AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060714


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060714.t1 MTR_1g049120 93.424 958 43 1 1 958 1 938 0.0 1816
MS.gene060714.t1 MTR_4g036445 59.729 591 174 9 73 604 33 618 0.0 667
MS.gene060714.t1 MTR_1g072780 54.626 681 243 15 303 958 355 994 0.0 656
MS.gene060714.t1 MTR_2g047912 62.611 452 105 10 494 932 272 672 1.69e-164 498
MS.gene060714.t1 MTR_2g047912 39.016 305 115 8 1 266 1 273 1.47e-35 145
MS.gene060714.t1 MTR_2g104120 30.673 639 354 16 310 929 258 826 1.44e-83 288
MS.gene060714.t1 MTR_1g066890 31.934 667 345 19 301 929 307 902 9.06e-83 287
MS.gene060714.t1 MTR_2g104980 54.369 103 46 1 310 412 233 334 1.49e-34 138
MS.gene060714.t1 MTR_6g005840 28.000 450 266 16 92 493 14 453 1.14e-26 117
MS.gene060714.t1 MTR_6g005840 27.924 419 243 16 114 493 13 411 2.17e-26 117
MS.gene060714.t1 MTR_6g005960 35.233 193 121 4 306 497 208 397 2.70e-25 112
MS.gene060714.t1 MTR_7g113180 32.432 185 109 4 310 485 87 264 6.12e-24 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060714.t1 AT3G09670 37.371 388 191 12 309 646 196 581 5.96e-62 224
MS.gene060714.t1 AT3G09670 37.371 388 191 12 309 646 196 581 5.96e-62 224
MS.gene060714.t1 AT5G02950 40.000 280 137 8 313 584 98 354 4.21e-55 203
MS.gene060714.t1 AT5G02950 53.846 78 36 0 850 927 546 623 7.25e-18 89.0
MS.gene060714.t1 AT5G02950 40.000 280 137 8 313 584 98 354 4.21e-55 203
MS.gene060714.t1 AT5G02950 53.846 78 36 0 850 927 546 623 7.25e-18 89.0
MS.gene060714.t1 AT3G54760 37.500 344 137 8 598 934 470 742 2.49e-53 200
MS.gene060714.t1 AT3G54760 37.500 344 137 8 598 934 501 773 4.81e-53 199
MS.gene060714.t1 AT5G40340 36.041 197 117 6 310 501 125 317 1.22e-25 114
MS.gene060714.t1 AT5G40340 36.041 197 117 6 310 501 125 317 1.32e-25 114
MS.gene060714.t1 AT5G27650 33.702 181 112 5 310 485 171 348 9.39e-24 108
MS.gene060714.t1 AT3G05430 33.520 179 115 4 310 485 133 310 3.70e-22 103
MS.gene060714.t1 AT3G05430 33.520 179 115 4 310 485 133 310 3.83e-22 103
MS.gene060714.t1 AT3G27860 28.333 300 178 14 304 593 55 327 2.51e-15 80.9
MS.gene060714.t1 AT3G27860 28.333 300 178 14 304 593 55 327 2.51e-15 80.9

Find 209 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTATTTCGTTGCATATTT+TGG 0.018484 1.3:+31628998 MS.gene060714:CDS
CCTCCACAATGTTGTATTTC+TGG 0.135555 1.3:-31629433 None:intergenic
GCTAAGAAGTTCAACATATT+TGG 0.166046 1.3:+31630684 MS.gene060714:CDS
AACAAAATGTTTAAGCGTTT+TGG 0.179710 1.3:+31630564 MS.gene060714:CDS
GACCATATTAACTTCAAAAT+TGG 0.197232 1.3:-31630808 None:intergenic
TTCTCTCTCAGATATGGTTT+GGG 0.239508 1.3:+31628886 MS.gene060714:CDS
TCTTCAAATTCAAATGTTTC+AGG 0.243949 1.3:-31630183 None:intergenic
TTTGTTAAGGTTTGCTTCTA+AGG 0.244285 1.3:-31630547 None:intergenic
GTCTCAAGACGAGTCGAATA+TGG 0.258530 1.3:+31629148 MS.gene060714:CDS
GGTGATTCTGTTGGGGTAGT+TGG 0.264248 1.3:+31627949 MS.gene060714:CDS
TACGGCTGGCTTTGATCGTT+TGG 0.305489 1.3:+31629348 MS.gene060714:CDS
TTTCTCTCTCAGATATGGTT+TGG 0.312975 1.3:+31628885 MS.gene060714:CDS
TGAGTTGGGTAACGTTGTTT+TGG 0.316781 1.3:+31628047 MS.gene060714:CDS
AATCACACCGCGGAGATTAA+AGG 0.319150 1.3:+31628459 MS.gene060714:CDS
GTGACCCAGTTCCAACTATT+GGG 0.320240 1.3:-31630161 None:intergenic
GGTGACCCAGTTCCAACTAT+TGG 0.324538 1.3:-31630162 None:intergenic
GACACATCTGATTCATTATC+AGG 0.324654 1.3:-31629916 None:intergenic
CGATTAACTTGGGCTGGCTT+TGG 0.335599 1.3:-31630396 None:intergenic
CCCAAAATATGCAACGAAAT+AGG 0.337444 1.3:-31628999 None:intergenic
TCAGGTGAAACCAGATTATC+TGG 0.347288 1.3:-31629664 None:intergenic
GGTGACTTGGTAGCTGGCTT+TGG 0.349758 1.3:-31630375 None:intergenic
ATCATGTCATAGGTGTCTTT+AGG 0.355766 1.3:-31629190 None:intergenic
AGTATCCGGTTGAGGAATCT+AGG 0.358039 1.3:+31627980 MS.gene060714:CDS
TGGTTTGTGGTGATTCTGTT+GGG 0.360124 1.3:+31627941 MS.gene060714:CDS
GGCTTTGGTGACTTGGTAGC+TGG 0.361549 1.3:-31630381 None:intergenic
AAGATATGAGCGACACATAT+TGG 0.375633 1.3:+31630202 MS.gene060714:CDS
AACAATCGGTGACTTCAATA+TGG 0.380581 1.3:+31628119 MS.gene060714:CDS
CCATCACCATCAGGAGAATC+TGG 0.383648 1.3:-31629634 None:intergenic
AGAAGTCACCCATGGTGGCC+TGG 0.392403 1.3:+31628917 MS.gene060714:CDS
CGGATACATTTGGTATTAAG+AGG 0.392876 1.3:+31630130 MS.gene060714:CDS
GGTGACTTAACAGCTGGCTT+TGG 0.393998 1.3:-31630354 None:intergenic
TTCCGTGATGGTTGTTGCAC+TGG 0.394785 1.3:-31630291 None:intergenic
AATCTCCGCGGTGTGATTCA+CGG 0.396914 1.3:-31628454 None:intergenic
AGAGATCGAAAACCATTTCC+TGG 0.398045 1.3:-31630785 None:intergenic
CCCAACTGATGAGGATGATC+AGG 0.400132 1.3:+31629942 MS.gene060714:CDS
CACATACCACAGACCCATCT+AGG 0.400940 1.3:-31627903 None:intergenic
TCACTGCGTCACCTTCTATA+AGG 0.403119 1.3:+31629842 MS.gene060714:CDS
TAGATGGGTCTGTGGTATGT+GGG 0.406634 1.3:+31627905 MS.gene060714:CDS
TTGGGCTGGCTTTGGTGACT+TGG 0.409137 1.3:-31630388 None:intergenic
TACAATCGGTGACTTTAGTA+TGG 0.412273 1.3:+31628188 MS.gene060714:CDS
TGTGAGCGGTGTTTCTGCTT+TGG 0.414830 1.3:+31628356 MS.gene060714:CDS
TCTGTTTCAGATTCCTTAAG+TGG 0.417444 1.3:-31630588 None:intergenic
CTGTAGTTGTGGCTGCTGAT+TGG 0.424377 1.3:+31630091 MS.gene060714:CDS
GGCTTTGGTGACTTAACAGC+TGG 0.426756 1.3:-31630360 None:intergenic
GAAGTCACCCATGGTGGCCT+GGG 0.429264 1.3:+31628918 MS.gene060714:CDS
GCCGCAGTAGTTGGTAGTAC+AGG 0.435426 1.3:+31628156 MS.gene060714:CDS
ATTCTGTTGGGGTAGTTGGT+GGG 0.439002 1.3:+31627953 MS.gene060714:CDS
TCAAAGTCTCCATCTGCCTT+TGG 0.439286 1.3:-31629886 None:intergenic
ACAAAGTCATCGTTTAAAAT+CGG 0.439705 1.3:+31629790 MS.gene060714:CDS
GCAACGGTGCATGGCTCCCT+TGG 0.441735 1.3:-31628676 None:intergenic
GTGGTTTGTGGTGATTCTGT+TGG 0.443493 1.3:+31627940 MS.gene060714:CDS
CTAGATGGGTCTGTGGTATG+TGG 0.448465 1.3:+31627904 MS.gene060714:CDS
TTCCATCGCGCAACGGTGCA+TGG 0.449140 1.3:-31628685 None:intergenic
TGGTCGGACTCCAGATAATC+TGG 0.450902 1.3:+31629654 MS.gene060714:CDS
CAAGGAGTCAAATGGTGGTC+AGG 0.451976 1.3:+31628721 MS.gene060714:CDS
GTGAGAGATGAAGCAGTAGT+TGG 0.452544 1.3:+31628078 MS.gene060714:CDS
CTAGAACACTTCCTTATAGA+AGG 0.452692 1.3:-31629853 None:intergenic
GTTGGTGGTGAAACCCTAGA+TGG 0.452873 1.3:+31627889 MS.gene060714:CDS
GCTTTAGCAGGTAGTTCTGT+AGG 0.454456 1.3:+31628264 MS.gene060714:CDS
CACCTGAACATTCCAAGAAA+AGG 0.455137 1.3:+31629680 MS.gene060714:CDS
AGTTGGTGGGACCGAGTATC+CGG 0.455528 1.3:+31627966 MS.gene060714:CDS
GATTCTGTTGGGGTAGTTGG+TGG 0.455837 1.3:+31627952 MS.gene060714:CDS
TAGTTCAGAAATAGTTCATC+AGG 0.456384 1.3:+31628823 MS.gene060714:CDS
TTCTGTTCGTGCAGGTTCGT+CGG 0.457233 1.3:+31628586 MS.gene060714:intron
TGCACTGGTTTCTGTTGCGC+TGG 0.460959 1.3:-31630261 None:intergenic
GGCTTACGATTAACTTGGGC+TGG 0.461800 1.3:-31630402 None:intergenic
AATCTGGAGTCCCATTCATT+AGG 0.464940 1.3:-31629618 None:intergenic
TATAGGGCTTACGATTAACT+TGG 0.466075 1.3:-31630407 None:intergenic
TATCTTGTGATCTGCGGCCT+CGG 0.467878 1.3:-31628220 None:intergenic
AAAGCGTAAATATAAGTTCA+AGG 0.468189 1.3:+31629555 MS.gene060714:CDS
TATTGAGACTGAGGAAAACT+TGG 0.469804 1.3:+31628613 MS.gene060714:CDS
TTTGGTGACTTAGCAGAGAC+TGG 0.474173 1.3:-31630336 None:intergenic
TCTTAAAGACCACTCTTGCC+CGG 0.475118 1.3:-31630629 None:intergenic
CTCCATCTGCCTTTGGAGAT+CGG 0.475922 1.3:-31629879 None:intergenic
AATCGGTGATTGTATTCGTC+GGG 0.480709 1.3:+31629807 MS.gene060714:CDS
GAGTGCTATTAATTGTGCTT+TGG 0.482515 1.3:+31629120 MS.gene060714:CDS
ACAACCCTAGATTCCTCAAC+CGG 0.485275 1.3:-31627985 None:intergenic
TCTCAAGACGAGTCGAATAT+GGG 0.485338 1.3:+31629149 MS.gene060714:CDS
GCTGCCGAGGCCGCAGTAGT+TGG 0.486116 1.3:+31628147 MS.gene060714:CDS
TCCTGATCATCCTCATCAGT+TGG 0.488623 1.3:-31629943 None:intergenic
GTTGTAGAATTTGAAGAAGC+CGG 0.488694 1.3:+31628003 MS.gene060714:CDS
GCTATCTTCACTTCAGCTTG+TGG 0.491218 1.3:+31629996 MS.gene060714:CDS
GAAGCTTTGAACAGTGCACT+TGG 0.493568 1.3:-31630741 None:intergenic
ACCACCAACTTTCACACCAT+GGG 0.493614 1.3:-31627875 None:intergenic
CATTTCGGAGTCATCGGCGT+AGG 0.493727 1.3:-31629722 None:intergenic
TTGTTAAGGTTTGCTTCTAA+GGG 0.496576 1.3:-31630546 None:intergenic
AGGATGTCAGACCTAATGAA+TGG 0.497931 1.3:+31629607 MS.gene060714:CDS
TGCAACACAAGACCAGGAAA+TGG 0.498131 1.3:+31630773 MS.gene060714:CDS
GGAGTCCGACCATCACCATC+AGG 0.498959 1.3:-31629643 None:intergenic
GAATGCGGCGGCAGTTGAGT+TGG 0.502816 1.3:+31628032 MS.gene060714:CDS
CTTTAGCAGGTAGTTCTGTA+GGG 0.504598 1.3:+31628265 MS.gene060714:CDS
AATGCGGCGGCAGTTGAGTT+GGG 0.505664 1.3:+31628033 MS.gene060714:CDS
ATCTTGCATTTCGGAGTCAT+CGG 0.509912 1.3:-31629728 None:intergenic
TGCACCGTTGCGCGATGGAA+AGG 0.511662 1.3:+31628688 MS.gene060714:CDS
AGATGGGTCTGTGGTATGTG+GGG 0.514040 1.3:+31627906 MS.gene060714:CDS
CACTGTGCATCCATCAAAGA+AGG 0.517034 1.3:+31629579 MS.gene060714:CDS
GGTCATAATGAAGTGGTTTG+TGG 0.517248 1.3:+31627928 MS.gene060714:CDS
ATTCCTATGCTCTTCAATTG+TGG 0.519415 1.3:-31629080 None:intergenic
TTGTAGAATTTGAAGAAGCC+GGG 0.519547 1.3:+31628004 MS.gene060714:CDS
CACTTGGAGTGTAATTAAGC+TGG 0.521123 1.3:-31630725 None:intergenic
TCAGAAAAGTATACTCTCCA+AGG 0.523646 1.3:-31630029 None:intergenic
GCGACACATATTGGACTGAC+AGG 0.524575 1.3:+31630211 MS.gene060714:CDS
CTATCCGAGTTTCCTACGGC+TGG 0.525255 1.3:+31629334 MS.gene060714:CDS
CCTGATCATCCTCATCAGTT+GGG 0.525465 1.3:-31629942 None:intergenic
AAGTTGATAGAGTAAGCAGC+CGG 0.526372 1.3:+31630610 MS.gene060714:CDS
AGCAATGATGATGCTTTAGC+AGG 0.528080 1.3:+31628252 MS.gene060714:CDS
AAAGTCAACAAGGAGTCAAA+TGG 0.528610 1.3:+31628713 MS.gene060714:CDS
ATTTCGGAGTCATCGGCGTA+GGG 0.529828 1.3:-31629721 None:intergenic
TTTCAGAAATTCTGTAGTTG+TGG 0.530415 1.3:+31630080 MS.gene060714:CDS
ACATATTCTATAAGATTCAA+AGG 0.532546 1.3:-31629304 None:intergenic
GGATGTCAGACCTAATGAAT+GGG 0.533475 1.3:+31629608 MS.gene060714:CDS
AGTAAGCAGCCGGGCAAGAG+TGG 0.535181 1.3:+31630620 MS.gene060714:CDS
AAACTAAGAGATAGAAAAGC+CGG 0.536173 1.3:+31628776 MS.gene060714:CDS
AGATTCCTCAACCGGATACT+CGG 0.539506 1.3:-31627977 None:intergenic
CCGCAGTAGTTGGTAGTACA+GGG 0.543637 1.3:+31628157 MS.gene060714:CDS
GACGGATCAAATATCTGCCC+AGG 0.544596 1.3:-31628935 None:intergenic
TTTGGAGCTTGTGACTGCTA+AGG 0.547748 1.3:+31629366 MS.gene060714:CDS
TTGGGGACAAAACATTTGCA+TGG 0.547879 1.3:+31629017 MS.gene060714:CDS
ATTTATTATCTTGTGATCTG+CGG 0.548054 1.3:-31628226 None:intergenic
GTCAGACAGTAGAGAACACC+GGG 0.548651 1.3:+31629218 MS.gene060714:CDS
AAGTTCATAACAAGTTCAGC+AGG 0.549434 1.3:-31630504 None:intergenic
AAACATGCACTTGTGAAGCC+TGG 0.550664 1.3:+31628800 MS.gene060714:CDS
TGCCGCCGCATTCTCACTCC+CGG 0.551666 1.3:-31628022 None:intergenic
TCTCTCTCAGATATGGTTTG+GGG 0.553140 1.3:+31628887 MS.gene060714:CDS
AGCCATGCACCGTTGCGCGA+TGG 0.555384 1.3:+31628683 MS.gene060714:CDS
AACACTATCCGAGTTTCCTA+CGG 0.556285 1.3:+31629330 MS.gene060714:CDS
CACCACCAACTTTCACACCA+TGG 0.558331 1.3:-31627876 None:intergenic
GCCCTCTCAGATGCATCTGA+CGG 0.559014 1.3:-31628953 None:intergenic
CCAGATTCTCCTGATGGTGA+TGG 0.559245 1.3:+31629634 MS.gene060714:CDS
AAATCGGTGATTGTATTCGT+CGG 0.559399 1.3:+31629806 MS.gene060714:CDS
ATGACTCCGAAATGCAAGAT+GGG 0.560146 1.3:+31629731 MS.gene060714:CDS
GACACTCAAGTTACTGACCA+AGG 0.560989 1.3:+31628659 MS.gene060714:CDS
TGGGACCGAGTATCCGGTTG+AGG 0.563199 1.3:+31627972 MS.gene060714:CDS
TGAACTATTTCTGAACTACC+AGG 0.564289 1.3:-31628818 None:intergenic
TGACCCAGTTCCAACTATTG+GGG 0.565841 1.3:-31630160 None:intergenic
ATATCTGCCCAGGCCACCAT+GGG 0.565877 1.3:-31628925 None:intergenic
CAATATGGTGGATGCTGCCG+AGG 0.567224 1.3:+31628134 MS.gene060714:CDS
GATGACTCCGAAATGCAAGA+TGG 0.571916 1.3:+31629730 MS.gene060714:CDS
CAGAAAAGTATACTCTCCAA+GGG 0.576757 1.3:-31630028 None:intergenic
ACTTATTTCTTGTTGAACCC+CGG 0.576846 1.3:-31629236 None:intergenic
GACCGATCTCCAAAGGCAGA+TGG 0.577314 1.3:+31629877 MS.gene060714:CDS
AAAGCCAGCCGTAGGAAACT+CGG 0.577817 1.3:-31629338 None:intergenic
AATAAGTATCACACATGGGG+TGG 0.580958 1.3:+31629252 MS.gene060714:CDS
CCTTGAAAAGTGCAACTCAA+AGG 0.582951 1.3:+31628311 MS.gene060714:CDS
GGGACTCCAGATTCTCCTGA+TGG 0.585166 1.3:+31629628 MS.gene060714:CDS
ACAGTTGTCGAAACAACAAT+CGG 0.585549 1.3:+31628105 MS.gene060714:CDS
TTCTAGTGACCGATCTCCAA+AGG 0.585712 1.3:+31629870 MS.gene060714:CDS
GGTTTGTGGTGATTCTGTTG+GGG 0.587388 1.3:+31627942 MS.gene060714:CDS
TGTTGATGCAACACAAGACC+AGG 0.588104 1.3:+31630767 MS.gene060714:CDS
AATATCTGCCCAGGCCACCA+TGG 0.588370 1.3:-31628926 None:intergenic
TTCTGAAAGCAATCCTGCCG+AGG 0.588705 1.3:+31630443 MS.gene060714:CDS
TCTCCACAATTGAAGAGCAT+AGG 0.596184 1.3:+31629077 MS.gene060714:CDS
ACTACCAACTACTGCGGCCT+CGG 0.596716 1.3:-31628151 None:intergenic
GTGACCCATGGTGTGAAAGT+TGG 0.597666 1.3:+31627871 MS.gene060714:CDS
TAGTATGGTGGATGCTGCCG+AGG 0.597990 1.3:+31628203 MS.gene060714:CDS
ACAGGGGTCGAAACTACAAT+CGG 0.598602 1.3:+31628174 MS.gene060714:CDS
GTATCCGGTTGAGGAATCTA+GGG 0.602732 1.3:+31627981 MS.gene060714:CDS
ACATACCACAGACCCATCTA+GGG 0.603316 1.3:-31627902 None:intergenic
AAGCACAATTAATAGCACTC+TGG 0.605736 1.3:-31629117 None:intergenic
CAAGAAATAAGTATCACACA+TGG 0.606499 1.3:+31629247 MS.gene060714:CDS
AAGAAATAAGTATCACACAT+GGG 0.606954 1.3:+31629248 MS.gene060714:CDS
ATAGGGCTTACGATTAACTT+GGG 0.608401 1.3:-31630406 None:intergenic
ACCCATGGTGTGAAAGTTGG+TGG 0.609319 1.3:+31627874 MS.gene060714:CDS
ACATTGTGGAGGTGTTGACC+CGG 0.610706 1.3:+31629444 MS.gene060714:CDS
ATTCTCCTGATGGTGATGGT+CGG 0.611694 1.3:+31629638 MS.gene060714:CDS
AATCGGTGACTTCAATATGG+TGG 0.618929 1.3:+31628122 MS.gene060714:CDS
TAAGGGAACAGAATTGAGCT+CGG 0.619176 1.3:-31630529 None:intergenic
TAAGAAATGTGTAGATGCAG+AGG 0.619624 1.3:+31630647 MS.gene060714:CDS
CTTCTTACCTTTAATCTCCG+CGG 0.620007 1.3:-31628466 None:intergenic
AATCGGTGACTTTAGTATGG+TGG 0.621137 1.3:+31628191 MS.gene060714:CDS
TCCGTCAGATGCATCTGAGA+GGG 0.624122 1.3:+31628952 MS.gene060714:CDS
AGTTGATAGAGTAAGCAGCC+GGG 0.624544 1.3:+31630611 MS.gene060714:CDS
AACCAGTGCAACAACCATCA+CGG 0.625880 1.3:+31630289 MS.gene060714:CDS
TGTGTCTCTCCCAACTGATG+AGG 0.631262 1.3:+31629933 MS.gene060714:CDS
AAACGATCAAAGCCAGCCGT+AGG 0.635310 1.3:-31629346 None:intergenic
TTGGTGGTGAAACCCTAGAT+GGG 0.636238 1.3:+31627890 MS.gene060714:CDS
GATGGGTCTGTGGTATGTGG+GGG 0.641914 1.3:+31627907 MS.gene060714:CDS
GCATTGTCATCTATATAACC+AGG 0.644206 1.3:-31630480 None:intergenic
CTTGTGGCACAAGAACCCCT+TGG 0.646167 1.3:+31630012 MS.gene060714:CDS
GTCGGTGTCTATTGAGACTG+AGG 0.648701 1.3:+31628604 MS.gene060714:CDS
ATCCGTCAGATGCATCTGAG+AGG 0.653593 1.3:+31628951 MS.gene060714:CDS
GACCCAGTTCCAACTATTGG+GGG 0.653992 1.3:-31630159 None:intergenic
GTCAACAAGGAGTCAAATGG+TGG 0.655524 1.3:+31628716 MS.gene060714:CDS
TTTAGCAGGTAGTTCTGTAG+GGG 0.655647 1.3:+31628266 MS.gene060714:CDS
CGTGAGGAGATGCAAATAGA+CGG 0.660655 1.3:+31628399 MS.gene060714:CDS
AGAAATAAGTATCACACATG+GGG 0.660741 1.3:+31629249 MS.gene060714:CDS
GCAAAGTGAGAAGTCACCCA+TGG 0.661126 1.3:+31628909 MS.gene060714:CDS
AGAAGCCGGGAGTGAGAATG+CGG 0.661274 1.3:+31628017 MS.gene060714:CDS
ACACTCAAGTTACTGACCAA+GGG 0.665022 1.3:+31628660 MS.gene060714:CDS
AGTCAGACAGTAGAGAACAC+CGG 0.667248 1.3:+31629217 MS.gene060714:CDS
CGACACATATTGGACTGACA+GGG 0.669789 1.3:+31630212 MS.gene060714:CDS
AGCCGGGAGTGAGAATGCGG+CGG 0.674067 1.3:+31628020 MS.gene060714:CDS
ACTGACAGGGTCATTGACAA+TGG 0.674175 1.3:+31630225 MS.gene060714:CDS
TCAGAAACCACTGTGACCCA+TGG 0.675916 1.3:+31627859 MS.gene060714:CDS
AAGTGAGAAGTCACCCATGG+TGG 0.677906 1.3:+31628912 MS.gene060714:CDS
TGAAACCCTAGATGGGTCTG+TGG 0.684006 1.3:+31627897 MS.gene060714:CDS
TCAACAATCTGATGTACGTG+AGG 0.685189 1.3:+31628383 MS.gene060714:CDS
TTTCACACCATGGGTCACAG+TGG 0.691236 1.3:-31627866 None:intergenic
CGCAGTAGTTGGTAGTACAG+GGG 0.698998 1.3:+31628158 MS.gene060714:CDS
TTGCCAGAAATACAACATTG+TGG 0.702327 1.3:+31629430 MS.gene060714:CDS
TTGTCATCTATATAACCAGG+AGG 0.713037 1.3:-31630477 None:intergenic
CCAGAAATACAACATTGTGG+AGG 0.718025 1.3:+31629433 MS.gene060714:CDS
TAGACGGTGAAGATCAACAA+GGG 0.719756 1.3:+31628415 MS.gene060714:CDS
AGAAAAGTATACTCTCCAAG+GGG 0.750501 1.3:-31630027 None:intergenic
CCCTGTACTACCAACTACTG+CGG 0.751957 1.3:-31628157 None:intergenic
ATAGCTGACAACGATGTGAG+CGG 0.753803 1.3:+31628342 MS.gene060714:CDS
ATAGACGGTGAAGATCAACA+AGG 0.790484 1.3:+31628414 MS.gene060714:CDS
TGAAACCGTGAATCACACCG+CGG 0.851006 1.3:+31628449 MS.gene060714:CDS
TCAGACAGTAGAGAACACCG+GGG 0.900900 1.3:+31629219 MS.gene060714:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATATTCTATAAGATTCAA+AGG - chr1.3:31629307-31629326 None:intergenic 20.0%
!! ATTGAAAAAGTTAATGAAGT+TGG + chr1.3:31628746-31628765 MS.gene060714:CDS 20.0%
!! TTGAAAAAGTTAATGAAGTT+GGG + chr1.3:31628747-31628766 MS.gene060714:CDS 20.0%
!!! AGAATTTTTTTTCTTGGTAT+AGG - chr1.3:31630427-31630446 None:intergenic 20.0%
!!! GAATTTTTTTTCTTGGTATA+GGG - chr1.3:31630426-31630445 None:intergenic 20.0%
! AAAGCGTAAATATAAGTTCA+AGG + chr1.3:31629555-31629574 MS.gene060714:CDS 25.0%
! AAGAAATAAGTATCACACAT+GGG + chr1.3:31629248-31629267 MS.gene060714:CDS 25.0%
! ATTTATTATCTTGTGATCTG+CGG - chr1.3:31628229-31628248 None:intergenic 25.0%
! GACCATATTAACTTCAAAAT+TGG - chr1.3:31630811-31630830 None:intergenic 25.0%
! TCTTCAAATTCAAATGTTTC+AGG - chr1.3:31630186-31630205 None:intergenic 25.0%
!! AACAAAATGTTTAAGCGTTT+TGG + chr1.3:31630564-31630583 MS.gene060714:CDS 25.0%
!! AACGCTTAAACATTTTGTTA+AGG - chr1.3:31630563-31630582 None:intergenic 25.0%
!! ACAAAGTCATCGTTTAAAAT+CGG + chr1.3:31629790-31629809 MS.gene060714:CDS 25.0%
!! ACTTATATTTACGCTTTTGA+CGG - chr1.3:31629552-31629571 None:intergenic 25.0%
!!! ATCTAAGCTAAAGCATTTTA+GGG + chr1.3:31629048-31629067 MS.gene060714:CDS 25.0%
!!! CTCCAATTTTGAAGTTAATA+TGG + chr1.3:31630806-31630825 MS.gene060714:CDS 25.0%
!!! CTTGCTTTTAATCGTTTTAA+GGG + chr1.3:31629397-31629416 MS.gene060714:CDS 25.0%
!!! GCTTTCAGAATTTTTTTTCT+TGG - chr1.3:31630433-31630452 None:intergenic 25.0%
AAACTAAGAGATAGAAAAGC+CGG + chr1.3:31628776-31628795 MS.gene060714:CDS 30.0%
AGAAATAAGTATCACACATG+GGG + chr1.3:31629249-31629268 MS.gene060714:CDS 30.0%
ATCCATCAAAGAAGGAAAAA+AGG + chr1.3:31629587-31629606 MS.gene060714:CDS 30.0%
CAAGAAATAAGTATCACACA+TGG + chr1.3:31629247-31629266 MS.gene060714:CDS 30.0%
CATCGTCAACAAAAAATGAA+TGG - chr1.3:31629471-31629490 None:intergenic 30.0%
GCTAAGAAGTTCAACATATT+TGG + chr1.3:31630684-31630703 MS.gene060714:CDS 30.0%
GGAAAAAACACCAATGAAAT+CGG - chr1.3:31628499-31628518 None:intergenic 30.0%
TAGTTCAGAAATAGTTCATC+AGG + chr1.3:31628823-31628842 MS.gene060714:CDS 30.0%
TCAACAAAAAATGAATGGTC+CGG - chr1.3:31629466-31629485 None:intergenic 30.0%
TTTCAGAAATTCTGTAGTTG+TGG + chr1.3:31630080-31630099 MS.gene060714:CDS 30.0%
! ATTTTACGTACGGATACATT+TGG + chr1.3:31630120-31630139 MS.gene060714:CDS 30.0%
! CCTATTTCGTTGCATATTTT+GGG + chr1.3:31628999-31629018 MS.gene060714:CDS 30.0%
! CTATTTCGTTGCATATTTTG+GGG + chr1.3:31629000-31629019 MS.gene060714:CDS 30.0%
! CTGACTTTTAATCATGTCAT+AGG - chr1.3:31629203-31629222 None:intergenic 30.0%
! CTTATATTTACGCTTTTGAC+GGG - chr1.3:31629551-31629570 None:intergenic 30.0%
! GATTTTAAACGATGACTTTG+TGG - chr1.3:31629791-31629810 None:intergenic 30.0%
! TATATAACCAGGAGGTTTTT+CGG - chr1.3:31630472-31630491 None:intergenic 30.0%
! TCCTATTTCGTTGCATATTT+TGG + chr1.3:31628998-31629017 MS.gene060714:CDS 30.0%
! TTGGAAAGAGATTTTACGTA+CGG + chr1.3:31630110-31630129 MS.gene060714:CDS 30.0%
! TTGTTAAGGTTTGCTTCTAA+GGG - chr1.3:31630549-31630568 None:intergenic 30.0%
! TTTGTTAAGGTTTGCTTCTA+AGG - chr1.3:31630550-31630569 None:intergenic 30.0%
!! CATCTAAGCTAAAGCATTTT+AGG + chr1.3:31629047-31629066 MS.gene060714:CDS 30.0%
!! GCTTGCTTTTAATCGTTTTA+AGG + chr1.3:31629396-31629415 MS.gene060714:CDS 30.0%
!!! ATCCTTTTTTCCTTCTTTGA+TGG - chr1.3:31629592-31629611 None:intergenic 30.0%
AAAGTCAACAAGGAGTCAAA+TGG + chr1.3:31628713-31628732 MS.gene060714:CDS 35.0%
AAATCGGTGATTGTATTCGT+CGG + chr1.3:31629806-31629825 MS.gene060714:CDS 35.0%
AACAATCGGTGACTTCAATA+TGG + chr1.3:31628119-31628138 MS.gene060714:CDS 35.0%
AAGATATGAGCGACACATAT+TGG + chr1.3:31630202-31630221 MS.gene060714:CDS 35.0%
AAGCACAATTAATAGCACTC+TGG - chr1.3:31629120-31629139 None:intergenic 35.0%
AAGTTCATAACAAGTTCAGC+AGG - chr1.3:31630507-31630526 None:intergenic 35.0%
ACAGTTGTCGAAACAACAAT+CGG + chr1.3:31628105-31628124 MS.gene060714:CDS 35.0%
ATAGGGCTTACGATTAACTT+GGG - chr1.3:31630409-31630428 None:intergenic 35.0%
ATCATGTCATAGGTGTCTTT+AGG - chr1.3:31629193-31629212 None:intergenic 35.0%
ATTCCTATGCTCTTCAATTG+TGG - chr1.3:31629083-31629102 None:intergenic 35.0%
CAACAAAAAATGAATGGTCC+GGG - chr1.3:31629465-31629484 None:intergenic 35.0%
CCCAAAATATGCAACGAAAT+AGG - chr1.3:31629002-31629021 None:intergenic 35.0%
CGGATACATTTGGTATTAAG+AGG + chr1.3:31630130-31630149 MS.gene060714:CDS 35.0%
CTAGAACACTTCCTTATAGA+AGG - chr1.3:31629856-31629875 None:intergenic 35.0%
CTGCCAAAAGAAAAAGAAGA+AGG + chr1.3:31628857-31628876 MS.gene060714:CDS 35.0%
GACACATCTGATTCATTATC+AGG - chr1.3:31629919-31629938 None:intergenic 35.0%
GCAACTCCTGTAGTTAAAAA+AGG + chr1.3:31629520-31629539 MS.gene060714:CDS 35.0%
GCATTGTCATCTATATAACC+AGG - chr1.3:31630483-31630502 None:intergenic 35.0%
GTTGTAGAATTTGAAGAAGC+CGG + chr1.3:31628003-31628022 MS.gene060714:CDS 35.0%
TAAGAAATGTGTAGATGCAG+AGG + chr1.3:31630647-31630666 MS.gene060714:CDS 35.0%
TACAATCGGTGACTTTAGTA+TGG + chr1.3:31628188-31628207 MS.gene060714:CDS 35.0%
TATAGGGCTTACGATTAACT+TGG - chr1.3:31630410-31630429 None:intergenic 35.0%
TATTGAGACTGAGGAAAACT+TGG + chr1.3:31628613-31628632 MS.gene060714:CDS 35.0%
TCTGTTTCAGATTCCTTAAG+TGG - chr1.3:31630591-31630610 None:intergenic 35.0%
TGGAAAGGAAAAAGTCAACA+AGG + chr1.3:31628703-31628722 MS.gene060714:CDS 35.0%
TTCTCTCTCAGATATGGTTT+GGG + chr1.3:31628886-31628905 MS.gene060714:CDS 35.0%
TTGCCAGAAATACAACATTG+TGG + chr1.3:31629430-31629449 MS.gene060714:CDS 35.0%
TTGTAGAATTTGAAGAAGCC+GGG + chr1.3:31628004-31628023 MS.gene060714:CDS 35.0%
TTGTCATCTATATAACCAGG+AGG - chr1.3:31630480-31630499 None:intergenic 35.0%
TTTCTCTCTCAGATATGGTT+TGG + chr1.3:31628885-31628904 MS.gene060714:CDS 35.0%
! ACTTATTTCTTGTTGAACCC+CGG - chr1.3:31629239-31629258 None:intergenic 35.0%
! AGAAAAGTATACTCTCCAAG+GGG - chr1.3:31630030-31630049 None:intergenic 35.0%
! ATATAACCAGGAGGTTTTTC+GGG - chr1.3:31630471-31630490 None:intergenic 35.0%
! CAGAAAAGTATACTCTCCAA+GGG - chr1.3:31630031-31630050 None:intergenic 35.0%
! GAGTGCTATTAATTGTGCTT+TGG + chr1.3:31629120-31629139 MS.gene060714:CDS 35.0%
! TCAGAAAAGTATACTCTCCA+AGG - chr1.3:31630032-31630051 None:intergenic 35.0%
! TCGCCTTCTTCTTTTTCTTT+TGG - chr1.3:31628863-31628882 None:intergenic 35.0%
! TTTTCTCCCATCTTGCATTT+CGG - chr1.3:31629740-31629759 None:intergenic 35.0%
!! AAGATATCTGCCGATTTCAT+TGG + chr1.3:31628486-31628505 MS.gene060714:intron 35.0%
!! GGAGAGTATACTTTTCTGAA+TGG + chr1.3:31630033-31630052 MS.gene060714:CDS 35.0%
!! TGAACTATTTCTGAACTACC+AGG - chr1.3:31628821-31628840 None:intergenic 35.0%
!!! GTGGTTTCTGAAACATTTTC+TGG - chr1.3:31627850-31627869 None:intergenic 35.0%
!!! GTTTTTTCCAGCTTAACTAG+TGG + chr1.3:31628510-31628529 MS.gene060714:intron 35.0%
!!! TTTTTCTGGTTTTTCCGTGA+TGG - chr1.3:31630306-31630325 None:intergenic 35.0%
AACACTATCCGAGTTTCCTA+CGG + chr1.3:31629330-31629349 MS.gene060714:CDS 40.0%
AATAAGTATCACACATGGGG+TGG + chr1.3:31629252-31629271 MS.gene060714:CDS 40.0%
AATCGGTGACTTCAATATGG+TGG + chr1.3:31628122-31628141 MS.gene060714:CDS 40.0%
AATCGGTGACTTTAGTATGG+TGG + chr1.3:31628191-31628210 MS.gene060714:CDS 40.0%
AATCGGTGATTGTATTCGTC+GGG + chr1.3:31629807-31629826 MS.gene060714:CDS 40.0%
ACACTCAAGTTACTGACCAA+GGG + chr1.3:31628660-31628679 MS.gene060714:CDS 40.0%
AGAGATCGAAAACCATTTCC+TGG - chr1.3:31630788-31630807 None:intergenic 40.0%
AGGATGTCAGACCTAATGAA+TGG + chr1.3:31629607-31629626 MS.gene060714:CDS 40.0%
ATAGACGGTGAAGATCAACA+AGG + chr1.3:31628414-31628433 MS.gene060714:CDS 40.0%
ATCTTGCATTTCGGAGTCAT+CGG - chr1.3:31629731-31629750 None:intergenic 40.0%
ATGACTCCGAAATGCAAGAT+GGG + chr1.3:31629731-31629750 MS.gene060714:CDS 40.0%
CAAGTAACCACTAGTTAAGC+TGG - chr1.3:31628520-31628539 None:intergenic 40.0%
CACCTGAACATTCCAAGAAA+AGG + chr1.3:31629680-31629699 MS.gene060714:CDS 40.0%
CACTTGGAGTGTAATTAAGC+TGG - chr1.3:31630728-31630747 None:intergenic 40.0%
CCAGAAATACAACATTGTGG+AGG + chr1.3:31629433-31629452 MS.gene060714:CDS 40.0%
CCTCCACAATGTTGTATTTC+TGG - chr1.3:31629436-31629455 None:intergenic 40.0%
CTTCTTACCTTTAATCTCCG+CGG - chr1.3:31628469-31628488 None:intergenic 40.0%
GGATGTCAGACCTAATGAAT+GGG + chr1.3:31629608-31629627 MS.gene060714:CDS 40.0%
GGTCATAATGAAGTGGTTTG+TGG + chr1.3:31627928-31627947 MS.gene060714:CDS 40.0%
TAAGGGAACAGAATTGAGCT+CGG - chr1.3:31630532-31630551 None:intergenic 40.0%
TAGACGGTGAAGATCAACAA+GGG + chr1.3:31628415-31628434 MS.gene060714:CDS 40.0%
TCAACAATCTGATGTACGTG+AGG + chr1.3:31628383-31628402 MS.gene060714:CDS 40.0%
TCAGGTGAAACCAGATTATC+TGG - chr1.3:31629667-31629686 None:intergenic 40.0%
TCTCAAGACGAGTCGAATAT+GGG + chr1.3:31629149-31629168 MS.gene060714:CDS 40.0%
TCTCTCTCAGATATGGTTTG+GGG + chr1.3:31628887-31628906 MS.gene060714:CDS 40.0%
TTGGGGACAAAACATTTGCA+TGG + chr1.3:31629017-31629036 MS.gene060714:CDS 40.0%
! AATCTGGAGTCCCATTCATT+AGG - chr1.3:31629621-31629640 None:intergenic 40.0%
! AGCAATGATGATGCTTTAGC+AGG + chr1.3:31628252-31628271 MS.gene060714:CDS 40.0%
! CCTTGAAAAGTGCAACTCAA+AGG + chr1.3:31628311-31628330 MS.gene060714:CDS 40.0%
! CGAGTTTTCTCTCTCAGATA+TGG + chr1.3:31628880-31628899 MS.gene060714:CDS 40.0%
! CTCCTTTTCTTGGAATGTTC+AGG - chr1.3:31629685-31629704 None:intergenic 40.0%
! CTTCACAAGTGCATGTTTTC+CGG - chr1.3:31628798-31628817 None:intergenic 40.0%
! CTTTAGCAGGTAGTTCTGTA+GGG + chr1.3:31628265-31628284 MS.gene060714:CDS 40.0%
! TCTCCACAATTGAAGAGCAT+AGG + chr1.3:31629077-31629096 MS.gene060714:CDS 40.0%
! TGGTTTGTGGTGATTCTGTT+GGG + chr1.3:31627941-31627960 MS.gene060714:CDS 40.0%
! TTTAGCAGGTAGTTCTGTAG+GGG + chr1.3:31628266-31628285 MS.gene060714:CDS 40.0%
!! AAGTTGATAGAGTAAGCAGC+CGG + chr1.3:31630610-31630629 MS.gene060714:CDS 40.0%
!! GAGTTGGGTAACGTTGTTTT+GGG + chr1.3:31628048-31628067 MS.gene060714:CDS 40.0%
!! TAAGCGTTTTGGACCACTTA+AGG + chr1.3:31630575-31630594 MS.gene060714:CDS 40.0%
!! TGAGTTGGGTAACGTTGTTT+TGG + chr1.3:31628047-31628066 MS.gene060714:CDS 40.0%
!!! CCTTTGAGTTGCACTTTTCA+AGG - chr1.3:31628314-31628333 None:intergenic 40.0%
!!! CTGGTTGTTCGTCTTTTTTC+TGG - chr1.3:31630320-31630339 None:intergenic 40.0%
!!! GTGCTGCCTTTTTTAACTAC+AGG - chr1.3:31629529-31629548 None:intergenic 40.0%
AAACATGCACTTGTGAAGCC+TGG + chr1.3:31628800-31628819 MS.gene060714:CDS 45.0%
AAACCCCCAATAGTTGGAAC+TGG + chr1.3:31630156-31630175 MS.gene060714:CDS 45.0%
AACCAGTGCAACAACCATCA+CGG + chr1.3:31630289-31630308 MS.gene060714:CDS 45.0%
AACCCCCAATAGTTGGAACT+GGG + chr1.3:31630157-31630176 MS.gene060714:CDS 45.0%
AATCACACCGCGGAGATTAA+AGG + chr1.3:31628459-31628478 MS.gene060714:CDS 45.0%
ACAACCCTAGATTCCTCAAC+CGG - chr1.3:31627988-31628007 None:intergenic 45.0%
ACAGGGGTCGAAACTACAAT+CGG + chr1.3:31628174-31628193 MS.gene060714:CDS 45.0%
ACATACCACAGACCCATCTA+GGG - chr1.3:31627905-31627924 None:intergenic 45.0%
ACCACCAACTTTCACACCAT+GGG - chr1.3:31627878-31627897 None:intergenic 45.0%
ACTGACAGGGTCATTGACAA+TGG + chr1.3:31630225-31630244 MS.gene060714:CDS 45.0%
AGATTCCTCAACCGGATACT+CGG - chr1.3:31627980-31627999 None:intergenic 45.0%
AGGAAGAAACCCCCAATAGT+TGG + chr1.3:31630150-31630169 MS.gene060714:CDS 45.0%
AGTATCCGGTTGAGGAATCT+AGG + chr1.3:31627980-31627999 MS.gene060714:CDS 45.0%
AGTCAGACAGTAGAGAACAC+CGG + chr1.3:31629217-31629236 MS.gene060714:CDS 45.0%
ATAGCTGACAACGATGTGAG+CGG + chr1.3:31628342-31628361 MS.gene060714:CDS 45.0%
ATGTGGGGGTCATAATGAAG+TGG + chr1.3:31627921-31627940 MS.gene060714:CDS 45.0%
ATTCTGTTGGGGTAGTTGGT+GGG + chr1.3:31627953-31627972 MS.gene060714:CDS 45.0%
CACTGTGCATCCATCAAAGA+AGG + chr1.3:31629579-31629598 MS.gene060714:CDS 45.0%
CCTGATCATCCTCATCAGTT+GGG - chr1.3:31629945-31629964 None:intergenic 45.0%
CGACACATATTGGACTGACA+GGG + chr1.3:31630212-31630231 MS.gene060714:CDS 45.0%
CGTGAGGAGATGCAAATAGA+CGG + chr1.3:31628399-31628418 MS.gene060714:CDS 45.0%
GACACTCAAGTTACTGACCA+AGG + chr1.3:31628659-31628678 MS.gene060714:CDS 45.0%
GATGACTCCGAAATGCAAGA+TGG + chr1.3:31629730-31629749 MS.gene060714:CDS 45.0%
GCTATCTTCACTTCAGCTTG+TGG + chr1.3:31629996-31630015 MS.gene060714:CDS 45.0%
GGTTTGTGGTGATTCTGTTG+GGG + chr1.3:31627942-31627961 MS.gene060714:CDS 45.0%
GTATCCGGTTGAGGAATCTA+GGG + chr1.3:31627981-31628000 MS.gene060714:CDS 45.0%
GTCAACAAGGAGTCAAATGG+TGG + chr1.3:31628716-31628735 MS.gene060714:CDS 45.0%
GTCTCAAGACGAGTCGAATA+TGG + chr1.3:31629148-31629167 MS.gene060714:CDS 45.0%
GTGACCCAGTTCCAACTATT+GGG - chr1.3:31630164-31630183 None:intergenic 45.0%
GTGAGAGATGAAGCAGTAGT+TGG + chr1.3:31628078-31628097 MS.gene060714:CDS 45.0%
TAGATGGGTCTGTGGTATGT+GGG + chr1.3:31627905-31627924 MS.gene060714:CDS 45.0%
TCAAAGTCTCCATCTGCCTT+TGG - chr1.3:31629889-31629908 None:intergenic 45.0%
TCACTGCGTCACCTTCTATA+AGG + chr1.3:31629842-31629861 MS.gene060714:CDS 45.0%
TCCTGATCATCCTCATCAGT+TGG - chr1.3:31629946-31629965 None:intergenic 45.0%
TCTTAAAGACCACTCTTGCC+CGG - chr1.3:31630632-31630651 None:intergenic 45.0%
TGACCCAGTTCCAACTATTG+GGG - chr1.3:31630163-31630182 None:intergenic 45.0%
TGCAACACAAGACCAGGAAA+TGG + chr1.3:31630773-31630792 MS.gene060714:CDS 45.0%
TGTTGATGCAACACAAGACC+AGG + chr1.3:31630767-31630786 MS.gene060714:CDS 45.0%
TTCTAGTGACCGATCTCCAA+AGG + chr1.3:31629870-31629889 MS.gene060714:CDS 45.0%
! GCTTTAGCAGGTAGTTCTGT+AGG + chr1.3:31628264-31628283 MS.gene060714:CDS 45.0%
! GTGGTTTGTGGTGATTCTGT+TGG + chr1.3:31627940-31627959 MS.gene060714:CDS 45.0%
! TTTGGAGCTTGTGACTGCTA+AGG + chr1.3:31629366-31629385 MS.gene060714:CDS 45.0%
! TTTGGTGACTTAGCAGAGAC+TGG - chr1.3:31630339-31630358 None:intergenic 45.0%
! TTTTCCTTTCCATCGCGCAA+CGG - chr1.3:31628695-31628714 None:intergenic 45.0%
!! AGTTGATAGAGTAAGCAGCC+GGG + chr1.3:31630611-31630630 MS.gene060714:CDS 45.0%
!! ATTCTCCTGATGGTGATGGT+CGG + chr1.3:31629638-31629657 MS.gene060714:CDS 45.0%
!! GAAGCTTTGAACAGTGCACT+TGG - chr1.3:31630744-31630763 None:intergenic 45.0%
!! TTGGTGGTGAAACCCTAGAT+GGG + chr1.3:31627890-31627909 MS.gene060714:CDS 45.0%
!!! TGCACTGGTTTTTGTTGCAC+TGG - chr1.3:31630279-31630298 None:intergenic 45.0%
!!! TGGGTAACGTTGTTTTGGGA+GGG + chr1.3:31628052-31628071 MS.gene060714:CDS 45.0%
!!! TTGGGTAACGTTGTTTTGGG+AGG + chr1.3:31628051-31628070 MS.gene060714:CDS 45.0%
AAACGATCAAAGCCAGCCGT+AGG - chr1.3:31629349-31629368 None:intergenic 50.0%
AAAGCCAGCCGTAGGAAACT+CGG - chr1.3:31629341-31629360 None:intergenic 50.0%
AAGTGAGAAGTCACCCATGG+TGG + chr1.3:31628912-31628931 MS.gene060714:CDS 50.0%
AATCTCCGCGGTGTGATTCA+CGG - chr1.3:31628457-31628476 None:intergenic 50.0%
ACCCATGGTGTGAAAGTTGG+TGG + chr1.3:31627874-31627893 MS.gene060714:CDS 50.0%
AGATGGGTCTGTGGTATGTG+GGG + chr1.3:31627906-31627925 MS.gene060714:CDS 50.0%
ATCCGTCAGATGCATCTGAG+AGG + chr1.3:31628951-31628970 MS.gene060714:CDS 50.0%
ATTTCGGAGTCATCGGCGTA+GGG - chr1.3:31629724-31629743 None:intergenic 50.0%
CAAGGAGTCAAATGGTGGTC+AGG + chr1.3:31628721-31628740 MS.gene060714:CDS 50.0%
CACATACCACAGACCCATCT+AGG - chr1.3:31627906-31627925 None:intergenic 50.0%
CACCACCAACTTTCACACCA+TGG - chr1.3:31627879-31627898 None:intergenic 50.0%
CCATCACCATCAGGAGAATC+TGG - chr1.3:31629637-31629656 None:intergenic 50.0%
CCCAACTGATGAGGATGATC+AGG + chr1.3:31629942-31629961 MS.gene060714:CDS 50.0%
CCCTGTACTACCAACTACTG+CGG - chr1.3:31628160-31628179 None:intergenic 50.0%
CTAGATGGGTCTGTGGTATG+TGG + chr1.3:31627904-31627923 MS.gene060714:CDS 50.0%
CTGTAGTTGTGGCTGCTGAT+TGG + chr1.3:31630091-31630110 MS.gene060714:CDS 50.0%
GACCCAGTTCCAACTATTGG+GGG - chr1.3:31630162-31630181 None:intergenic 50.0%
GACGGATCAAATATCTGCCC+AGG - chr1.3:31628938-31628957 None:intergenic 50.0%
GATTCTGTTGGGGTAGTTGG+TGG + chr1.3:31627952-31627971 MS.gene060714:CDS 50.0%
GCAAAGTGAGAAGTCACCCA+TGG + chr1.3:31628909-31628928 MS.gene060714:CDS 50.0%
GCGACACATATTGGACTGAC+AGG + chr1.3:31630211-31630230 MS.gene060714:CDS 50.0%
GGTGACCCAGTTCCAACTAT+TGG - chr1.3:31630165-31630184 None:intergenic 50.0%
GGTGATTCTGTTGGGGTAGT+TGG + chr1.3:31627949-31627968 MS.gene060714:CDS 50.0%
GTCAGACAGTAGAGAACACC+GGG + chr1.3:31629218-31629237 MS.gene060714:CDS 50.0%
GTGACCCATGGTGTGAAAGT+TGG + chr1.3:31627871-31627890 MS.gene060714:CDS 50.0%
TATCTTGTGATCTGCGGCCT+CGG - chr1.3:31628223-31628242 None:intergenic 50.0%
TCAGAAACCACTGTGACCCA+TGG + chr1.3:31627859-31627878 MS.gene060714:CDS 50.0%
TCAGACAGTAGAGAACACCG+GGG + chr1.3:31629219-31629238 MS.gene060714:CDS 50.0%
TCCGTCAGATGCATCTGAGA+GGG + chr1.3:31628952-31628971 MS.gene060714:CDS 50.0%
TGAAACCCTAGATGGGTCTG+TGG + chr1.3:31627897-31627916 MS.gene060714:CDS 50.0%
TGAAACCGTGAATCACACCG+CGG + chr1.3:31628449-31628468 MS.gene060714:CDS 50.0%
TGGTCGGACTCCAGATAATC+TGG + chr1.3:31629654-31629673 MS.gene060714:CDS 50.0%
TGTGTCTCTCCCAACTGATG+AGG + chr1.3:31629933-31629952 MS.gene060714:CDS 50.0%
TTCCGTGATGGTTGTTGCAC+TGG - chr1.3:31630294-31630313 None:intergenic 50.0%
TTCTGTTCGTGCAGGTTCGT+CGG + chr1.3:31628586-31628605 MS.gene060714:intron 50.0%
TTTCACACCATGGGTCACAG+TGG - chr1.3:31627869-31627888 None:intergenic 50.0%
! AGCGCTCTTGCTCCTTTTCT+TGG - chr1.3:31629695-31629714 None:intergenic 50.0%
! CCAGATTCTCCTGATGGTGA+TGG + chr1.3:31629634-31629653 MS.gene060714:CDS 50.0%
! CTCCATCTGCCTTTGGAGAT+CGG - chr1.3:31629882-31629901 None:intergenic 50.0%
! GCTTGTAGTTCTGTTCGTGC+AGG + chr1.3:31628578-31628597 MS.gene060714:intron 50.0%
! GGCTTACGATTAACTTGGGC+TGG - chr1.3:31630405-31630424 None:intergenic 50.0%
! GGCTTTGGTGACTTAACAGC+TGG - chr1.3:31630363-31630382 None:intergenic 50.0%
! GGTGACTTAACAGCTGGCTT+TGG - chr1.3:31630357-31630376 None:intergenic 50.0%
! GTCGGTGTCTATTGAGACTG+AGG + chr1.3:31628604-31628623 MS.gene060714:CDS 50.0%
! TGTGAGCGGTGTTTCTGCTT+TGG + chr1.3:31628356-31628375 MS.gene060714:CDS 50.0%
! TTCTGAAAGCAATCCTGCCG+AGG + chr1.3:31630443-31630462 MS.gene060714:CDS 50.0%
!! ACATTGTGGAGGTGTTGACC+CGG + chr1.3:31629444-31629463 MS.gene060714:CDS 50.0%
!! CCGCAGTAGTTGGTAGTACA+GGG + chr1.3:31628157-31628176 MS.gene060714:CDS 50.0%
!! CGATTAACTTGGGCTGGCTT+TGG - chr1.3:31630399-31630418 None:intergenic 50.0%
!! CGCAGTAGTTGGTAGTACAG+GGG + chr1.3:31628158-31628177 MS.gene060714:CDS 50.0%
!! GTTGGTGGTGAAACCCTAGA+TGG + chr1.3:31627889-31627908 MS.gene060714:CDS 50.0%
!! TACGGCTGGCTTTGATCGTT+TGG + chr1.3:31629348-31629367 MS.gene060714:CDS 50.0%
!!! GGGTAACGTTGTTTTGGGAG+GGG + chr1.3:31628053-31628072 MS.gene060714:CDS 50.0%
AATATCTGCCCAGGCCACCA+TGG - chr1.3:31628929-31628948 None:intergenic 55.0%
AATGCGGCGGCAGTTGAGTT+GGG + chr1.3:31628033-31628052 MS.gene060714:CDS 55.0%
ACTACCAACTACTGCGGCCT+CGG - chr1.3:31628154-31628173 None:intergenic 55.0%
AGAAGCCGGGAGTGAGAATG+CGG + chr1.3:31628017-31628036 MS.gene060714:CDS 55.0%
ATATCTGCCCAGGCCACCAT+GGG - chr1.3:31628928-31628947 None:intergenic 55.0%
CATTTCGGAGTCATCGGCGT+AGG - chr1.3:31629725-31629744 None:intergenic 55.0%
CTATCCGAGTTTCCTACGGC+TGG + chr1.3:31629334-31629353 MS.gene060714:CDS 55.0%
CTTGTGGCACAAGAACCCCT+TGG + chr1.3:31630012-31630031 MS.gene060714:CDS 55.0%
GACCGATCTCCAAAGGCAGA+TGG + chr1.3:31629877-31629896 MS.gene060714:CDS 55.0%
GATGGGTCTGTGGTATGTGG+GGG + chr1.3:31627907-31627926 MS.gene060714:CDS 55.0%
GCCCTCTCAGATGCATCTGA+CGG - chr1.3:31628956-31628975 None:intergenic 55.0%
GGGACTCCAGATTCTCCTGA+TGG + chr1.3:31629628-31629647 MS.gene060714:CDS 55.0%
!! AGTTGGTGGGACCGAGTATC+CGG + chr1.3:31627966-31627985 MS.gene060714:CDS 55.0%
!! CAATATGGTGGATGCTGCCG+AGG + chr1.3:31628134-31628153 MS.gene060714:CDS 55.0%
!! GCCGCAGTAGTTGGTAGTAC+AGG + chr1.3:31628156-31628175 MS.gene060714:CDS 55.0%
!! GGCTTTGGTGACTTGGTAGC+TGG - chr1.3:31630384-31630403 None:intergenic 55.0%
!! GGTGACTTGGTAGCTGGCTT+TGG - chr1.3:31630378-31630397 None:intergenic 55.0%
!! TAGTATGGTGGATGCTGCCG+AGG + chr1.3:31628203-31628222 MS.gene060714:CDS 55.0%
!! TGCACTGGTTTCTGTTGCGC+TGG - chr1.3:31630264-31630283 None:intergenic 55.0%
!! TTGGGCTGGCTTTGGTGACT+TGG - chr1.3:31630391-31630410 None:intergenic 55.0%
!!! AGGAGGTTTTTCGGGAGCCT+CGG - chr1.3:31630463-31630482 None:intergenic 55.0%
AGAAGTCACCCATGGTGGCC+TGG + chr1.3:31628917-31628936 MS.gene060714:CDS 60.0%
AGTAAGCAGCCGGGCAAGAG+TGG + chr1.3:31630620-31630639 MS.gene060714:CDS 60.0%
GAAGTCACCCATGGTGGCCT+GGG + chr1.3:31628918-31628937 MS.gene060714:CDS 60.0%
GAATGCGGCGGCAGTTGAGT+TGG + chr1.3:31628032-31628051 MS.gene060714:CDS 60.0%
GAGGCTCCCGAAAAACCTCC+TGG + chr1.3:31630462-31630481 MS.gene060714:CDS 60.0%
GGAGTCCGACCATCACCATC+AGG - chr1.3:31629646-31629665 None:intergenic 60.0%
TGCACCGTTGCGCGATGGAA+AGG + chr1.3:31628688-31628707 MS.gene060714:CDS 60.0%
TGGGACCGAGTATCCGGTTG+AGG + chr1.3:31627972-31627991 MS.gene060714:CDS 60.0%
TTCCATCGCGCAACGGTGCA+TGG - chr1.3:31628688-31628707 None:intergenic 60.0%
AGCCATGCACCGTTGCGCGA+TGG + chr1.3:31628683-31628702 MS.gene060714:CDS 65.0%
AGCCGGGAGTGAGAATGCGG+CGG + chr1.3:31628020-31628039 MS.gene060714:CDS 65.0%
GCAACGGTGCATGGCTCCCT+TGG - chr1.3:31628679-31628698 None:intergenic 65.0%
TGCCGCCGCATTCTCACTCC+CGG - chr1.3:31628025-31628044 None:intergenic 65.0%
!!! GGTTTTTCGGGAGCCTCGGC+AGG - chr1.3:31630459-31630478 None:intergenic 65.0%
GCTGCCGAGGCCGCAGTAGT+TGG + chr1.3:31628147-31628166 MS.gene060714:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 31627838 31630833 31627838 ID=MS.gene060714
chr1.3 mRNA 31627838 31630833 31627838 ID=MS.gene060714.t1;Parent=MS.gene060714
chr1.3 exon 31627838 31628480 31627838 ID=MS.gene060714.t1.exon1;Parent=MS.gene060714.t1
chr1.3 CDS 31627838 31628480 31627838 ID=cds.MS.gene060714.t1;Parent=MS.gene060714.t1
chr1.3 exon 31628600 31630833 31628600 ID=MS.gene060714.t1.exon2;Parent=MS.gene060714.t1
chr1.3 CDS 31628600 31630833 31628600 ID=cds.MS.gene060714.t1;Parent=MS.gene060714.t1
Gene Sequence

>MS.gene060714

ATGGAAGAACCAGAAAATGTTTCAGAAACCACTGTGACCCATGGTGTGAAAGTTGGTGGTGAAACCCTAGATGGGTCTGTGGTATGTGGGGGTCATAATGAAGTGGTTTGTGGTGATTCTGTTGGGGTAGTTGGTGGGACCGAGTATCCGGTTGAGGAATCTAGGGTTGTAGAATTTGAAGAAGCCGGGAGTGAGAATGCGGCGGCAGTTGAGTTGGGTAACGTTGTTTTGGGAGGGGAAGTGAGAGATGAAGCAGTAGTTGGTAGTACAGTTGTCGAAACAACAATCGGTGACTTCAATATGGTGGATGCTGCCGAGGCCGCAGTAGTTGGTAGTACAGGGGTCGAAACTACAATCGGTGACTTTAGTATGGTGGATGCTGCCGAGGCCGCAGATCACAAGATAATAAATACTAGCAATGATGATGCTTTAGCAGGTAGTTCTGTAGGGGAAGAAAATGTACAGTGCTTTAGCCTTGAAAAGTGCAACTCAAAGGAGCAATTGATAGCTGACAACGATGTGAGCGGTGTTTCTGCTTTGGATGCTCAACAATCTGATGTACGTGAGGAGATGCAAATAGACGGTGAAGATCAACAAGGGACAGAAAGAAATGAAACCGTGAATCACACCGCGGAGATTAAAGGTAAGAAGATATCTGCCGATTTCATTGGTGTTTTTTCCAGCTTAACTAGTGGTTACTTGTAGTAAATGAAAATGTTGTTTAGTTTCTAGATAATGATGCTTGTAGTTCTGTTCGTGCAGGTTCGTCGGTGTCTATTGAGACTGAGGAAAACTTGGATGCTAATGCAATTGTAGAAGAAGACACTCAAGTTACTGACCAAGGGAGCCATGCACCGTTGCGCGATGGAAAGGAAAAAGTCAACAAGGAGTCAAATGGTGGTCAGGAAATTGAAAAAGTTAATGAAGTTGGGAAGAGAAAACTAAGAGATAGAAAAGCCGGAAAACATGCACTTGTGAAGCCTGGTAGTTCAGAAATAGTTCATCAGGCACGATATTTGCTGCCAAAAGAAAAAGAAGAAGGCGAGTTTTCTCTCTCAGATATGGTTTGGGGCAAAGTGAGAAGTCACCCATGGTGGCCTGGGCAGATATTTGATCCGTCAGATGCATCTGAGAGGGCAAAGAAGCATTATAAAAAAGATTCCTATTTCGTTGCATATTTTGGGGACAAAACATTTGCATGGAATGAAGCATCTAAGCTAAAGCATTTTAGGGCACATTTCTCCACAATTGAAGAGCATAGGAATCGTTCAGAATCATTCCAGAGTGCTATTAATTGTGCTTTGGATGAAGTCTCAAGACGAGTCGAATATGGGCTAGCATGTTCTTGTATACCTAAAGACACCTATGACATGATTAAAAGTCAGACAGTAGAGAACACCGGGGTTCAACAAGAAATAAGTATCACACATGGGGTGGATGAGTCTCTAAATGCTGACTCATTTTCACCTTTGAATCTTATAGAATATGTGAAAACACTATCCGAGTTTCCTACGGCTGGCTTTGATCGTTTGGAGCTTGTGACTGCTAAGGCTCAGCTGCTTGCTTTTAATCGTTTTAAGGGTTTCTCTTGCTTGCCAGAAATACAACATTGTGGAGGTGTTGACCCGGACCATTCATTTTTTGTTGACGATGAACAAGATTTGTGTGAAGATACTGAGAATGCAACTCCTGTAGTTAAAAAAGGCAGCACCCGTCAAAAGCGTAAATATAAGTTCAAGGACACTGTGCATCCATCAAAGAAGGAAAAAAGGATGTCAGACCTAATGAATGGGACTCCAGATTCTCCTGATGGTGATGGTCGGACTCCAGATAATCTGGTTTCACCTGAACATTCCAAGAAAAGGAGCAAGAGCGCTATTGATCCCTACGCCGATGACTCCGAAATGCAAGATGGGAGAAAAACAATTTCTGTTGCAAAAGTTTCAAATACCACAAAGTCATCGTTTAAAATCGGTGATTGTATTCGTCGGGCTGCTAGTCAACTCACTGCGTCACCTTCTATAAGGAAGTGTTCTAGTGACCGATCTCCAAAGGCAGATGGAGACTTTGATGTTTTTCCTGATAATGAATCAGATGTGTCTCTCCCAACTGATGAGGATGATCAGGATTCGACAGAATATTCGTCTCTAGATGATTTGCTATCTTCACTTCAGCTTGTGGCACAAGAACCCCTTGGAGAGTATACTTTTCTGAATGGCAGCATAGTCAGCTTCTTCTCTGATTTCAGAAATTCTGTAGTTGTGGCTGCTGATTGGAAAGAGATTTTACGTACGGATACATTTGGTATTAAGAGGAAGAAACCCCCAATAGTTGGAACTGGGTCACCTGAAACATTTGAATTTGAAGATATGAGCGACACATATTGGACTGACAGGGTCATTGACAATGGCACTGAAGAGAAACCAGCGCAACAGAAACCAGTGCAACAAAAACCAGTGCAACAACCATCACGGAAAAACCAGAAAAAAGACGAACAACCAGTCTCTGCTAAGTCACCAAAGCCAGCTGTTAAGTCACCAAAGCCAGCTACCAAGTCACCAAAGCCAGCCCAAGTTAATCGTAAGCCCTATACCAAGAAAAAAAATTCTGAAAGCAATCCTGCCGAGGCTCCCGAAAAACCTCCTGGTTATATAGATGACAATGCTCCTGCTGAACTTGTTATGAACTTTGCCGAGCTCAATTCTGTTCCCTTAGAAGCAAACCTTAACAAAATGTTTAAGCGTTTTGGACCACTTAAGGAATCTGAAACAGAAGTTGATAGAGTAAGCAGCCGGGCAAGAGTGGTCTTTAAGAAATGTGTAGATGCAGAGGTAGCTTTCAATAGTGCTAAGAAGTTCAACATATTTGGATCAGTACTCGTAAATTACCAGCTTAATTACACTCCAAGTGCACTGTTCAAAGCTTCATCTGTTGATGCAACACAAGACCAGGAAATGGTTTTCGATCTCTCCAATTTTGAAGTTAATATGGTCTAG

Protein sequence

>MS.gene060714.t1

MEEPENVSETTVTHGVKVGGETLDGSVVCGGHNEVVCGDSVGVVGGTEYPVEESRVVEFEEAGSENAAAVELGNVVLGGEVRDEAVVGSTVVETTIGDFNMVDAAEAAVVGSTGVETTIGDFSMVDAAEAADHKIINTSNDDALAGSSVGEENVQCFSLEKCNSKEQLIADNDVSGVSALDAQQSDVREEMQIDGEDQQGTERNETVNHTAEIKGSSVSIETEENLDANAIVEEDTQVTDQGSHAPLRDGKEKVNKESNGGQEIEKVNEVGKRKLRDRKAGKHALVKPGSSEIVHQARYLLPKEKEEGEFSLSDMVWGKVRSHPWWPGQIFDPSDASERAKKHYKKDSYFVAYFGDKTFAWNEASKLKHFRAHFSTIEEHRNRSESFQSAINCALDEVSRRVEYGLACSCIPKDTYDMIKSQTVENTGVQQEISITHGVDESLNADSFSPLNLIEYVKTLSEFPTAGFDRLELVTAKAQLLAFNRFKGFSCLPEIQHCGGVDPDHSFFVDDEQDLCEDTENATPVVKKGSTRQKRKYKFKDTVHPSKKEKRMSDLMNGTPDSPDGDGRTPDNLVSPEHSKKRSKSAIDPYADDSEMQDGRKTISVAKVSNTTKSSFKIGDCIRRAASQLTASPSIRKCSSDRSPKADGDFDVFPDNESDVSLPTDEDDQDSTEYSSLDDLLSSLQLVAQEPLGEYTFLNGSIVSFFSDFRNSVVVAADWKEILRTDTFGIKRKKPPIVGTGSPETFEFEDMSDTYWTDRVIDNGTEEKPAQQKPVQQKPVQQPSRKNQKKDEQPVSAKSPKPAVKSPKPATKSPKPAQVNRKPYTKKKNSESNPAEAPEKPPGYIDDNAPAELVMNFAELNSVPLEANLNKMFKRFGPLKESETEVDRVSSRARVVFKKCVDAEVAFNSAKKFNIFGSVLVNYQLNYTPSALFKASSVDATQDQEMVFDLSNFEVNMV