Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88260.t1 | ABD83946.1 | 92 | 263 | 21 | 0 | 1 | 263 | 31 | 293 | 2.20E-136 | 495 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88260.t1 | Q84KK6 | 79.4 | 267 | 51 | 2 | 1 | 263 | 31 | 297 | 2.7e-119 | 429.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88260.t1 | A0A072UTU1 | 92.0 | 263 | 21 | 0 | 1 | 263 | 31 | 293 | 1.6e-136 | 495.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052707 | MS.gene88260 | 0.807574 | 4.73E-50 | -1.69E-46 |
MS.gene052708 | MS.gene88260 | 0.818282 | 2.13E-52 | -1.69E-46 |
MS.gene055942 | MS.gene88260 | 0.834886 | 2.31E-56 | -1.69E-46 |
MS.gene060561 | MS.gene88260 | 0.831647 | 1.48E-55 | -1.69E-46 |
MS.gene060791 | MS.gene88260 | 0.840359 | 9.12E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88260.t1 | MTR_4g033200 | 92.015 | 263 | 21 | 0 | 1 | 263 | 31 | 293 | 0.0 | 501 |
MS.gene88260.t1 | MTR_4g033015 | 92.015 | 263 | 21 | 0 | 1 | 263 | 31 | 293 | 2.38e-180 | 500 |
MS.gene88260.t1 | MTR_4g033150 | 88.593 | 263 | 30 | 0 | 1 | 263 | 31 | 293 | 4.74e-174 | 484 |
MS.gene88260.t1 | MTR_0794s0020 | 89.041 | 219 | 24 | 0 | 1 | 219 | 31 | 249 | 2.26e-144 | 404 |
MS.gene88260.t1 | MTR_4g088200 | 74.905 | 263 | 64 | 1 | 1 | 263 | 31 | 291 | 6.19e-144 | 408 |
MS.gene88260.t1 | MTR_4g033170 | 74.609 | 256 | 59 | 1 | 1 | 256 | 31 | 280 | 5.88e-142 | 402 |
MS.gene88260.t1 | MTR_4g033085 | 74.409 | 254 | 59 | 1 | 1 | 254 | 31 | 278 | 2.84e-139 | 396 |
MS.gene88260.t1 | MTR_4g088190 | 76.894 | 264 | 60 | 1 | 1 | 263 | 31 | 294 | 2.06e-135 | 386 |
MS.gene88260.t1 | MTR_7g014570 | 51.331 | 263 | 118 | 3 | 1 | 263 | 31 | 283 | 2.62e-88 | 266 |
MS.gene88260.t1 | MTR_5g074600 | 49.242 | 264 | 127 | 4 | 1 | 263 | 31 | 288 | 9.23e-86 | 260 |
MS.gene88260.t1 | MTR_5g074680 | 49.621 | 264 | 126 | 4 | 1 | 263 | 32 | 289 | 1.32e-85 | 259 |
MS.gene88260.t1 | MTR_7g014510 | 48.669 | 263 | 130 | 3 | 1 | 263 | 31 | 288 | 2.31e-85 | 259 |
MS.gene88260.t1 | MTR_1g076940 | 48.120 | 266 | 131 | 5 | 1 | 263 | 31 | 292 | 1.95e-82 | 251 |
MS.gene88260.t1 | MTR_5g074580 | 47.727 | 264 | 131 | 4 | 1 | 263 | 32 | 289 | 1.89e-81 | 249 |
MS.gene88260.t1 | MTR_7g024500 | 46.388 | 263 | 129 | 4 | 1 | 263 | 30 | 280 | 9.14e-80 | 244 |
MS.gene88260.t1 | MTR_7g024520 | 48.289 | 263 | 124 | 4 | 1 | 263 | 30 | 280 | 3.67e-79 | 243 |
MS.gene88260.t1 | MTR_4g088345 | 50.379 | 264 | 122 | 4 | 1 | 263 | 31 | 286 | 8.67e-79 | 242 |
MS.gene88260.t1 | MTR_4g088340 | 49.242 | 264 | 125 | 4 | 1 | 263 | 8 | 263 | 1.13e-76 | 236 |
MS.gene88260.t1 | MTR_5g074610 | 47.148 | 263 | 106 | 3 | 1 | 263 | 27 | 256 | 1.21e-76 | 235 |
MS.gene88260.t1 | MTR_4g079160 | 45.455 | 264 | 135 | 3 | 1 | 263 | 30 | 285 | 1.28e-75 | 234 |
MS.gene88260.t1 | MTR_5g074540 | 44.318 | 264 | 122 | 5 | 1 | 263 | 31 | 270 | 1.90e-72 | 225 |
MS.gene88260.t1 | MTR_1g076930 | 44.726 | 237 | 120 | 6 | 1 | 233 | 8 | 237 | 2.24e-59 | 189 |
MS.gene88260.t1 | MTR_3g083620 | 37.931 | 261 | 151 | 6 | 2 | 261 | 39 | 289 | 3.06e-49 | 166 |
MS.gene88260.t1 | MTR_0079s0070 | 36.364 | 264 | 158 | 5 | 1 | 261 | 8 | 264 | 1.94e-45 | 155 |
MS.gene88260.t1 | MTR_4g038440 | 36.364 | 264 | 158 | 5 | 1 | 261 | 42 | 298 | 4.07e-45 | 155 |
MS.gene88260.t1 | MTR_0017s0100 | 35.985 | 264 | 159 | 5 | 1 | 261 | 42 | 298 | 2.55e-44 | 153 |
MS.gene88260.t1 | MTR_7g012090 | 32.090 | 268 | 168 | 6 | 2 | 259 | 40 | 303 | 8.38e-39 | 139 |
MS.gene88260.t1 | MTR_7g011990 | 32.463 | 268 | 159 | 7 | 2 | 259 | 40 | 295 | 3.57e-38 | 137 |
MS.gene88260.t1 | MTR_7g011900 | 33.080 | 263 | 167 | 6 | 2 | 259 | 40 | 298 | 4.53e-38 | 137 |
MS.gene88260.t1 | MTR_7g012070 | 31.716 | 268 | 169 | 7 | 2 | 259 | 40 | 303 | 1.51e-37 | 136 |
MS.gene88260.t1 | MTR_7g012020 | 32.319 | 263 | 169 | 6 | 2 | 259 | 39 | 297 | 1.61e-37 | 135 |
MS.gene88260.t1 | MTR_5g098170 | 35.955 | 267 | 155 | 10 | 1 | 259 | 33 | 291 | 2.30e-37 | 135 |
MS.gene88260.t1 | MTR_7g012040 | 32.443 | 262 | 169 | 6 | 2 | 259 | 39 | 296 | 3.47e-37 | 135 |
MS.gene88260.t1 | MTR_1g036460 | 32.576 | 264 | 167 | 6 | 3 | 259 | 38 | 297 | 4.58e-36 | 132 |
MS.gene88260.t1 | MTR_8g068870 | 33.585 | 265 | 165 | 7 | 1 | 259 | 32 | 291 | 1.95e-35 | 130 |
MS.gene88260.t1 | MTR_1g096310 | 32.453 | 265 | 168 | 6 | 2 | 259 | 40 | 300 | 2.58e-35 | 130 |
MS.gene88260.t1 | MTR_0591s0010 | 34.091 | 264 | 165 | 6 | 1 | 259 | 46 | 305 | 4.05e-35 | 129 |
MS.gene88260.t1 | MTR_7g118320 | 33.585 | 265 | 165 | 8 | 1 | 259 | 31 | 290 | 4.41e-35 | 129 |
MS.gene88260.t1 | MTR_3g092900 | 33.840 | 263 | 165 | 6 | 1 | 259 | 34 | 291 | 1.24e-34 | 128 |
MS.gene88260.t1 | MTR_2g055940 | 32.319 | 263 | 168 | 7 | 2 | 259 | 34 | 291 | 1.43e-34 | 127 |
MS.gene88260.t1 | MTR_8g068690 | 32.955 | 264 | 168 | 6 | 1 | 259 | 45 | 304 | 7.64e-34 | 126 |
MS.gene88260.t1 | MTR_1g036490 | 32.197 | 264 | 168 | 6 | 3 | 259 | 38 | 297 | 2.01e-33 | 125 |
MS.gene88260.t1 | MTR_8g068750 | 32.576 | 264 | 169 | 6 | 1 | 259 | 46 | 305 | 3.68e-33 | 124 |
MS.gene88260.t1 | MTR_7g118300 | 32.959 | 267 | 161 | 6 | 1 | 259 | 47 | 303 | 5.23e-33 | 124 |
MS.gene88260.t1 | MTR_4g038440 | 33.617 | 235 | 146 | 5 | 2 | 233 | 43 | 270 | 1.99e-31 | 117 |
MS.gene88260.t1 | MTR_2g072790 | 33.333 | 264 | 162 | 6 | 1 | 259 | 27 | 281 | 6.15e-31 | 118 |
MS.gene88260.t1 | MTR_8g068570 | 32.075 | 265 | 142 | 9 | 1 | 259 | 46 | 278 | 2.33e-30 | 115 |
MS.gene88260.t1 | MTR_8g024160 | 35.751 | 193 | 119 | 3 | 68 | 259 | 68 | 256 | 3.61e-30 | 115 |
MS.gene88260.t1 | MTR_1g036510 | 31.780 | 236 | 155 | 5 | 26 | 259 | 80 | 311 | 7.39e-30 | 115 |
MS.gene88260.t1 | MTR_3g021440 | 32.443 | 262 | 169 | 6 | 2 | 259 | 42 | 299 | 2.51e-29 | 114 |
MS.gene88260.t1 | MTR_7g012020 | 31.120 | 241 | 157 | 6 | 2 | 237 | 39 | 275 | 5.28e-29 | 111 |
MS.gene88260.t1 | MTR_3g096050 | 31.818 | 264 | 165 | 8 | 2 | 259 | 31 | 285 | 1.80e-27 | 108 |
MS.gene88260.t1 | MTR_3g021430 | 30.534 | 262 | 174 | 6 | 2 | 259 | 29 | 286 | 2.39e-27 | 108 |
MS.gene88260.t1 | MTR_6g078850 | 28.195 | 266 | 180 | 6 | 1 | 259 | 50 | 311 | 2.94e-25 | 104 |
MS.gene88260.t1 | MTR_3g096070 | 30.153 | 262 | 149 | 7 | 2 | 259 | 31 | 262 | 1.33e-24 | 100 |
MS.gene88260.t1 | MTR_8g068730 | 30.189 | 265 | 142 | 7 | 1 | 259 | 46 | 273 | 3.45e-24 | 99.8 |
MS.gene88260.t1 | MTR_8g068690 | 29.461 | 241 | 161 | 6 | 1 | 236 | 45 | 281 | 1.02e-21 | 92.0 |
MS.gene88260.t1 | MTR_1g036510 | 30.952 | 210 | 139 | 5 | 26 | 233 | 80 | 285 | 1.22e-21 | 92.0 |
MS.gene88260.t1 | MTR_3g096050 | 31.092 | 238 | 149 | 8 | 2 | 233 | 31 | 259 | 1.02e-20 | 89.0 |
MS.gene88260.t1 | MTR_8g068740 | 28.889 | 270 | 147 | 8 | 1 | 262 | 46 | 278 | 1.47e-20 | 88.6 |
MS.gene88260.t1 | MTR_7g012020 | 30.952 | 210 | 136 | 6 | 2 | 206 | 39 | 244 | 3.31e-20 | 87.4 |
MS.gene88260.t1 | MTR_8g068600 | 28.755 | 233 | 155 | 8 | 8 | 234 | 27 | 254 | 3.85e-18 | 82.0 |
MS.gene88260.t1 | MTR_8g068620 | 37.391 | 115 | 68 | 3 | 123 | 236 | 2 | 113 | 1.03e-16 | 74.3 |
MS.gene88260.t1 | MTR_1g036510 | 28.962 | 183 | 124 | 5 | 26 | 206 | 80 | 258 | 1.93e-13 | 68.9 |
MS.gene88260.t1 | MTR_1g050220 | 38.043 | 92 | 47 | 1 | 168 | 259 | 151 | 232 | 3.97e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88260.t1 | AT5G54160 | 34.483 | 261 | 164 | 5 | 1 | 259 | 34 | 289 | 4.90e-39 | 139 |
MS.gene88260.t1 | AT1G77520 | 33.818 | 275 | 156 | 7 | 1 | 259 | 44 | 308 | 7.65e-37 | 134 |
MS.gene88260.t1 | AT4G35150 | 32.296 | 257 | 124 | 7 | 2 | 255 | 31 | 240 | 4.73e-34 | 125 |
MS.gene88260.t1 | AT4G35160 | 34.470 | 264 | 152 | 8 | 2 | 255 | 45 | 297 | 1.55e-33 | 125 |
MS.gene88260.t1 | AT3G53140 | 33.086 | 269 | 161 | 8 | 1 | 259 | 27 | 286 | 1.29e-32 | 122 |
MS.gene88260.t1 | AT1G51990 | 30.682 | 264 | 170 | 6 | 3 | 259 | 32 | 289 | 1.93e-32 | 122 |
MS.gene88260.t1 | AT1G51990 | 30.712 | 267 | 166 | 7 | 3 | 259 | 32 | 289 | 1.01e-30 | 117 |
MS.gene88260.t1 | AT1G77530 | 33.457 | 269 | 165 | 6 | 1 | 259 | 44 | 308 | 4.89e-29 | 113 |
MS.gene88260.t1 | AT5G53810 | 31.111 | 270 | 171 | 6 | 1 | 259 | 40 | 305 | 8.48e-29 | 112 |
MS.gene88260.t1 | AT1G33030 | 31.343 | 268 | 165 | 10 | 1 | 259 | 21 | 278 | 3.08e-28 | 110 |
MS.gene88260.t1 | AT1G63140 | 31.852 | 270 | 168 | 7 | 1 | 259 | 44 | 308 | 2.67e-27 | 108 |
MS.gene88260.t1 | AT1G63140 | 31.852 | 270 | 168 | 7 | 1 | 259 | 64 | 328 | 3.38e-27 | 108 |
MS.gene88260.t1 | AT1G62900 | 41.026 | 117 | 69 | 0 | 143 | 259 | 16 | 132 | 1.21e-19 | 84.7 |
MS.gene88260.t1 | AT1G76790 | 28.417 | 278 | 165 | 9 | 1 | 259 | 30 | 292 | 3.90e-18 | 83.2 |
MS.gene88260.t1 | AT5G37170 | 35.294 | 119 | 76 | 1 | 142 | 259 | 43 | 161 | 4.83e-18 | 80.9 |
MS.gene88260.t1 | AT1G33030 | 30.165 | 242 | 150 | 10 | 1 | 233 | 21 | 252 | 6.12e-18 | 81.3 |
MS.gene88260.t1 | AT1G33030 | 30.165 | 242 | 150 | 10 | 1 | 233 | 21 | 252 | 7.49e-18 | 81.3 |
MS.gene88260.t1 | AT5G37170 | 35.294 | 119 | 76 | 1 | 142 | 259 | 143 | 261 | 7.99e-18 | 82.0 |
MS.gene88260.t1 | AT1G21130 | 27.636 | 275 | 169 | 9 | 1 | 259 | 40 | 300 | 4.32e-17 | 80.5 |
MS.gene88260.t1 | AT5G37170 | 40.000 | 100 | 56 | 2 | 164 | 259 | 14 | 113 | 6.36e-17 | 77.0 |
MS.gene88260.t1 | AT1G21100 | 27.106 | 273 | 173 | 8 | 1 | 259 | 40 | 300 | 1.69e-16 | 78.6 |
MS.gene88260.t1 | AT1G63140 | 29.098 | 244 | 157 | 7 | 1 | 233 | 64 | 302 | 3.63e-16 | 77.0 |
MS.gene88260.t1 | AT1G21120 | 26.374 | 273 | 175 | 8 | 1 | 259 | 40 | 300 | 7.88e-16 | 76.6 |
MS.gene88260.t1 | AT1G21110 | 26.007 | 273 | 176 | 8 | 1 | 259 | 40 | 300 | 9.11e-16 | 76.6 |
MS.gene88260.t1 | AT1G21120 | 28.625 | 269 | 174 | 7 | 1 | 259 | 88 | 348 | 1.56e-15 | 76.3 |
Find 49 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGCAAGAGGCGAGTCATTT+TGG | 0.211023 | 4.3:-67047259 | MS.gene88260:CDS |
CTCAGTGAGCCATTTCTTAG+AGG | 0.316815 | 4.3:+67047307 | None:intergenic |
TAGCCAAGTGTTTGAAGGTT+TGG | 0.322024 | 4.3:-67047138 | MS.gene88260:CDS |
TACAGTGGATTCTGCATGAT+TGG | 0.329305 | 4.3:-67046466 | MS.gene88260:intron |
TGAATTGTCCTTGAAGATAT+TGG | 0.335230 | 4.3:-67046438 | MS.gene88260:CDS |
TACAGGACACTAACTTTAGA+AGG | 0.365683 | 4.3:+67047521 | None:intergenic |
GCTAATTCAGTAAGAGTCAT+TGG | 0.368956 | 4.3:+67047563 | None:intergenic |
AACGAAAATTTGAAATTTGT+TGG | 0.401585 | 4.3:-67046996 | MS.gene88260:CDS |
TGTTTGTCACCATTTGTTAC+CGG | 0.405515 | 4.3:-67047365 | MS.gene88260:CDS |
GCAGTTCTCCAATATCTTCA+AGG | 0.406503 | 4.3:+67046430 | None:intergenic |
GTTTGAAGGTTTGGAGTCTC+TGG | 0.414653 | 4.3:-67047129 | MS.gene88260:CDS |
TTAGGTGAGGAAAAGTTTCA+TGG | 0.421372 | 4.3:+67047066 | None:intergenic |
GAGTATAGCCAAGTGTTTGA+AGG | 0.431457 | 4.3:-67047143 | MS.gene88260:CDS |
CCACTGATGAGAAGCATTGA+AGG | 0.442792 | 4.3:+67047398 | None:intergenic |
TGTGGTACTCCTCTAAGAAA+TGG | 0.454917 | 4.3:-67047316 | MS.gene88260:CDS |
GTTGATGTTGGAGGTGGCAC+AGG | 0.461040 | 4.3:-67047107 | MS.gene88260:CDS |
ATTTCAGGAAAAGGGACAAA+AGG | 0.472680 | 4.3:-67046398 | MS.gene88260:CDS |
TTGGAGTCTCTGGTTGATGT+TGG | 0.495110 | 4.3:-67047119 | MS.gene88260:CDS |
GAAAATTTGAAATTTGTTGG+TGG | 0.495217 | 4.3:-67046993 | MS.gene88260:CDS |
GAGTCTCTGGTTGATGTTGG+AGG | 0.503583 | 4.3:-67047116 | MS.gene88260:CDS |
ACACTGATGAATGGCAAAGA+AGG | 0.516027 | 4.3:-67047452 | MS.gene88260:CDS |
GATGTTGGAGGTGGCACAGG+AGG | 0.520874 | 4.3:-67047104 | MS.gene88260:CDS |
CTCAAATCAGCCGTGGAGCT+AGG | 0.521896 | 4.3:-67047617 | MS.gene88260:CDS |
TGAAGCGATCCGGTAACAAA+TGG | 0.526003 | 4.3:+67047356 | None:intergenic |
CACGGCTGATTTGAGTGCCA+TGG | 0.545739 | 4.3:+67047625 | None:intergenic |
AGTCTCTTTGAGAGCGCAAG+AGG | 0.547483 | 4.3:-67047272 | MS.gene88260:CDS |
ACGACATGGATGAAGCGATC+CGG | 0.554100 | 4.3:+67047346 | None:intergenic |
TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4.3:+67046948 | None:intergenic |
GCAAGCGCAAGAGACGATAC+AGG | 0.558531 | 4.3:+67047504 | None:intergenic |
ATCTGCTATGCCTAGCTCCA+CGG | 0.571981 | 4.3:+67047607 | None:intergenic |
CCTTCAATGCTTCTCATCAG+TGG | 0.573536 | 4.3:-67047398 | MS.gene88260:CDS |
GATTTGAGAATCAGCTGCCA+TGG | 0.583476 | 4.3:+67047184 | None:intergenic |
TCTCTGGTTGATGTTGGAGG+TGG | 0.586831 | 4.3:-67047113 | MS.gene88260:CDS |
TACCACATGTTGAGACGACA+TGG | 0.595315 | 4.3:+67047332 | None:intergenic |
ATCCATGTCGTCTCAACATG+TGG | 0.596571 | 4.3:-67047334 | MS.gene88260:CDS |
GAGTATGTTTCAAGATGCCA+TGG | 0.599550 | 4.3:-67047201 | MS.gene88260:CDS |
CATAGTATTTGACCAACCAC+AGG | 0.602779 | 4.3:-67047039 | MS.gene88260:CDS |
ACTCCAAACCTTCAAACACT+TGG | 0.605410 | 4.3:+67047135 | None:intergenic |
TTGCGCTTGCTAACACACAA+TGG | 0.607728 | 4.3:-67047491 | MS.gene88260:CDS |
GGACACTAACTTTAGAAGGG+TGG | 0.621869 | 4.3:+67047525 | None:intergenic |
GAAATGGCTCACTGAGGACA+AGG | 0.624424 | 4.3:-67047300 | MS.gene88260:CDS |
AGTAAAACAGCATCTGCAGG+AGG | 0.624714 | 4.3:+67046951 | None:intergenic |
AGGAAAAGGGACAAAAGGAA+AGG | 0.628316 | 4.3:-67046393 | None:intergenic |
CATGGCACTCAAATCAGCCG+TGG | 0.637083 | 4.3:-67047624 | MS.gene88260:CDS |
GCAGATGCAATCCACAACCA+TGG | 0.642290 | 4.3:-67047590 | MS.gene88260:CDS |
ACAGGACACTAACTTTAGAA+GGG | 0.644029 | 4.3:+67047522 | None:intergenic |
CTGATGAGAAGCATTGAAGG+AGG | 0.666811 | 4.3:+67047401 | None:intergenic |
GTAAAACAGCATCTGCAGGA+GGG | 0.681270 | 4.3:+67046952 | None:intergenic |
CTCTAAGAAATGGCTCACTG+AGG | 0.732533 | 4.3:-67047306 | MS.gene88260:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAGTTAAAGATATATTTTTT+GGG | - | chr4.3:67047114-67047133 | MS.gene88260:CDS | 15.0% |
!!! | GATAAAATATTTTTTTACAG+TGG | - | chr4.3:67047536-67047555 | MS.gene88260:CDS | 15.0% |
!!! | TGAGTTAAAGATATATTTTT+TGG | - | chr4.3:67047113-67047132 | MS.gene88260:CDS | 15.0% |
!! | ACTTAAAAAAGTAATTGAAC+CGG | - | chr4.3:67047268-67047287 | MS.gene88260:CDS | 20.0% |
!! | CTAATTAATCTTTGCAATAA+AGG | - | chr4.3:67047442-67047461 | MS.gene88260:CDS | 20.0% |
!! | TGTTCATTATCTTATATCAA+CGG | + | chr4.3:67047353-67047372 | None:intergenic | 20.0% |
!!! | AACGAAAATTTGAAATTTGT+TGG | - | chr4.3:67047021-67047040 | MS.gene88260:CDS | 20.0% |
!!! | GAGTAATTTTCTTATGTTAT+TGG | - | chr4.3:67047389-67047408 | MS.gene88260:CDS | 20.0% |
! | TAATTAGTCATCAACTAAAC+TGG | + | chr4.3:67047429-67047448 | None:intergenic | 25.0% |
!! | AAAAAAGCTATTTCAGGAAA+AGG | - | chr4.3:67047610-67047629 | MS.gene88260:CDS | 25.0% |
!! | AAAAAGCTATTTCAGGAAAA+GGG | - | chr4.3:67047611-67047630 | MS.gene88260:CDS | 25.0% |
!!! | GAAAATTTGAAATTTGTTGG+TGG | - | chr4.3:67047024-67047043 | MS.gene88260:CDS | 25.0% |
TGAATTGTCCTTGAAGATAT+TGG | - | chr4.3:67047579-67047598 | MS.gene88260:CDS | 30.0% | |
! | AACTGCAAAAAAGCTATTTC+AGG | - | chr4.3:67047604-67047623 | MS.gene88260:CDS | 30.0% |
! | GGTCAAATACTATGCATTTT+AGG | + | chr4.3:67046972-67046991 | None:intergenic | 30.0% |
!! | AATACTATGCATTTTAGGTG+AGG | + | chr4.3:67046967-67046986 | None:intergenic | 30.0% |
ACCGGTCTTAAAATTGTCAA+CGG | - | chr4.3:67047286-67047305 | MS.gene88260:CDS | 35.0% | |
ATTTCAGGAAAAGGGACAAA+AGG | - | chr4.3:67047619-67047638 | MS.gene88260:CDS | 35.0% | |
CAGGTTGTAAAAAACTTGTC+TGG | - | chr4.3:67046997-67047016 | MS.gene88260:CDS | 35.0% | |
GCAAAAACAACACTGATGAA+TGG | - | chr4.3:67046556-67046575 | MS.gene88260:intron | 35.0% | |
GCTAATTCAGTAAGAGTCAT+TGG | + | chr4.3:67046457-67046476 | None:intergenic | 35.0% | |
TACAGGACACTAACTTTAGA+AGG | + | chr4.3:67046499-67046518 | None:intergenic | 35.0% | |
TTAGGTGAGGAAAAGTTTCA+TGG | + | chr4.3:67046954-67046973 | None:intergenic | 35.0% | |
! | ACAGGACACTAACTTTAGAA+GGG | + | chr4.3:67046498-67046517 | None:intergenic | 35.0% |
! | TGTTTGTCACCATTTGTTAC+CGG | - | chr4.3:67046652-67046671 | MS.gene88260:intron | 35.0% |
!!! | AGTTTTTTACAACCTGTGGT+TGG | + | chr4.3:67046993-67047012 | None:intergenic | 35.0% |
!!! | GACAAGTTTTTTACAACCTG+TGG | + | chr4.3:67046997-67047016 | None:intergenic | 35.0% |
!!! | TAAGAGTCATTGGTTTTCCA+TGG | + | chr4.3:67046447-67046466 | None:intergenic | 35.0% |
ACACTGATGAATGGCAAAGA+AGG | - | chr4.3:67046565-67046584 | MS.gene88260:intron | 40.0% | |
ACTCCAAACCTTCAAACACT+TGG | + | chr4.3:67046885-67046904 | None:intergenic | 40.0% | |
AGTTAACTGCCGCTGATATA+AGG | + | chr4.3:67047188-67047207 | None:intergenic | 40.0% | |
CATAGTATTTGACCAACCAC+AGG | - | chr4.3:67046978-67046997 | MS.gene88260:CDS | 40.0% | |
GAGTATAGCCAAGTGTTTGA+AGG | - | chr4.3:67046874-67046893 | MS.gene88260:intron | 40.0% | |
GAGTATGTTTCAAGATGCCA+TGG | - | chr4.3:67046816-67046835 | MS.gene88260:intron | 40.0% | |
GCAGTTCTCCAATATCTTCA+AGG | + | chr4.3:67047590-67047609 | None:intergenic | 40.0% | |
GTTAACTGCCGCTGATATAA+GGG | + | chr4.3:67047187-67047206 | None:intergenic | 40.0% | |
TAGCCAAGTGTTTGAAGGTT+TGG | - | chr4.3:67046879-67046898 | MS.gene88260:intron | 40.0% | |
TTGAGTAAAACAGCATCTGC+AGG | + | chr4.3:67047072-67047091 | None:intergenic | 40.0% | |
! | AGGGAACGAGCAATTTTACA+AGG | + | chr4.3:67047168-67047187 | None:intergenic | 40.0% |
! | GGGAACGAGCAATTTTACAA+GGG | + | chr4.3:67047167-67047186 | None:intergenic | 40.0% |
! | TACAGTGGATTCTGCATGAT+TGG | - | chr4.3:67047551-67047570 | MS.gene88260:CDS | 40.0% |
! | TGTGGTACTCCTCTAAGAAA+TGG | - | chr4.3:67046701-67046720 | MS.gene88260:intron | 40.0% |
!! | TTCGATCATAAAAGCGTCAG+TGG | + | chr4.3:67047241-67047260 | None:intergenic | 40.0% |
!!! | GCCGTTGACAATTTTAAGAC+CGG | + | chr4.3:67047290-67047309 | None:intergenic | 40.0% |
!!! | TCATTGGTTTTCCATGGTTG+TGG | + | chr4.3:67046441-67046460 | None:intergenic | 40.0% |
!!! | TGCAGATGCTGTTTTACTCA+AGG | - | chr4.3:67047071-67047090 | MS.gene88260:CDS | 40.0% |
AGTAAAACAGCATCTGCAGG+AGG | + | chr4.3:67047069-67047088 | None:intergenic | 45.0% | |
ATCCATGTCGTCTCAACATG+TGG | - | chr4.3:67046683-67046702 | MS.gene88260:intron | 45.0% | |
CCTTCAATGCTTCTCATCAG+TGG | - | chr4.3:67046619-67046638 | MS.gene88260:intron | 45.0% | |
CTCAGTGAGCCATTTCTTAG+AGG | + | chr4.3:67046713-67046732 | None:intergenic | 45.0% | |
GATTTGAGAATCAGCTGCCA+TGG | + | chr4.3:67046836-67046855 | None:intergenic | 45.0% | |
GTAAAACAGCATCTGCAGGA+GGG | + | chr4.3:67047068-67047087 | None:intergenic | 45.0% | |
TACCACATGTTGAGACGACA+TGG | + | chr4.3:67046688-67046707 | None:intergenic | 45.0% | |
TATCGCTGAAAAATGCCGAG+CGG | + | chr4.3:67047212-67047231 | None:intergenic | 45.0% | |
TGAAGCGATCCGGTAACAAA+TGG | + | chr4.3:67046664-67046683 | None:intergenic | 45.0% | |
TGCTCGTTCCCTTATATCAG+CGG | - | chr4.3:67047176-67047195 | MS.gene88260:CDS | 45.0% | |
! | CTCTAAGAAATGGCTCACTG+AGG | - | chr4.3:67046711-67046730 | MS.gene88260:intron | 45.0% |
! | GGACACTAACTTTAGAAGGG+TGG | + | chr4.3:67046495-67046514 | None:intergenic | 45.0% |
! | GTTTGAAGGTTTGGAGTCTC+TGG | - | chr4.3:67046888-67046907 | MS.gene88260:intron | 45.0% |
! | TTGCGCTTGCTAACACACAA+TGG | - | chr4.3:67046526-67046545 | MS.gene88260:intron | 45.0% |
! | TTGGAGTCTCTGGTTGATGT+TGG | - | chr4.3:67046898-67046917 | MS.gene88260:intron | 45.0% |
!! | CCACTGATGAGAAGCATTGA+AGG | + | chr4.3:67046622-67046641 | None:intergenic | 45.0% |
!! | CTGATGAGAAGCATTGAAGG+AGG | + | chr4.3:67046619-67046638 | None:intergenic | 45.0% |
ACGACATGGATGAAGCGATC+CGG | + | chr4.3:67046674-67046693 | None:intergenic | 50.0% | |
ATCTGCTATGCCTAGCTCCA+CGG | + | chr4.3:67046413-67046432 | None:intergenic | 50.0% | |
GAAATGGCTCACTGAGGACA+AGG | - | chr4.3:67046717-67046736 | MS.gene88260:intron | 50.0% | |
GCAGATGCAATCCACAACCA+TGG | - | chr4.3:67046427-67046446 | MS.gene88260:CDS | 50.0% | |
TGCCACTGAAAAATGCCGAG+CGG | - | chr4.3:67047317-67047336 | MS.gene88260:CDS | 50.0% | |
! | AGTCTCTTTGAGAGCGCAAG+AGG | - | chr4.3:67046745-67046764 | MS.gene88260:intron | 50.0% |
! | GAGTCTCTGGTTGATGTTGG+AGG | - | chr4.3:67046901-67046920 | MS.gene88260:intron | 50.0% |
! | TCTCTGGTTGATGTTGGAGG+TGG | - | chr4.3:67046904-67046923 | MS.gene88260:intron | 50.0% |
!! | CGCAAGAGGCGAGTCATTTT+GGG | - | chr4.3:67046759-67046778 | MS.gene88260:intron | 50.0% |
AACGGCAGTTAACTGCCGCT+CGG | + | chr4.3:67047335-67047354 | None:intergenic | 55.0% | |
AGCGGCAGTTAACTACCGCT+CGG | - | chr4.3:67047194-67047213 | MS.gene88260:CDS | 55.0% | |
CTCAAATCAGCCGTGGAGCT+AGG | - | chr4.3:67046400-67046419 | MS.gene88260:CDS | 55.0% | |
GCAAGCGCAAGAGACGATAC+AGG | + | chr4.3:67046516-67046535 | None:intergenic | 55.0% | |
GTTGATGTTGGAGGTGGCAC+AGG | - | chr4.3:67046910-67046929 | MS.gene88260:intron | 55.0% | |
! | GCGCAAGAGGCGAGTCATTT+TGG | - | chr4.3:67046758-67046777 | MS.gene88260:intron | 55.0% |
!! | TGCCGCTCGGCATTTTTCAG+TGG | + | chr4.3:67047322-67047341 | None:intergenic | 55.0% |
GATGTTGGAGGTGGCACAGG+AGG | - | chr4.3:67046913-67046932 | MS.gene88260:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 67046394 | 67047645 | 67046394 | ID=MS.gene88260 |
chr4.3 | mRNA | 67046394 | 67047645 | 67046394 | ID=MS.gene88260.t1;Parent=MS.gene88260 |
chr4.3 | exon | 67046947 | 67047645 | 67046947 | ID=MS.gene88260.t1.exon1;Parent=MS.gene88260.t1 |
chr4.3 | CDS | 67046947 | 67047645 | 67046947 | ID=cds.MS.gene88260.t1;Parent=MS.gene88260.t1 |
chr4.3 | exon | 67046394 | 67046483 | 67046394 | ID=MS.gene88260.t1.exon2;Parent=MS.gene88260.t1 |
chr4.3 | CDS | 67046394 | 67046483 | 67046394 | ID=cds.MS.gene88260.t1;Parent=MS.gene88260.t1 |
Gene Sequence |
Protein sequence |