Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060714.t1 | XP_024631476.1 | 92.5 | 961 | 46 | 2 | 1 | 958 | 1 | 938 | 0.00E+00 | 1603.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060714.t1 | A4FUF0 | 35.9 | 92 | 54 | 3 | 312 | 403 | 8 | 94 | 7.9e-07 | 57.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060714.t1 | A0A072VHV7 | 92.5 | 961 | 46 | 2 | 1 | 958 | 1 | 938 | 0.0e+00 | 1603.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060714 | MS.gene85770 | 0.892585 | 1.39E-74 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene050299 | MS.gene060714 | PPI |
MS.gene92710 | MS.gene060714 | PPI |
MS.gene07741 | MS.gene060714 | PPI |
MS.gene007196 | MS.gene060714 | PPI |
MS.gene77911 | MS.gene060714 | PPI |
MS.gene045235 | MS.gene060714 | PPI |
MS.gene067033 | MS.gene060714 | PPI |
MS.gene75575 | MS.gene060714 | PPI |
MS.gene045232 | MS.gene060714 | PPI |
MS.gene045233 | MS.gene060714 | PPI |
MS.gene55120 | MS.gene060714 | PPI |
MS.gene79130 | MS.gene060714 | PPI |
MS.gene24697 | MS.gene060714 | PPI |
MS.gene95527 | MS.gene060714 | PPI |
MS.gene037044 | MS.gene060714 | PPI |
MS.gene46640 | MS.gene060714 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060714.t1 | MTR_1g049120 | 93.424 | 958 | 43 | 1 | 1 | 958 | 1 | 938 | 0.0 | 1816 |
MS.gene060714.t1 | MTR_4g036445 | 59.729 | 591 | 174 | 9 | 73 | 604 | 33 | 618 | 0.0 | 667 |
MS.gene060714.t1 | MTR_1g072780 | 54.626 | 681 | 243 | 15 | 303 | 958 | 355 | 994 | 0.0 | 656 |
MS.gene060714.t1 | MTR_2g047912 | 62.611 | 452 | 105 | 10 | 494 | 932 | 272 | 672 | 1.69e-164 | 498 |
MS.gene060714.t1 | MTR_2g047912 | 39.016 | 305 | 115 | 8 | 1 | 266 | 1 | 273 | 1.47e-35 | 145 |
MS.gene060714.t1 | MTR_2g104120 | 30.673 | 639 | 354 | 16 | 310 | 929 | 258 | 826 | 1.44e-83 | 288 |
MS.gene060714.t1 | MTR_1g066890 | 31.934 | 667 | 345 | 19 | 301 | 929 | 307 | 902 | 9.06e-83 | 287 |
MS.gene060714.t1 | MTR_2g104980 | 54.369 | 103 | 46 | 1 | 310 | 412 | 233 | 334 | 1.49e-34 | 138 |
MS.gene060714.t1 | MTR_6g005840 | 28.000 | 450 | 266 | 16 | 92 | 493 | 14 | 453 | 1.14e-26 | 117 |
MS.gene060714.t1 | MTR_6g005840 | 27.924 | 419 | 243 | 16 | 114 | 493 | 13 | 411 | 2.17e-26 | 117 |
MS.gene060714.t1 | MTR_6g005960 | 35.233 | 193 | 121 | 4 | 306 | 497 | 208 | 397 | 2.70e-25 | 112 |
MS.gene060714.t1 | MTR_7g113180 | 32.432 | 185 | 109 | 4 | 310 | 485 | 87 | 264 | 6.12e-24 | 109 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060714.t1 | AT3G09670 | 37.371 | 388 | 191 | 12 | 309 | 646 | 196 | 581 | 5.96e-62 | 224 |
MS.gene060714.t1 | AT3G09670 | 37.371 | 388 | 191 | 12 | 309 | 646 | 196 | 581 | 5.96e-62 | 224 |
MS.gene060714.t1 | AT5G02950 | 40.000 | 280 | 137 | 8 | 313 | 584 | 98 | 354 | 4.21e-55 | 203 |
MS.gene060714.t1 | AT5G02950 | 53.846 | 78 | 36 | 0 | 850 | 927 | 546 | 623 | 7.25e-18 | 89.0 |
MS.gene060714.t1 | AT5G02950 | 40.000 | 280 | 137 | 8 | 313 | 584 | 98 | 354 | 4.21e-55 | 203 |
MS.gene060714.t1 | AT5G02950 | 53.846 | 78 | 36 | 0 | 850 | 927 | 546 | 623 | 7.25e-18 | 89.0 |
MS.gene060714.t1 | AT3G54760 | 37.500 | 344 | 137 | 8 | 598 | 934 | 470 | 742 | 2.49e-53 | 200 |
MS.gene060714.t1 | AT3G54760 | 37.500 | 344 | 137 | 8 | 598 | 934 | 501 | 773 | 4.81e-53 | 199 |
MS.gene060714.t1 | AT5G40340 | 36.041 | 197 | 117 | 6 | 310 | 501 | 125 | 317 | 1.22e-25 | 114 |
MS.gene060714.t1 | AT5G40340 | 36.041 | 197 | 117 | 6 | 310 | 501 | 125 | 317 | 1.32e-25 | 114 |
MS.gene060714.t1 | AT5G27650 | 33.702 | 181 | 112 | 5 | 310 | 485 | 171 | 348 | 9.39e-24 | 108 |
MS.gene060714.t1 | AT3G05430 | 33.520 | 179 | 115 | 4 | 310 | 485 | 133 | 310 | 3.70e-22 | 103 |
MS.gene060714.t1 | AT3G05430 | 33.520 | 179 | 115 | 4 | 310 | 485 | 133 | 310 | 3.83e-22 | 103 |
MS.gene060714.t1 | AT3G27860 | 28.333 | 300 | 178 | 14 | 304 | 593 | 55 | 327 | 2.51e-15 | 80.9 |
MS.gene060714.t1 | AT3G27860 | 28.333 | 300 | 178 | 14 | 304 | 593 | 55 | 327 | 2.51e-15 | 80.9 |
Find 209 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTATTTCGTTGCATATTT+TGG | 0.018484 | 1.3:+31628998 | MS.gene060714:CDS |
CCTCCACAATGTTGTATTTC+TGG | 0.135555 | 1.3:-31629433 | None:intergenic |
GCTAAGAAGTTCAACATATT+TGG | 0.166046 | 1.3:+31630684 | MS.gene060714:CDS |
AACAAAATGTTTAAGCGTTT+TGG | 0.179710 | 1.3:+31630564 | MS.gene060714:CDS |
GACCATATTAACTTCAAAAT+TGG | 0.197232 | 1.3:-31630808 | None:intergenic |
TTCTCTCTCAGATATGGTTT+GGG | 0.239508 | 1.3:+31628886 | MS.gene060714:CDS |
TCTTCAAATTCAAATGTTTC+AGG | 0.243949 | 1.3:-31630183 | None:intergenic |
TTTGTTAAGGTTTGCTTCTA+AGG | 0.244285 | 1.3:-31630547 | None:intergenic |
GTCTCAAGACGAGTCGAATA+TGG | 0.258530 | 1.3:+31629148 | MS.gene060714:CDS |
GGTGATTCTGTTGGGGTAGT+TGG | 0.264248 | 1.3:+31627949 | MS.gene060714:CDS |
TACGGCTGGCTTTGATCGTT+TGG | 0.305489 | 1.3:+31629348 | MS.gene060714:CDS |
TTTCTCTCTCAGATATGGTT+TGG | 0.312975 | 1.3:+31628885 | MS.gene060714:CDS |
TGAGTTGGGTAACGTTGTTT+TGG | 0.316781 | 1.3:+31628047 | MS.gene060714:CDS |
AATCACACCGCGGAGATTAA+AGG | 0.319150 | 1.3:+31628459 | MS.gene060714:CDS |
GTGACCCAGTTCCAACTATT+GGG | 0.320240 | 1.3:-31630161 | None:intergenic |
GGTGACCCAGTTCCAACTAT+TGG | 0.324538 | 1.3:-31630162 | None:intergenic |
GACACATCTGATTCATTATC+AGG | 0.324654 | 1.3:-31629916 | None:intergenic |
CGATTAACTTGGGCTGGCTT+TGG | 0.335599 | 1.3:-31630396 | None:intergenic |
CCCAAAATATGCAACGAAAT+AGG | 0.337444 | 1.3:-31628999 | None:intergenic |
TCAGGTGAAACCAGATTATC+TGG | 0.347288 | 1.3:-31629664 | None:intergenic |
GGTGACTTGGTAGCTGGCTT+TGG | 0.349758 | 1.3:-31630375 | None:intergenic |
ATCATGTCATAGGTGTCTTT+AGG | 0.355766 | 1.3:-31629190 | None:intergenic |
AGTATCCGGTTGAGGAATCT+AGG | 0.358039 | 1.3:+31627980 | MS.gene060714:CDS |
TGGTTTGTGGTGATTCTGTT+GGG | 0.360124 | 1.3:+31627941 | MS.gene060714:CDS |
GGCTTTGGTGACTTGGTAGC+TGG | 0.361549 | 1.3:-31630381 | None:intergenic |
AAGATATGAGCGACACATAT+TGG | 0.375633 | 1.3:+31630202 | MS.gene060714:CDS |
AACAATCGGTGACTTCAATA+TGG | 0.380581 | 1.3:+31628119 | MS.gene060714:CDS |
CCATCACCATCAGGAGAATC+TGG | 0.383648 | 1.3:-31629634 | None:intergenic |
AGAAGTCACCCATGGTGGCC+TGG | 0.392403 | 1.3:+31628917 | MS.gene060714:CDS |
CGGATACATTTGGTATTAAG+AGG | 0.392876 | 1.3:+31630130 | MS.gene060714:CDS |
GGTGACTTAACAGCTGGCTT+TGG | 0.393998 | 1.3:-31630354 | None:intergenic |
TTCCGTGATGGTTGTTGCAC+TGG | 0.394785 | 1.3:-31630291 | None:intergenic |
AATCTCCGCGGTGTGATTCA+CGG | 0.396914 | 1.3:-31628454 | None:intergenic |
AGAGATCGAAAACCATTTCC+TGG | 0.398045 | 1.3:-31630785 | None:intergenic |
CCCAACTGATGAGGATGATC+AGG | 0.400132 | 1.3:+31629942 | MS.gene060714:CDS |
CACATACCACAGACCCATCT+AGG | 0.400940 | 1.3:-31627903 | None:intergenic |
TCACTGCGTCACCTTCTATA+AGG | 0.403119 | 1.3:+31629842 | MS.gene060714:CDS |
TAGATGGGTCTGTGGTATGT+GGG | 0.406634 | 1.3:+31627905 | MS.gene060714:CDS |
TTGGGCTGGCTTTGGTGACT+TGG | 0.409137 | 1.3:-31630388 | None:intergenic |
TACAATCGGTGACTTTAGTA+TGG | 0.412273 | 1.3:+31628188 | MS.gene060714:CDS |
TGTGAGCGGTGTTTCTGCTT+TGG | 0.414830 | 1.3:+31628356 | MS.gene060714:CDS |
TCTGTTTCAGATTCCTTAAG+TGG | 0.417444 | 1.3:-31630588 | None:intergenic |
CTGTAGTTGTGGCTGCTGAT+TGG | 0.424377 | 1.3:+31630091 | MS.gene060714:CDS |
GGCTTTGGTGACTTAACAGC+TGG | 0.426756 | 1.3:-31630360 | None:intergenic |
GAAGTCACCCATGGTGGCCT+GGG | 0.429264 | 1.3:+31628918 | MS.gene060714:CDS |
GCCGCAGTAGTTGGTAGTAC+AGG | 0.435426 | 1.3:+31628156 | MS.gene060714:CDS |
ATTCTGTTGGGGTAGTTGGT+GGG | 0.439002 | 1.3:+31627953 | MS.gene060714:CDS |
TCAAAGTCTCCATCTGCCTT+TGG | 0.439286 | 1.3:-31629886 | None:intergenic |
ACAAAGTCATCGTTTAAAAT+CGG | 0.439705 | 1.3:+31629790 | MS.gene060714:CDS |
GCAACGGTGCATGGCTCCCT+TGG | 0.441735 | 1.3:-31628676 | None:intergenic |
GTGGTTTGTGGTGATTCTGT+TGG | 0.443493 | 1.3:+31627940 | MS.gene060714:CDS |
CTAGATGGGTCTGTGGTATG+TGG | 0.448465 | 1.3:+31627904 | MS.gene060714:CDS |
TTCCATCGCGCAACGGTGCA+TGG | 0.449140 | 1.3:-31628685 | None:intergenic |
TGGTCGGACTCCAGATAATC+TGG | 0.450902 | 1.3:+31629654 | MS.gene060714:CDS |
CAAGGAGTCAAATGGTGGTC+AGG | 0.451976 | 1.3:+31628721 | MS.gene060714:CDS |
GTGAGAGATGAAGCAGTAGT+TGG | 0.452544 | 1.3:+31628078 | MS.gene060714:CDS |
CTAGAACACTTCCTTATAGA+AGG | 0.452692 | 1.3:-31629853 | None:intergenic |
GTTGGTGGTGAAACCCTAGA+TGG | 0.452873 | 1.3:+31627889 | MS.gene060714:CDS |
GCTTTAGCAGGTAGTTCTGT+AGG | 0.454456 | 1.3:+31628264 | MS.gene060714:CDS |
CACCTGAACATTCCAAGAAA+AGG | 0.455137 | 1.3:+31629680 | MS.gene060714:CDS |
AGTTGGTGGGACCGAGTATC+CGG | 0.455528 | 1.3:+31627966 | MS.gene060714:CDS |
GATTCTGTTGGGGTAGTTGG+TGG | 0.455837 | 1.3:+31627952 | MS.gene060714:CDS |
TAGTTCAGAAATAGTTCATC+AGG | 0.456384 | 1.3:+31628823 | MS.gene060714:CDS |
TTCTGTTCGTGCAGGTTCGT+CGG | 0.457233 | 1.3:+31628586 | MS.gene060714:intron |
TGCACTGGTTTCTGTTGCGC+TGG | 0.460959 | 1.3:-31630261 | None:intergenic |
GGCTTACGATTAACTTGGGC+TGG | 0.461800 | 1.3:-31630402 | None:intergenic |
AATCTGGAGTCCCATTCATT+AGG | 0.464940 | 1.3:-31629618 | None:intergenic |
TATAGGGCTTACGATTAACT+TGG | 0.466075 | 1.3:-31630407 | None:intergenic |
TATCTTGTGATCTGCGGCCT+CGG | 0.467878 | 1.3:-31628220 | None:intergenic |
AAAGCGTAAATATAAGTTCA+AGG | 0.468189 | 1.3:+31629555 | MS.gene060714:CDS |
TATTGAGACTGAGGAAAACT+TGG | 0.469804 | 1.3:+31628613 | MS.gene060714:CDS |
TTTGGTGACTTAGCAGAGAC+TGG | 0.474173 | 1.3:-31630336 | None:intergenic |
TCTTAAAGACCACTCTTGCC+CGG | 0.475118 | 1.3:-31630629 | None:intergenic |
CTCCATCTGCCTTTGGAGAT+CGG | 0.475922 | 1.3:-31629879 | None:intergenic |
AATCGGTGATTGTATTCGTC+GGG | 0.480709 | 1.3:+31629807 | MS.gene060714:CDS |
GAGTGCTATTAATTGTGCTT+TGG | 0.482515 | 1.3:+31629120 | MS.gene060714:CDS |
ACAACCCTAGATTCCTCAAC+CGG | 0.485275 | 1.3:-31627985 | None:intergenic |
TCTCAAGACGAGTCGAATAT+GGG | 0.485338 | 1.3:+31629149 | MS.gene060714:CDS |
GCTGCCGAGGCCGCAGTAGT+TGG | 0.486116 | 1.3:+31628147 | MS.gene060714:CDS |
TCCTGATCATCCTCATCAGT+TGG | 0.488623 | 1.3:-31629943 | None:intergenic |
GTTGTAGAATTTGAAGAAGC+CGG | 0.488694 | 1.3:+31628003 | MS.gene060714:CDS |
GCTATCTTCACTTCAGCTTG+TGG | 0.491218 | 1.3:+31629996 | MS.gene060714:CDS |
GAAGCTTTGAACAGTGCACT+TGG | 0.493568 | 1.3:-31630741 | None:intergenic |
ACCACCAACTTTCACACCAT+GGG | 0.493614 | 1.3:-31627875 | None:intergenic |
CATTTCGGAGTCATCGGCGT+AGG | 0.493727 | 1.3:-31629722 | None:intergenic |
TTGTTAAGGTTTGCTTCTAA+GGG | 0.496576 | 1.3:-31630546 | None:intergenic |
AGGATGTCAGACCTAATGAA+TGG | 0.497931 | 1.3:+31629607 | MS.gene060714:CDS |
TGCAACACAAGACCAGGAAA+TGG | 0.498131 | 1.3:+31630773 | MS.gene060714:CDS |
GGAGTCCGACCATCACCATC+AGG | 0.498959 | 1.3:-31629643 | None:intergenic |
GAATGCGGCGGCAGTTGAGT+TGG | 0.502816 | 1.3:+31628032 | MS.gene060714:CDS |
CTTTAGCAGGTAGTTCTGTA+GGG | 0.504598 | 1.3:+31628265 | MS.gene060714:CDS |
AATGCGGCGGCAGTTGAGTT+GGG | 0.505664 | 1.3:+31628033 | MS.gene060714:CDS |
ATCTTGCATTTCGGAGTCAT+CGG | 0.509912 | 1.3:-31629728 | None:intergenic |
TGCACCGTTGCGCGATGGAA+AGG | 0.511662 | 1.3:+31628688 | MS.gene060714:CDS |
AGATGGGTCTGTGGTATGTG+GGG | 0.514040 | 1.3:+31627906 | MS.gene060714:CDS |
CACTGTGCATCCATCAAAGA+AGG | 0.517034 | 1.3:+31629579 | MS.gene060714:CDS |
GGTCATAATGAAGTGGTTTG+TGG | 0.517248 | 1.3:+31627928 | MS.gene060714:CDS |
ATTCCTATGCTCTTCAATTG+TGG | 0.519415 | 1.3:-31629080 | None:intergenic |
TTGTAGAATTTGAAGAAGCC+GGG | 0.519547 | 1.3:+31628004 | MS.gene060714:CDS |
CACTTGGAGTGTAATTAAGC+TGG | 0.521123 | 1.3:-31630725 | None:intergenic |
TCAGAAAAGTATACTCTCCA+AGG | 0.523646 | 1.3:-31630029 | None:intergenic |
GCGACACATATTGGACTGAC+AGG | 0.524575 | 1.3:+31630211 | MS.gene060714:CDS |
CTATCCGAGTTTCCTACGGC+TGG | 0.525255 | 1.3:+31629334 | MS.gene060714:CDS |
CCTGATCATCCTCATCAGTT+GGG | 0.525465 | 1.3:-31629942 | None:intergenic |
AAGTTGATAGAGTAAGCAGC+CGG | 0.526372 | 1.3:+31630610 | MS.gene060714:CDS |
AGCAATGATGATGCTTTAGC+AGG | 0.528080 | 1.3:+31628252 | MS.gene060714:CDS |
AAAGTCAACAAGGAGTCAAA+TGG | 0.528610 | 1.3:+31628713 | MS.gene060714:CDS |
ATTTCGGAGTCATCGGCGTA+GGG | 0.529828 | 1.3:-31629721 | None:intergenic |
TTTCAGAAATTCTGTAGTTG+TGG | 0.530415 | 1.3:+31630080 | MS.gene060714:CDS |
ACATATTCTATAAGATTCAA+AGG | 0.532546 | 1.3:-31629304 | None:intergenic |
GGATGTCAGACCTAATGAAT+GGG | 0.533475 | 1.3:+31629608 | MS.gene060714:CDS |
AGTAAGCAGCCGGGCAAGAG+TGG | 0.535181 | 1.3:+31630620 | MS.gene060714:CDS |
AAACTAAGAGATAGAAAAGC+CGG | 0.536173 | 1.3:+31628776 | MS.gene060714:CDS |
AGATTCCTCAACCGGATACT+CGG | 0.539506 | 1.3:-31627977 | None:intergenic |
CCGCAGTAGTTGGTAGTACA+GGG | 0.543637 | 1.3:+31628157 | MS.gene060714:CDS |
GACGGATCAAATATCTGCCC+AGG | 0.544596 | 1.3:-31628935 | None:intergenic |
TTTGGAGCTTGTGACTGCTA+AGG | 0.547748 | 1.3:+31629366 | MS.gene060714:CDS |
TTGGGGACAAAACATTTGCA+TGG | 0.547879 | 1.3:+31629017 | MS.gene060714:CDS |
ATTTATTATCTTGTGATCTG+CGG | 0.548054 | 1.3:-31628226 | None:intergenic |
GTCAGACAGTAGAGAACACC+GGG | 0.548651 | 1.3:+31629218 | MS.gene060714:CDS |
AAGTTCATAACAAGTTCAGC+AGG | 0.549434 | 1.3:-31630504 | None:intergenic |
AAACATGCACTTGTGAAGCC+TGG | 0.550664 | 1.3:+31628800 | MS.gene060714:CDS |
TGCCGCCGCATTCTCACTCC+CGG | 0.551666 | 1.3:-31628022 | None:intergenic |
TCTCTCTCAGATATGGTTTG+GGG | 0.553140 | 1.3:+31628887 | MS.gene060714:CDS |
AGCCATGCACCGTTGCGCGA+TGG | 0.555384 | 1.3:+31628683 | MS.gene060714:CDS |
AACACTATCCGAGTTTCCTA+CGG | 0.556285 | 1.3:+31629330 | MS.gene060714:CDS |
CACCACCAACTTTCACACCA+TGG | 0.558331 | 1.3:-31627876 | None:intergenic |
GCCCTCTCAGATGCATCTGA+CGG | 0.559014 | 1.3:-31628953 | None:intergenic |
CCAGATTCTCCTGATGGTGA+TGG | 0.559245 | 1.3:+31629634 | MS.gene060714:CDS |
AAATCGGTGATTGTATTCGT+CGG | 0.559399 | 1.3:+31629806 | MS.gene060714:CDS |
ATGACTCCGAAATGCAAGAT+GGG | 0.560146 | 1.3:+31629731 | MS.gene060714:CDS |
GACACTCAAGTTACTGACCA+AGG | 0.560989 | 1.3:+31628659 | MS.gene060714:CDS |
TGGGACCGAGTATCCGGTTG+AGG | 0.563199 | 1.3:+31627972 | MS.gene060714:CDS |
TGAACTATTTCTGAACTACC+AGG | 0.564289 | 1.3:-31628818 | None:intergenic |
TGACCCAGTTCCAACTATTG+GGG | 0.565841 | 1.3:-31630160 | None:intergenic |
ATATCTGCCCAGGCCACCAT+GGG | 0.565877 | 1.3:-31628925 | None:intergenic |
CAATATGGTGGATGCTGCCG+AGG | 0.567224 | 1.3:+31628134 | MS.gene060714:CDS |
GATGACTCCGAAATGCAAGA+TGG | 0.571916 | 1.3:+31629730 | MS.gene060714:CDS |
CAGAAAAGTATACTCTCCAA+GGG | 0.576757 | 1.3:-31630028 | None:intergenic |
ACTTATTTCTTGTTGAACCC+CGG | 0.576846 | 1.3:-31629236 | None:intergenic |
GACCGATCTCCAAAGGCAGA+TGG | 0.577314 | 1.3:+31629877 | MS.gene060714:CDS |
AAAGCCAGCCGTAGGAAACT+CGG | 0.577817 | 1.3:-31629338 | None:intergenic |
AATAAGTATCACACATGGGG+TGG | 0.580958 | 1.3:+31629252 | MS.gene060714:CDS |
CCTTGAAAAGTGCAACTCAA+AGG | 0.582951 | 1.3:+31628311 | MS.gene060714:CDS |
GGGACTCCAGATTCTCCTGA+TGG | 0.585166 | 1.3:+31629628 | MS.gene060714:CDS |
ACAGTTGTCGAAACAACAAT+CGG | 0.585549 | 1.3:+31628105 | MS.gene060714:CDS |
TTCTAGTGACCGATCTCCAA+AGG | 0.585712 | 1.3:+31629870 | MS.gene060714:CDS |
GGTTTGTGGTGATTCTGTTG+GGG | 0.587388 | 1.3:+31627942 | MS.gene060714:CDS |
TGTTGATGCAACACAAGACC+AGG | 0.588104 | 1.3:+31630767 | MS.gene060714:CDS |
AATATCTGCCCAGGCCACCA+TGG | 0.588370 | 1.3:-31628926 | None:intergenic |
TTCTGAAAGCAATCCTGCCG+AGG | 0.588705 | 1.3:+31630443 | MS.gene060714:CDS |
TCTCCACAATTGAAGAGCAT+AGG | 0.596184 | 1.3:+31629077 | MS.gene060714:CDS |
ACTACCAACTACTGCGGCCT+CGG | 0.596716 | 1.3:-31628151 | None:intergenic |
GTGACCCATGGTGTGAAAGT+TGG | 0.597666 | 1.3:+31627871 | MS.gene060714:CDS |
TAGTATGGTGGATGCTGCCG+AGG | 0.597990 | 1.3:+31628203 | MS.gene060714:CDS |
ACAGGGGTCGAAACTACAAT+CGG | 0.598602 | 1.3:+31628174 | MS.gene060714:CDS |
GTATCCGGTTGAGGAATCTA+GGG | 0.602732 | 1.3:+31627981 | MS.gene060714:CDS |
ACATACCACAGACCCATCTA+GGG | 0.603316 | 1.3:-31627902 | None:intergenic |
AAGCACAATTAATAGCACTC+TGG | 0.605736 | 1.3:-31629117 | None:intergenic |
CAAGAAATAAGTATCACACA+TGG | 0.606499 | 1.3:+31629247 | MS.gene060714:CDS |
AAGAAATAAGTATCACACAT+GGG | 0.606954 | 1.3:+31629248 | MS.gene060714:CDS |
ATAGGGCTTACGATTAACTT+GGG | 0.608401 | 1.3:-31630406 | None:intergenic |
ACCCATGGTGTGAAAGTTGG+TGG | 0.609319 | 1.3:+31627874 | MS.gene060714:CDS |
ACATTGTGGAGGTGTTGACC+CGG | 0.610706 | 1.3:+31629444 | MS.gene060714:CDS |
ATTCTCCTGATGGTGATGGT+CGG | 0.611694 | 1.3:+31629638 | MS.gene060714:CDS |
AATCGGTGACTTCAATATGG+TGG | 0.618929 | 1.3:+31628122 | MS.gene060714:CDS |
TAAGGGAACAGAATTGAGCT+CGG | 0.619176 | 1.3:-31630529 | None:intergenic |
TAAGAAATGTGTAGATGCAG+AGG | 0.619624 | 1.3:+31630647 | MS.gene060714:CDS |
CTTCTTACCTTTAATCTCCG+CGG | 0.620007 | 1.3:-31628466 | None:intergenic |
AATCGGTGACTTTAGTATGG+TGG | 0.621137 | 1.3:+31628191 | MS.gene060714:CDS |
TCCGTCAGATGCATCTGAGA+GGG | 0.624122 | 1.3:+31628952 | MS.gene060714:CDS |
AGTTGATAGAGTAAGCAGCC+GGG | 0.624544 | 1.3:+31630611 | MS.gene060714:CDS |
AACCAGTGCAACAACCATCA+CGG | 0.625880 | 1.3:+31630289 | MS.gene060714:CDS |
TGTGTCTCTCCCAACTGATG+AGG | 0.631262 | 1.3:+31629933 | MS.gene060714:CDS |
AAACGATCAAAGCCAGCCGT+AGG | 0.635310 | 1.3:-31629346 | None:intergenic |
TTGGTGGTGAAACCCTAGAT+GGG | 0.636238 | 1.3:+31627890 | MS.gene060714:CDS |
GATGGGTCTGTGGTATGTGG+GGG | 0.641914 | 1.3:+31627907 | MS.gene060714:CDS |
GCATTGTCATCTATATAACC+AGG | 0.644206 | 1.3:-31630480 | None:intergenic |
CTTGTGGCACAAGAACCCCT+TGG | 0.646167 | 1.3:+31630012 | MS.gene060714:CDS |
GTCGGTGTCTATTGAGACTG+AGG | 0.648701 | 1.3:+31628604 | MS.gene060714:CDS |
ATCCGTCAGATGCATCTGAG+AGG | 0.653593 | 1.3:+31628951 | MS.gene060714:CDS |
GACCCAGTTCCAACTATTGG+GGG | 0.653992 | 1.3:-31630159 | None:intergenic |
GTCAACAAGGAGTCAAATGG+TGG | 0.655524 | 1.3:+31628716 | MS.gene060714:CDS |
TTTAGCAGGTAGTTCTGTAG+GGG | 0.655647 | 1.3:+31628266 | MS.gene060714:CDS |
CGTGAGGAGATGCAAATAGA+CGG | 0.660655 | 1.3:+31628399 | MS.gene060714:CDS |
AGAAATAAGTATCACACATG+GGG | 0.660741 | 1.3:+31629249 | MS.gene060714:CDS |
GCAAAGTGAGAAGTCACCCA+TGG | 0.661126 | 1.3:+31628909 | MS.gene060714:CDS |
AGAAGCCGGGAGTGAGAATG+CGG | 0.661274 | 1.3:+31628017 | MS.gene060714:CDS |
ACACTCAAGTTACTGACCAA+GGG | 0.665022 | 1.3:+31628660 | MS.gene060714:CDS |
AGTCAGACAGTAGAGAACAC+CGG | 0.667248 | 1.3:+31629217 | MS.gene060714:CDS |
CGACACATATTGGACTGACA+GGG | 0.669789 | 1.3:+31630212 | MS.gene060714:CDS |
AGCCGGGAGTGAGAATGCGG+CGG | 0.674067 | 1.3:+31628020 | MS.gene060714:CDS |
ACTGACAGGGTCATTGACAA+TGG | 0.674175 | 1.3:+31630225 | MS.gene060714:CDS |
TCAGAAACCACTGTGACCCA+TGG | 0.675916 | 1.3:+31627859 | MS.gene060714:CDS |
AAGTGAGAAGTCACCCATGG+TGG | 0.677906 | 1.3:+31628912 | MS.gene060714:CDS |
TGAAACCCTAGATGGGTCTG+TGG | 0.684006 | 1.3:+31627897 | MS.gene060714:CDS |
TCAACAATCTGATGTACGTG+AGG | 0.685189 | 1.3:+31628383 | MS.gene060714:CDS |
TTTCACACCATGGGTCACAG+TGG | 0.691236 | 1.3:-31627866 | None:intergenic |
CGCAGTAGTTGGTAGTACAG+GGG | 0.698998 | 1.3:+31628158 | MS.gene060714:CDS |
TTGCCAGAAATACAACATTG+TGG | 0.702327 | 1.3:+31629430 | MS.gene060714:CDS |
TTGTCATCTATATAACCAGG+AGG | 0.713037 | 1.3:-31630477 | None:intergenic |
CCAGAAATACAACATTGTGG+AGG | 0.718025 | 1.3:+31629433 | MS.gene060714:CDS |
TAGACGGTGAAGATCAACAA+GGG | 0.719756 | 1.3:+31628415 | MS.gene060714:CDS |
AGAAAAGTATACTCTCCAAG+GGG | 0.750501 | 1.3:-31630027 | None:intergenic |
CCCTGTACTACCAACTACTG+CGG | 0.751957 | 1.3:-31628157 | None:intergenic |
ATAGCTGACAACGATGTGAG+CGG | 0.753803 | 1.3:+31628342 | MS.gene060714:CDS |
ATAGACGGTGAAGATCAACA+AGG | 0.790484 | 1.3:+31628414 | MS.gene060714:CDS |
TGAAACCGTGAATCACACCG+CGG | 0.851006 | 1.3:+31628449 | MS.gene060714:CDS |
TCAGACAGTAGAGAACACCG+GGG | 0.900900 | 1.3:+31629219 | MS.gene060714:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATATTCTATAAGATTCAA+AGG | - | chr1.3:31629307-31629326 | None:intergenic | 20.0% |
!! | ATTGAAAAAGTTAATGAAGT+TGG | + | chr1.3:31628746-31628765 | MS.gene060714:CDS | 20.0% |
!! | TTGAAAAAGTTAATGAAGTT+GGG | + | chr1.3:31628747-31628766 | MS.gene060714:CDS | 20.0% |
!!! | AGAATTTTTTTTCTTGGTAT+AGG | - | chr1.3:31630427-31630446 | None:intergenic | 20.0% |
!!! | GAATTTTTTTTCTTGGTATA+GGG | - | chr1.3:31630426-31630445 | None:intergenic | 20.0% |
! | AAAGCGTAAATATAAGTTCA+AGG | + | chr1.3:31629555-31629574 | MS.gene060714:CDS | 25.0% |
! | AAGAAATAAGTATCACACAT+GGG | + | chr1.3:31629248-31629267 | MS.gene060714:CDS | 25.0% |
! | ATTTATTATCTTGTGATCTG+CGG | - | chr1.3:31628229-31628248 | None:intergenic | 25.0% |
! | GACCATATTAACTTCAAAAT+TGG | - | chr1.3:31630811-31630830 | None:intergenic | 25.0% |
! | TCTTCAAATTCAAATGTTTC+AGG | - | chr1.3:31630186-31630205 | None:intergenic | 25.0% |
!! | AACAAAATGTTTAAGCGTTT+TGG | + | chr1.3:31630564-31630583 | MS.gene060714:CDS | 25.0% |
!! | AACGCTTAAACATTTTGTTA+AGG | - | chr1.3:31630563-31630582 | None:intergenic | 25.0% |
!! | ACAAAGTCATCGTTTAAAAT+CGG | + | chr1.3:31629790-31629809 | MS.gene060714:CDS | 25.0% |
!! | ACTTATATTTACGCTTTTGA+CGG | - | chr1.3:31629552-31629571 | None:intergenic | 25.0% |
!!! | ATCTAAGCTAAAGCATTTTA+GGG | + | chr1.3:31629048-31629067 | MS.gene060714:CDS | 25.0% |
!!! | CTCCAATTTTGAAGTTAATA+TGG | + | chr1.3:31630806-31630825 | MS.gene060714:CDS | 25.0% |
!!! | CTTGCTTTTAATCGTTTTAA+GGG | + | chr1.3:31629397-31629416 | MS.gene060714:CDS | 25.0% |
!!! | GCTTTCAGAATTTTTTTTCT+TGG | - | chr1.3:31630433-31630452 | None:intergenic | 25.0% |
AAACTAAGAGATAGAAAAGC+CGG | + | chr1.3:31628776-31628795 | MS.gene060714:CDS | 30.0% | |
AGAAATAAGTATCACACATG+GGG | + | chr1.3:31629249-31629268 | MS.gene060714:CDS | 30.0% | |
ATCCATCAAAGAAGGAAAAA+AGG | + | chr1.3:31629587-31629606 | MS.gene060714:CDS | 30.0% | |
CAAGAAATAAGTATCACACA+TGG | + | chr1.3:31629247-31629266 | MS.gene060714:CDS | 30.0% | |
CATCGTCAACAAAAAATGAA+TGG | - | chr1.3:31629471-31629490 | None:intergenic | 30.0% | |
GCTAAGAAGTTCAACATATT+TGG | + | chr1.3:31630684-31630703 | MS.gene060714:CDS | 30.0% | |
GGAAAAAACACCAATGAAAT+CGG | - | chr1.3:31628499-31628518 | None:intergenic | 30.0% | |
TAGTTCAGAAATAGTTCATC+AGG | + | chr1.3:31628823-31628842 | MS.gene060714:CDS | 30.0% | |
TCAACAAAAAATGAATGGTC+CGG | - | chr1.3:31629466-31629485 | None:intergenic | 30.0% | |
TTTCAGAAATTCTGTAGTTG+TGG | + | chr1.3:31630080-31630099 | MS.gene060714:CDS | 30.0% | |
! | ATTTTACGTACGGATACATT+TGG | + | chr1.3:31630120-31630139 | MS.gene060714:CDS | 30.0% |
! | CCTATTTCGTTGCATATTTT+GGG | + | chr1.3:31628999-31629018 | MS.gene060714:CDS | 30.0% |
! | CTATTTCGTTGCATATTTTG+GGG | + | chr1.3:31629000-31629019 | MS.gene060714:CDS | 30.0% |
! | CTGACTTTTAATCATGTCAT+AGG | - | chr1.3:31629203-31629222 | None:intergenic | 30.0% |
! | CTTATATTTACGCTTTTGAC+GGG | - | chr1.3:31629551-31629570 | None:intergenic | 30.0% |
! | GATTTTAAACGATGACTTTG+TGG | - | chr1.3:31629791-31629810 | None:intergenic | 30.0% |
! | TATATAACCAGGAGGTTTTT+CGG | - | chr1.3:31630472-31630491 | None:intergenic | 30.0% |
! | TCCTATTTCGTTGCATATTT+TGG | + | chr1.3:31628998-31629017 | MS.gene060714:CDS | 30.0% |
! | TTGGAAAGAGATTTTACGTA+CGG | + | chr1.3:31630110-31630129 | MS.gene060714:CDS | 30.0% |
! | TTGTTAAGGTTTGCTTCTAA+GGG | - | chr1.3:31630549-31630568 | None:intergenic | 30.0% |
! | TTTGTTAAGGTTTGCTTCTA+AGG | - | chr1.3:31630550-31630569 | None:intergenic | 30.0% |
!! | CATCTAAGCTAAAGCATTTT+AGG | + | chr1.3:31629047-31629066 | MS.gene060714:CDS | 30.0% |
!! | GCTTGCTTTTAATCGTTTTA+AGG | + | chr1.3:31629396-31629415 | MS.gene060714:CDS | 30.0% |
!!! | ATCCTTTTTTCCTTCTTTGA+TGG | - | chr1.3:31629592-31629611 | None:intergenic | 30.0% |
AAAGTCAACAAGGAGTCAAA+TGG | + | chr1.3:31628713-31628732 | MS.gene060714:CDS | 35.0% | |
AAATCGGTGATTGTATTCGT+CGG | + | chr1.3:31629806-31629825 | MS.gene060714:CDS | 35.0% | |
AACAATCGGTGACTTCAATA+TGG | + | chr1.3:31628119-31628138 | MS.gene060714:CDS | 35.0% | |
AAGATATGAGCGACACATAT+TGG | + | chr1.3:31630202-31630221 | MS.gene060714:CDS | 35.0% | |
AAGCACAATTAATAGCACTC+TGG | - | chr1.3:31629120-31629139 | None:intergenic | 35.0% | |
AAGTTCATAACAAGTTCAGC+AGG | - | chr1.3:31630507-31630526 | None:intergenic | 35.0% | |
ACAGTTGTCGAAACAACAAT+CGG | + | chr1.3:31628105-31628124 | MS.gene060714:CDS | 35.0% | |
ATAGGGCTTACGATTAACTT+GGG | - | chr1.3:31630409-31630428 | None:intergenic | 35.0% | |
ATCATGTCATAGGTGTCTTT+AGG | - | chr1.3:31629193-31629212 | None:intergenic | 35.0% | |
ATTCCTATGCTCTTCAATTG+TGG | - | chr1.3:31629083-31629102 | None:intergenic | 35.0% | |
CAACAAAAAATGAATGGTCC+GGG | - | chr1.3:31629465-31629484 | None:intergenic | 35.0% | |
CCCAAAATATGCAACGAAAT+AGG | - | chr1.3:31629002-31629021 | None:intergenic | 35.0% | |
CGGATACATTTGGTATTAAG+AGG | + | chr1.3:31630130-31630149 | MS.gene060714:CDS | 35.0% | |
CTAGAACACTTCCTTATAGA+AGG | - | chr1.3:31629856-31629875 | None:intergenic | 35.0% | |
CTGCCAAAAGAAAAAGAAGA+AGG | + | chr1.3:31628857-31628876 | MS.gene060714:CDS | 35.0% | |
GACACATCTGATTCATTATC+AGG | - | chr1.3:31629919-31629938 | None:intergenic | 35.0% | |
GCAACTCCTGTAGTTAAAAA+AGG | + | chr1.3:31629520-31629539 | MS.gene060714:CDS | 35.0% | |
GCATTGTCATCTATATAACC+AGG | - | chr1.3:31630483-31630502 | None:intergenic | 35.0% | |
GTTGTAGAATTTGAAGAAGC+CGG | + | chr1.3:31628003-31628022 | MS.gene060714:CDS | 35.0% | |
TAAGAAATGTGTAGATGCAG+AGG | + | chr1.3:31630647-31630666 | MS.gene060714:CDS | 35.0% | |
TACAATCGGTGACTTTAGTA+TGG | + | chr1.3:31628188-31628207 | MS.gene060714:CDS | 35.0% | |
TATAGGGCTTACGATTAACT+TGG | - | chr1.3:31630410-31630429 | None:intergenic | 35.0% | |
TATTGAGACTGAGGAAAACT+TGG | + | chr1.3:31628613-31628632 | MS.gene060714:CDS | 35.0% | |
TCTGTTTCAGATTCCTTAAG+TGG | - | chr1.3:31630591-31630610 | None:intergenic | 35.0% | |
TGGAAAGGAAAAAGTCAACA+AGG | + | chr1.3:31628703-31628722 | MS.gene060714:CDS | 35.0% | |
TTCTCTCTCAGATATGGTTT+GGG | + | chr1.3:31628886-31628905 | MS.gene060714:CDS | 35.0% | |
TTGCCAGAAATACAACATTG+TGG | + | chr1.3:31629430-31629449 | MS.gene060714:CDS | 35.0% | |
TTGTAGAATTTGAAGAAGCC+GGG | + | chr1.3:31628004-31628023 | MS.gene060714:CDS | 35.0% | |
TTGTCATCTATATAACCAGG+AGG | - | chr1.3:31630480-31630499 | None:intergenic | 35.0% | |
TTTCTCTCTCAGATATGGTT+TGG | + | chr1.3:31628885-31628904 | MS.gene060714:CDS | 35.0% | |
! | ACTTATTTCTTGTTGAACCC+CGG | - | chr1.3:31629239-31629258 | None:intergenic | 35.0% |
! | AGAAAAGTATACTCTCCAAG+GGG | - | chr1.3:31630030-31630049 | None:intergenic | 35.0% |
! | ATATAACCAGGAGGTTTTTC+GGG | - | chr1.3:31630471-31630490 | None:intergenic | 35.0% |
! | CAGAAAAGTATACTCTCCAA+GGG | - | chr1.3:31630031-31630050 | None:intergenic | 35.0% |
! | GAGTGCTATTAATTGTGCTT+TGG | + | chr1.3:31629120-31629139 | MS.gene060714:CDS | 35.0% |
! | TCAGAAAAGTATACTCTCCA+AGG | - | chr1.3:31630032-31630051 | None:intergenic | 35.0% |
! | TCGCCTTCTTCTTTTTCTTT+TGG | - | chr1.3:31628863-31628882 | None:intergenic | 35.0% |
! | TTTTCTCCCATCTTGCATTT+CGG | - | chr1.3:31629740-31629759 | None:intergenic | 35.0% |
!! | AAGATATCTGCCGATTTCAT+TGG | + | chr1.3:31628486-31628505 | MS.gene060714:intron | 35.0% |
!! | GGAGAGTATACTTTTCTGAA+TGG | + | chr1.3:31630033-31630052 | MS.gene060714:CDS | 35.0% |
!! | TGAACTATTTCTGAACTACC+AGG | - | chr1.3:31628821-31628840 | None:intergenic | 35.0% |
!!! | GTGGTTTCTGAAACATTTTC+TGG | - | chr1.3:31627850-31627869 | None:intergenic | 35.0% |
!!! | GTTTTTTCCAGCTTAACTAG+TGG | + | chr1.3:31628510-31628529 | MS.gene060714:intron | 35.0% |
!!! | TTTTTCTGGTTTTTCCGTGA+TGG | - | chr1.3:31630306-31630325 | None:intergenic | 35.0% |
AACACTATCCGAGTTTCCTA+CGG | + | chr1.3:31629330-31629349 | MS.gene060714:CDS | 40.0% | |
AATAAGTATCACACATGGGG+TGG | + | chr1.3:31629252-31629271 | MS.gene060714:CDS | 40.0% | |
AATCGGTGACTTCAATATGG+TGG | + | chr1.3:31628122-31628141 | MS.gene060714:CDS | 40.0% | |
AATCGGTGACTTTAGTATGG+TGG | + | chr1.3:31628191-31628210 | MS.gene060714:CDS | 40.0% | |
AATCGGTGATTGTATTCGTC+GGG | + | chr1.3:31629807-31629826 | MS.gene060714:CDS | 40.0% | |
ACACTCAAGTTACTGACCAA+GGG | + | chr1.3:31628660-31628679 | MS.gene060714:CDS | 40.0% | |
AGAGATCGAAAACCATTTCC+TGG | - | chr1.3:31630788-31630807 | None:intergenic | 40.0% | |
AGGATGTCAGACCTAATGAA+TGG | + | chr1.3:31629607-31629626 | MS.gene060714:CDS | 40.0% | |
ATAGACGGTGAAGATCAACA+AGG | + | chr1.3:31628414-31628433 | MS.gene060714:CDS | 40.0% | |
ATCTTGCATTTCGGAGTCAT+CGG | - | chr1.3:31629731-31629750 | None:intergenic | 40.0% | |
ATGACTCCGAAATGCAAGAT+GGG | + | chr1.3:31629731-31629750 | MS.gene060714:CDS | 40.0% | |
CAAGTAACCACTAGTTAAGC+TGG | - | chr1.3:31628520-31628539 | None:intergenic | 40.0% | |
CACCTGAACATTCCAAGAAA+AGG | + | chr1.3:31629680-31629699 | MS.gene060714:CDS | 40.0% | |
CACTTGGAGTGTAATTAAGC+TGG | - | chr1.3:31630728-31630747 | None:intergenic | 40.0% | |
CCAGAAATACAACATTGTGG+AGG | + | chr1.3:31629433-31629452 | MS.gene060714:CDS | 40.0% | |
CCTCCACAATGTTGTATTTC+TGG | - | chr1.3:31629436-31629455 | None:intergenic | 40.0% | |
CTTCTTACCTTTAATCTCCG+CGG | - | chr1.3:31628469-31628488 | None:intergenic | 40.0% | |
GGATGTCAGACCTAATGAAT+GGG | + | chr1.3:31629608-31629627 | MS.gene060714:CDS | 40.0% | |
GGTCATAATGAAGTGGTTTG+TGG | + | chr1.3:31627928-31627947 | MS.gene060714:CDS | 40.0% | |
TAAGGGAACAGAATTGAGCT+CGG | - | chr1.3:31630532-31630551 | None:intergenic | 40.0% | |
TAGACGGTGAAGATCAACAA+GGG | + | chr1.3:31628415-31628434 | MS.gene060714:CDS | 40.0% | |
TCAACAATCTGATGTACGTG+AGG | + | chr1.3:31628383-31628402 | MS.gene060714:CDS | 40.0% | |
TCAGGTGAAACCAGATTATC+TGG | - | chr1.3:31629667-31629686 | None:intergenic | 40.0% | |
TCTCAAGACGAGTCGAATAT+GGG | + | chr1.3:31629149-31629168 | MS.gene060714:CDS | 40.0% | |
TCTCTCTCAGATATGGTTTG+GGG | + | chr1.3:31628887-31628906 | MS.gene060714:CDS | 40.0% | |
TTGGGGACAAAACATTTGCA+TGG | + | chr1.3:31629017-31629036 | MS.gene060714:CDS | 40.0% | |
! | AATCTGGAGTCCCATTCATT+AGG | - | chr1.3:31629621-31629640 | None:intergenic | 40.0% |
! | AGCAATGATGATGCTTTAGC+AGG | + | chr1.3:31628252-31628271 | MS.gene060714:CDS | 40.0% |
! | CCTTGAAAAGTGCAACTCAA+AGG | + | chr1.3:31628311-31628330 | MS.gene060714:CDS | 40.0% |
! | CGAGTTTTCTCTCTCAGATA+TGG | + | chr1.3:31628880-31628899 | MS.gene060714:CDS | 40.0% |
! | CTCCTTTTCTTGGAATGTTC+AGG | - | chr1.3:31629685-31629704 | None:intergenic | 40.0% |
! | CTTCACAAGTGCATGTTTTC+CGG | - | chr1.3:31628798-31628817 | None:intergenic | 40.0% |
! | CTTTAGCAGGTAGTTCTGTA+GGG | + | chr1.3:31628265-31628284 | MS.gene060714:CDS | 40.0% |
! | TCTCCACAATTGAAGAGCAT+AGG | + | chr1.3:31629077-31629096 | MS.gene060714:CDS | 40.0% |
! | TGGTTTGTGGTGATTCTGTT+GGG | + | chr1.3:31627941-31627960 | MS.gene060714:CDS | 40.0% |
! | TTTAGCAGGTAGTTCTGTAG+GGG | + | chr1.3:31628266-31628285 | MS.gene060714:CDS | 40.0% |
!! | AAGTTGATAGAGTAAGCAGC+CGG | + | chr1.3:31630610-31630629 | MS.gene060714:CDS | 40.0% |
!! | GAGTTGGGTAACGTTGTTTT+GGG | + | chr1.3:31628048-31628067 | MS.gene060714:CDS | 40.0% |
!! | TAAGCGTTTTGGACCACTTA+AGG | + | chr1.3:31630575-31630594 | MS.gene060714:CDS | 40.0% |
!! | TGAGTTGGGTAACGTTGTTT+TGG | + | chr1.3:31628047-31628066 | MS.gene060714:CDS | 40.0% |
!!! | CCTTTGAGTTGCACTTTTCA+AGG | - | chr1.3:31628314-31628333 | None:intergenic | 40.0% |
!!! | CTGGTTGTTCGTCTTTTTTC+TGG | - | chr1.3:31630320-31630339 | None:intergenic | 40.0% |
!!! | GTGCTGCCTTTTTTAACTAC+AGG | - | chr1.3:31629529-31629548 | None:intergenic | 40.0% |
AAACATGCACTTGTGAAGCC+TGG | + | chr1.3:31628800-31628819 | MS.gene060714:CDS | 45.0% | |
AAACCCCCAATAGTTGGAAC+TGG | + | chr1.3:31630156-31630175 | MS.gene060714:CDS | 45.0% | |
AACCAGTGCAACAACCATCA+CGG | + | chr1.3:31630289-31630308 | MS.gene060714:CDS | 45.0% | |
AACCCCCAATAGTTGGAACT+GGG | + | chr1.3:31630157-31630176 | MS.gene060714:CDS | 45.0% | |
AATCACACCGCGGAGATTAA+AGG | + | chr1.3:31628459-31628478 | MS.gene060714:CDS | 45.0% | |
ACAACCCTAGATTCCTCAAC+CGG | - | chr1.3:31627988-31628007 | None:intergenic | 45.0% | |
ACAGGGGTCGAAACTACAAT+CGG | + | chr1.3:31628174-31628193 | MS.gene060714:CDS | 45.0% | |
ACATACCACAGACCCATCTA+GGG | - | chr1.3:31627905-31627924 | None:intergenic | 45.0% | |
ACCACCAACTTTCACACCAT+GGG | - | chr1.3:31627878-31627897 | None:intergenic | 45.0% | |
ACTGACAGGGTCATTGACAA+TGG | + | chr1.3:31630225-31630244 | MS.gene060714:CDS | 45.0% | |
AGATTCCTCAACCGGATACT+CGG | - | chr1.3:31627980-31627999 | None:intergenic | 45.0% | |
AGGAAGAAACCCCCAATAGT+TGG | + | chr1.3:31630150-31630169 | MS.gene060714:CDS | 45.0% | |
AGTATCCGGTTGAGGAATCT+AGG | + | chr1.3:31627980-31627999 | MS.gene060714:CDS | 45.0% | |
AGTCAGACAGTAGAGAACAC+CGG | + | chr1.3:31629217-31629236 | MS.gene060714:CDS | 45.0% | |
ATAGCTGACAACGATGTGAG+CGG | + | chr1.3:31628342-31628361 | MS.gene060714:CDS | 45.0% | |
ATGTGGGGGTCATAATGAAG+TGG | + | chr1.3:31627921-31627940 | MS.gene060714:CDS | 45.0% | |
ATTCTGTTGGGGTAGTTGGT+GGG | + | chr1.3:31627953-31627972 | MS.gene060714:CDS | 45.0% | |
CACTGTGCATCCATCAAAGA+AGG | + | chr1.3:31629579-31629598 | MS.gene060714:CDS | 45.0% | |
CCTGATCATCCTCATCAGTT+GGG | - | chr1.3:31629945-31629964 | None:intergenic | 45.0% | |
CGACACATATTGGACTGACA+GGG | + | chr1.3:31630212-31630231 | MS.gene060714:CDS | 45.0% | |
CGTGAGGAGATGCAAATAGA+CGG | + | chr1.3:31628399-31628418 | MS.gene060714:CDS | 45.0% | |
GACACTCAAGTTACTGACCA+AGG | + | chr1.3:31628659-31628678 | MS.gene060714:CDS | 45.0% | |
GATGACTCCGAAATGCAAGA+TGG | + | chr1.3:31629730-31629749 | MS.gene060714:CDS | 45.0% | |
GCTATCTTCACTTCAGCTTG+TGG | + | chr1.3:31629996-31630015 | MS.gene060714:CDS | 45.0% | |
GGTTTGTGGTGATTCTGTTG+GGG | + | chr1.3:31627942-31627961 | MS.gene060714:CDS | 45.0% | |
GTATCCGGTTGAGGAATCTA+GGG | + | chr1.3:31627981-31628000 | MS.gene060714:CDS | 45.0% | |
GTCAACAAGGAGTCAAATGG+TGG | + | chr1.3:31628716-31628735 | MS.gene060714:CDS | 45.0% | |
GTCTCAAGACGAGTCGAATA+TGG | + | chr1.3:31629148-31629167 | MS.gene060714:CDS | 45.0% | |
GTGACCCAGTTCCAACTATT+GGG | - | chr1.3:31630164-31630183 | None:intergenic | 45.0% | |
GTGAGAGATGAAGCAGTAGT+TGG | + | chr1.3:31628078-31628097 | MS.gene060714:CDS | 45.0% | |
TAGATGGGTCTGTGGTATGT+GGG | + | chr1.3:31627905-31627924 | MS.gene060714:CDS | 45.0% | |
TCAAAGTCTCCATCTGCCTT+TGG | - | chr1.3:31629889-31629908 | None:intergenic | 45.0% | |
TCACTGCGTCACCTTCTATA+AGG | + | chr1.3:31629842-31629861 | MS.gene060714:CDS | 45.0% | |
TCCTGATCATCCTCATCAGT+TGG | - | chr1.3:31629946-31629965 | None:intergenic | 45.0% | |
TCTTAAAGACCACTCTTGCC+CGG | - | chr1.3:31630632-31630651 | None:intergenic | 45.0% | |
TGACCCAGTTCCAACTATTG+GGG | - | chr1.3:31630163-31630182 | None:intergenic | 45.0% | |
TGCAACACAAGACCAGGAAA+TGG | + | chr1.3:31630773-31630792 | MS.gene060714:CDS | 45.0% | |
TGTTGATGCAACACAAGACC+AGG | + | chr1.3:31630767-31630786 | MS.gene060714:CDS | 45.0% | |
TTCTAGTGACCGATCTCCAA+AGG | + | chr1.3:31629870-31629889 | MS.gene060714:CDS | 45.0% | |
! | GCTTTAGCAGGTAGTTCTGT+AGG | + | chr1.3:31628264-31628283 | MS.gene060714:CDS | 45.0% |
! | GTGGTTTGTGGTGATTCTGT+TGG | + | chr1.3:31627940-31627959 | MS.gene060714:CDS | 45.0% |
! | TTTGGAGCTTGTGACTGCTA+AGG | + | chr1.3:31629366-31629385 | MS.gene060714:CDS | 45.0% |
! | TTTGGTGACTTAGCAGAGAC+TGG | - | chr1.3:31630339-31630358 | None:intergenic | 45.0% |
! | TTTTCCTTTCCATCGCGCAA+CGG | - | chr1.3:31628695-31628714 | None:intergenic | 45.0% |
!! | AGTTGATAGAGTAAGCAGCC+GGG | + | chr1.3:31630611-31630630 | MS.gene060714:CDS | 45.0% |
!! | ATTCTCCTGATGGTGATGGT+CGG | + | chr1.3:31629638-31629657 | MS.gene060714:CDS | 45.0% |
!! | GAAGCTTTGAACAGTGCACT+TGG | - | chr1.3:31630744-31630763 | None:intergenic | 45.0% |
!! | TTGGTGGTGAAACCCTAGAT+GGG | + | chr1.3:31627890-31627909 | MS.gene060714:CDS | 45.0% |
!!! | TGCACTGGTTTTTGTTGCAC+TGG | - | chr1.3:31630279-31630298 | None:intergenic | 45.0% |
!!! | TGGGTAACGTTGTTTTGGGA+GGG | + | chr1.3:31628052-31628071 | MS.gene060714:CDS | 45.0% |
!!! | TTGGGTAACGTTGTTTTGGG+AGG | + | chr1.3:31628051-31628070 | MS.gene060714:CDS | 45.0% |
AAACGATCAAAGCCAGCCGT+AGG | - | chr1.3:31629349-31629368 | None:intergenic | 50.0% | |
AAAGCCAGCCGTAGGAAACT+CGG | - | chr1.3:31629341-31629360 | None:intergenic | 50.0% | |
AAGTGAGAAGTCACCCATGG+TGG | + | chr1.3:31628912-31628931 | MS.gene060714:CDS | 50.0% | |
AATCTCCGCGGTGTGATTCA+CGG | - | chr1.3:31628457-31628476 | None:intergenic | 50.0% | |
ACCCATGGTGTGAAAGTTGG+TGG | + | chr1.3:31627874-31627893 | MS.gene060714:CDS | 50.0% | |
AGATGGGTCTGTGGTATGTG+GGG | + | chr1.3:31627906-31627925 | MS.gene060714:CDS | 50.0% | |
ATCCGTCAGATGCATCTGAG+AGG | + | chr1.3:31628951-31628970 | MS.gene060714:CDS | 50.0% | |
ATTTCGGAGTCATCGGCGTA+GGG | - | chr1.3:31629724-31629743 | None:intergenic | 50.0% | |
CAAGGAGTCAAATGGTGGTC+AGG | + | chr1.3:31628721-31628740 | MS.gene060714:CDS | 50.0% | |
CACATACCACAGACCCATCT+AGG | - | chr1.3:31627906-31627925 | None:intergenic | 50.0% | |
CACCACCAACTTTCACACCA+TGG | - | chr1.3:31627879-31627898 | None:intergenic | 50.0% | |
CCATCACCATCAGGAGAATC+TGG | - | chr1.3:31629637-31629656 | None:intergenic | 50.0% | |
CCCAACTGATGAGGATGATC+AGG | + | chr1.3:31629942-31629961 | MS.gene060714:CDS | 50.0% | |
CCCTGTACTACCAACTACTG+CGG | - | chr1.3:31628160-31628179 | None:intergenic | 50.0% | |
CTAGATGGGTCTGTGGTATG+TGG | + | chr1.3:31627904-31627923 | MS.gene060714:CDS | 50.0% | |
CTGTAGTTGTGGCTGCTGAT+TGG | + | chr1.3:31630091-31630110 | MS.gene060714:CDS | 50.0% | |
GACCCAGTTCCAACTATTGG+GGG | - | chr1.3:31630162-31630181 | None:intergenic | 50.0% | |
GACGGATCAAATATCTGCCC+AGG | - | chr1.3:31628938-31628957 | None:intergenic | 50.0% | |
GATTCTGTTGGGGTAGTTGG+TGG | + | chr1.3:31627952-31627971 | MS.gene060714:CDS | 50.0% | |
GCAAAGTGAGAAGTCACCCA+TGG | + | chr1.3:31628909-31628928 | MS.gene060714:CDS | 50.0% | |
GCGACACATATTGGACTGAC+AGG | + | chr1.3:31630211-31630230 | MS.gene060714:CDS | 50.0% | |
GGTGACCCAGTTCCAACTAT+TGG | - | chr1.3:31630165-31630184 | None:intergenic | 50.0% | |
GGTGATTCTGTTGGGGTAGT+TGG | + | chr1.3:31627949-31627968 | MS.gene060714:CDS | 50.0% | |
GTCAGACAGTAGAGAACACC+GGG | + | chr1.3:31629218-31629237 | MS.gene060714:CDS | 50.0% | |
GTGACCCATGGTGTGAAAGT+TGG | + | chr1.3:31627871-31627890 | MS.gene060714:CDS | 50.0% | |
TATCTTGTGATCTGCGGCCT+CGG | - | chr1.3:31628223-31628242 | None:intergenic | 50.0% | |
TCAGAAACCACTGTGACCCA+TGG | + | chr1.3:31627859-31627878 | MS.gene060714:CDS | 50.0% | |
TCAGACAGTAGAGAACACCG+GGG | + | chr1.3:31629219-31629238 | MS.gene060714:CDS | 50.0% | |
TCCGTCAGATGCATCTGAGA+GGG | + | chr1.3:31628952-31628971 | MS.gene060714:CDS | 50.0% | |
TGAAACCCTAGATGGGTCTG+TGG | + | chr1.3:31627897-31627916 | MS.gene060714:CDS | 50.0% | |
TGAAACCGTGAATCACACCG+CGG | + | chr1.3:31628449-31628468 | MS.gene060714:CDS | 50.0% | |
TGGTCGGACTCCAGATAATC+TGG | + | chr1.3:31629654-31629673 | MS.gene060714:CDS | 50.0% | |
TGTGTCTCTCCCAACTGATG+AGG | + | chr1.3:31629933-31629952 | MS.gene060714:CDS | 50.0% | |
TTCCGTGATGGTTGTTGCAC+TGG | - | chr1.3:31630294-31630313 | None:intergenic | 50.0% | |
TTCTGTTCGTGCAGGTTCGT+CGG | + | chr1.3:31628586-31628605 | MS.gene060714:intron | 50.0% | |
TTTCACACCATGGGTCACAG+TGG | - | chr1.3:31627869-31627888 | None:intergenic | 50.0% | |
! | AGCGCTCTTGCTCCTTTTCT+TGG | - | chr1.3:31629695-31629714 | None:intergenic | 50.0% |
! | CCAGATTCTCCTGATGGTGA+TGG | + | chr1.3:31629634-31629653 | MS.gene060714:CDS | 50.0% |
! | CTCCATCTGCCTTTGGAGAT+CGG | - | chr1.3:31629882-31629901 | None:intergenic | 50.0% |
! | GCTTGTAGTTCTGTTCGTGC+AGG | + | chr1.3:31628578-31628597 | MS.gene060714:intron | 50.0% |
! | GGCTTACGATTAACTTGGGC+TGG | - | chr1.3:31630405-31630424 | None:intergenic | 50.0% |
! | GGCTTTGGTGACTTAACAGC+TGG | - | chr1.3:31630363-31630382 | None:intergenic | 50.0% |
! | GGTGACTTAACAGCTGGCTT+TGG | - | chr1.3:31630357-31630376 | None:intergenic | 50.0% |
! | GTCGGTGTCTATTGAGACTG+AGG | + | chr1.3:31628604-31628623 | MS.gene060714:CDS | 50.0% |
! | TGTGAGCGGTGTTTCTGCTT+TGG | + | chr1.3:31628356-31628375 | MS.gene060714:CDS | 50.0% |
! | TTCTGAAAGCAATCCTGCCG+AGG | + | chr1.3:31630443-31630462 | MS.gene060714:CDS | 50.0% |
!! | ACATTGTGGAGGTGTTGACC+CGG | + | chr1.3:31629444-31629463 | MS.gene060714:CDS | 50.0% |
!! | CCGCAGTAGTTGGTAGTACA+GGG | + | chr1.3:31628157-31628176 | MS.gene060714:CDS | 50.0% |
!! | CGATTAACTTGGGCTGGCTT+TGG | - | chr1.3:31630399-31630418 | None:intergenic | 50.0% |
!! | CGCAGTAGTTGGTAGTACAG+GGG | + | chr1.3:31628158-31628177 | MS.gene060714:CDS | 50.0% |
!! | GTTGGTGGTGAAACCCTAGA+TGG | + | chr1.3:31627889-31627908 | MS.gene060714:CDS | 50.0% |
!! | TACGGCTGGCTTTGATCGTT+TGG | + | chr1.3:31629348-31629367 | MS.gene060714:CDS | 50.0% |
!!! | GGGTAACGTTGTTTTGGGAG+GGG | + | chr1.3:31628053-31628072 | MS.gene060714:CDS | 50.0% |
AATATCTGCCCAGGCCACCA+TGG | - | chr1.3:31628929-31628948 | None:intergenic | 55.0% | |
AATGCGGCGGCAGTTGAGTT+GGG | + | chr1.3:31628033-31628052 | MS.gene060714:CDS | 55.0% | |
ACTACCAACTACTGCGGCCT+CGG | - | chr1.3:31628154-31628173 | None:intergenic | 55.0% | |
AGAAGCCGGGAGTGAGAATG+CGG | + | chr1.3:31628017-31628036 | MS.gene060714:CDS | 55.0% | |
ATATCTGCCCAGGCCACCAT+GGG | - | chr1.3:31628928-31628947 | None:intergenic | 55.0% | |
CATTTCGGAGTCATCGGCGT+AGG | - | chr1.3:31629725-31629744 | None:intergenic | 55.0% | |
CTATCCGAGTTTCCTACGGC+TGG | + | chr1.3:31629334-31629353 | MS.gene060714:CDS | 55.0% | |
CTTGTGGCACAAGAACCCCT+TGG | + | chr1.3:31630012-31630031 | MS.gene060714:CDS | 55.0% | |
GACCGATCTCCAAAGGCAGA+TGG | + | chr1.3:31629877-31629896 | MS.gene060714:CDS | 55.0% | |
GATGGGTCTGTGGTATGTGG+GGG | + | chr1.3:31627907-31627926 | MS.gene060714:CDS | 55.0% | |
GCCCTCTCAGATGCATCTGA+CGG | - | chr1.3:31628956-31628975 | None:intergenic | 55.0% | |
GGGACTCCAGATTCTCCTGA+TGG | + | chr1.3:31629628-31629647 | MS.gene060714:CDS | 55.0% | |
!! | AGTTGGTGGGACCGAGTATC+CGG | + | chr1.3:31627966-31627985 | MS.gene060714:CDS | 55.0% |
!! | CAATATGGTGGATGCTGCCG+AGG | + | chr1.3:31628134-31628153 | MS.gene060714:CDS | 55.0% |
!! | GCCGCAGTAGTTGGTAGTAC+AGG | + | chr1.3:31628156-31628175 | MS.gene060714:CDS | 55.0% |
!! | GGCTTTGGTGACTTGGTAGC+TGG | - | chr1.3:31630384-31630403 | None:intergenic | 55.0% |
!! | GGTGACTTGGTAGCTGGCTT+TGG | - | chr1.3:31630378-31630397 | None:intergenic | 55.0% |
!! | TAGTATGGTGGATGCTGCCG+AGG | + | chr1.3:31628203-31628222 | MS.gene060714:CDS | 55.0% |
!! | TGCACTGGTTTCTGTTGCGC+TGG | - | chr1.3:31630264-31630283 | None:intergenic | 55.0% |
!! | TTGGGCTGGCTTTGGTGACT+TGG | - | chr1.3:31630391-31630410 | None:intergenic | 55.0% |
!!! | AGGAGGTTTTTCGGGAGCCT+CGG | - | chr1.3:31630463-31630482 | None:intergenic | 55.0% |
AGAAGTCACCCATGGTGGCC+TGG | + | chr1.3:31628917-31628936 | MS.gene060714:CDS | 60.0% | |
AGTAAGCAGCCGGGCAAGAG+TGG | + | chr1.3:31630620-31630639 | MS.gene060714:CDS | 60.0% | |
GAAGTCACCCATGGTGGCCT+GGG | + | chr1.3:31628918-31628937 | MS.gene060714:CDS | 60.0% | |
GAATGCGGCGGCAGTTGAGT+TGG | + | chr1.3:31628032-31628051 | MS.gene060714:CDS | 60.0% | |
GAGGCTCCCGAAAAACCTCC+TGG | + | chr1.3:31630462-31630481 | MS.gene060714:CDS | 60.0% | |
GGAGTCCGACCATCACCATC+AGG | - | chr1.3:31629646-31629665 | None:intergenic | 60.0% | |
TGCACCGTTGCGCGATGGAA+AGG | + | chr1.3:31628688-31628707 | MS.gene060714:CDS | 60.0% | |
TGGGACCGAGTATCCGGTTG+AGG | + | chr1.3:31627972-31627991 | MS.gene060714:CDS | 60.0% | |
TTCCATCGCGCAACGGTGCA+TGG | - | chr1.3:31628688-31628707 | None:intergenic | 60.0% | |
AGCCATGCACCGTTGCGCGA+TGG | + | chr1.3:31628683-31628702 | MS.gene060714:CDS | 65.0% | |
AGCCGGGAGTGAGAATGCGG+CGG | + | chr1.3:31628020-31628039 | MS.gene060714:CDS | 65.0% | |
GCAACGGTGCATGGCTCCCT+TGG | - | chr1.3:31628679-31628698 | None:intergenic | 65.0% | |
TGCCGCCGCATTCTCACTCC+CGG | - | chr1.3:31628025-31628044 | None:intergenic | 65.0% | |
!!! | GGTTTTTCGGGAGCCTCGGC+AGG | - | chr1.3:31630459-31630478 | None:intergenic | 65.0% |
GCTGCCGAGGCCGCAGTAGT+TGG | + | chr1.3:31628147-31628166 | MS.gene060714:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 31627838 | 31630833 | 31627838 | ID=MS.gene060714 |
chr1.3 | mRNA | 31627838 | 31630833 | 31627838 | ID=MS.gene060714.t1;Parent=MS.gene060714 |
chr1.3 | exon | 31627838 | 31628480 | 31627838 | ID=MS.gene060714.t1.exon1;Parent=MS.gene060714.t1 |
chr1.3 | CDS | 31627838 | 31628480 | 31627838 | ID=cds.MS.gene060714.t1;Parent=MS.gene060714.t1 |
chr1.3 | exon | 31628600 | 31630833 | 31628600 | ID=MS.gene060714.t1.exon2;Parent=MS.gene060714.t1 |
chr1.3 | CDS | 31628600 | 31630833 | 31628600 | ID=cds.MS.gene060714.t1;Parent=MS.gene060714.t1 |
Gene Sequence |
Protein sequence |