Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060821.t1 | KEH31818.1 | 98.9 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 6.30E-96 | 360.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060821.t1 | Q9ZRD6 | 88.0 | 183 | 22 | 0 | 1 | 183 | 1 | 183 | 3.0e-86 | 319.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060821.t1 | A0A072URY4 | 98.9 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 4.5e-96 | 360.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050752 | MS.gene060821 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene060821 | 0.809781 | 1.60E-50 | -1.69E-46 |
| MS.gene060821 | MS.gene30352 | 0.80143 | 9.04E-49 | -1.69E-46 |
| MS.gene060821 | MS.gene56860 | 0.802801 | 4.72E-49 | -1.69E-46 |
| MS.gene060821 | MS.gene69820 | 0.801197 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060821.t1 | MTR_4g105490 | 96.335 | 191 | 7 | 0 | 1 | 191 | 1 | 191 | 5.64e-137 | 380 |
| MS.gene060821.t1 | MTR_4g105490 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 3.06e-136 | 379 |
| MS.gene060821.t1 | MTR_4g105490 | 94.536 | 183 | 1 | 1 | 1 | 183 | 1 | 174 | 1.62e-125 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060821.t1 | AT5G58060 | 87.978 | 183 | 22 | 0 | 1 | 183 | 1 | 183 | 1.54e-119 | 337 |
| MS.gene060821.t1 | AT5G58060 | 77.073 | 205 | 25 | 1 | 1 | 183 | 1 | 205 | 2.89e-110 | 314 |
| MS.gene060821.t1 | AT5G58180 | 75.676 | 185 | 41 | 2 | 1 | 183 | 1 | 183 | 2.01e-97 | 281 |
| MS.gene060821.t1 | AT5G58180 | 75.676 | 185 | 41 | 2 | 1 | 183 | 1 | 183 | 2.01e-97 | 281 |
| MS.gene060821.t1 | AT2G25340 | 24.800 | 125 | 92 | 1 | 60 | 182 | 45 | 169 | 7.89e-11 | 59.7 |
Find 37 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGTGCAGTGGGATTTA+TGG | 0.204222 | 8.2:-19509948 | MS.gene060821:CDS |
| CGTGAGAGCTTCATTCAAAT+AGG | 0.274319 | 8.2:+19508553 | None:intergenic |
| GATGAATATATTAAAAGTTT+TGG | 0.306961 | 8.2:-19508620 | MS.gene060821:CDS |
| GTGAGAGCTTCATTCAAATA+GGG | 0.385021 | 8.2:+19508554 | None:intergenic |
| TGAATCATGGAGAAGCATTC+AGG | 0.395335 | 8.2:-19508597 | MS.gene060821:CDS |
| AGCAACTTATCAGCCTCTGC+AGG | 0.407447 | 8.2:+19508344 | None:intergenic |
| AACAATGAACTCTTTAACGC+TGG | 0.424776 | 8.2:+19510470 | None:intergenic |
| TGAAGCTCTCACGAAATTCC+AGG | 0.438362 | 8.2:-19508543 | MS.gene060821:intron |
| AGAGAAAACGCACTACGAAC+TGG | 0.440582 | 8.2:+19509914 | None:intergenic |
| GTGCATGCTTACAACAGAAA+TGG | 0.441935 | 8.2:-19509971 | MS.gene060821:CDS |
| TTGTTTCGTCCAACTCCCTC+TGG | 0.449194 | 8.2:+19508315 | None:intergenic |
| CGTAGCTAATCGTACTCCTC+AGG | 0.449938 | 8.2:-19510433 | MS.gene060821:CDS |
| TCGTGCAAGCACACTATCAA+TGG | 0.491767 | 8.2:+19507232 | None:intergenic |
| TGATTTGAGTGCAGCATCGC+AGG | 0.499499 | 8.2:-19507174 | MS.gene060821:intron |
| AATGAAGATCACGGCTCTGT+TGG | 0.506379 | 8.2:-19510577 | MS.gene060821:CDS |
| CACCGGCGATGGTTCAGAAT+CGG | 0.512387 | 8.2:-19510544 | MS.gene060821:CDS |
| GCTTGCACGAGGAGAGAAGC+TGG | 0.527117 | 8.2:-19507219 | MS.gene060821:CDS |
| AGAAATGGACTTTGTGCAGT+GGG | 0.544952 | 8.2:-19509956 | MS.gene060821:CDS |
| CAGAAATGGACTTTGTGCAG+TGG | 0.556323 | 8.2:-19509957 | MS.gene060821:CDS |
| GCTGAAAATCCAGAGGGAGT+TGG | 0.565538 | 8.2:-19508324 | MS.gene060821:CDS |
| GTGCTAAAATCCACCGGCGA+TGG | 0.570937 | 8.2:-19510555 | MS.gene060821:CDS |
| GCTTCCGATGTGAGTCACTT+CGG | 0.581854 | 8.2:-19510507 | MS.gene060821:CDS |
| CACCGATTCTGAACCATCGC+CGG | 0.582685 | 8.2:+19510542 | None:intergenic |
| GCTTCATTCAAATAGGGCCA+TGG | 0.584327 | 8.2:+19508560 | None:intergenic |
| GTAGCTAATCGTACTCCTCA+GGG | 0.612475 | 8.2:-19510432 | MS.gene060821:CDS |
| CGATTCTGAACCATCGCCGG+TGG | 0.619269 | 8.2:+19510545 | None:intergenic |
| AAATCTCCAGGACCCTGCAG+AGG | 0.620458 | 8.2:-19508357 | MS.gene060821:intron |
| CTGAGGAGTACGATTAGCTA+CGG | 0.622967 | 8.2:+19510434 | None:intergenic |
| CGTCAATCTGTTCAGCACGA+AGG | 0.627219 | 8.2:-19510405 | MS.gene060821:intron |
| CTGTTGGTGCTAAAATCCAC+CGG | 0.630376 | 8.2:-19510561 | MS.gene060821:CDS |
| GCAACTTATCAGCCTCTGCA+GGG | 0.635798 | 8.2:+19508345 | None:intergenic |
| ATTGATAGTGTGCTTGCACG+AGG | 0.650465 | 8.2:-19507230 | MS.gene060821:CDS |
| ACAGATTGACGCTGACCCTG+AGG | 0.664459 | 8.2:+19510417 | None:intergenic |
| TAAGTTGCTGAAAATCCAGA+GGG | 0.671975 | 8.2:-19508330 | MS.gene060821:CDS |
| ATAAGTTGCTGAAAATCCAG+AGG | 0.687647 | 8.2:-19508331 | MS.gene060821:CDS |
| AGGCAGACAGTACTGAACCA+TGG | 0.712623 | 8.2:-19508577 | MS.gene060821:CDS |
| GTAACCGAAGTGACTCACAT+CGG | 0.736012 | 8.2:+19510503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTAGTAATTTAATTTA+TGG | - | chr8.2:19508385-19508404 | MS.gene060821:intron | 10.0% |
| !! | AACAGTTAAAATCTAAAAAT+TGG | + | chr8.2:19508539-19508558 | None:intergenic | 15.0% |
| !! | TAATAAACATTGTAATAGAA+AGG | - | chr8.2:19507438-19507457 | MS.gene060821:intron | 15.0% |
| !!! | AATTTTTAGATTTTAACTGT+TGG | - | chr8.2:19508538-19508557 | MS.gene060821:intron | 15.0% |
| !!! | ATCTTGATTTAGTAATTTTA+TGG | - | chr8.2:19509772-19509791 | MS.gene060821:intron | 15.0% |
| !!! | ATTTTTAGATTTTAACTGTT+GGG | - | chr8.2:19508539-19508558 | MS.gene060821:intron | 15.0% |
| !!! | GATGAATATATTAAAAGTTT+TGG | - | chr8.2:19509011-19509030 | MS.gene060821:intron | 15.0% |
| !!! | TACTAATAAGACATTATTTT+AGG | + | chr8.2:19508375-19508394 | None:intergenic | 15.0% |
| !! | AACCAATGATATATTACATA+CGG | + | chr8.2:19508745-19508764 | None:intergenic | 20.0% |
| !! | AATGAAATCATTGAAACAAT+TGG | - | chr8.2:19508636-19508655 | MS.gene060821:intron | 20.0% |
| !! | AATTGTTTCAATGATTTCAT+TGG | + | chr8.2:19508637-19508656 | None:intergenic | 20.0% |
| !! | AATTTAGAAAAATGAAGGTA+CGG | + | chr8.2:19510190-19510209 | None:intergenic | 20.0% |
| !! | CTTATTAATGTACATATACT+TGG | - | chr8.2:19509681-19509700 | MS.gene060821:intron | 20.0% |
| !! | TAAAAAGAAACACAAACATA+TGG | + | chr8.2:19509707-19509726 | None:intergenic | 20.0% |
| !! | TACTTAAGTTAACAATGATA+TGG | - | chr8.2:19509424-19509443 | MS.gene060821:intron | 20.0% |
| !! | TGACAAATTTAGAAAAATGA+AGG | + | chr8.2:19510195-19510214 | None:intergenic | 20.0% |
| !! | TGATTCGCATAAATTTAATT+CGG | + | chr8.2:19507313-19507332 | None:intergenic | 20.0% |
| !! | TGGATTAATCAAGTAAAAAT+GGG | + | chr8.2:19509849-19509868 | None:intergenic | 20.0% |
| !! | TGGTCATATTATACATAATT+TGG | - | chr8.2:19509747-19509766 | MS.gene060821:intron | 20.0% |
| !! | TGTTGAAATATTTAATGATG+TGG | + | chr8.2:19508177-19508196 | None:intergenic | 20.0% |
| !! | TTAATCCAACATATTCATAT+TGG | + | chr8.2:19508606-19508625 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTGTTTGAGATT+CGG | - | chr8.2:19509467-19509486 | MS.gene060821:intron | 20.0% |
| !!! | AGGATTATTGATTTGATATA+TGG | - | chr8.2:19507458-19507477 | MS.gene060821:intron | 20.0% |
| !!! | ATTTTTACTTGATTAATCCA+GGG | - | chr8.2:19509849-19509868 | MS.gene060821:intron | 20.0% |
| !!! | TATTTAATTGGTTTACTAGA+TGG | - | chr8.2:19508959-19508978 | MS.gene060821:intron | 20.0% |
| !!! | TCATTTTCTTATAATACTAC+TGG | + | chr8.2:19507507-19507526 | None:intergenic | 20.0% |
| !!! | TTTTTAGATTTTAACTGTTG+GGG | - | chr8.2:19508540-19508559 | MS.gene060821:intron | 20.0% |
| !!! | TTTTTTATTTGTAGAGTACA+AGG | - | chr8.2:19507638-19507657 | MS.gene060821:intron | 20.0% |
| ! | ACAAATCCATTCAAAATTGT+AGG | + | chr8.2:19508070-19508089 | None:intergenic | 25.0% |
| ! | CTCTACAAATAAAAAATGCA+AGG | + | chr8.2:19507634-19507653 | None:intergenic | 25.0% |
| ! | CTGGATTAATCAAGTAAAAA+TGG | + | chr8.2:19509850-19509869 | None:intergenic | 25.0% |
| ! | GATCATGTTATCAAAATTGA+AGG | + | chr8.2:19508792-19508811 | None:intergenic | 25.0% |
| ! | GTATGTAATATATCATTGGT+TGG | - | chr8.2:19508744-19508763 | MS.gene060821:intron | 25.0% |
| ! | TAATCAAGTAAAAATGGGTA+CGG | + | chr8.2:19509844-19509863 | None:intergenic | 25.0% |
| ! | TAGTACCAATATGAATATGT+TGG | - | chr8.2:19508598-19508617 | MS.gene060821:CDS | 25.0% |
| ! | TATTTGTCTTTATATGTCGA+AGG | - | chr8.2:19508837-19508856 | MS.gene060821:intron | 25.0% |
| ! | TGGAAATTGAAGGAATAATA+TGG | + | chr8.2:19507263-19507282 | None:intergenic | 25.0% |
| !! | ATTGAAACAATTGGTTAGTT+TGG | - | chr8.2:19508645-19508664 | MS.gene060821:intron | 25.0% |
| !! | ATTTAGAAAAATGAAGGTAC+GGG | + | chr8.2:19510189-19510208 | None:intergenic | 25.0% |
| !! | CATTTTTACTTGATTAATCC+AGG | - | chr8.2:19509848-19509867 | MS.gene060821:intron | 25.0% |
| !! | TTAGTAATTTTATGGTGCTT+GGG | - | chr8.2:19509780-19509799 | MS.gene060821:intron | 25.0% |
| !! | TTGAATGTAATTACCTGTTT+TGG | - | chr8.2:19507530-19507549 | MS.gene060821:intron | 25.0% |
| !! | TTTAGTAATTTTATGGTGCT+TGG | - | chr8.2:19509779-19509798 | MS.gene060821:intron | 25.0% |
| !! | TTTTATACAATTTATGTCCC+TGG | - | chr8.2:19508237-19508256 | MS.gene060821:intron | 25.0% |
| !!! | ATTTTAGGATCTCAAATCTT+CGG | + | chr8.2:19508360-19508379 | None:intergenic | 25.0% |
| !!! | TTAAAAGTTTTGGTGAATCA+TGG | - | chr8.2:19509021-19509040 | MS.gene060821:intron | 25.0% |
| AAATGCAACCTAAAGGTAAA+AGG | + | chr8.2:19507857-19507876 | None:intergenic | 30.0% | |
| AATAAAATATGATGTCCTGC+AGG | - | chr8.2:19508983-19509002 | MS.gene060821:intron | 30.0% | |
| AATGTACACATATGCATTCA+CGG | + | chr8.2:19510534-19510553 | None:intergenic | 30.0% | |
| ATGTACTGTGTACATATACT+TGG | - | chr8.2:19509727-19509746 | MS.gene060821:intron | 30.0% | |
| ATTTAGAAGACAAAAGATGC+AGG | + | chr8.2:19509403-19509422 | None:intergenic | 30.0% | |
| CGACATATAAAGACAAATAG+AGG | + | chr8.2:19508836-19508855 | None:intergenic | 30.0% | |
| CTTTAAATTCCCGTATGTTT+GGG | - | chr8.2:19508882-19508901 | MS.gene060821:intron | 30.0% | |
| GACAATAATCCATGACTAAA+TGG | + | chr8.2:19508439-19508458 | None:intergenic | 30.0% | |
| GATTTGACAGGAACATAAAA+TGG | + | chr8.2:19509259-19509278 | None:intergenic | 30.0% | |
| GTCCGTATGTAATATATCAT+TGG | - | chr8.2:19508740-19508759 | MS.gene060821:intron | 30.0% | |
| GTCTTATAAATGCAACCTAA+AGG | + | chr8.2:19507864-19507883 | None:intergenic | 30.0% | |
| TAAATGCCTCTGCATTATAT+TGG | - | chr8.2:19509115-19509134 | MS.gene060821:intron | 30.0% | |
| TAGTGTTTGTCAACATATGA+TGG | - | chr8.2:19510352-19510371 | MS.gene060821:intron | 30.0% | |
| TCAATAACACTGTGCTAATT+GGG | + | chr8.2:19508690-19508709 | None:intergenic | 30.0% | |
| TGATATATTACATACGGACA+TGG | + | chr8.2:19508739-19508758 | None:intergenic | 30.0% | |
| TTTAGAAGACAAAAGATGCA+GGG | + | chr8.2:19509402-19509421 | None:intergenic | 30.0% | |
| ! | AAAGAGTTCATTGTTTTCGT+AGG | - | chr8.2:19507169-19507188 | MS.gene060821:intron | 30.0% |
| ! | AAGCATGAGTACTTCTAAAA+TGG | - | chr8.2:19509814-19509833 | MS.gene060821:intron | 30.0% |
| ! | AATATATCATTGGTTGGAGT+TGG | - | chr8.2:19508750-19508769 | MS.gene060821:intron | 30.0% |
| ! | ATGTTTTATAACTTCGCCTA+TGG | - | chr8.2:19510495-19510514 | MS.gene060821:CDS | 30.0% |
| ! | CCATTGTTGTTGTAAAAACA+TGG | + | chr8.2:19510118-19510137 | None:intergenic | 30.0% |
| ! | CTTTGTCCTACAATTTTGAA+TGG | - | chr8.2:19508061-19508080 | MS.gene060821:intron | 30.0% |
| ! | TCTGATGCATGCTATTTAAT+TGG | - | chr8.2:19508947-19508966 | MS.gene060821:intron | 30.0% |
| ! | TTAGGTTGCATTTATAAGAC+TGG | - | chr8.2:19507864-19507883 | MS.gene060821:intron | 30.0% |
| ! | TTAGTTTGGTAAGAATGACA+TGG | - | chr8.2:19508659-19508678 | MS.gene060821:intron | 30.0% |
| !! | CCATGTTTTTACAACAACAA+TGG | - | chr8.2:19510115-19510134 | MS.gene060821:intron | 30.0% |
| !!! | ACAAATGTCCTTTTTTCAAG+TGG | + | chr8.2:19507945-19507964 | None:intergenic | 30.0% |
| !!! | CTTTGTTTTCCATTTAGTCA+TGG | - | chr8.2:19508427-19508446 | MS.gene060821:intron | 30.0% |
| AAACATGAAATGCCTCTAAC+TGG | + | chr8.2:19508093-19508112 | None:intergenic | 35.0% | |
| AAATACTCCGTAGTGAGATA+TGG | - | chr8.2:19508196-19508215 | MS.gene060821:intron | 35.0% | |
| AACAATGAACTCTTTAACGC+TGG | + | chr8.2:19507164-19507183 | None:intergenic | 35.0% | |
| AATAGAGGAAAGCAGATGTT+CGG | + | chr8.2:19508821-19508840 | None:intergenic | 35.0% | |
| ATAAGTTGCTGAAAATCCAG+AGG | - | chr8.2:19509300-19509319 | MS.gene060821:intron | 35.0% | |
| ATCTCAGGGTTTCGAATTAT+TGG | - | chr8.2:19507284-19507303 | MS.gene060821:intron | 35.0% | |
| ATGCATGCTAAACACTTACA+AGG | + | chr8.2:19509349-19509368 | None:intergenic | 35.0% | |
| ATTCTCTCTCTTGCTTATGA+TGG | - | chr8.2:19509947-19509966 | MS.gene060821:CDS | 35.0% | |
| CAACTGAATGATTGCTAATC+AGG | + | chr8.2:19509642-19509661 | None:intergenic | 35.0% | |
| CCTTCAATTTCCATATCTCA+GGG | - | chr8.2:19507270-19507289 | MS.gene060821:intron | 35.0% | |
| CTAAAGCCAATATAATGCAG+AGG | + | chr8.2:19509124-19509143 | None:intergenic | 35.0% | |
| GAATGCATATGTGTACATTC+AGG | - | chr8.2:19510535-19510554 | MS.gene060821:CDS | 35.0% | |
| GTCAATAACACTGTGCTAAT+TGG | + | chr8.2:19508691-19508710 | None:intergenic | 35.0% | |
| GTGAAAAGTCATCATGTGAA+AGG | + | chr8.2:19509227-19509246 | None:intergenic | 35.0% | |
| GTGAGAGCTTCATTCAAATA+GGG | + | chr8.2:19509080-19509099 | None:intergenic | 35.0% | |
| TAAGTTGCTGAAAATCCAGA+GGG | - | chr8.2:19509301-19509320 | MS.gene060821:intron | 35.0% | |
| TAATTCGAAACCCTGAGATA+TGG | + | chr8.2:19507283-19507302 | None:intergenic | 35.0% | |
| TAGATGCCAGTTATATCAGA+TGG | - | chr8.2:19508918-19508937 | MS.gene060821:intron | 35.0% | |
| TATATTACATACGGACATGG+TGG | + | chr8.2:19508736-19508755 | None:intergenic | 35.0% | |
| TCCAAAAATCATGTTGGACT+TGG | + | chr8.2:19508335-19508354 | None:intergenic | 35.0% | |
| TCCTTCAATTTCCATATCTC+AGG | - | chr8.2:19507269-19507288 | MS.gene060821:intron | 35.0% | |
| TCGGTATCCAAAAATCATGT+TGG | + | chr8.2:19508341-19508360 | None:intergenic | 35.0% | |
| TGACAGGAACATAAAATGGA+GGG | + | chr8.2:19509255-19509274 | None:intergenic | 35.0% | |
| TGCATTCCATCTGATATAAC+TGG | + | chr8.2:19508927-19508946 | None:intergenic | 35.0% | |
| TTGACAGGAACATAAAATGG+AGG | + | chr8.2:19509256-19509275 | None:intergenic | 35.0% | |
| TTGTAAGTGTTTAGCATGCA+TGG | - | chr8.2:19509348-19509367 | MS.gene060821:intron | 35.0% | |
| TTTACTTGATTAATCCAGGG+TGG | - | chr8.2:19509852-19509871 | MS.gene060821:intron | 35.0% | |
| ! | AGAAAAGCCTTATGAAGCAT+AGG | + | chr8.2:19510244-19510263 | None:intergenic | 35.0% |
| ! | CTTGCTTATGATGGAAATAG+TGG | - | chr8.2:19509956-19509975 | MS.gene060821:CDS | 35.0% |
| ! | GCATGATGATGATAGAAGTA+TGG | - | chr8.2:19510010-19510029 | MS.gene060821:intron | 35.0% |
| ! | GCTTTAAATTCCCGTATGTT+TGG | - | chr8.2:19508881-19508900 | MS.gene060821:intron | 35.0% |
| ! | TATGATGGAAATAGTGGAAG+CGG | - | chr8.2:19509962-19509981 | MS.gene060821:CDS | 35.0% |
| ! | TCCAAGTCCAACATGATTTT+TGG | - | chr8.2:19508331-19508350 | MS.gene060821:CDS | 35.0% |
| !! | GTTAGAGGCATTTCATGTTT+AGG | - | chr8.2:19508093-19508112 | MS.gene060821:intron | 35.0% |
| !! | TTAGAAGTACTCATGCTTCA+GGG | + | chr8.2:19509812-19509831 | None:intergenic | 35.0% |
| !! | TTGTTTTGCGTTGATCTATC+TGG | - | chr8.2:19507346-19507365 | MS.gene060821:intron | 35.0% |
| !! | TTTAGAAGTACTCATGCTTC+AGG | + | chr8.2:19509813-19509832 | None:intergenic | 35.0% |
| !!! | CCTTTTTTCAAGTGGAACAT+GGG | + | chr8.2:19507937-19507956 | None:intergenic | 35.0% |
| !!! | GTAATTACCTGTTTTGGTGT+CGG | - | chr8.2:19507536-19507555 | MS.gene060821:intron | 35.0% |
| !!! | TCCTTTTTTCAAGTGGAACA+TGG | + | chr8.2:19507938-19507957 | None:intergenic | 35.0% |
| !!! | TGCTGTTTCCTTTTACCTTT+AGG | - | chr8.2:19507846-19507865 | MS.gene060821:intron | 35.0% |
| ACAAAGTACACCATGGTGAT+TGG | + | chr8.2:19508150-19508169 | None:intergenic | 40.0% | |
| ACATCAACACTTCTGATCGA+AGG | + | chr8.2:19507575-19507594 | None:intergenic | 40.0% | |
| ACCTGTACCTATGCTTCATA+AGG | - | chr8.2:19510234-19510253 | MS.gene060821:intron | 40.0% | |
| ACGAGGAAGTTAGACAAGAT+TGG | + | chr8.2:19508478-19508497 | None:intergenic | 40.0% | |
| ACTTTGTGCAGTGGGATTTA+TGG | - | chr8.2:19507683-19507702 | MS.gene060821:intron | 40.0% | |
| AGAGTGAGAGCAATGTGTAT+TGG | - | chr8.2:19507753-19507772 | MS.gene060821:intron | 40.0% | |
| ATATGCATTCACGGAATCAC+GGG | + | chr8.2:19510525-19510544 | None:intergenic | 40.0% | |
| CAAAACAAGCCAATAGAGTG+AGG | + | chr8.2:19510275-19510294 | None:intergenic | 40.0% | |
| CAACAAAAACGTACAAGCGA+TGG | - | chr8.2:19509884-19509903 | MS.gene060821:intron | 40.0% | |
| CACATCACGATGCTATGAAA+TGG | + | chr8.2:19509591-19509610 | None:intergenic | 40.0% | |
| CACTACATTTGTGTGTGATG+TGG | + | chr8.2:19510337-19510356 | None:intergenic | 40.0% | |
| CATATGCATTCACGGAATCA+CGG | + | chr8.2:19510526-19510545 | None:intergenic | 40.0% | |
| CCCATGTTCCACTTGAAAAA+AGG | - | chr8.2:19507934-19507953 | MS.gene060821:intron | 40.0% | |
| CCCTGAGATATGGAAATTGA+AGG | + | chr8.2:19507273-19507292 | None:intergenic | 40.0% | |
| CGAGGAAGTTAGACAAGATT+GGG | + | chr8.2:19508477-19508496 | None:intergenic | 40.0% | |
| CGTGAGAGCTTCATTCAAAT+AGG | + | chr8.2:19509081-19509100 | None:intergenic | 40.0% | |
| GTGCATGCTTACAACAGAAA+TGG | - | chr8.2:19507660-19507679 | MS.gene060821:intron | 40.0% | |
| TAAATTCCCGTATGTTTGGG+TGG | - | chr8.2:19508885-19508904 | MS.gene060821:intron | 40.0% | |
| TATGTTCCTGTCAAATCTCC+AGG | - | chr8.2:19509262-19509281 | MS.gene060821:intron | 40.0% | |
| TGGTACAACAAAGTACACCA+TGG | + | chr8.2:19508157-19508176 | None:intergenic | 40.0% | |
| TGTATTGCAACGCAGCATAT+GGG | - | chr8.2:19509374-19509393 | MS.gene060821:intron | 40.0% | |
| TTGTAGGACAAAGCAAGCAA+TGG | + | chr8.2:19508054-19508073 | None:intergenic | 40.0% | |
| TTGTATTGCAACGCAGCATA+TGG | - | chr8.2:19509373-19509392 | MS.gene060821:intron | 40.0% | |
| ! | AGAAATGGACTTTGTGCAGT+GGG | - | chr8.2:19507675-19507694 | MS.gene060821:intron | 40.0% |
| ! | ATACGGGAATTTAAAGCTGC+AGG | + | chr8.2:19508878-19508897 | None:intergenic | 40.0% |
| ! | GAATGGATTTGTCCAGTTAG+AGG | - | chr8.2:19508078-19508097 | MS.gene060821:intron | 40.0% |
| ! | GTTTGTTTGAGATTCGGCAT+TGG | - | chr8.2:19509473-19509492 | MS.gene060821:intron | 40.0% |
| ! | TAACTGTGCATTGACGCTTT+AGG | - | chr8.2:19508277-19508296 | MS.gene060821:intron | 40.0% |
| ! | TGCGTTTTCTCTTCTCAATC+AGG | - | chr8.2:19507728-19507747 | MS.gene060821:intron | 40.0% |
| ! | TTGCGTTGATCTATCTGGAT+CGG | - | chr8.2:19507351-19507370 | MS.gene060821:intron | 40.0% |
| !! | ATTGGTCATCGTTGATTCGA+CGG | + | chr8.2:19508521-19508540 | None:intergenic | 40.0% |
| !! | TAGAAGTACTCATGCTTCAG+GGG | + | chr8.2:19509811-19509830 | None:intergenic | 40.0% |
| !! | TGAATCATGGAGAAGCATTC+AGG | - | chr8.2:19509034-19509053 | MS.gene060821:intron | 40.0% |
| !! | TTCGATCAGAAGTGTTGATG+TGG | - | chr8.2:19507574-19507593 | MS.gene060821:intron | 40.0% |
| !!! | CTCACTCTATTGGCTTGTTT+TGG | - | chr8.2:19510273-19510292 | MS.gene060821:intron | 40.0% |
| !!! | GATTTTAACTGTTGGGGTCA+AGG | - | chr8.2:19508546-19508565 | MS.gene060821:CDS | 40.0% |
| AACAAGCCAATAGAGTGAGG+AGG | + | chr8.2:19510272-19510291 | None:intergenic | 45.0% | |
| AACTTATTCAAGCCGAGCAG+AGG | + | chr8.2:19508309-19508328 | None:intergenic | 45.0% | |
| AAGTGTCCTCAGCAATACCA+GGG | + | chr8.2:19508257-19508276 | None:intergenic | 45.0% | |
| ACAAGCCAATAGAGTGAGGA+GGG | + | chr8.2:19510271-19510290 | None:intergenic | 45.0% | |
| ACTTATTCAAGCCGAGCAGA+GGG | + | chr8.2:19508308-19508327 | None:intergenic | 45.0% | |
| AGAGAAAACGCACTACGAAC+TGG | + | chr8.2:19507720-19507739 | None:intergenic | 45.0% | |
| AGTTACCTTGCCAATCACCA+TGG | - | chr8.2:19508137-19508156 | MS.gene060821:intron | 45.0% | |
| CGTCTGACCATATCTCACTA+CGG | + | chr8.2:19508206-19508225 | None:intergenic | 45.0% | |
| GCCTTATGAAGCATAGGTAC+AGG | + | chr8.2:19510238-19510257 | None:intergenic | 45.0% | |
| GCTTCATTCAAATAGGGCCA+TGG | + | chr8.2:19509074-19509093 | None:intergenic | 45.0% | |
| GTAACCGAAGTGACTCACAT+CGG | + | chr8.2:19507131-19507150 | None:intergenic | 45.0% | |
| GTAGCTAATCGTACTCCTCA+GGG | - | chr8.2:19507199-19507218 | MS.gene060821:CDS | 45.0% | |
| TATATTCATCCAGCACCTGC+AGG | + | chr8.2:19509001-19509020 | None:intergenic | 45.0% | |
| TCATTCCCTCCTCACTCTAT+TGG | - | chr8.2:19510263-19510282 | MS.gene060821:intron | 45.0% | |
| TCGTGCAAGCACACTATCAA+TGG | + | chr8.2:19510402-19510421 | None:intergenic | 45.0% | |
| TGAAGCTCTCACGAAATTCC+AGG | - | chr8.2:19509088-19509107 | MS.gene060821:intron | 45.0% | |
| TGTTGTACTATCAACCACCC+TGG | + | chr8.2:19509869-19509888 | None:intergenic | 45.0% | |
| TTATCCGCCACCCAAACATA+CGG | + | chr8.2:19508895-19508914 | None:intergenic | 45.0% | |
| TTATGTCCCTGGTATTGCTG+AGG | - | chr8.2:19508248-19508267 | MS.gene060821:intron | 45.0% | |
| TTATGTTTCGAGCAACCTCG+TGG | - | chr8.2:19507806-19507825 | MS.gene060821:intron | 45.0% | |
| ! | AAAGTGTCCTCAGCAATACC+AGG | + | chr8.2:19508258-19508277 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr8.2:19508012-19508031 | None:intergenic | 45.0% |
| ! | ATGCTTGGGTTGCATGATAC+TGG | + | chr8.2:19509529-19509548 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr8.2:19508013-19508032 | None:intergenic | 45.0% |
| ! | CAGAAATGGACTTTGTGCAG+TGG | - | chr8.2:19507674-19507693 | MS.gene060821:intron | 45.0% |
| ! | CTGAGGAGTACGATTAGCTA+CGG | + | chr8.2:19507200-19507219 | None:intergenic | 45.0% |
| ! | TCTGCTCGGCTTGAATAAGT+TGG | - | chr8.2:19508308-19508327 | MS.gene060821:CDS | 45.0% |
| ! | TGCGTTGATCTATCTGGATC+GGG | - | chr8.2:19507352-19507371 | MS.gene060821:intron | 45.0% |
| ! | TGTGCATTGACGCTTTAGGT+TGG | - | chr8.2:19508281-19508300 | MS.gene060821:intron | 45.0% |
| !! | ATTGATAGTGTGCTTGCACG+AGG | - | chr8.2:19510401-19510420 | MS.gene060821:intron | 45.0% |
| !! | CTGTTGGTGCTAAAATCCAC+CGG | - | chr8.2:19507070-19507089 | MS.gene060821:CDS | 45.0% |
| !! | AATAAAAACAATAAAAAAAA+CGG | + | chr8.2:19507408-19507427 | None:intergenic | 5.0% |
| AAGTGGGGTCGGCTAAGTAA+CGG | + | chr8.2:19507997-19508016 | None:intergenic | 50.0% | |
| ACACCTAACAAGCTACCACG+AGG | + | chr8.2:19507824-19507843 | None:intergenic | 50.0% | |
| AGCAACTTATCAGCCTCTGC+AGG | + | chr8.2:19509290-19509309 | None:intergenic | 50.0% | |
| ATATGATGTCCTGCAGGTGC+TGG | - | chr8.2:19508989-19509008 | MS.gene060821:intron | 50.0% | |
| ATTCCCGTATGTTTGGGTGG+CGG | - | chr8.2:19508888-19508907 | MS.gene060821:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr8.2:19508011-19508030 | MS.gene060821:intron | 50.0% | |
| CCTCGTGAACATGCTCACAA+AGG | - | chr8.2:19508492-19508511 | MS.gene060821:intron | 50.0% | |
| CCTTTGTGAGCATGTTCACG+AGG | + | chr8.2:19508495-19508514 | None:intergenic | 50.0% | |
| CGTAGCTAATCGTACTCCTC+AGG | - | chr8.2:19507198-19507217 | MS.gene060821:CDS | 50.0% | |
| CGTCAATCTGTTCAGCACGA+AGG | - | chr8.2:19507226-19507245 | MS.gene060821:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr8.2:19508008-19508027 | None:intergenic | 50.0% | |
| CTTATTCAAGCCGAGCAGAG+GGG | + | chr8.2:19508307-19508326 | None:intergenic | 50.0% | |
| GCAACTTATCAGCCTCTGCA+GGG | + | chr8.2:19509289-19509308 | None:intergenic | 50.0% | |
| GCTGAAAATCCAGAGGGAGT+TGG | - | chr8.2:19509307-19509326 | MS.gene060821:intron | 50.0% | |
| GCTTCCGATGTGAGTCACTT+CGG | - | chr8.2:19507124-19507143 | MS.gene060821:intron | 50.0% | |
| GTACACCATGGTGATTGGCA+AGG | + | chr8.2:19508145-19508164 | None:intergenic | 50.0% | |
| TATCCGCCACCCAAACATAC+GGG | + | chr8.2:19508894-19508913 | None:intergenic | 50.0% | |
| TGATTTGAGTGCAGCATCGC+AGG | - | chr8.2:19510457-19510476 | MS.gene060821:CDS | 50.0% | |
| TTGTTTCGTCCAACTCCCTC+TGG | + | chr8.2:19509319-19509338 | None:intergenic | 50.0% | |
| TTTGCTCTGCAGCGATGCTT+GGG | + | chr8.2:19509543-19509562 | None:intergenic | 50.0% | |
| ! | AGGCAGACAGTACTGAACCA+TGG | - | chr8.2:19509054-19509073 | MS.gene060821:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr8.2:19508014-19508033 | None:intergenic | 50.0% |
| ! | CGGGAATTTAAAGCTGCAGG+CGG | + | chr8.2:19508875-19508894 | None:intergenic | 50.0% |
| ! | GATGGAAATAGTGGAAGCGG+TGG | - | chr8.2:19509965-19509984 | MS.gene060821:CDS | 50.0% |
| ! | TTTTGCTCTGCAGCGATGCT+TGG | + | chr8.2:19509544-19509563 | None:intergenic | 50.0% |
| !! | CAACCTCGTGGTAGCTTGTT+AGG | - | chr8.2:19507818-19507837 | MS.gene060821:intron | 50.0% |
| !! | TGATCGAAGGAGTGTCCATG+TGG | + | chr8.2:19507562-19507581 | None:intergenic | 50.0% |
| !! | TGCAGAGGCATTTACATGCC+TGG | + | chr8.2:19509109-19509128 | None:intergenic | 50.0% |
| AAATCTCCAGGACCCTGCAG+AGG | - | chr8.2:19509274-19509293 | MS.gene060821:intron | 55.0% | |
| ACAGATTGACGCTGACCCTG+AGG | + | chr8.2:19507217-19507236 | None:intergenic | 55.0% | |
| ACTTAGCCGACCCCACTTAG+TGG | - | chr8.2:19507999-19508018 | MS.gene060821:intron | 55.0% | |
| CACCGGCGATGGTTCAGAAT+CGG | - | chr8.2:19507087-19507106 | MS.gene060821:intron | 55.0% | |
| CAGGGTCCTGGAGATTTGAC+AGG | + | chr8.2:19509271-19509290 | None:intergenic | 55.0% | |
| CATGTGGCCGACACCAAAAC+AGG | + | chr8.2:19507546-19507565 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr8.2:19508006-19508025 | MS.gene060821:intron | 55.0% | |
| CGGAATCACGGGCAATCCAT+AGG | + | chr8.2:19510514-19510533 | None:intergenic | 55.0% | |
| CTTAGCCGACCCCACTTAGT+GGG | - | chr8.2:19508000-19508019 | MS.gene060821:intron | 55.0% | |
| GACATGGTGGCAAGACACAG+GGG | + | chr8.2:19508723-19508742 | None:intergenic | 55.0% | |
| GGACATGGTGGCAAGACACA+GGG | + | chr8.2:19508724-19508743 | None:intergenic | 55.0% | |
| GTGCTAAAATCCACCGGCGA+TGG | - | chr8.2:19507076-19507095 | MS.gene060821:CDS | 55.0% | |
| !! | CACCGATTCTGAACCATCGC+CGG | + | chr8.2:19507092-19507111 | None:intergenic | 55.0% |
| !! | TTTAGGTTGGCCCCTCTGCT+CGG | - | chr8.2:19508294-19508313 | MS.gene060821:intron | 55.0% |
| !!! | CTGTTTTGGTGTCGGCCACA+TGG | - | chr8.2:19507544-19507563 | MS.gene060821:intron | 55.0% |
| CGATTCTGAACCATCGCCGG+TGG | + | chr8.2:19507089-19507108 | None:intergenic | 60.0% | |
| CGGACATGGTGGCAAGACAC+AGG | + | chr8.2:19508725-19508744 | None:intergenic | 60.0% | |
| GCTTGCACGAGGAGAGAAGC+TGG | - | chr8.2:19510412-19510431 | MS.gene060821:CDS | 60.0% | |
| TATCAGCCTCTGCAGGGTCC+TGG | + | chr8.2:19509283-19509302 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 19507055 | 19510598 | 19507055 | ID=MS.gene060821 |
| chr8.2 | mRNA | 19507055 | 19510598 | 19507055 | ID=MS.gene060821.t1;Parent=MS.gene060821 |
| chr8.2 | exon | 19510406 | 19510598 | 19510406 | ID=MS.gene060821.t1.exon1;Parent=MS.gene060821.t1 |
| chr8.2 | CDS | 19510406 | 19510598 | 19510406 | ID=cds.MS.gene060821.t1;Parent=MS.gene060821.t1 |
| chr8.2 | exon | 19509904 | 19510001 | 19509904 | ID=MS.gene060821.t1.exon2;Parent=MS.gene060821.t1 |
| chr8.2 | CDS | 19509904 | 19510001 | 19509904 | ID=cds.MS.gene060821.t1;Parent=MS.gene060821.t1 |
| chr8.2 | exon | 19508544 | 19508648 | 19508544 | ID=MS.gene060821.t1.exon3;Parent=MS.gene060821.t1 |
| chr8.2 | CDS | 19508544 | 19508648 | 19508544 | ID=cds.MS.gene060821.t1;Parent=MS.gene060821.t1 |
| chr8.2 | exon | 19508304 | 19508369 | 19508304 | ID=MS.gene060821.t1.exon4;Parent=MS.gene060821.t1 |
| chr8.2 | CDS | 19508304 | 19508369 | 19508304 | ID=cds.MS.gene060821.t1;Parent=MS.gene060821.t1 |
| chr8.2 | exon | 19507175 | 19507261 | 19507175 | ID=MS.gene060821.t1.exon5;Parent=MS.gene060821.t1 |
| chr8.2 | CDS | 19507175 | 19507261 | 19507175 | ID=cds.MS.gene060821.t1;Parent=MS.gene060821.t1 |
| chr8.2 | exon | 19507055 | 19507096 | 19507055 | ID=MS.gene060821.t1.exon6;Parent=MS.gene060821.t1 |
| chr8.2 | CDS | 19507055 | 19507096 | 19507055 | ID=cds.MS.gene060821.t1;Parent=MS.gene060821.t1 |
| Gene Sequence |
| Protein sequence |
