAATTCTAATA+TGG | - | chr1.3:72558228-72558247 | MS.gene91342:intron | 30.0% | |
TTAGATTAAAACTGAAGGTC+TGG | + | chr1.3:72559246-72559265 | None:intergenic | 30.0% | |
! | CATATGAAGAAAGCATGAAA+TGG | + | chr1.3:72562043-72562062 | None:intergenic | 30.0% |
! | CTTTTGTGTTGAGAAGAAAA+TGG | - | chr1.3:72560343-72560362 | MS.gene91342:intron | 30.0% |
! | GAATTCTTGTTTGAATCTTG+CGG | - | chr1.3:72557946-72557965 | MS.gene91342:CDS | 30.0% |
! | GACTTAAAGTTATGCTTTTC+TGG | - | chr1.3:72558885-72558904 | MS.gene91342:CDS | 30.0% |
! | TCAAAAAAGCTAGTCTAAAG+TGG | - | chr1.3:72560628-72560647 | MS.gene91342:intron | 30.0% |
! | TTTGTTATATGCGTTTCTCT+AGG | - | chr1.3:72557626-72557645 | MS.gene91342:CDS | 30.0% |
!! | AGTCGTTCAATTGACTTTTT+CGG | + | chr1.3:72560754-72560773 | None:intergenic | 30.0% |
!! | ATACAGTTGGTAGAGATTTA+CGG | + | chr1.3:72559782-72559801 | None:intergenic | 30.0% |
!! | GGATTTTTGTTTAGTGGAAA+AGG | + | chr1.3:72559337-72559356 | None:intergenic | 30.0% |
!! | GTTCCTATTTTTCAGATCTA+AGG | - | chr1.3:72557682-72557701 | MS.gene91342:CDS | 30.0% |
!! | TAAAAACGAATTTGCTAAGC+AGG | + | chr1.3:72558722-72558741 | None:intergenic | 30.0% |
!! | TGACATGGATTTTTGTTTAG+TGG | + | chr1.3:72559343-72559362 | None:intergenic | 30.0% |
!!! | AAGTTATGCTTTTCTGGTTT+TGG | - | chr1.3:72558891-72558910 | MS.gene91342:CDS | 30.0% |
!!! | AGTTATGCTTTTCTGGTTTT+GGG | - | chr1.3:72558892-72558911 | MS.gene91342:CDS | 30.0% |
!!! | TTTTTGGTTTTCAATGCTGT+TGG | - | chr1.3:72561529-72561548 | MS.gene91342:intron | 30.0% |
AAAAACTGATGATCGTTCAG+GGG | + | chr1.3:72559314-72559333 | None:intergenic | 35.0% | |
AAGATCTACAAAAACAGCAC+GGG | + | chr1.3:72561221-72561240 | None:intergenic | 35.0% | |
AAGCTATCTATGACATCTGT+AGG | - | chr1.3:72561746-72561765 | MS.gene91342:intron | 35.0% | |
AAGTCAGGAGAATGATTCTT+CGG | - | chr1.3:72558156-72558175 | MS.gene91342:intron | 35.0% | |
ACATACTGGTATAATGACCA+CGG | + | chr1.3:72561345-72561364 | None:intergenic | 35.0% | |
ATGGAAAGAAATCCAAGCTT+GGG | - | chr1.3:72561608-72561627 | MS.gene91342:intron | 35.0% | |
ATTGAAATTTCATCGAGCTG+TGG | - | chr1.3:72559463-72559482 | MS.gene91342:intron | 35.0% | |
CAAGATCTACAAAAACAGCA+CGG | + | chr1.3:72561222-72561241 | None:intergenic | 35.0% | |
CATTGAAAACCAAAAACCCT+TGG | + | chr1.3:72561525-72561544 | None:intergenic | 35.0% | |
CTTCATCTTCTACATCTAGT+CGG | + | chr1.3:72558948-72558967 | None:intergenic | 35.0% | |
GAAAAACTGATGATCGTTCA+GGG | + | chr1.3:72559315-72559334 | None:intergenic | 35.0% | |
GATTTCAAACTCAACAAGTG+TGG | - | chr1.3:72562376-72562395 | MS.gene91342:intron | 35.0% | |
GGGATGAATCATAATTCATG+GGG | + | chr1.3:72559288-72559307 | None:intergenic | 35.0% | |
TAAAGTGGTACATATTGAGC+AGG | - | chr1.3:72560643-72560662 | MS.gene91342:intron | 35.0% | |
TAGAGAGATAATCCTTGACA+TGG | + | chr1.3:72559358-72559377 | None:intergenic | 35.0% | |
TATGGAAAGAAATCCAAGCT+TGG | - | chr1.3:72561607-72561626 | MS.gene91342:intron | 35.0% | |
TGAAAAGGGTTAAAATGACC+CGG | + | chr1.3:72560180-72560199 | None:intergenic | 35.0% | |
TGAAATAAACATGTCCATGG+TGG | + | chr1.3:72558273-72558292 | None:intergenic | 35.0% | |
TGATAAAGTGGAGAGAGAAT+TGG | + | chr1.3:72558372-72558391 | None:intergenic | 35.0% | |
TGGCAATTGCAAAAATGAGA+GGG | - | chr1.3:72559531-72559550 | MS.gene91342:intron | 35.0% | |
TTCATCTTCTACATCTAGTC+GGG | + | chr1.3:72558947-72558966 | None:intergenic | 35.0% | |
TTGGCAATTGCAAAAATGAG+AGG | - | chr1.3:72559530-72559549 | MS.gene91342:intron | 35.0% | |
TTTGCACAGAAACAACAACA+AGG | - | chr1.3:72558600-72558619 | MS.gene91342:CDS | 35.0% | |
! | AGAAAGCATGAAATGGATTC+TGG | + | chr1.3:72562036-72562055 | None:intergenic | 35.0% |
! | GAAAGCATGAAATGGATTCT+GGG | + | chr1.3:72562035-72562054 | None:intergenic | 35.0% |
! | TAGTGAAGTGCTTAATCTGA+TGG | - | chr1.3:72560604-72560623 | MS.gene91342:intron | 35.0% |
! | TTTTGAGCCATCATCTATGA+TGG | - | chr1.3:72562130-72562149 | MS.gene91342:intron | 35.0% |
!! | ATGAAATGGATTCTGGGATA+TGG | + | chr1.3:72562029-72562048 | None:intergenic | 35.0% |
!! | TAAAGAAGATGATGGAGGTA+TGG | - | chr1.3:72560436-72560455 | MS.gene91342:intron | 35.0% |
!! | TGAAATGGATTCTGGGATAT+GGG | + | chr1.3:72562028-72562047 | None:intergenic | 35.0% |
AAACCTCAAAGAAGCAGTCA+AGG | + | chr1.3:72561958-72561977 | None:intergenic | 40.0% | |
AATTTCATCGAGCTGTGGTA+TGG | - | chr1.3:72559468-72559487 | MS.gene91342:intron | 40.0% | |
ACAACGTGGCGCATTATTAT+TGG | - | chr1.3:72560712-72560731 | MS.gene91342:intron | 40.0% | |
AGAAACAAGACGGTTAAGGT+TGG | + | chr1.3:72561803-72561822 | None:intergenic | 40.0% | |
AGAGATCGTTGATCTGTGTT+TGG | - | chr1.3:72561462-72561481 | MS.gene91342:intron | 40.0% | |
AGATCTACAAAAACAGCACG+GGG | + | chr1.3:72561220-72561239 | None:intergenic | 40.0% | |
AGTGAAACCCGAAATTAGAC+CGG | - | chr1.3:72560204-72560223 | MS.gene91342:intron | 40.0% | |
ATACCACACTTGAAACCAGT+AGG | + | chr1.3:72562290-72562309 | None:intergenic | 40.0% | |
ATAGACAGTAAACCCAAGCT+TGG | + | chr1.3:72561623-72561642 | None:intergenic | 40.0% | |
CAAAATCGGTATAAATCGCC+CGG | + | chr1.3:72560226-72560245 | None:intergenic | 40.0% | |
CAACGTGGCGCATTATTATT+GGG | - | chr1.3:72560713-72560732 | MS.gene91342:intron | 40.0% | |
CACTTAGCCATCATAGATGA+TGG | + | chr1.3:72562140-72562159 | None:intergenic | 40.0% | |
CATACTGGTATAATGACCAC+GGG | + | chr1.3:72561344-72561363 | None:intergenic | 40.0% | |
CATGACATCATTCAACAACG+TGG | - | chr1.3:72560698-72560717 | MS.gene91342:intron | 40.0% | |
CCAACAAAATGGAGCTTACT+AGG | - | chr1.3:72559214-72559233 | MS.gene91342:intron | 40.0% | |
GAGTGCATTTCAGTTCACAT+TGG | - | chr1.3:72557491-72557510 | MS.gene91342:CDS | 40.0% | |
GCATTTGTTCACTGGTATGT+GGG | - | chr1.3:72562452-72562471 | MS.gene91342:intron | 40.0% | |
GGAAAAACTGATGATCGTTC+AGG | + | chr1.3:72559316-72559335 | None:intergenic | 40.0% | |
GTACATATTGAGCAGGTACA+CGG | - | chr1.3:72560650-72560669 | MS.gene91342:intron | 40.0% | |
GTTGTGAGTTAGAGACATAC+TGG | + | chr1.3:72561359-72561378 | None:intergenic | 40.0% | |
TAAATCGCCCGGTCTAATTT+CGG | + | chr1.3:72560215-72560234 | None:intergenic | 40.0% | |
TACCACACTTGAAACCAGTA+GGG | + | chr1.3:72562289-72562308 | None:intergenic | 40.0% | |
TAGCTACCTGAGAAACAAGA+CGG | + | chr1.3:72561813-72561832 | None:intergenic | 40.0% | |
TCCAGTTATATCTGCTGAGA+AGG | - | chr1.3:72562064-72562083 | MS.gene91342:intron | 40.0% | |
TCGCTACAATCAAAACCAAG+AGG | - | chr1.3:72562240-72562259 | MS.gene91342:intron | 40.0% | |
TGCATTTGTTCACTGGTATG+TGG | - | chr1.3:72562451-72562470 | MS.gene91342:intron | 40.0% | |
TGTGCAAGATTGCACAGTTA+AGG | - | chr1.3:72559088-72559107 | MS.gene91342:intron | 40.0% | |
TTAACTGTGCAATCTTGCAC+AGG | + | chr1.3:72559089-72559108 | None:intergenic | 40.0% | |
TTCGGTGAAGTCGTTTGAAA+GGG | - | chr1.3:72558174-72558193 | MS.gene91342:intron | 40.0% | |
TTCTTATATGCACAGCCTGA+TGG | - | chr1.3:72561109-72561128 | MS.gene91342:intron | 40.0% | |
TTGCTTCATATGTTCCACCA+TGG | - | chr1.3:72558256-72558275 | MS.gene91342:intron | 40.0% | |
! | CCTAGTAAGCTCCATTTTGT+TGG | + | chr1.3:72559217-72559236 | None:intergenic | 40.0% |
!! | ACTGCTTCTTTGAGGTTTGA+TGG | - | chr1.3:72561960-72561979 | MS.gene91342:intron | 40.0% |
!! | CATGTGTGTTGACTGTTGTA+TGG | + | chr1.3:72560682-72560701 | None:intergenic | 40.0% |
!! | TTGGTTTTCAATGCTGTTGG+AGG | - | chr1.3:72561532-72561551 | MS.gene91342:intron | 40.0% |
AAACTCAACAAGTGTGGCTG+AGG | - | chr1.3:72562382-72562401 | MS.gene91342:intron | 45.0% | |
AAATCGCCCGGTCTAATTTC+GGG | + | chr1.3:72560214-72560233 | None:intergenic | 45.0% | |
AACATCAGTGTGCTCCAAGA+GGG | + | chr1.3:72561707-72561726 | None:intergenic | 45.0% | |
AAGGGTTAAAATGACCCGGT+TGG | + | chr1.3:72560176-72560195 | None:intergenic | 45.0% | |
ACAGCAGCATTCACATCCTT+GGG | + | chr1.3:72562221-72562240 | None:intergenic | 45.0% | |
AGCAAGCCATGTACTTTCCA+TGG | + | chr1.3:72562172-72562191 | None:intergenic | 45.0% | |
AGCAGGTGTTAACAAAGCGT+TGG | + | chr1.3:72558705-72558724 | None:intergenic | 45.0% | |
AGCATTTCCGACCTGAATAC+CGG | + | chr1.3:72557522-72557541 | None:intergenic | 45.0% | |
AGTGATGACACGTCAGATGT+TGG | - | chr1.3:72558211-72558230 | MS.gene91342:intron | 45.0% | |
ATCGAGCTGTGGTATGGTAA+GGG | - | chr1.3:72559474-72559493 | MS.gene91342:intron | 45.0% | |
CAAGAGGACCATTCAGTTTG+TGG | - | chr1.3:72562256-72562275 | MS.gene91342:intron | 45.0% | |
CACAAACTGAATGGTCCTCT+TGG | + | chr1.3:72562258-72562277 | None:intergenic | 45.0% | |
CATCCTTGACTGCTTCTTTG+AGG | - | chr1.3:72561952-72561971 | MS.gene91342:intron | 45.0% | |
CCTGAGAAACAAGACGGTTA+AGG | + | chr1.3:72561807-72561826 | None:intergenic | 45.0% | |
CTCACCTCATCGATAACAGT+GGG | + | chr1.3:72561247-72561266 | None:intergenic | 45.0% | |
CTTCGGTGAAGTCGTTTGAA+AGG | - | chr1.3:72558173-72558192 | MS.gene91342:intron | 45.0% | |
GACTGAATTCCAGACCAACT+TGG | - | chr1.3:72562001-72562020 | MS.gene91342:intron | 45.0% | |
GAGCTTTACTGTCTCGAACA+CGG | - | chr1.3:72557548-72557567 | MS.gene91342:CDS | 45.0% | |
GATCTACAAAAACAGCACGG+GGG | + | chr1.3:72561219-72561238 | None:intergenic | 45.0% | |
GATTGCACATCAGTGTGATC+TGG | - | chr1.3:72559503-72559522 | MS.gene91342:intron | 45.0% | |
GCACCAATCCACAAACTGAA+TGG | + | chr1.3:72562267-72562286 | None:intergenic | 45.0% | |
GCCTTCTCAGCAGATATAAC+TGG | + | chr1.3:72562068-72562087 | None:intergenic | 45.0% | |
GGACCATTCAGTTTGTGGAT+TGG | - | chr1.3:72562261-72562280 | MS.gene91342:intron | 45.0% | |
GGAGCTTCTATGAAGAAGTC+AGG | - | chr1.3:72558141-72558160 | MS.gene91342:intron | 45.0% | |
GTGAAACCCGAAATTAGACC+GGG | - | chr1.3:72560205-72560224 | MS.gene91342:intron | 45.0% | |
GTGATGACACGTCAGATGTT+GGG | - | chr1.3:72558212-72558231 | MS.gene91342:intron | 45.0% | |
GTTGTATGGCTCAACAACAG+AGG | + | chr1.3:72561665-72561684 | None:intergenic | 45.0% | |
TATCCGCAAGCTTTCTGATG+CGG | + | chr1.3:72561489-72561508 | None:intergenic | 45.0% | |
TCAGTTCACATTGGTCAAGC+CGG | - | chr1.3:72557500-72557519 | MS.gene91342:CDS | 45.0% | |
TGACCTTGCTAAGGTACAGA+GGG | - | chr1.3:72562343-72562362 | MS.gene91342:intron | 45.0% | |
TGATGATCGTTCAGGGGAAA+GGG | + | chr1.3:72559308-72559327 | None:intergenic | 45.0% | |
! | ATAACTGCACTGGTCTCCAA+GGG | - | chr1.3:72561506-72561525 | MS.gene91342:intron | 45.0% |
! | ATCAGTGTGATCTGGTTCGT+TGG | - | chr1.3:72559511-72559530 | MS.gene91342:intron | 45.0% |
! | CACTGATGTTGCTGTTCTTC+TGG | - | chr1.3:72561717-72561736 | MS.gene91342:intron | 45.0% |
! | GAGCGTCTGTCTGTTGATTA+TGG | - | chr1.3:72561589-72561608 | MS.gene91342:intron | 45.0% |
! | GGGTTTCACTGGTCTGAAAA+GGG | + | chr1.3:72560194-72560213 | None:intergenic | 45.0% |
! | GTTTTCAATGCTGTTGGAGG+AGG | - | chr1.3:72561535-72561554 | MS.gene91342:intron | 45.0% |
!! | ACGGTTAAGGTTGGTGTAAG+TGG | + | chr1.3:72561794-72561813 | None:intergenic | 45.0% |
!! | AGATGATGGAGGTATGGAGA+TGG | - | chr1.3:72560442-72560461 | MS.gene91342:intron | 45.0% |
!! | CCTTAACCGTCTTGTTTCTC+AGG | - | chr1.3:72561804-72561823 | MS.gene91342:intron | 45.0% |
!! | CGGTTAAGGTTGGTGTAAGT+GGG | + | chr1.3:72561793-72561812 | None:intergenic | 45.0% |
!! | GGATCTTGCTGCTTTGGAAA+AGG | - | chr1.3:72562514-72562533 | MS.gene91342:CDS | 45.0% |
!! | GGTCTAATTTCGGGTTTCAC+TGG | + | chr1.3:72560205-72560224 | None:intergenic | 45.0% |
!! | TGATGGCTCAAAAGCACTGT+TGG | + | chr1.3:72562123-72562142 | None:intergenic | 45.0% |
!!! | AGAATTTTCTGAAGCCCGTG+AGG | - | chr1.3:72562493-72562512 | MS.gene91342:intron | 45.0% |
!!! | TTTCTGGTTTTGGGTCGCAT+GGG | - | chr1.3:72558901-72558920 | MS.gene91342:CDS | 45.0% |
!!! | TTTTCTGGTTTTGGGTCGCA+TGG | - | chr1.3:72558900-72558919 | MS.gene91342:CDS | 45.0% |
!! | AAATAATTAAGAAATAATAA+TGG | - | chr1.3:72559690-72559709 | MS.gene91342:intron | 5.0% |
!!! | AAATTGTTTTAAATTAAAAT+TGG | - | chr1.3:72560269-72560288 | MS.gene91342:intron | 5.0% |
!!! | ATGAAATATTTTTTATAAAA+AGG | - | chr1.3:72560507-72560526 | MS.gene91342:intron | 5.0% |
!!! | ATTTCATTTTTTTAATTTTT+TGG | + | chr1.3:72558551-72558570 | None:intergenic | 5.0% |
!!! | ATTTCTTAATTATTTTATTA+TGG | + | chr1.3:72559685-72559704 | None:intergenic | 5.0% |
!!! | TTTCTTAATTATTTTATTAT+GGG | + | chr1.3:72559684-72559703 | None:intergenic | 5.0% |
AACACCTTCTTCAGCGAGAC+TGG | - | chr1.3:72561178-72561197 | MS.gene91342:intron | 50.0% | |
AACAGAGGTGGAAACCTGAG+GGG | + | chr1.3:72561650-72561669 | None:intergenic | 50.0% | |
AAGCTTGCGGATAACTGCAC+TGG | - | chr1.3:72561496-72561515 | MS.gene91342:intron | 50.0% | |
AATGCTGTTGGAGGAGGAAC+TGG | - | chr1.3:72561541-72561560 | MS.gene91342:intron | 50.0% | |
ACAACAGAGGTGGAAACCTG+AGG | + | chr1.3:72561652-72561671 | None:intergenic | 50.0% | |
AGAGTGTGACACGACACAGA+TGG | - | chr1.3:72559018-72559037 | MS.gene91342:intron | 50.0% | |
AGTCGTCTTCAACCTCCAAC+CGG | - | chr1.3:72560158-72560177 | MS.gene91342:intron | 50.0% | |
AGTGACAAGACTGTTGGAGG+CGG | - | chr1.3:72561142-72561161 | MS.gene91342:intron | 50.0% | |
ATGACCACGGGCAAAGTTGT+TGG | + | chr1.3:72561332-72561351 | None:intergenic | 50.0% | |
ATGCCGAGTGACAAGACTGT+TGG | - | chr1.3:72561136-72561155 | MS.gene91342:intron | 50.0% | |
CAAAGCAGCAAGATCCTCAC+GGG | + | chr1.3:72562510-72562529 | None:intergenic | 50.0% | |
CAACAGAGGTGGAAACCTGA+GGG | + | chr1.3:72561651-72561670 | None:intergenic | 50.0% | |
CAACATCAGTGTGCTCCAAG+AGG | + | chr1.3:72561708-72561727 | None:intergenic | 50.0% | |
CATCGAGCTGTGGTATGGTA+AGG | - | chr1.3:72559473-72559492 | MS.gene91342:intron | 50.0% | |
CATTGGTCAAGCCGGTATTC+AGG | - | chr1.3:72557508-72557527 | MS.gene91342:CDS | 50.0% | |
CCAAAGCAGCAAGATCCTCA+CGG | + | chr1.3:72562511-72562530 | None:intergenic | 50.0% | |
CCAAGCGTGCATTTGTTCAC+TGG | - | chr1.3:72562444-72562463 | MS.gene91342:intron | 50.0% | |
CCACTGTTATCGATGAGGTG+AGG | - | chr1.3:72561245-72561264 | MS.gene91342:intron | 50.0% | |
CCAGTGAACAAATGCACGCT+TGG | + | chr1.3:72562447-72562466 | None:intergenic | 50.0% | |
CCATGTACTTTCCATGGCGA+GGG | + | chr1.3:72562166-72562185 | None:intergenic | 50.0% | |
CCTCACCTCATCGATAACAG+TGG | + | chr1.3:72561248-72561267 | None:intergenic | 50.0% | |
CCTTGGGAACAACATCACCT+CGG | + | chr1.3:72562205-72562224 | None:intergenic | 50.0% | |
CTGATGATCGTTCAGGGGAA+AGG | + | chr1.3:72559309-72559328 | None:intergenic | 50.0% | |
GACAGCAGCATTCACATCCT+TGG | + | chr1.3:72562222-72562241 | None:intergenic | 50.0% | |
GCTGTGCAACAATCTTGCAC+AGG | - | chr1.3:72559649-72559668 | MS.gene91342:intron | 50.0% | |
GGTTAAAATGACCCGGTTGG+AGG | + | chr1.3:72560173-72560192 | None:intergenic | 50.0% | |
GTATGGCTCAACAACAGAGG+TGG | + | chr1.3:72561662-72561681 | None:intergenic | 50.0% | |
GTGACCTTGCTAAGGTACAG+AGG | - | chr1.3:72562342-72562361 | MS.gene91342:intron | 50.0% | |
GTGGAGAGGACACTGTTGTA+TGG | + | chr1.3:72561679-72561698 | None:intergenic | 50.0% | |
GTTATCGATGAGGTGAGGAC+TGG | - | chr1.3:72561250-72561269 | MS.gene91342:intron | 50.0% | |
GTTCACTGGTATGTGGGTGA+GGG | - | chr1.3:72562458-72562477 | MS.gene91342:intron | 50.0% | |
TACTGTCTCGAACACGGCAT+CGG | - | chr1.3:72557554-72557573 | MS.gene91342:CDS | 50.0% | |
TCACCACCAGGAACAACAGT+AGG | + | chr1.3:72562326-72562345 | None:intergenic | 50.0% | |
TCAGGTCGGAAATGCTTGCT+GGG | - | chr1.3:72557526-72557545 | MS.gene91342:CDS | 50.0% | |
TGAGCCCACTGTTATCGATG+AGG | - | chr1.3:72561240-72561259 | MS.gene91342:intron | 50.0% | |
TGAGGGCGGTGATGAAGATA+TGG | - | chr1.3:72562565-72562584 | MS.gene91342:CDS | 50.0% | |
TGTTCACTGGTATGTGGGTG+AGG | - | chr1.3:72562457-72562476 | MS.gene91342:intron | 50.0% | |
TTCAGGTCGGAAATGCTTGC+TGG | - | chr1.3:72557525-72557544 | MS.gene91342:CDS | 50.0% | |
! | ACAAGTGTGGCTGAGGTGTT+TGG | - | chr1.3:72562389-72562408 | MS.gene91342:intron | 50.0% |
! | CAGTCTTGTCACTCGGCATT+TGG | + | chr1.3:72561135-72561154 | None:intergenic | 50.0% |
! | CCTCCAACAGTCTTGTCACT+CGG | + | chr1.3:72561142-72561161 | None:intergenic | 50.0% |
! | CGGGTTTCACTGGTCTGAAA+AGG | + | chr1.3:72560195-72560214 | None:intergenic | 50.0% |
! | GATAACTGCACTGGTCTCCA+AGG | - | chr1.3:72561505-72561524 | MS.gene91342:intron | 50.0% |
! | TCTGGGATATGGGACCAAGT+TGG | + | chr1.3:72562018-72562037 | None:intergenic | 50.0% |
!! | CACTGGTCTCCAAGGGTTTT+TGG | - | chr1.3:72561513-72561532 | MS.gene91342:intron | 50.0% |
!! | GATATGGGACCAAGTTGGTC+TGG | + | chr1.3:72562013-72562032 | None:intergenic | 50.0% |
!! | GCTTGCTGTTTGATGTACCG+AGG | - | chr1.3:72562185-72562204 | MS.gene91342:intron | 50.0% |
!! | TGCCCTACTGGTTTCAAGTG+TGG | - | chr1.3:72562284-72562303 | MS.gene91342:intron | 50.0% |
!! | TGGGTCGCATGGGTTTTAAC+TGG | - | chr1.3:72558911-72558930 | MS.gene91342:CDS | 50.0% |
!! | TTTGTGGATTGGTGCCCTAC+TGG | - | chr1.3:72562272-72562291 | MS.gene91342:intron | 50.0% |
!!! | GGGTCGCATGGGTTTTAACT+GGG | - | chr1.3:72558912-72558931 | MS.gene91342:CDS | 50.0% |
ACCACGGGCAAAGTTGTTGG+CGG | + | chr1.3:72561329-72561348 | None:intergenic | 55.0% | |
ACCTTAGCAAGGTCACCACC+AGG | + | chr1.3:72562338-72562357 | None:intergenic | 55.0% | |
AGCACCAGTCTCGCTGAAGA+AGG | + | chr1.3:72561185-72561204 | None:intergenic | 55.0% | |
AGGATGGAAGAGCTGGCGAT+AGG | + | chr1.3:72561278-72561297 | None:intergenic | 55.0% | |
AGTGTGCTCCAAGAGGGAGT+GGG | + | chr1.3:72561701-72561720 | None:intergenic | 55.0% | |
CACTGATGAGCTGCTCAGGA+TGG | + | chr1.3:72561294-72561313 | None:intergenic | 55.0% | |
CAGCCACCTACTGTTGTTCC+TGG | - | chr1.3:72562317-72562336 | MS.gene91342:intron | 55.0% | |
CATCCTGAGCAGCTCATCAG+TGG | - | chr1.3:72561292-72561311 | MS.gene91342:intron | 55.0% | |
CCACCAGGAACAACAGTAGG+TGG | + | chr1.3:72562323-72562342 | None:intergenic | 55.0% | |
CCACCTACTGTTGTTCCTGG+TGG | - | chr1.3:72562320-72562339 | MS.gene91342:intron | 55.0% | |
CCGAGGTGATGTTGTTCCCA+AGG | - | chr1.3:72562202-72562221 | MS.gene91342:intron | 55.0% | |
CCGAGTGACAAGACTGTTGG+AGG | - | chr1.3:72561139-72561158 | MS.gene91342:intron | 55.0% | |
CTGCCCTCTGTACCTTAGCA+AGG | + | chr1.3:72562349-72562368 | None:intergenic | 55.0% | |
CTGGTATGTGGGTGAGGGTA+TGG | - | chr1.3:72562463-72562482 | MS.gene91342:intron | 55.0% | |
GCCATGTACTTTCCATGGCG+AGG | + | chr1.3:72562167-72562186 | None:intergenic | 55.0% | |
GGACCGCATCAGAAAGCTTG+CGG | - | chr1.3:72561483-72561502 | MS.gene91342:intron | 55.0% | |
GGTCAAGCCGGTATTCAGGT+CGG | - | chr1.3:72557512-72557531 | MS.gene91342:CDS | 55.0% | |
GTCGTCTTCAACCTCCAACC+GGG | - | chr1.3:72560159-72560178 | MS.gene91342:intron | 55.0% | |
TACTGTCTATCCCTCCCCTC+AGG | - | chr1.3:72561633-72561652 | MS.gene91342:intron | 55.0% | |
TCACTCGGCATTTGGCCATC+AGG | + | chr1.3:72561127-72561146 | None:intergenic | 55.0% | |
TTCTTCAGCGAGACTGGTGC+TGG | - | chr1.3:72561184-72561203 | MS.gene91342:intron | 55.0% | |
TTGCCACTGATGAGCTGCTC+AGG | + | chr1.3:72561298-72561317 | None:intergenic | 55.0% | |
! | CCCTCGCCATGGAAAGTACA+TGG | - | chr1.3:72562163-72562182 | MS.gene91342:intron | 55.0% |
! | CCGTGAGGATCTTGCTGCTT+TGG | - | chr1.3:72562508-72562527 | MS.gene91342:CDS | 55.0% |
! | GTGGGTGAGGGTATGGAAGA+AGG | - | chr1.3:72562470-72562489 | MS.gene91342:intron | 55.0% |
! | GTTGGAGGAGGAACTGGTTC+TGG | - | chr1.3:72561547-72561566 | MS.gene91342:intron | 55.0% |
! | TCCTGGTGGTGACCTTGCTA+AGG | - | chr1.3:72562334-72562353 | MS.gene91342:intron | 55.0% |
!! | GAAGAAGTTGGTGCCGAGTC+TGG | - | chr1.3:72562542-72562561 | MS.gene91342:CDS | 55.0% |
!! | GGAGGAACTGGTTCTGGTCT+TGG | - | chr1.3:72561553-72561572 | MS.gene91342:intron | 55.0% |
AGAGGTGGAAACCTGAGGGG+AGG | + | chr1.3:72561647-72561666 | None:intergenic | 60.0% | |
ATCACCGCCCTCACCAGACT+CGG | + | chr1.3:72562558-72562577 | None:intergenic | 60.0% | |
CAGTGTGCTCCAAGAGGGAG+TGG | + | chr1.3:72561702-72561721 | None:intergenic | 60.0% | |
GAGGTGGAAACCTGAGGGGA+GGG | + | chr1.3:72561646-72561665 | None:intergenic | 60.0% | |
GCTAAGTGTGACCCTCGCCA+TGG | - | chr1.3:72562152-72562171 | MS.gene91342:intron | 60.0% | |
GCTGCTCAGGATGGAAGAGC+TGG | + | chr1.3:72561285-72561304 | None:intergenic | 60.0% | |
!! | AGTTGGTGCCGAGTCTGGTG+AGG | - | chr1.3:72562547-72562566 | MS.gene91342:CDS | 60.0% |
!! | GTTGGTGCCGAGTCTGGTGA+GGG | - | chr1.3:72562548-72562567 | MS.gene91342:CDS | 60.0% |
CCAAGAGGGAGTGGGTGGAG+AGG | + | chr1.3:72561693-72561712 | None:intergenic | 65.0% | |
CCTCTCCACCCACTCCCTCT+TGG | - | chr1.3:72561690-72561709 | MS.gene91342:intron | 65.0% | |
GCCGCCAACAACTTTGCCCG+TGG | - | chr1.3:72561325-72561344 | MS.gene91342:intron | 65.0% | |
GTGCTCCAAGAGGGAGTGGG+TGG | + | chr1.3:72561698-72561717 | None:intergenic | 65.0% | |
! | GGTGCCGAGTCTGGTGAGGG+CGG | - | chr1.3:72562551-72562570 | MS.gene91342:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 72557485 | 72562598 | 72557485 | ID=MS.gene91342 |
chr1.3 | mRNA | 72557485 | 72562598 | 72557485 | ID=MS.gene91342.t1;Parent=MS.gene91342 |
chr1.3 | exon | 72562506 | 72562598 | 72562506 | ID=MS.gene91342.t1.exon1;Parent=MS.gene91342.t1 |
chr1.3 | CDS | 72562506 | 72562598 | 72562506 | ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1 |
chr1.3 | exon | 72558725 | 72558959 | 72558725 | ID=MS.gene91342.t1.exon2;Parent=MS.gene91342.t1 |
chr1.3 | CDS | 72558725 | 72558959 | 72558725 | ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1 |
chr1.3 | exon | 72558258 | 72558628 | 72558258 | ID=MS.gene91342.t1.exon3;Parent=MS.gene91342.t1 |
chr1.3 | CDS | 72558258 | 72558628 | 72558258 | ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1 |
chr1.3 | exon | 72557485 | 72558138 | 72557485 | ID=MS.gene91342.t1.exon4;Parent=MS.gene91342.t1 |
chr1.3 | CDS | 72557485 | 72558138 | 72557485 | ID=cds.MS.gene91342.t1;Parent=MS.gene91342.t1 |
Gene Sequence |
Protein sequence |