Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060735.t1 | AES87697.1 | 85.2 | 365 | 9 | 1 | 1 | 320 | 1 | 365 | 2.70E-144 | 521.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060735.t1 | F4HT21 | 53.7 | 296 | 88 | 3 | 10 | 260 | 13 | 304 | 2.0e-76 | 287.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060735.t1 | G7JN60 | 85.2 | 365 | 9 | 1 | 1 | 320 | 1 | 365 | 1.9e-144 | 521.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene060735 | MS.gene63514 | PPI |
MS.gene51627 | MS.gene060735 | PPI |
MS.gene009458 | MS.gene060735 | PPI |
MS.gene060735 | MS.gene56256 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060735.t1 | MTR_4g032350 | 84.384 | 365 | 12 | 1 | 1 | 320 | 1 | 365 | 0.0 | 610 |
MS.gene060735.t1 | MTR_4g032300 | 71.976 | 339 | 46 | 2 | 1 | 293 | 1 | 336 | 2.62e-171 | 479 |
MS.gene060735.t1 | MTR_4g032220 | 65.559 | 331 | 63 | 2 | 10 | 289 | 9 | 339 | 5.64e-140 | 400 |
MS.gene060735.t1 | MTR_4g032240 | 58.859 | 333 | 84 | 2 | 10 | 289 | 9 | 341 | 4.05e-129 | 372 |
MS.gene060735.t1 | MTR_4g032330 | 79.365 | 63 | 13 | 0 | 231 | 293 | 17 | 79 | 1.92e-22 | 89.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060735.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
MS.gene060735.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
MS.gene060735.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
MS.gene060735.t1 | AT1G33970 | 53.106 | 322 | 102 | 3 | 10 | 286 | 13 | 330 | 1.82e-101 | 301 |
MS.gene060735.t1 | AT1G33970 | 62.281 | 228 | 81 | 3 | 10 | 236 | 13 | 236 | 4.65e-88 | 265 |
MS.gene060735.t1 | AT1G33950 | 48.540 | 274 | 129 | 3 | 21 | 293 | 13 | 275 | 2.05e-84 | 257 |
MS.gene060735.t1 | AT1G33900 | 50.000 | 254 | 122 | 3 | 19 | 271 | 14 | 263 | 1.13e-82 | 253 |
MS.gene060735.t1 | AT1G33930 | 46.182 | 275 | 127 | 2 | 10 | 284 | 24 | 277 | 5.97e-81 | 249 |
MS.gene060735.t1 | AT1G33960 | 44.923 | 325 | 158 | 8 | 13 | 320 | 33 | 353 | 7.72e-80 | 247 |
MS.gene060735.t1 | AT1G33960 | 44.923 | 325 | 158 | 8 | 13 | 320 | 57 | 377 | 1.53e-79 | 247 |
MS.gene060735.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 2.03e-78 | 243 |
MS.gene060735.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 5.21e-78 | 243 |
MS.gene060735.t1 | AT1G33950 | 46.715 | 274 | 128 | 4 | 21 | 293 | 13 | 269 | 1.48e-77 | 239 |
MS.gene060735.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 6.75e-77 | 243 |
MS.gene060735.t1 | AT2G26820 | 46.290 | 283 | 135 | 2 | 20 | 285 | 1 | 283 | 8.79e-77 | 243 |
MS.gene060735.t1 | AT1G33890 | 44.186 | 301 | 145 | 5 | 18 | 296 | 7 | 306 | 3.79e-72 | 226 |
MS.gene060735.t1 | AT1G33890 | 44.186 | 301 | 145 | 5 | 18 | 296 | 7 | 306 | 3.79e-72 | 226 |
MS.gene060735.t1 | AT4G09940 | 42.810 | 306 | 122 | 6 | 24 | 281 | 47 | 347 | 3.03e-70 | 223 |
MS.gene060735.t1 | AT4G09940 | 42.810 | 306 | 122 | 6 | 24 | 281 | 90 | 390 | 1.63e-69 | 223 |
MS.gene060735.t1 | AT1G33910 | 46.388 | 263 | 119 | 6 | 19 | 268 | 8 | 261 | 2.74e-69 | 218 |
MS.gene060735.t1 | AT1G33830 | 46.544 | 217 | 115 | 1 | 26 | 242 | 10 | 225 | 1.50e-66 | 208 |
MS.gene060735.t1 | AT4G09950 | 40.303 | 330 | 137 | 7 | 3 | 284 | 4 | 321 | 4.89e-65 | 208 |
MS.gene060735.t1 | AT4G09930 | 41.311 | 305 | 137 | 5 | 24 | 288 | 26 | 328 | 9.48e-64 | 205 |
MS.gene060735.t1 | AT1G33870 | 42.063 | 252 | 137 | 4 | 49 | 298 | 1 | 245 | 2.22e-62 | 199 |
MS.gene060735.t1 | AT1G33880 | 40.278 | 216 | 123 | 2 | 18 | 233 | 17 | 226 | 5.56e-57 | 184 |
MS.gene060735.t1 | AT1G33880 | 40.278 | 216 | 123 | 2 | 18 | 233 | 17 | 226 | 5.56e-57 | 184 |
MS.gene060735.t1 | AT4G09950 | 37.255 | 255 | 110 | 5 | 77 | 284 | 7 | 258 | 2.58e-38 | 137 |
Find 53 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGAGCGTGCAGAAATTATT+TGG | 0.207110 | 4.4:-71565263 | MS.gene060735:CDS |
CAGGTCTTGGTGCCGATAAT+TGG | 0.262974 | 4.4:-71565803 | MS.gene060735:CDS |
TTAAACAGCTCATCTGTATA+AGG | 0.296242 | 4.4:+71564723 | None:intergenic |
AATTGTCAAATGCATTGATT+TGG | 0.316668 | 4.4:-71565363 | MS.gene060735:CDS |
TACATGATTATCGTCTTTAC+CGG | 0.324469 | 4.4:-71565224 | MS.gene060735:CDS |
AGAATAGCACACCGATCTTC+TGG | 0.341306 | 4.4:+71563653 | None:intergenic |
GAAACACTGGACCAGTATTT+AGG | 0.362040 | 4.4:-71565176 | MS.gene060735:CDS |
GCAACCGGAAATAGTATTCT+TGG | 0.364280 | 4.4:-71565702 | MS.gene060735:CDS |
TACTTCACCTTTAGAGGCTC+TGG | 0.364446 | 4.4:+71565143 | None:intergenic |
GTCGACTGAGGCTAAGACTT+TGG | 0.404860 | 4.4:-71565757 | MS.gene060735:CDS |
AGAAGCAAACTCCCAATTAT+CGG | 0.404869 | 4.4:+71565791 | None:intergenic |
TACAAGGTTGGAGGAACAAT+TGG | 0.406298 | 4.4:-71563873 | MS.gene060735:CDS |
AGGTCTTGGTGCCGATAATT+GGG | 0.419484 | 4.4:-71565802 | MS.gene060735:CDS |
TTGCTTGGACGTACTGGGAA+TGG | 0.420013 | 4.4:-71565732 | MS.gene060735:CDS |
GACAATCGCGACCTAAATAC+TGG | 0.463624 | 4.4:+71565165 | None:intergenic |
TCGGTTGGAATTGAACTACT+TGG | 0.471172 | 4.4:-71565392 | MS.gene060735:CDS |
AAGAGAGAAGTTGTTGAACT+TGG | 0.473678 | 4.4:+71564781 | None:intergenic |
TGCTTGGACGTACTGGGAAT+GGG | 0.486276 | 4.4:-71565731 | MS.gene060735:CDS |
GTAGGTAGAGTCAAAGTTGA+GGG | 0.496709 | 4.4:-71563903 | MS.gene060735:intron |
CAAACAACTGAGCTTAATGA+TGG | 0.498734 | 4.4:-71565621 | MS.gene060735:CDS |
TGAGCTGTTTAAAGAACTAA+AGG | 0.504124 | 4.4:-71564712 | MS.gene060735:intron |
TTCTTCCAATTCATCTCCCC+CGG | 0.507786 | 4.4:+71565205 | None:intergenic |
TGCATTGATTTGGCAAAGGA+CGG | 0.508232 | 4.4:-71565353 | MS.gene060735:CDS |
AAGTCGAGGACTAGCTCTTC+CGG | 0.512151 | 4.4:-71565666 | MS.gene060735:CDS |
AGGCAATTCTTTCTCTGTGT+GGG | 0.516428 | 4.4:-71564857 | MS.gene060735:CDS |
GGGAATGGGAAGAGTGCAAC+CGG | 0.522574 | 4.4:-71565717 | MS.gene060735:CDS |
CAAATGCATTGATTTGGCAA+AGG | 0.532228 | 4.4:-71565357 | MS.gene060735:CDS |
AAGCACAAGGAGAACTTCGC+AGG | 0.539451 | 4.4:-71563682 | MS.gene060735:CDS |
AGGAAGAAGAGAGTGCTCTA+CGG | 0.540042 | 4.4:-71565283 | MS.gene060735:CDS |
AGTTGTTTGCATTTCGCATG+AGG | 0.544861 | 4.4:+71565635 | None:intergenic |
ACATGATTATCGTCTTTACC+GGG | 0.549360 | 4.4:-71565223 | MS.gene060735:CDS |
AGTTGAGGGCAGCAACTACA+AGG | 0.558512 | 4.4:-71563889 | MS.gene060735:CDS |
TTCGCATGAGGTGGTGACAC+CGG | 0.562942 | 4.4:+71565647 | None:intergenic |
CGATTGTCCAGAGCCTCTAA+AGG | 0.563031 | 4.4:-71565150 | MS.gene060735:intron |
GAGGGCAGCAACTACAAGGT+TGG | 0.566036 | 4.4:-71563885 | MS.gene060735:CDS |
CAGGCAATTCTTTCTCTGTG+TGG | 0.576595 | 4.4:-71564858 | MS.gene060735:CDS |
GGAAGAAAATAATGAAACAC+TGG | 0.577525 | 4.4:-71565189 | MS.gene060735:CDS |
AGTCTTAGCCTCAGTCGACA+TGG | 0.579628 | 4.4:+71565761 | None:intergenic |
ACTCAGAAGAAATCTTGAGC+AGG | 0.583310 | 4.4:-71563771 | MS.gene060735:CDS |
GTGAATGTTATCGACACTCC+AGG | 0.584952 | 4.4:-71565591 | MS.gene060735:intron |
TTGTTCTTCCATGTCGACTG+AGG | 0.597913 | 4.4:-71565769 | MS.gene060735:CDS |
GGCAGCAACTACAAGGTTGG+AGG | 0.599892 | 4.4:-71563882 | MS.gene060735:CDS |
GCAGGCGAGTGCCAGAAGAT+CGG | 0.608230 | 4.4:-71563664 | MS.gene060735:CDS |
TGTAGGTAGAGTCAAAGTTG+AGG | 0.615435 | 4.4:-71563904 | MS.gene060735:intron |
TGTTTGCATTTCGCATGAGG+TGG | 0.621167 | 4.4:+71565638 | None:intergenic |
AGAGCAAGCTGCAAGACTAG+AGG | 0.632155 | 4.4:-71563846 | MS.gene060735:CDS |
ATGATGTATCATGAGCTCGC+AGG | 0.646980 | 4.4:+71563732 | None:intergenic |
ATGATTATCGTCTTTACCGG+GGG | 0.649473 | 4.4:-71565221 | MS.gene060735:CDS |
TGTTAGAACACGCTTTACTG+AGG | 0.655556 | 4.4:-71565303 | MS.gene060735:CDS |
CATGATTATCGTCTTTACCG+GGG | 0.681075 | 4.4:-71565222 | MS.gene060735:CDS |
AACGTGGTAATATCACAGAA+TGG | 0.694251 | 4.4:-71564753 | MS.gene060735:CDS |
TAATATCACAGAATGGTGGA+CGG | 0.698141 | 4.4:-71564746 | MS.gene060735:CDS |
GTGGTAATATCACAGAATGG+TGG | 0.698978 | 4.4:-71564750 | MS.gene060735:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATTCTCTCAAAATTT+AGG | + | chr4.4:71565099-71565118 | None:intergenic | 15.0% |
!! | TAAATAATGTGAAAAAGATA+AGG | - | chr4.4:71564410-71564429 | MS.gene060735:intron | 15.0% |
!! | AAAATCAAATAATCCTGTAA+TGG | + | chr4.4:71564053-71564072 | None:intergenic | 20.0% |
!! | AAATAGTATTCTTGGAAAAA+AGG | - | chr4.4:71563771-71563790 | MS.gene060735:CDS | 20.0% |
!! | ATGTACAAAAGAAGATATAT+TGG | - | chr4.4:71564916-71564935 | MS.gene060735:intron | 20.0% |
!!! | CAATTGTTATATGATTTTGT+AGG | - | chr4.4:71565544-71565563 | MS.gene060735:intron | 20.0% |
!!! | TACAGGATTATTTGATTTTT+CGG | - | chr4.4:71564054-71564073 | MS.gene060735:intron | 20.0% |
! | AGTCTATATTAGATACACTA+TGG | - | chr4.4:71565008-71565027 | MS.gene060735:intron | 25.0% |
! | ATATCAATGAATTCATCGTT+TGG | - | chr4.4:71564834-71564853 | MS.gene060735:CDS | 25.0% |
! | ATTGTATCACTAACAGAAAA+AGG | + | chr4.4:71565307-71565326 | None:intergenic | 25.0% |
! | GTTGATGTTAATATTAATGC+AGG | - | chr4.4:71564588-71564607 | MS.gene060735:intron | 25.0% |
!! | GAAATGATGATGTATTCTTA+AGG | - | chr4.4:71565242-71565261 | MS.gene060735:CDS | 25.0% |
!! | GCATAATCTAAGAATGATTT+TGG | - | chr4.4:71565514-71565533 | MS.gene060735:intron | 25.0% |
!! | GTTTAAAGAACTAAAGGTAT+AGG | - | chr4.4:71564759-71564778 | MS.gene060735:CDS | 25.0% |
!! | TTTTCCAAGAATACTATTTC+CGG | + | chr4.4:71563770-71563789 | None:intergenic | 25.0% |
!!! | AAGTTTTGGTAGTTAAATAG+GGG | - | chr4.4:71565351-71565370 | MS.gene060735:CDS | 25.0% |
!!! | AATTGTCAAATGCATTGATT+TGG | - | chr4.4:71564102-71564121 | MS.gene060735:intron | 25.0% |
!!! | GAAGTTTTGGTAGTTAAATA+GGG | - | chr4.4:71565350-71565369 | MS.gene060735:CDS | 25.0% |
ATGGAACAAAACATGCTATA+AGG | + | chr4.4:71563913-71563932 | None:intergenic | 30.0% | |
GGAAGAAAATAATGAAACAC+TGG | - | chr4.4:71564276-71564295 | MS.gene060735:intron | 30.0% | |
TAAGGTAAAACATCTTTACC+TGG | + | chr4.4:71563895-71563914 | None:intergenic | 30.0% | |
TACATGATTATCGTCTTTAC+CGG | - | chr4.4:71564241-71564260 | MS.gene060735:intron | 30.0% | |
TGAGCTGTTTAAAGAACTAA+AGG | - | chr4.4:71564753-71564772 | MS.gene060735:CDS | 30.0% | |
TGTGTGTTTGCATTCTATTT+AGG | - | chr4.4:71565446-71565465 | MS.gene060735:intron | 30.0% | |
TTAAACAGCTCATCTGTATA+AGG | + | chr4.4:71564745-71564764 | None:intergenic | 30.0% | |
TTAAATAGGGGAAATTGTAG+CGG | - | chr4.4:71565363-71565382 | MS.gene060735:CDS | 30.0% | |
! | TCTTAATCGTATTGATCATG+CGG | - | chr4.4:71565492-71565511 | MS.gene060735:intron | 30.0% |
! | TTTTAGTACTTCACCTTTAG+AGG | + | chr4.4:71564331-71564350 | None:intergenic | 30.0% |
!! | ATTCAGAAAACTGACTTGTA+AGG | + | chr4.4:71565061-71565080 | None:intergenic | 30.0% |
!! | GCAATGGATTTTCAAAAACT+AGG | + | chr4.4:71564529-71564548 | None:intergenic | 30.0% |
!! | GGAAGTTTTGGTAGTTAAAT+AGG | - | chr4.4:71565349-71565368 | MS.gene060735:CDS | 30.0% |
!! | GGATTATTTGATTTTTCGGT+TGG | - | chr4.4:71564058-71564077 | MS.gene060735:intron | 30.0% |
AACGTGGTAATATCACAGAA+TGG | - | chr4.4:71564712-71564731 | MS.gene060735:intron | 35.0% | |
AAGAGAGAAGTTGTTGAACT+TGG | + | chr4.4:71564687-71564706 | None:intergenic | 35.0% | |
ACATGATTATCGTCTTTACC+GGG | - | chr4.4:71564242-71564261 | MS.gene060735:intron | 35.0% | |
AGAAGCAAACTCCCAATTAT+CGG | + | chr4.4:71563677-71563696 | None:intergenic | 35.0% | |
ATCCATTGCTGAATCTCTAA+TGG | - | chr4.4:71564540-71564559 | MS.gene060735:intron | 35.0% | |
ATGCAAACTAGCATGCAATT+AGG | + | chr4.4:71564479-71564498 | None:intergenic | 35.0% | |
CAAACAACTGAGCTTAATGA+TGG | - | chr4.4:71563844-71563863 | MS.gene060735:CDS | 35.0% | |
CAAACTTTGTGTACCATTAC+AGG | - | chr4.4:71564037-71564056 | MS.gene060735:intron | 35.0% | |
GTTCTCTTATATCCCAACTA+AGG | + | chr4.4:71565419-71565438 | None:intergenic | 35.0% | |
TAAATAGGGGAAATTGTAGC+GGG | - | chr4.4:71565364-71565383 | MS.gene060735:CDS | 35.0% | |
TGCAAACTAGCATGCAATTA+GGG | + | chr4.4:71564478-71564497 | None:intergenic | 35.0% | |
TTCCATTAGAGATTCAGCAA+TGG | + | chr4.4:71564545-71564564 | None:intergenic | 35.0% | |
! | AAAACTGAAGCATCCTTAGT+TGG | - | chr4.4:71565403-71565422 | MS.gene060735:CDS | 35.0% |
! | AAACTGAAGCATCCTTAGTT+GGG | - | chr4.4:71565404-71565423 | MS.gene060735:CDS | 35.0% |
! | GCTTTTCGATAACAAGACTA+AGG | - | chr4.4:71564642-71564661 | MS.gene060735:intron | 35.0% |
! | TAATATCACAGAATGGTGGA+CGG | - | chr4.4:71564719-71564738 | MS.gene060735:CDS | 35.0% |
! | TGTTCTAAACATGAACTCTG+TGG | - | chr4.4:71565469-71565488 | MS.gene060735:intron | 35.0% |
!! | CAAATGCATTGATTTGGCAA+AGG | - | chr4.4:71564108-71564127 | MS.gene060735:intron | 35.0% |
AAATAGGGGAAATTGTAGCG+GGG | - | chr4.4:71565365-71565384 | MS.gene060735:CDS | 40.0% | |
ACTCAGAAGAAATCTTGAGC+AGG | - | chr4.4:71565694-71565713 | MS.gene060735:CDS | 40.0% | |
AGGCAATTCTTTCTCTGTGT+GGG | - | chr4.4:71564608-71564627 | MS.gene060735:intron | 40.0% | |
AGTTGTTTGCATTTCGCATG+AGG | + | chr4.4:71563833-71563852 | None:intergenic | 40.0% | |
ATGATTATCGTCTTTACCGG+GGG | - | chr4.4:71564244-71564263 | MS.gene060735:intron | 40.0% | |
CAGAAAAAGGATGCACATCT+CGG | + | chr4.4:71565294-71565313 | None:intergenic | 40.0% | |
CATGATTATCGTCTTTACCG+GGG | - | chr4.4:71564243-71564262 | MS.gene060735:intron | 40.0% | |
CGAGATTTCTGATCAAGTCA+TGG | + | chr4.4:71563932-71563951 | None:intergenic | 40.0% | |
GAAAAAAGGTCTTCAAGTCG+AGG | - | chr4.4:71563785-71563804 | MS.gene060735:CDS | 40.0% | |
GAAACACTGGACCAGTATTT+AGG | - | chr4.4:71564289-71564308 | MS.gene060735:intron | 40.0% | |
GCAACCGGAAATAGTATTCT+TGG | - | chr4.4:71563763-71563782 | MS.gene060735:CDS | 40.0% | |
GCTGCAAAAACAACAAAGAG+AGG | - | chr4.4:71564877-71564896 | MS.gene060735:intron | 40.0% | |
GTAGGTAGAGTCAAAGTTGA+GGG | - | chr4.4:71565562-71565581 | MS.gene060735:intron | 40.0% | |
GTGGTAATATCACAGAATGG+TGG | - | chr4.4:71564715-71564734 | MS.gene060735:CDS | 40.0% | |
TAACTACCAAAACTTCCGAC+TGG | + | chr4.4:71565346-71565365 | None:intergenic | 40.0% | |
TACAAGGTTGGAGGAACAAT+TGG | - | chr4.4:71565592-71565611 | MS.gene060735:CDS | 40.0% | |
TCGGTTGGAATTGAACTACT+TGG | - | chr4.4:71564073-71564092 | MS.gene060735:intron | 40.0% | |
TGTAGGTAGAGTCAAAGTTG+AGG | - | chr4.4:71565561-71565580 | MS.gene060735:intron | 40.0% | |
TGTTAGAACACGCTTTACTG+AGG | - | chr4.4:71564162-71564181 | MS.gene060735:intron | 40.0% | |
TTGGCTTCAGAAACGAGAAA+TGG | - | chr4.4:71564853-71564872 | MS.gene060735:CDS | 40.0% | |
! | ACTTCTCTCTTTTGTGAACG+TGG | - | chr4.4:71564696-71564715 | MS.gene060735:intron | 40.0% |
! | AGACATTTTGAGCAAGCACA+AGG | - | chr4.4:71565770-71565789 | MS.gene060735:CDS | 40.0% |
! | TTAGTACCAGTCGGAAGTTT+TGG | - | chr4.4:71565337-71565356 | MS.gene060735:CDS | 40.0% |
!! | TGCATTGATTTGGCAAAGGA+CGG | - | chr4.4:71564112-71564131 | MS.gene060735:intron | 40.0% |
!!! | GCTAAGACTTTGGTTTTGCT+TGG | - | chr4.4:71563718-71563737 | MS.gene060735:CDS | 40.0% |
AGAATAGCACACCGATCTTC+TGG | + | chr4.4:71565815-71565834 | None:intergenic | 45.0% | |
AGAGAGGCTGATGCATTGAA+AGG | - | chr4.4:71564893-71564912 | MS.gene060735:intron | 45.0% | |
ATGATGTATCATGAGCTCGC+AGG | + | chr4.4:71565736-71565755 | None:intergenic | 45.0% | |
CAGGCAATTCTTTCTCTGTG+TGG | - | chr4.4:71564607-71564626 | MS.gene060735:intron | 45.0% | |
CATGTCGTCTTAGTACCAGT+CGG | - | chr4.4:71565328-71565347 | MS.gene060735:CDS | 45.0% | |
CGGAGCGTGCAGAAATTATT+TGG | - | chr4.4:71564202-71564221 | MS.gene060735:intron | 45.0% | |
GACAATCGCGACCTAAATAC+TGG | + | chr4.4:71564303-71564322 | None:intergenic | 45.0% | |
GCTGAATCGCATTACTGAGA+TGG | - | chr4.4:71564976-71564995 | MS.gene060735:intron | 45.0% | |
GTGAATGTTATCGACACTCC+AGG | - | chr4.4:71563874-71563893 | MS.gene060735:CDS | 45.0% | |
TCTCAGTAATGCGATTCAGC+TGG | + | chr4.4:71564976-71564995 | None:intergenic | 45.0% | |
TGTTTGCATTTCGCATGAGG+TGG | + | chr4.4:71563830-71563849 | None:intergenic | 45.0% | |
TTCTTCCAATTCATCTCCCC+CGG | + | chr4.4:71564263-71564282 | None:intergenic | 45.0% | |
! | TACTTCACCTTTAGAGGCTC+TGG | + | chr4.4:71564325-71564344 | None:intergenic | 45.0% |
! | TTGTTCTTCCATGTCGACTG+AGG | - | chr4.4:71563696-71563715 | MS.gene060735:CDS | 45.0% |
!! | AGGAAGAAGAGAGTGCTCTA+CGG | - | chr4.4:71564182-71564201 | MS.gene060735:intron | 45.0% |
!! | AGGTCTTGGTGCCGATAATT+GGG | - | chr4.4:71563663-71563682 | MS.gene060735:CDS | 45.0% |
!! | TGGTTTTGCTTGGACGTACT+GGG | - | chr4.4:71563728-71563747 | MS.gene060735:CDS | 45.0% |
!!! | TTGGTTTTGCTTGGACGTAC+TGG | - | chr4.4:71563727-71563746 | MS.gene060735:CDS | 45.0% |
AAGCACAAGGAGAACTTCGC+AGG | - | chr4.4:71565783-71565802 | MS.gene060735:CDS | 50.0% | |
AGAGCAAGCTGCAAGACTAG+AGG | - | chr4.4:71565619-71565638 | MS.gene060735:CDS | 50.0% | |
AGTCTTAGCCTCAGTCGACA+TGG | + | chr4.4:71563707-71563726 | None:intergenic | 50.0% | |
AGTTGAGGGCAGCAACTACA+AGG | - | chr4.4:71565576-71565595 | MS.gene060735:intron | 50.0% | |
ATGGGGGAAAGTTCAGGTCT+TGG | - | chr4.4:71563649-71563668 | MS.gene060735:CDS | 50.0% | |
CGATTGTCCAGAGCCTCTAA+AGG | - | chr4.4:71564315-71564334 | MS.gene060735:intron | 50.0% | |
CTTTACCGGGGGAGATGAAT+TGG | - | chr4.4:71564255-71564274 | MS.gene060735:intron | 50.0% | |
GTCGACTGAGGCTAAGACTT+TGG | - | chr4.4:71563708-71563727 | MS.gene060735:CDS | 50.0% | |
TGCTTGGACGTACTGGGAAT+GGG | - | chr4.4:71563734-71563753 | MS.gene060735:CDS | 50.0% | |
TTGCTTGGACGTACTGGGAA+TGG | - | chr4.4:71563733-71563752 | MS.gene060735:CDS | 50.0% | |
!! | AAGTCGAGGACTAGCTCTTC+CGG | - | chr4.4:71563799-71563818 | MS.gene060735:CDS | 50.0% |
!! | CAGGTCTTGGTGCCGATAAT+TGG | - | chr4.4:71563662-71563681 | MS.gene060735:CDS | 50.0% |
GAGGGCAGCAACTACAAGGT+TGG | - | chr4.4:71565580-71565599 | MS.gene060735:intron | 55.0% | |
GGCAGCAACTACAAGGTTGG+AGG | - | chr4.4:71565583-71565602 | MS.gene060735:intron | 55.0% | |
TTCGCATGAGGTGGTGACAC+CGG | + | chr4.4:71563821-71563840 | None:intergenic | 55.0% | |
! | GGGAAATTGTAGCGGGGCTT+AGG | - | chr4.4:71565371-71565390 | MS.gene060735:CDS | 55.0% |
! | GGGAATGGGAAGAGTGCAAC+CGG | - | chr4.4:71563748-71563767 | MS.gene060735:CDS | 55.0% |
GCAGGCGAGTGCCAGAAGAT+CGG | - | chr4.4:71565801-71565820 | MS.gene060735:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 71563649 | 71565838 | 71563649 | ID=MS.gene060735 |
chr4.4 | mRNA | 71563649 | 71565838 | 71563649 | ID=MS.gene060735.t1;Parent=MS.gene060735 |
chr4.4 | exon | 71565592 | 71565838 | 71565592 | ID=MS.gene060735.t1.exon1;Parent=MS.gene060735.t1 |
chr4.4 | CDS | 71565592 | 71565838 | 71565592 | ID=cds.MS.gene060735.t1;Parent=MS.gene060735.t1 |
chr4.4 | exon | 71565151 | 71565428 | 71565151 | ID=MS.gene060735.t1.exon2;Parent=MS.gene060735.t1 |
chr4.4 | CDS | 71565151 | 71565428 | 71565151 | ID=cds.MS.gene060735.t1;Parent=MS.gene060735.t1 |
chr4.4 | exon | 71564713 | 71564877 | 71564713 | ID=MS.gene060735.t1.exon3;Parent=MS.gene060735.t1 |
chr4.4 | CDS | 71564713 | 71564877 | 71564713 | ID=cds.MS.gene060735.t1;Parent=MS.gene060735.t1 |
chr4.4 | exon | 71563649 | 71563921 | 71563649 | ID=MS.gene060735.t1.exon4;Parent=MS.gene060735.t1 |
chr4.4 | CDS | 71563649 | 71563921 | 71563649 | ID=cds.MS.gene060735.t1;Parent=MS.gene060735.t1 |
Gene Sequence |
Protein sequence |