Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060732.t1 | XP_003605495.1 | 86.2 | 340 | 18 | 2 | 1 | 311 | 1 | 340 | 9.60E-139 | 503.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060732.t1 | F4HT21 | 49.7 | 302 | 121 | 3 | 1 | 274 | 6 | 304 | 3.8e-67 | 256.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060732.t1 | G7JN55 | 86.2 | 340 | 18 | 2 | 1 | 311 | 1 | 340 | 6.9e-139 | 503.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63514 | MS.gene060732 | PPI |
| MS.gene56256 | MS.gene060732 | PPI |
| MS.gene51627 | MS.gene060732 | PPI |
| MS.gene009458 | MS.gene060732 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060732.t1 | MTR_4g032300 | 87.941 | 340 | 12 | 2 | 1 | 311 | 1 | 340 | 0.0 | 602 |
| MS.gene060732.t1 | MTR_4g032350 | 69.041 | 365 | 59 | 3 | 1 | 311 | 1 | 365 | 3.61e-171 | 479 |
| MS.gene060732.t1 | MTR_4g032220 | 64.943 | 348 | 83 | 3 | 1 | 311 | 2 | 347 | 2.43e-144 | 410 |
| MS.gene060732.t1 | MTR_4g032240 | 60.571 | 350 | 96 | 5 | 1 | 311 | 2 | 348 | 8.13e-138 | 394 |
| MS.gene060732.t1 | MTR_4g032330 | 94.030 | 67 | 4 | 0 | 245 | 311 | 17 | 83 | 1.42e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060732.t1 | AT1G33970 | 54.878 | 328 | 117 | 3 | 1 | 300 | 6 | 330 | 2.21e-105 | 311 |
| MS.gene060732.t1 | AT1G33970 | 54.878 | 328 | 117 | 3 | 1 | 300 | 6 | 330 | 2.21e-105 | 311 |
| MS.gene060732.t1 | AT1G33970 | 54.878 | 328 | 117 | 3 | 1 | 300 | 6 | 330 | 2.21e-105 | 311 |
| MS.gene060732.t1 | AT1G33970 | 54.878 | 328 | 117 | 3 | 1 | 300 | 6 | 330 | 2.21e-105 | 311 |
| MS.gene060732.t1 | AT1G33970 | 54.579 | 273 | 93 | 3 | 1 | 245 | 6 | 275 | 8.96e-85 | 256 |
| MS.gene060732.t1 | AT1G33950 | 45.255 | 274 | 121 | 2 | 17 | 262 | 12 | 284 | 3.30e-75 | 233 |
| MS.gene060732.t1 | AT4G09950 | 41.846 | 325 | 151 | 8 | 4 | 298 | 5 | 321 | 2.40e-72 | 227 |
| MS.gene060732.t1 | AT4G09940 | 42.071 | 309 | 145 | 7 | 3 | 281 | 31 | 335 | 1.82e-71 | 226 |
| MS.gene060732.t1 | AT4G09940 | 42.071 | 309 | 145 | 7 | 3 | 281 | 74 | 378 | 1.26e-70 | 225 |
| MS.gene060732.t1 | AT1G33900 | 41.091 | 275 | 133 | 2 | 11 | 257 | 9 | 282 | 4.62e-69 | 218 |
| MS.gene060732.t1 | AT1G33960 | 44.737 | 266 | 118 | 2 | 15 | 252 | 36 | 300 | 1.07e-68 | 218 |
| MS.gene060732.t1 | AT1G33960 | 44.737 | 266 | 118 | 2 | 15 | 252 | 60 | 324 | 1.79e-68 | 218 |
| MS.gene060732.t1 | AT1G33950 | 43.431 | 274 | 120 | 3 | 17 | 262 | 12 | 278 | 3.33e-68 | 215 |
| MS.gene060732.t1 | AT1G33930 | 41.241 | 274 | 132 | 2 | 6 | 251 | 20 | 292 | 1.99e-64 | 206 |
| MS.gene060732.t1 | AT1G33890 | 42.125 | 273 | 129 | 3 | 13 | 257 | 5 | 276 | 8.77e-63 | 202 |
| MS.gene060732.t1 | AT1G33890 | 42.125 | 273 | 129 | 3 | 13 | 257 | 5 | 276 | 8.77e-63 | 202 |
| MS.gene060732.t1 | AT4G09930 | 38.365 | 318 | 159 | 6 | 22 | 311 | 27 | 335 | 5.03e-57 | 187 |
| MS.gene060732.t1 | AT1G33910 | 41.392 | 273 | 120 | 6 | 15 | 257 | 9 | 271 | 1.64e-56 | 185 |
| MS.gene060732.t1 | AT2G26820 | 35.873 | 315 | 161 | 4 | 16 | 291 | 2 | 314 | 1.01e-55 | 184 |
| MS.gene060732.t1 | AT2G26820 | 35.806 | 310 | 160 | 3 | 21 | 291 | 5 | 314 | 2.07e-55 | 184 |
| MS.gene060732.t1 | AT2G26820 | 35.806 | 310 | 160 | 3 | 21 | 291 | 5 | 314 | 2.90e-54 | 184 |
| MS.gene060732.t1 | AT2G26820 | 37.075 | 294 | 146 | 3 | 21 | 275 | 5 | 298 | 3.68e-53 | 181 |
| MS.gene060732.t1 | AT1G33870 | 37.179 | 234 | 117 | 2 | 46 | 251 | 1 | 232 | 4.04e-48 | 162 |
| MS.gene060732.t1 | AT1G33830 | 39.130 | 207 | 98 | 1 | 21 | 199 | 8 | 214 | 3.67e-46 | 155 |
| MS.gene060732.t1 | AT4G09950 | 38.189 | 254 | 126 | 5 | 74 | 298 | 7 | 258 | 4.08e-44 | 152 |
| MS.gene060732.t1 | AT1G33880 | 44.654 | 159 | 82 | 2 | 21 | 179 | 23 | 175 | 1.79e-42 | 146 |
| MS.gene060732.t1 | AT1G33880 | 44.654 | 159 | 82 | 2 | 21 | 179 | 23 | 175 | 1.79e-42 | 146 |
Find 61 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAATAAAATACCTTTAA+AGG | 0.131663 | 4.4:+71599274 | None:intergenic |
| CGTAGTGTGCAGAAATTATT+TGG | 0.186995 | 4.4:-71599400 | MS.gene060732:CDS |
| TAAAATACCTTTAAAGGTTC+TGG | 0.248901 | 4.4:+71599280 | None:intergenic |
| CACATGATTGTGGTCTTTAC+CGG | 0.249622 | 4.4:-71599361 | MS.gene060732:CDS |
| TCTGTTGGAATTGAACTTCT+TGG | 0.274494 | 4.4:-71599529 | MS.gene060732:CDS |
| TGACTGTCCAGAACCTTTAA+AGG | 0.282159 | 4.4:-71599287 | MS.gene060732:intron |
| TTGAATAACTCATCTCTATA+AGG | 0.283431 | 4.4:+71598899 | None:intergenic |
| GAGACACTGGACGATTATTT+AGG | 0.320276 | 4.4:-71599313 | MS.gene060732:CDS |
| GCAACTGGTAATAGTATTCT+TGG | 0.337733 | 4.4:-71599890 | MS.gene060732:CDS |
| AATAGTCAAGTGCATTGATT+TGG | 0.357598 | 4.4:-71599500 | MS.gene060732:CDS |
| AGTTGCACTCTTGCCATTGC+CGG | 0.395880 | 4.4:+71599907 | None:intergenic |
| AACTCGAGGGCTAGCTCTTC+CGG | 0.409222 | 4.4:-71599854 | MS.gene060732:CDS |
| ATATTCAAAAGAATATATAT+TGG | 0.422703 | 4.4:-71598726 | MS.gene060732:CDS |
| GACAGCATGGATTCCATCCT+TGG | 0.423615 | 4.4:+71599477 | None:intergenic |
| TGAGTTATTCAAAGAACTAA+AGG | 0.437815 | 4.4:-71598888 | MS.gene060732:intron |
| CTCAGTGAATCGTGTTCTTA+CGG | 0.439237 | 4.4:+71599441 | None:intergenic |
| GGCAATGGCAAGAGTGCAAC+TGG | 0.443732 | 4.4:-71599905 | MS.gene060732:CDS |
| ACATGATTGTGGTCTTTACC+GGG | 0.452744 | 4.4:-71599360 | MS.gene060732:CDS |
| ACCAATGTCTTAACATCATT+AGG | 0.462811 | 4.4:+71599944 | None:intergenic |
| GTAGGTTGAGTCAAAGTTGA+GGG | 0.472777 | 4.4:-71598418 | MS.gene060732:intron |
| TTGGTCTTGGTTGGACGTAC+CGG | 0.477769 | 4.4:-71599926 | MS.gene060732:CDS |
| TGCATTGATTTGGCCAAGGA+TGG | 0.480665 | 4.4:-71599490 | MS.gene060732:CDS |
| TTCGCTGCAGAAAGGACAAA+TGG | 0.490581 | 4.4:-71598789 | MS.gene060732:intron |
| TGATGTTAAGACATTGGTCT+TGG | 0.495032 | 4.4:-71599939 | MS.gene060732:CDS |
| TTGGTTGGACGTACCGGCAA+TGG | 0.510282 | 4.4:-71599920 | MS.gene060732:CDS |
| TTCTTCCAATTCATCTCCCC+CGG | 0.516121 | 4.4:+71599342 | None:intergenic |
| GAGGGAAGCAACTACAAGGC+TGG | 0.525548 | 4.4:-71598400 | MS.gene060732:CDS |
| GTTAAGACATTGGTCTTGGT+TGG | 0.532768 | 4.4:-71599935 | MS.gene060732:CDS |
| GCTACTAGTATATCAGAGAA+TGG | 0.540658 | 4.4:+71598221 | None:intergenic |
| TACAAGGCTGGAGCTACGAT+TGG | 0.543348 | 4.4:-71598388 | MS.gene060732:CDS |
| AGATGAATTGGAAGAAAATG+AGG | 0.546063 | 4.4:-71599335 | MS.gene060732:CDS |
| AGAGAGGCTGATTCCATGAA+AGG | 0.551453 | 4.4:-71598749 | MS.gene060732:CDS |
| GCCTAATGATGTTAAGACAT+TGG | 0.554098 | 4.4:-71599945 | MS.gene060732:CDS |
| TGTCAGTAATTCGAGTCAGC+TGG | 0.561062 | 4.4:+71598669 | None:intergenic |
| TTCACACGAGGTGGTGACAC+CGG | 0.575045 | 4.4:+71599835 | None:intergenic |
| GAGAATGGCACAACTAGTCT+CGG | 0.577852 | 4.4:+71598236 | None:intergenic |
| CAAGTGCATTGATTTGGCCA+AGG | 0.581776 | 4.4:-71599494 | MS.gene060732:CDS |
| AGTTGAGGGAAGCAACTACA+AGG | 0.583604 | 4.4:-71598404 | MS.gene060732:CDS |
| TAGTCTCGGCATCTCGCTTG+CGG | 0.584670 | 4.4:+71598250 | None:intergenic |
| TTAAAGGTTCTGGACAGTCA+CGG | 0.601410 | 4.4:+71599290 | None:intergenic |
| TGTAGGTTGAGTCAAAGTTG+AGG | 0.603125 | 4.4:-71598419 | MS.gene060732:intron |
| GGAAGAAAATGAGGAGACAC+TGG | 0.603743 | 4.4:-71599326 | MS.gene060732:CDS |
| GTTAATGTTATCGATAGCCC+AGG | 0.610949 | 4.4:-71599779 | MS.gene060732:intron |
| ACTTGTCTGCATTTCACACG+AGG | 0.612967 | 4.4:+71599823 | None:intergenic |
| AATTGTTGACCACATGATTG+TGG | 0.613289 | 4.4:-71599371 | MS.gene060732:CDS |
| AGAACACCACAAGGACAGCA+TGG | 0.616006 | 4.4:+71599464 | None:intergenic |
| ACTAAGAAGACATCTTGAGC+AGG | 0.618632 | 4.4:-71598286 | MS.gene060732:CDS |
| TGGAATCCATGCTGTCCTTG+TGG | 0.619644 | 4.4:-71599470 | MS.gene060732:CDS |
| ATGATTGTGGTCTTTACCGG+GGG | 0.624456 | 4.4:-71599358 | MS.gene060732:CDS |
| AACATGGTAGTATCACAGAA+TGG | 0.631874 | 4.4:-71598929 | MS.gene060732:CDS |
| AGAGCAAGCTGCAAGACTAG+AGG | 0.632155 | 4.4:-71598361 | MS.gene060732:CDS |
| TGTCTTAACATCATTAGGCG+AGG | 0.652337 | 4.4:+71599949 | None:intergenic |
| CATGATTGTGGTCTTTACCG+GGG | 0.664288 | 4.4:-71599359 | MS.gene060732:CDS |
| TTCTTACGGAGAACACCACA+AGG | 0.679464 | 4.4:+71599455 | None:intergenic |
| TGTCTGCATTTCACACGAGG+TGG | 0.683107 | 4.4:+71599826 | None:intergenic |
| CGGTAAAGACCACAATCATG+TGG | 0.683165 | 4.4:+71599362 | None:intergenic |
| AAGAACACGATTCACTGAGG+AGG | 0.684223 | 4.4:-71599437 | MS.gene060732:CDS |
| ATGGTAGTATCACAGAATGG+TGG | 0.686278 | 4.4:-71598926 | MS.gene060732:CDS |
| CAGACAAGTGAGATGAACGA+TGG | 0.694102 | 4.4:-71599809 | MS.gene060732:CDS |
| GCTGACTCGAATTACTGACA+TGG | 0.703069 | 4.4:-71598666 | MS.gene060732:intron |
| CGTAAGAACACGATTCACTG+AGG | 0.738794 | 4.4:-71599440 | MS.gene060732:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAAATACCTTTAA+AGG | + | chr4.4:71598957-71598976 | None:intergenic | 10.0% |
| !! | ATATTCAAAAGAATATATAT+TGG | - | chr4.4:71599502-71599521 | MS.gene060732:CDS | 10.0% |
| !!! | ATTTTATTTGATCAATTATA+TGG | - | chr4.4:71599783-71599802 | MS.gene060732:CDS | 10.0% |
| !!! | AAACTTTAAAAATTTCACTT+TGG | - | chr4.4:71599096-71599115 | MS.gene060732:intron | 15.0% |
| !!! | AAATTTTGTACAAAAAACAA+TGG | + | chr4.4:71599712-71599731 | None:intergenic | 15.0% |
| !!! | CTTTTCTTTTTATTGTTTAT+TGG | - | chr4.4:71598993-71599012 | MS.gene060732:intron | 15.0% |
| !!! | TTGTTTTTTGTACAAAATTT+TGG | - | chr4.4:71599712-71599731 | MS.gene060732:intron | 15.0% |
| !!! | TTTATTGGATTTTAAACATT+TGG | - | chr4.4:71599008-71599027 | MS.gene060732:intron | 15.0% |
| !!! | AAAAACATTTTTCTGGTTAA+AGG | + | chr4.4:71598661-71598680 | None:intergenic | 20.0% |
| ! | AGTAAGCTTTCTTAATCATT+TGG | - | chr4.4:71599071-71599090 | MS.gene060732:intron | 25.0% |
| ! | ATAAAATTCGGTTGCTAAAT+AGG | + | chr4.4:71598583-71598602 | None:intergenic | 25.0% |
| ! | ATCTTAACATAAGCAGTATT+TGG | - | chr4.4:71598479-71598498 | MS.gene060732:intron | 25.0% |
| ! | ATGTTAAGATGTATTTACCT+GGG | + | chr4.4:71598469-71598488 | None:intergenic | 25.0% |
| ! | TATGTTAAGATGTATTTACC+TGG | + | chr4.4:71598470-71598489 | None:intergenic | 25.0% |
| ! | TGAGTTATTCAAAGAACTAA+AGG | - | chr4.4:71599340-71599359 | MS.gene060732:CDS | 25.0% |
| ! | TTGAATAACTCATCTCTATA+AGG | + | chr4.4:71599332-71599351 | None:intergenic | 25.0% |
| !! | AATTCTCTCTTTTGTAAACA+TGG | - | chr4.4:71599283-71599302 | MS.gene060732:intron | 25.0% |
| !! | ATCCTGTAAAAACATTTTTC+TGG | + | chr4.4:71598668-71598687 | None:intergenic | 25.0% |
| !! | GTTTCTATGGATTTATGTTT+TGG | - | chr4.4:71599045-71599064 | MS.gene060732:intron | 25.0% |
| !! | TAAAATACCTTTAAAGGTTC+TGG | + | chr4.4:71598951-71598970 | None:intergenic | 25.0% |
| !! | TTCTTTTGAATATCCTTTCA+TGG | + | chr4.4:71599495-71599514 | None:intergenic | 25.0% |
| !!! | AACCAGAAAAATGTTTTTAC+AGG | - | chr4.4:71598663-71598682 | MS.gene060732:intron | 25.0% |
| !!! | AGTTTTTTCTGTTGATGATT+GGG | - | chr4.4:71598247-71598266 | MS.gene060732:CDS | 25.0% |
| !!! | GATCAATTATATGGTTTTGT+AGG | - | chr4.4:71599792-71599811 | MS.gene060732:CDS | 25.0% |
| !!! | GGATTATTTGATTTTTCTGT+TGG | - | chr4.4:71598684-71598703 | MS.gene060732:CDS | 25.0% |
| !!! | TTGTACAAAATTTTGGAAGT+AGG | - | chr4.4:71599719-71599738 | MS.gene060732:intron | 25.0% |
| AAAAAAAGTCTTCAACTCGA+GGG | - | chr4.4:71598361-71598380 | MS.gene060732:CDS | 30.0% | |
| AAAACAATGGACACTTATGT+TGG | + | chr4.4:71599699-71599718 | None:intergenic | 30.0% | |
| AATCATTATATGCACAGAAG+TGG | - | chr4.4:71599643-71599662 | MS.gene060732:intron | 30.0% | |
| ACCAATGTCTTAACATCATT+AGG | + | chr4.4:71598287-71598306 | None:intergenic | 30.0% | |
| AGATGAATTGGAAGAAAATG+AGG | - | chr4.4:71598893-71598912 | MS.gene060732:CDS | 30.0% | |
| ATCATTATATGCACAGAAGT+GGG | - | chr4.4:71599644-71599663 | MS.gene060732:intron | 30.0% | |
| ATTGGAGCTTAAAAAGCAAA+GGG | - | chr4.4:71599520-71599539 | MS.gene060732:CDS | 30.0% | |
| TAGACACCCATCATAAAATT+CGG | + | chr4.4:71598595-71598614 | None:intergenic | 30.0% | |
| TAGTACTTTCTCCAAAACTT+GGG | + | chr4.4:71599152-71599171 | None:intergenic | 30.0% | |
| TATTGGAGCTTAAAAAGCAA+AGG | - | chr4.4:71599519-71599538 | MS.gene060732:CDS | 30.0% | |
| TGCCTGCATAATTTAACAAA+AGG | + | chr4.4:71599264-71599283 | None:intergenic | 30.0% | |
| TTAGTACTTTCTCCAAAACT+TGG | + | chr4.4:71599153-71599172 | None:intergenic | 30.0% | |
| ! | GTCCTTTTGTTAAATTATGC+AGG | - | chr4.4:71599259-71599278 | MS.gene060732:intron | 30.0% |
| ! | TAGCAACCGAATTTTATGAT+GGG | - | chr4.4:71598586-71598605 | MS.gene060732:intron | 30.0% |
| ! | TTAGCAACCGAATTTTATGA+TGG | - | chr4.4:71598585-71598604 | MS.gene060732:intron | 30.0% |
| ! | TTTTGTATGATACACTTCCT+AGG | - | chr4.4:71599215-71599234 | MS.gene060732:intron | 30.0% |
| !! | AATAGTCAAGTGCATTGATT+TGG | - | chr4.4:71598728-71598747 | MS.gene060732:CDS | 30.0% |
| !! | TTTATGATGGGTGTCTAAAT+TGG | - | chr4.4:71598598-71598617 | MS.gene060732:intron | 30.0% |
| !!! | CAGTTTTTTCTGTTGATGAT+TGG | - | chr4.4:71598246-71598265 | MS.gene060732:CDS | 30.0% |
| AACATGGTAGTATCACAGAA+TGG | - | chr4.4:71599299-71599318 | MS.gene060732:CDS | 35.0% | |
| AATTGTTGACCACATGATTG+TGG | - | chr4.4:71598857-71598876 | MS.gene060732:intron | 35.0% | |
| CAAATGGAGTTCAAAAACCT+AGG | + | chr4.4:71599235-71599254 | None:intergenic | 35.0% | |
| CGTAGTGTGCAGAAATTATT+TGG | - | chr4.4:71598828-71598847 | MS.gene060732:intron | 35.0% | |
| GAAAAAAAGTCTTCAACTCG+AGG | - | chr4.4:71598360-71598379 | MS.gene060732:CDS | 35.0% | |
| GCAACTGGTAATAGTATTCT+TGG | - | chr4.4:71598338-71598357 | MS.gene060732:CDS | 35.0% | |
| GCCTAATGATGTTAAGACAT+TGG | - | chr4.4:71598283-71598302 | MS.gene060732:CDS | 35.0% | |
| TAACAAAAGGACTCAGCAAA+TGG | + | chr4.4:71599251-71599270 | None:intergenic | 35.0% | |
| TCATTATATGCACAGAAGTG+GGG | - | chr4.4:71599645-71599664 | MS.gene060732:intron | 35.0% | |
| TCTGTTGGAATTGAACTTCT+TGG | - | chr4.4:71598699-71598718 | MS.gene060732:CDS | 35.0% | |
| TTGGTTGTCAAATGAGTTTG+TGG | - | chr4.4:71598617-71598636 | MS.gene060732:intron | 35.0% | |
| ! | AAACGTGTTTTCCCAAGTTT+TGG | - | chr4.4:71599138-71599157 | MS.gene060732:intron | 35.0% |
| ! | TGATGTTAAGACATTGGTCT+TGG | - | chr4.4:71598289-71598308 | MS.gene060732:CDS | 35.0% |
| ACATGATTGTGGTCTTTACC+GGG | - | chr4.4:71598868-71598887 | MS.gene060732:intron | 40.0% | |
| ACTAAGAAGACATCTTGAGC+AGG | - | chr4.4:71599942-71599961 | MS.gene060732:CDS | 40.0% | |
| ATGGTAGTATCACAGAATGG+TGG | - | chr4.4:71599302-71599321 | MS.gene060732:CDS | 40.0% | |
| CACATGATTGTGGTCTTTAC+CGG | - | chr4.4:71598867-71598886 | MS.gene060732:intron | 40.0% | |
| CAGCGAAACGATGAATTCAT+TGG | + | chr4.4:71599426-71599445 | None:intergenic | 40.0% | |
| CTCAGTGAATCGTGTTCTTA+CGG | + | chr4.4:71598790-71598809 | None:intergenic | 40.0% | |
| GAGACACTGGACGATTATTT+AGG | - | chr4.4:71598915-71598934 | MS.gene060732:CDS | 40.0% | |
| GCTGCAAAAACAACAAAGAG+AGG | - | chr4.4:71599463-71599482 | MS.gene060732:CDS | 40.0% | |
| GTTAATGTTATCGATAGCCC+AGG | - | chr4.4:71598449-71598468 | MS.gene060732:intron | 40.0% | |
| TGACTGTCCAGAACCTTTAA+AGG | - | chr4.4:71598941-71598960 | MS.gene060732:CDS | 40.0% | |
| TGTCTTAACATCATTAGGCG+AGG | + | chr4.4:71598282-71598301 | None:intergenic | 40.0% | |
| ! | GTAGGTTGAGTCAAAGTTGA+GGG | - | chr4.4:71599810-71599829 | MS.gene060732:CDS | 40.0% |
| ! | TGTAGGTTGAGTCAAAGTTG+AGG | - | chr4.4:71599809-71599828 | MS.gene060732:CDS | 40.0% |
| !! | GCATTGTGAAGCTGTTTCTA+TGG | - | chr4.4:71599032-71599051 | MS.gene060732:intron | 40.0% |
| !! | GTTAAGACATTGGTCTTGGT+TGG | - | chr4.4:71598293-71598312 | MS.gene060732:CDS | 40.0% |
| !! | TTAAAGGTTCTGGACAGTCA+CGG | + | chr4.4:71598941-71598960 | None:intergenic | 40.0% |
| AAGAACACGATTCACTGAGG+AGG | - | chr4.4:71598791-71598810 | MS.gene060732:intron | 45.0% | |
| ACTTGTCTGCATTTCACACG+AGG | + | chr4.4:71598408-71598427 | None:intergenic | 45.0% | |
| AGTTGAGGGAAGCAACTACA+AGG | - | chr4.4:71599824-71599843 | MS.gene060732:CDS | 45.0% | |
| ATGATTGTGGTCTTTACCGG+GGG | - | chr4.4:71598870-71598889 | MS.gene060732:intron | 45.0% | |
| ATGGACACTTATGTTGGCCA+AGG | + | chr4.4:71599693-71599712 | None:intergenic | 45.0% | |
| CAGACAAGTGAGATGAACGA+TGG | - | chr4.4:71598419-71598438 | MS.gene060732:intron | 45.0% | |
| CATGATTGTGGTCTTTACCG+GGG | - | chr4.4:71598869-71598888 | MS.gene060732:intron | 45.0% | |
| CGGTAAAGACCACAATCATG+TGG | + | chr4.4:71598869-71598888 | None:intergenic | 45.0% | |
| CGTAAGAACACGATTCACTG+AGG | - | chr4.4:71598788-71598807 | MS.gene060732:intron | 45.0% | |
| GCTAAATAGGTCGCTAGCTA+AGG | + | chr4.4:71598570-71598589 | None:intergenic | 45.0% | |
| GGAAGAAAATGAGGAGACAC+TGG | - | chr4.4:71598902-71598921 | MS.gene060732:CDS | 45.0% | |
| TGGACACTTATGTTGGCCAA+GGG | + | chr4.4:71599692-71599711 | None:intergenic | 45.0% | |
| TGTCAGTAATTCGAGTCAGC+TGG | + | chr4.4:71599562-71599581 | None:intergenic | 45.0% | |
| TTCATCGTTTCGCTGCAGAA+AGG | - | chr4.4:71599431-71599450 | MS.gene060732:CDS | 45.0% | |
| TTCGCTGCAGAAAGGACAAA+TGG | - | chr4.4:71599439-71599458 | MS.gene060732:CDS | 45.0% | |
| TTCTTACGGAGAACACCACA+AGG | + | chr4.4:71598776-71598795 | None:intergenic | 45.0% | |
| TTCTTCCAATTCATCTCCCC+CGG | + | chr4.4:71598889-71598908 | None:intergenic | 45.0% | |
| ! | AGAGAGGCTGATTCCATGAA+AGG | - | chr4.4:71599479-71599498 | MS.gene060732:CDS | 45.0% |
| ! | GAGAATGGCACAACTAGTCT+CGG | + | chr4.4:71599995-71600014 | None:intergenic | 45.0% |
| !! | CAAGTGCATTGATTTGGCCA+AGG | - | chr4.4:71598734-71598753 | MS.gene060732:CDS | 45.0% |
| !! | GCTGACTCGAATTACTGACA+TGG | - | chr4.4:71599562-71599581 | MS.gene060732:intron | 45.0% |
| !! | TGCATTGATTTGGCCAAGGA+TGG | - | chr4.4:71598738-71598757 | MS.gene060732:CDS | 45.0% |
| ACACTTATGTTGGCCAAGGG+TGG | + | chr4.4:71599689-71599708 | None:intergenic | 50.0% | |
| ACTTATGTTGGCCAAGGGTG+GGG | + | chr4.4:71599687-71599706 | None:intergenic | 50.0% | |
| AGAACACCACAAGGACAGCA+TGG | + | chr4.4:71598767-71598786 | None:intergenic | 50.0% | |
| AGAGCAAGCTGCAAGACTAG+AGG | - | chr4.4:71599867-71599886 | MS.gene060732:CDS | 50.0% | |
| AGTTGCACTCTTGCCATTGC+CGG | + | chr4.4:71598324-71598343 | None:intergenic | 50.0% | |
| CACTTATGTTGGCCAAGGGT+GGG | + | chr4.4:71599688-71599707 | None:intergenic | 50.0% | |
| CTTTACCGGGGGAGATGAAT+TGG | - | chr4.4:71598881-71598900 | MS.gene060732:intron | 50.0% | |
| GACAGCATGGATTCCATCCT+TGG | + | chr4.4:71598754-71598773 | None:intergenic | 50.0% | |
| TACAAGGCTGGAGCTACGAT+TGG | - | chr4.4:71599840-71599859 | MS.gene060732:CDS | 50.0% | |
| TGGAATCCATGCTGTCCTTG+TGG | - | chr4.4:71598758-71598777 | MS.gene060732:CDS | 50.0% | |
| TGTCTGCATTTCACACGAGG+TGG | + | chr4.4:71598405-71598424 | None:intergenic | 50.0% | |
| !! | TTGGTCTTGGTTGGACGTAC+CGG | - | chr4.4:71598302-71598321 | MS.gene060732:CDS | 50.0% |
| CTTATGTTGGCCAAGGGTGG+GGG | + | chr4.4:71599686-71599705 | None:intergenic | 55.0% | |
| GAGGGAAGCAACTACAAGGC+TGG | - | chr4.4:71599828-71599847 | MS.gene060732:CDS | 55.0% | |
| GCACAGAAGTGGGGAGTTGT+GGG | - | chr4.4:71599654-71599673 | MS.gene060732:intron | 55.0% | |
| TAGTCTCGGCATCTCGCTTG+CGG | + | chr4.4:71599981-71600000 | None:intergenic | 55.0% | |
| TGCACAGAAGTGGGGAGTTG+TGG | - | chr4.4:71599653-71599672 | MS.gene060732:intron | 55.0% | |
| TTCACACGAGGTGGTGACAC+CGG | + | chr4.4:71598396-71598415 | None:intergenic | 55.0% | |
| ! | GGCAATGGCAAGAGTGCAAC+TGG | - | chr4.4:71598323-71598342 | MS.gene060732:CDS | 55.0% |
| ! | TTGGTTGGACGTACCGGCAA+TGG | - | chr4.4:71598308-71598327 | MS.gene060732:CDS | 55.0% |
| !! | AACTCGAGGGCTAGCTCTTC+CGG | - | chr4.4:71598374-71598393 | MS.gene060732:CDS | 55.0% |
| TGGGTTCGAACCCCCACCCT+TGG | - | chr4.4:71599673-71599692 | MS.gene060732:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 71598233 | 71600017 | 71598233 | ID=MS.gene060732 |
| chr4.4 | mRNA | 71598233 | 71600017 | 71598233 | ID=MS.gene060732.t1;Parent=MS.gene060732 |
| chr4.4 | exon | 71599780 | 71600017 | 71599780 | ID=MS.gene060732.t1.exon1;Parent=MS.gene060732.t1 |
| chr4.4 | CDS | 71599780 | 71600017 | 71599780 | ID=cds.MS.gene060732.t1;Parent=MS.gene060732.t1 |
| chr4.4 | exon | 71599288 | 71599565 | 71599288 | ID=MS.gene060732.t1.exon2;Parent=MS.gene060732.t1 |
| chr4.4 | CDS | 71599288 | 71599565 | 71599288 | ID=cds.MS.gene060732.t1;Parent=MS.gene060732.t1 |
| chr4.4 | exon | 71598889 | 71598969 | 71598889 | ID=MS.gene060732.t1.exon3;Parent=MS.gene060732.t1 |
| chr4.4 | CDS | 71598889 | 71598969 | 71598889 | ID=cds.MS.gene060732.t1;Parent=MS.gene060732.t1 |
| chr4.4 | exon | 71598667 | 71598801 | 71598667 | ID=MS.gene060732.t1.exon4;Parent=MS.gene060732.t1 |
| chr4.4 | CDS | 71598667 | 71598801 | 71598667 | ID=cds.MS.gene060732.t1;Parent=MS.gene060732.t1 |
| chr4.4 | exon | 71598233 | 71598436 | 71598233 | ID=MS.gene060732.t1.exon5;Parent=MS.gene060732.t1 |
| chr4.4 | CDS | 71598233 | 71598436 | 71598233 | ID=cds.MS.gene060732.t1;Parent=MS.gene060732.t1 |
| Gene Sequence |
| Protein sequence |
