Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69820.t1 | XP_003596650.1 | 100 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 7.50E-57 | 229.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69820.t1 | A6MZM2 | 89.6 | 115 | 11 | 1 | 1 | 114 | 1 | 115 | 1.2e-52 | 206.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69820.t1 | G7IJN1 | 100.0 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 5.4e-57 | 229.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene69820 | -0.82306 | 1.70E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene69820 | 0.820407 | 6.97E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene69820 | 0.806479 | 8.06E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene69820 | 0.816349 | 5.79E-52 | -1.69E-46 |
| MS.gene049411 | MS.gene69820 | 0.893071 | 8.84E-75 | -1.69E-46 |
| MS.gene049680 | MS.gene69820 | 0.862043 | 6.70E-64 | -1.69E-46 |
| MS.gene049807 | MS.gene69820 | 0.841626 | 4.24E-58 | -1.69E-46 |
| MS.gene05029 | MS.gene69820 | 0.830025 | 3.70E-55 | -1.69E-46 |
| MS.gene050437 | MS.gene69820 | 0.828109 | 1.08E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene69820 | 0.81493 | 1.20E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene69820 | 0.830084 | 3.58E-55 | -1.69E-46 |
| MS.gene050752 | MS.gene69820 | 0.902907 | 5.99E-79 | -1.69E-46 |
| MS.gene050838 | MS.gene69820 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene69820 | 0.850351 | 1.80E-60 | -1.69E-46 |
| MS.gene050955 | MS.gene69820 | 0.896861 | 2.46E-76 | -1.69E-46 |
| MS.gene050985 | MS.gene69820 | 0.814303 | 1.65E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene69820 | 0.859052 | 5.40E-63 | -1.69E-46 |
| MS.gene051019 | MS.gene69820 | 0.805808 | 1.12E-49 | -1.69E-46 |
| MS.gene051043 | MS.gene69820 | 0.847677 | 9.94E-60 | -1.69E-46 |
| MS.gene051234 | MS.gene69820 | 0.893328 | 6.96E-75 | -1.69E-46 |
| MS.gene051343 | MS.gene69820 | 0.82822 | 1.01E-54 | -1.69E-46 |
| MS.gene051642 | MS.gene69820 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene051699 | MS.gene69820 | 0.825747 | 3.96E-54 | -1.69E-46 |
| MS.gene051731 | MS.gene69820 | 0.818803 | 1.62E-52 | -1.69E-46 |
| MS.gene051902 | MS.gene69820 | 0.813956 | 1.97E-51 | -1.69E-46 |
| MS.gene052072 | MS.gene69820 | 0.89047 | 9.57E-74 | -1.69E-46 |
| MS.gene052296 | MS.gene69820 | 0.838126 | 3.46E-57 | -1.69E-46 |
| MS.gene052307 | MS.gene69820 | 0.811119 | 8.21E-51 | -1.69E-46 |
| MS.gene052335 | MS.gene69820 | 0.825388 | 4.82E-54 | -1.69E-46 |
| MS.gene052479 | MS.gene69820 | 0.809648 | 1.71E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene69820 | 0.833035 | 6.72E-56 | -1.69E-46 |
| MS.gene052793 | MS.gene69820 | 0.864033 | 1.63E-64 | -1.69E-46 |
| MS.gene052947 | MS.gene69820 | 0.806418 | 8.31E-50 | -1.69E-46 |
| MS.gene053045 | MS.gene69820 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene69820 | 0.801942 | 7.10E-49 | -1.69E-46 |
| MS.gene053228 | MS.gene69820 | 0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene69820 | -0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene69820 | 0.813822 | 2.11E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene69820 | 0.836136 | 1.12E-56 | -1.69E-46 |
| MS.gene054004 | MS.gene69820 | 0.887231 | 1.71E-72 | -1.69E-46 |
| MS.gene054005 | MS.gene69820 | 0.852985 | 3.22E-61 | -1.69E-46 |
| MS.gene054142 | MS.gene69820 | 0.811899 | 5.56E-51 | -1.69E-46 |
| MS.gene054403 | MS.gene69820 | 0.90544 | 4.28E-80 | -1.69E-46 |
| MS.gene054413 | MS.gene69820 | 0.82684 | 2.18E-54 | -1.69E-46 |
| MS.gene05469 | MS.gene69820 | 0.819699 | 1.01E-52 | -1.69E-46 |
| MS.gene054709 | MS.gene69820 | 0.843948 | 1.02E-58 | -1.69E-46 |
| MS.gene055150 | MS.gene69820 | 0.819646 | 1.04E-52 | -1.69E-46 |
| MS.gene055221 | MS.gene69820 | 0.807914 | 4.01E-50 | -1.69E-46 |
| MS.gene055339 | MS.gene69820 | 0.863322 | 2.70E-64 | -1.69E-46 |
| MS.gene055555 | MS.gene69820 | 0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene055765 | MS.gene69820 | 0.842745 | 2.14E-58 | -1.69E-46 |
| MS.gene056082 | MS.gene69820 | 0.812806 | 3.52E-51 | -1.69E-46 |
| MS.gene05648 | MS.gene69820 | 0.822289 | 2.56E-53 | -1.69E-46 |
| MS.gene056578 | MS.gene69820 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene056693 | MS.gene69820 | 0.829096 | 6.23E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene69820 | 0.824813 | 6.58E-54 | -1.69E-46 |
| MS.gene056881 | MS.gene69820 | 0.838918 | 2.16E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene69820 | 0.880255 | 6.38E-70 | -1.69E-46 |
| MS.gene057694 | MS.gene69820 | 0.84228 | 2.85E-58 | -1.69E-46 |
| MS.gene057705 | MS.gene69820 | 0.82946 | 5.09E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene69820 | 0.804795 | 1.82E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene69820 | 0.818024 | 2.43E-52 | -1.69E-46 |
| MS.gene058149 | MS.gene69820 | 0.84974 | 2.66E-60 | -1.69E-46 |
| MS.gene058245 | MS.gene69820 | 0.823786 | 1.15E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene69820 | 0.800492 | 1.41E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene69820 | 0.843776 | 1.14E-58 | -1.69E-46 |
| MS.gene059227 | MS.gene69820 | 0.83059 | 2.70E-55 | -1.69E-46 |
| MS.gene059778 | MS.gene69820 | 0.82664 | 2.43E-54 | -1.69E-46 |
| MS.gene059802 | MS.gene69820 | 0.864676 | 1.02E-64 | -1.69E-46 |
| MS.gene05985 | MS.gene69820 | -0.856097 | 4.05E-62 | -1.69E-46 |
| MS.gene059949 | MS.gene69820 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene69820 | 0.849238 | 3.68E-60 | -1.69E-46 |
| MS.gene060821 | MS.gene69820 | 0.801197 | 1.01E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene69820 | 0.840337 | 9.24E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene69820 | 0.843126 | 1.70E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene69820 | 0.857331 | 1.76E-62 | -1.69E-46 |
| MS.gene061160 | MS.gene69820 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene061243 | MS.gene69820 | 0.825806 | 3.83E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69820.t1 | MTR_2g083180 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 1.67e-82 | 236 |
| MS.gene69820.t1 | MTR_2g083180 | 96.262 | 107 | 4 | 0 | 8 | 114 | 10 | 116 | 2.99e-73 | 213 |
| MS.gene69820.t1 | MTR_4g046733 | 87.719 | 114 | 13 | 1 | 1 | 114 | 1 | 113 | 3.69e-72 | 210 |
| MS.gene69820.t1 | MTR_2g083180 | 91.228 | 114 | 8 | 1 | 1 | 112 | 1 | 114 | 1.32e-71 | 209 |
| MS.gene69820.t1 | MTR_2g083180 | 100.000 | 100 | 0 | 0 | 1 | 100 | 1 | 100 | 1.40e-71 | 209 |
| MS.gene69820.t1 | MTR_3g051950 | 77.193 | 114 | 24 | 1 | 1 | 114 | 1 | 112 | 3.86e-60 | 180 |
| MS.gene69820.t1 | MTR_2g083180 | 100.000 | 83 | 0 | 0 | 1 | 83 | 1 | 83 | 2.71e-58 | 175 |
| MS.gene69820.t1 | MTR_5g092820 | 72.973 | 111 | 28 | 1 | 4 | 114 | 2 | 110 | 1.86e-55 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69820.t1 | AT4G27130 | 86.842 | 114 | 14 | 1 | 1 | 114 | 1 | 113 | 9.73e-72 | 209 |
| MS.gene69820.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene69820.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene69820.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene69820.t1 | AT5G54760 | 85.965 | 114 | 15 | 1 | 1 | 114 | 1 | 113 | 4.83e-71 | 207 |
| MS.gene69820.t1 | AT1G54290 | 85.088 | 114 | 16 | 1 | 1 | 114 | 1 | 113 | 2.45e-70 | 206 |
| MS.gene69820.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
| MS.gene69820.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
| MS.gene69820.t1 | AT5G54940 | 74.561 | 114 | 27 | 1 | 1 | 114 | 1 | 112 | 2.95e-58 | 175 |
Find 25 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCTGAGGACGCCGGTGC+TGG | 0.285317 | 2.4:-16145262 | MS.gene69820:CDS |
| AAGGAGCATATTAAAATTCA+TGG | 0.292939 | 2.4:-16143981 | MS.gene69820:CDS |
| TTCGCTGCTGTATACGAATA+TGG | 0.326573 | 2.4:+16145221 | None:intergenic |
| ATTCATTACCTGGACTAAAA+AGG | 0.327921 | 2.4:+16144952 | None:intergenic |
| CCTGTCCTTGCTCTGGGTCC+TGG | 0.375764 | 2.4:+16145092 | None:intergenic |
| AGACATACCTGTCCTTGCTC+TGG | 0.415595 | 2.4:+16145085 | None:intergenic |
| TACAACAAAACTCCTTCTTA+AGG | 0.416659 | 2.4:+16145128 | None:intergenic |
| GACATACCTGTCCTTGCTCT+GGG | 0.463686 | 2.4:+16145086 | None:intergenic |
| TGAATTCTTTCTTCAATCCC+TGG | 0.465760 | 2.4:+16145173 | None:intergenic |
| GTGTAGGTTATTCAACTTCA+AGG | 0.470369 | 2.4:-16144998 | MS.gene69820:intron |
| TTGTAATGGTACAGTTGTCC+AGG | 0.470439 | 2.4:-16145110 | MS.gene69820:CDS |
| ATGCTGAGGACGCCGGTGCT+GGG | 0.477491 | 2.4:-16145261 | MS.gene69820:CDS |
| TCAGCATTTGCCTCAGCAAA+AGG | 0.478903 | 2.4:+16145277 | None:intergenic |
| ATTCGTATACAGCAGCGAAA+TGG | 0.491023 | 2.4:-16145217 | MS.gene69820:CDS |
| CGCCGGTGCTGGGTCATCAA+AGG | 0.522725 | 2.4:-16145251 | MS.gene69820:CDS |
| ACAGGCTGGAATCGTGAAGA+AGG | 0.545416 | 2.4:-16144000 | MS.gene69820:intron |
| AAAAGCTTGACAACTGTCCA+GGG | 0.558576 | 2.4:-16145190 | MS.gene69820:CDS |
| TTCAACTTCAAGGCGATCAG+AGG | 0.577444 | 2.4:-16144988 | MS.gene69820:CDS |
| GAGGCAAATGCTGAGGACGC+CGG | 0.578099 | 2.4:-16145268 | MS.gene69820:CDS |
| CTCCTTTGATGACCCAGCAC+CGG | 0.583753 | 2.4:+16145249 | None:intergenic |
| GATTCTGAAAGACCTTAAGA+AGG | 0.584832 | 2.4:-16145140 | MS.gene69820:CDS |
| CCAGGACCCAGAGCAAGGAC+AGG | 0.587475 | 2.4:-16145092 | MS.gene69820:intron |
| GCACAAATTCCTACTGCCTA+CGG | 0.609588 | 2.4:-16146304 | MS.gene69820:intron |
| GTTGTCCAGGACCCAGAGCA+AGG | 0.630590 | 2.4:-16145097 | MS.gene69820:CDS |
| TCCAACTTACCGTAGGCAGT+AGG | 0.690363 | 2.4:+16146295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAATTTTTATTATCTTT+AGG | - | chr2.4:16144187-16144206 | MS.gene69820:intron | 10.0% |
| !! | AGAAAATATCAAAAGTAAAA+CGG | + | chr2.4:16145472-16145491 | None:intergenic | 15.0% |
| !! | TAAACATAAAATAATGTCAA+AGG | + | chr2.4:16145699-16145718 | None:intergenic | 15.0% |
| !! | TTTACCCATAAATTTATATT+TGG | - | chr2.4:16145985-16146004 | MS.gene69820:intron | 15.0% |
| !!! | AAATTGAATTTTTAAAGCTT+AGG | - | chr2.4:16144807-16144826 | MS.gene69820:intron | 15.0% |
| !!! | CTTCAAATAACATTTTTTTA+TGG | - | chr2.4:16145273-16145292 | MS.gene69820:CDS | 15.0% |
| !!! | TTTCTAAAATAGTTTTTTCT+GGG | - | chr2.4:16144631-16144650 | MS.gene69820:intron | 15.0% |
| !!! | TTTTCTAAAATAGTTTTTTC+TGG | - | chr2.4:16144630-16144649 | MS.gene69820:intron | 15.0% |
| !! | ATCCACCAAATATAAATTTA+TGG | + | chr2.4:16145993-16146012 | None:intergenic | 20.0% |
| !! | GTAAAACGGAAAAATAAAAA+AGG | + | chr2.4:16145458-16145477 | None:intergenic | 20.0% |
| !! | TCCACCAAATATAAATTTAT+GGG | + | chr2.4:16145992-16146011 | None:intergenic | 20.0% |
| !!! | AAAAAGAAGTCTGTTTTTAA+AGG | - | chr2.4:16145564-16145583 | MS.gene69820:intron | 20.0% |
| !!! | ATAACATTTTTTTATGGTGT+AGG | - | chr2.4:16145279-16145298 | MS.gene69820:CDS | 20.0% |
| !!! | ATATTGCTTTTACTTTTACT+TGG | - | chr2.4:16144385-16144404 | MS.gene69820:intron | 20.0% |
| !!! | ATCAACTATTTTTACTAAAC+AGG | - | chr2.4:16145796-16145815 | MS.gene69820:intron | 20.0% |
| !!! | GTAAAAATAGTTGATATTCT+AGG | + | chr2.4:16145791-16145810 | None:intergenic | 20.0% |
| !!! | TCAACTATTTTTACTAAACA+GGG | - | chr2.4:16145797-16145816 | MS.gene69820:intron | 20.0% |
| !!! | TTCTAAAATAGTTTTTTCTG+GGG | - | chr2.4:16144632-16144651 | MS.gene69820:intron | 20.0% |
| !!! | TTGATCTGAAATAGTATTTT+GGG | - | chr2.4:16144768-16144787 | MS.gene69820:intron | 20.0% |
| !!! | TTTACTTTTGATATTTTCTG+TGG | - | chr2.4:16145473-16145492 | MS.gene69820:intron | 20.0% |
| !!! | TTTGATCTGAAATAGTATTT+TGG | - | chr2.4:16144767-16144786 | MS.gene69820:intron | 20.0% |
| ! | ACCCATAAATTTATATTTGG+TGG | - | chr2.4:16145988-16146007 | MS.gene69820:intron | 25.0% |
| ! | AGATGAAGAATAGAAATAGA+TGG | - | chr2.4:16144898-16144917 | MS.gene69820:intron | 25.0% |
| ! | AGATTGGAATGTTTATACTT+TGG | - | chr2.4:16144671-16144690 | MS.gene69820:intron | 25.0% |
| ! | ATAGAAGAATTTCTCATTTC+TGG | + | chr2.4:16144294-16144313 | None:intergenic | 25.0% |
| ! | CATCTCGTTAAATAATGAAA+TGG | + | chr2.4:16144579-16144598 | None:intergenic | 25.0% |
| ! | GATTGGAATGTTTATACTTT+GGG | - | chr2.4:16144672-16144691 | MS.gene69820:intron | 25.0% |
| ! | TCAAAGTTATGTACAATGAT+TGG | + | chr2.4:16144752-16144771 | None:intergenic | 25.0% |
| ! | TTAAGCATCTTGTTCAATAA+TGG | + | chr2.4:16144723-16144742 | None:intergenic | 25.0% |
| ! | TTAATGAAAATAGAGCTGTT+TGG | - | chr2.4:16145623-16145642 | MS.gene69820:intron | 25.0% |
| ! | TTATTTGAATTAAGCATAGC+AGG | + | chr2.4:16145662-16145681 | None:intergenic | 25.0% |
| !! | AAATGTTATTTGAAGCAACA+AGG | + | chr2.4:16145268-16145287 | None:intergenic | 25.0% |
| !! | AAGGAGCATATTAAAATTCA+TGG | - | chr2.4:16146312-16146331 | MS.gene69820:CDS | 25.0% |
| !! | AATGTTATTTGAAGCAACAA+GGG | + | chr2.4:16145267-16145286 | None:intergenic | 25.0% |
| !!! | AATAAAAAAGGTACTTAACC+AGG | + | chr2.4:16145446-16145465 | None:intergenic | 25.0% |
| !!! | ATAAAAAAGGTACTTAACCA+GGG | + | chr2.4:16145445-16145464 | None:intergenic | 25.0% |
| !!! | TGATCTGAAATAGTATTTTG+GGG | - | chr2.4:16144769-16144788 | MS.gene69820:intron | 25.0% |
| AAAAAATTCTGTGCGATTCT+TGG | + | chr2.4:16144613-16144632 | None:intergenic | 30.0% | |
| AATAAACGTTTGTCACTACA+TGG | + | chr2.4:16146123-16146142 | None:intergenic | 30.0% | |
| AATGAATGACTTCACATCTT+TGG | - | chr2.4:16145357-16145376 | MS.gene69820:intron | 30.0% | |
| AGAATATAACAGATCGTTGT+AGG | + | chr2.4:16146065-16146084 | None:intergenic | 30.0% | |
| ATATGATATATGACTCCTGT+GGG | - | chr2.4:16144971-16144990 | MS.gene69820:CDS | 30.0% | |
| ATTCATTACCTGGACTAAAA+AGG | + | chr2.4:16145344-16145363 | None:intergenic | 30.0% | |
| CAATTATACTGTGTACTGTT+GGG | - | chr2.4:16144116-16144135 | MS.gene69820:intron | 30.0% | |
| GAATTTACTAGTCAATTGTC+AGG | + | chr2.4:16144228-16144247 | None:intergenic | 30.0% | |
| GATTTAGATACGTAAATCAC+TGG | - | chr2.4:16146031-16146050 | MS.gene69820:intron | 30.0% | |
| TACAACAAAACTCCTTCTTA+AGG | + | chr2.4:16145168-16145187 | None:intergenic | 30.0% | |
| TATCTAAATCCGTTCTATAG+AGG | + | chr2.4:16146021-16146040 | None:intergenic | 30.0% | |
| TATTCATGTCATTCATCGTA+TGG | - | chr2.4:16146139-16146158 | MS.gene69820:intron | 30.0% | |
| TCAATTATACTGTGTACTGT+TGG | - | chr2.4:16144115-16144134 | MS.gene69820:intron | 30.0% | |
| ! | AATTTTAGATCCTTTTGCTG+AGG | - | chr2.4:16145006-16145025 | MS.gene69820:intron | 30.0% |
| ! | ATGTTATTTGAAGCAACAAG+GGG | + | chr2.4:16145266-16145285 | None:intergenic | 30.0% |
| !!! | AAGAAGGAGTTTTGTTGTAA+TGG | - | chr2.4:16145169-16145188 | MS.gene69820:CDS | 30.0% |
| AAGGCATATGCTTAGCTTAT+TGG | - | chr2.4:16145583-16145602 | MS.gene69820:intron | 35.0% | |
| AGGATCTTAACGTTTGTGAA+GGG | - | chr2.4:16144827-16144846 | MS.gene69820:intron | 35.0% | |
| ATGTGAAGTCATTCATTACC+TGG | + | chr2.4:16145354-16145373 | None:intergenic | 35.0% | |
| GATATGATATATGACTCCTG+TGG | - | chr2.4:16144970-16144989 | MS.gene69820:CDS | 35.0% | |
| GTAAGAAAGCAACTCATTTC+TGG | + | chr2.4:16144363-16144382 | None:intergenic | 35.0% | |
| GTGTAGGTTATTCAACTTCA+AGG | - | chr2.4:16145295-16145314 | MS.gene69820:intron | 35.0% | |
| TACATAATGAATGCTGTGTG+AGG | + | chr2.4:16144879-16144898 | None:intergenic | 35.0% | |
| TAGGATCTTAACGTTTGTGA+AGG | - | chr2.4:16144826-16144845 | MS.gene69820:intron | 35.0% | |
| TATTCATGCCTTTCATTGCA+TGG | - | chr2.4:16146182-16146201 | MS.gene69820:intron | 35.0% | |
| TGAATTCTTTCTTCAATCCC+TGG | + | chr2.4:16145123-16145142 | None:intergenic | 35.0% | |
| TTCAAATTCACAAGTGCAGA+GGG | + | chr2.4:16146274-16146293 | None:intergenic | 35.0% | |
| TTCATGATATGCAGTCATTC+TGG | - | chr2.4:16144072-16144091 | MS.gene69820:intron | 35.0% | |
| ! | ATATGCAGTCATTCTGGAAA+GGG | - | chr2.4:16144078-16144097 | MS.gene69820:intron | 35.0% |
| ! | GATTCTGAAAGACCTTAAGA+AGG | - | chr2.4:16145153-16145172 | MS.gene69820:CDS | 35.0% |
| ! | TCAGTTTTCCATGCAATGAA+AGG | + | chr2.4:16146193-16146212 | None:intergenic | 35.0% |
| ! | TGCTTAACGTGGTTTAAGAT+TGG | - | chr2.4:16144655-16144674 | MS.gene69820:intron | 35.0% |
| ! | TTTGTTAGCTTCTCAGCAAT+AGG | - | chr2.4:16145752-16145771 | MS.gene69820:intron | 35.0% |
| !! | AATCTGAGACAGCATTTTCA+AGG | + | chr2.4:16144144-16144163 | None:intergenic | 35.0% |
| !! | CATTTCTGGAGTTTAGTTGA+AGG | + | chr2.4:16144349-16144368 | None:intergenic | 35.0% |
| !!! | AATAGTATTTTGGGGTCTTG+AGG | - | chr2.4:16144777-16144796 | MS.gene69820:intron | 35.0% |
| !!! | GTGTTTTTTTCCTCCTGATT+GGG | - | chr2.4:16145827-16145846 | MS.gene69820:intron | 35.0% |
| !!! | TGTGTTTTTTTCCTCCTGAT+TGG | - | chr2.4:16145826-16145845 | MS.gene69820:intron | 35.0% |
| AAAAAGCTTGACAACTGTCC+AGG | - | chr2.4:16145102-16145121 | MS.gene69820:CDS | 40.0% | |
| AAAAGCTTGACAACTGTCCA+GGG | - | chr2.4:16145103-16145122 | MS.gene69820:CDS | 40.0% | |
| ACTTATAGAGTTGCCTTTCC+CGG | - | chr2.4:16145945-16145964 | MS.gene69820:intron | 40.0% | |
| ACTTGTGAATTTGAACAGGC+TGG | - | chr2.4:16146279-16146298 | MS.gene69820:intron | 40.0% | |
| AGGAGGAAAAAAACACACTG+AGG | + | chr2.4:16145823-16145842 | None:intergenic | 40.0% | |
| ATAGAGTTCCAACTTACCGT+AGG | + | chr2.4:16144008-16144027 | None:intergenic | 40.0% | |
| ATTCGTATACAGCAGCGAAA+TGG | - | chr2.4:16145076-16145095 | MS.gene69820:intron | 40.0% | |
| CTGCACTTGTGAATTTGAAC+AGG | - | chr2.4:16146275-16146294 | MS.gene69820:intron | 40.0% | |
| GGATGTATGCCTCTATAGAA+CGG | - | chr2.4:16146009-16146028 | MS.gene69820:intron | 40.0% | |
| GTACAAGATCATTCCCAATC+AGG | + | chr2.4:16145843-16145862 | None:intergenic | 40.0% | |
| GTTCAAATTCACAAGTGCAG+AGG | + | chr2.4:16146275-16146294 | None:intergenic | 40.0% | |
| TACTTAACCAGGGAAACAGA+TGG | + | chr2.4:16145435-16145454 | None:intergenic | 40.0% | |
| TTCGCTGCTGTATACGAATA+TGG | + | chr2.4:16145075-16145094 | None:intergenic | 40.0% | |
| TTGTAATGGTACAGTTGTCC+AGG | - | chr2.4:16145183-16145202 | MS.gene69820:CDS | 40.0% | |
| ! | GATATGCAGTCATTCTGGAA+AGG | - | chr2.4:16144077-16144096 | MS.gene69820:intron | 40.0% |
| ! | TGTCTGAGATCAAGTTTCTC+TGG | - | chr2.4:16145516-16145535 | MS.gene69820:intron | 40.0% |
| !! | TGTGTCTACCTTTTTAGTCC+AGG | - | chr2.4:16145333-16145352 | MS.gene69820:intron | 40.0% |
| !! | TTGGGTTTTATCGTGTGTGA+AGG | - | chr2.4:16144690-16144709 | MS.gene69820:intron | 40.0% |
| AAGACTGTTTACCCAAGTCC+CGG | + | chr2.4:16145967-16145986 | None:intergenic | 45.0% | |
| ATAAGTGCCAACCTGCTCAA+AGG | + | chr2.4:16145931-16145950 | None:intergenic | 45.0% | |
| CAAGATCATTCCCAATCAGG+AGG | + | chr2.4:16145840-16145859 | None:intergenic | 45.0% | |
| CTTATAGAGTTGCCTTTCCC+GGG | - | chr2.4:16145946-16145965 | MS.gene69820:intron | 45.0% | |
| GACAGACAACACGCATCAAT+AGG | + | chr2.4:16144037-16144056 | None:intergenic | 45.0% | |
| GCACAAATTCCTACTGCCTA+CGG | - | chr2.4:16143989-16144008 | MS.gene69820:CDS | 45.0% | |
| GTGGCGTAATTTGATCTGAG+TGG | - | chr2.4:16145492-16145511 | MS.gene69820:intron | 45.0% | |
| TCAGCATTTGCCTCAGCAAA+AGG | + | chr2.4:16145019-16145038 | None:intergenic | 45.0% | |
| TTCAACTTCAAGGCGATCAG+AGG | - | chr2.4:16145305-16145324 | MS.gene69820:intron | 45.0% | |
| TTCACAAGTGCAGAGGGATA+AGG | + | chr2.4:16146268-16146287 | None:intergenic | 45.0% | |
| ! | TTTTGCTGAGGCAAATGCTG+AGG | - | chr2.4:16145018-16145037 | MS.gene69820:intron | 45.0% |
| !!! | AGTATTTTGGGGTCTTGAGG+TGG | - | chr2.4:16144780-16144799 | MS.gene69820:intron | 45.0% |
| !!! | TTTTTCTGGGGTGCTTAACG+TGG | - | chr2.4:16144644-16144663 | MS.gene69820:intron | 45.0% |
| !! | TATAAGTAAAAAAAAAAATA+GGG | + | chr2.4:16144423-16144442 | None:intergenic | 5.0% |
| !! | TTATAAGTAAAAAAAAAAAT+AGG | + | chr2.4:16144424-16144443 | None:intergenic | 5.0% |
| ACAGGCTGGAATCGTGAAGA+AGG | - | chr2.4:16146293-16146312 | MS.gene69820:intron | 50.0% | |
| AGACATACCTGTCCTTGCTC+TGG | + | chr2.4:16145211-16145230 | None:intergenic | 50.0% | |
| AGACTGTTTACCCAAGTCCC+GGG | + | chr2.4:16145966-16145985 | None:intergenic | 50.0% | |
| ATTGTTGCCACACATCCCAC+AGG | + | chr2.4:16144989-16145008 | None:intergenic | 50.0% | |
| CAGGGAAACAGATGGATCTC+AGG | + | chr2.4:16145427-16145446 | None:intergenic | 50.0% | |
| CTGAGATCCATCTGTTTCCC+TGG | - | chr2.4:16145425-16145444 | MS.gene69820:intron | 50.0% | |
| GACATACCTGTCCTTGCTCT+GGG | + | chr2.4:16145210-16145229 | None:intergenic | 50.0% | |
| TATGACTCCTGTGGGATGTG+TGG | - | chr2.4:16144979-16144998 | MS.gene69820:CDS | 50.0% | |
| TCCAACTTACCGTAGGCAGT+AGG | + | chr2.4:16144001-16144020 | None:intergenic | 50.0% | |
| TCCTACTGCCTACGGTAAGT+TGG | - | chr2.4:16143997-16144016 | MS.gene69820:CDS | 50.0% | |
| AGTTGCCTTTCCCGGGACTT+GGG | - | chr2.4:16145953-16145972 | MS.gene69820:intron | 55.0% | |
| CACCAGTCCTTTGAGCAGGT+TGG | - | chr2.4:16145921-16145940 | MS.gene69820:intron | 55.0% | |
| GTTTACCCAAGTCCCGGGAA+AGG | + | chr2.4:16145961-16145980 | None:intergenic | 55.0% | |
| TGCCAACCTGCTCAAAGGAC+TGG | + | chr2.4:16145926-16145945 | None:intergenic | 55.0% | |
| TTCGCACCAGTCCTTTGAGC+AGG | - | chr2.4:16145917-16145936 | MS.gene69820:intron | 55.0% | |
| ! | CTCCTTTGATGACCCAGCAC+CGG | + | chr2.4:16145047-16145066 | None:intergenic | 55.0% |
| GAGGCAAATGCTGAGGACGC+CGG | - | chr2.4:16145025-16145044 | MS.gene69820:intron | 60.0% | |
| GAGTTGCCTTTCCCGGGACT+TGG | - | chr2.4:16145952-16145971 | MS.gene69820:intron | 60.0% | |
| GTTGTCCAGGACCCAGAGCA+AGG | - | chr2.4:16145196-16145215 | MS.gene69820:CDS | 60.0% | |
| AATGCTGAGGACGCCGGTGC+TGG | - | chr2.4:16145031-16145050 | MS.gene69820:intron | 65.0% | |
| ATGCTGAGGACGCCGGTGCT+GGG | - | chr2.4:16145032-16145051 | MS.gene69820:intron | 65.0% | |
| CCAGGACCCAGAGCAAGGAC+AGG | - | chr2.4:16145201-16145220 | MS.gene69820:CDS | 65.0% | |
| ! | CCTGTCCTTGCTCTGGGTCC+TGG | + | chr2.4:16145204-16145223 | None:intergenic | 65.0% |
| ! | CGCCGGTGCTGGGTCATCAA+AGG | - | chr2.4:16145042-16145061 | MS.gene69820:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 16143974 | 16146341 | 16143974 | ID=MS.gene69820 |
| chr2.4 | mRNA | 16143974 | 16146341 | 16143974 | ID=MS.gene69820.t1;Parent=MS.gene69820 |
| chr2.4 | exon | 16146305 | 16146341 | 16146305 | ID=MS.gene69820.t1.exon1;Parent=MS.gene69820.t1 |
| chr2.4 | CDS | 16146305 | 16146341 | 16146305 | ID=cds.MS.gene69820.t1;Parent=MS.gene69820.t1 |
| chr2.4 | exon | 16145093 | 16145301 | 16145093 | ID=MS.gene69820.t1.exon2;Parent=MS.gene69820.t1 |
| chr2.4 | CDS | 16145093 | 16145301 | 16145093 | ID=cds.MS.gene69820.t1;Parent=MS.gene69820.t1 |
| chr2.4 | exon | 16144961 | 16145014 | 16144961 | ID=MS.gene69820.t1.exon3;Parent=MS.gene69820.t1 |
| chr2.4 | CDS | 16144961 | 16145014 | 16144961 | ID=cds.MS.gene69820.t1;Parent=MS.gene69820.t1 |
| chr2.4 | exon | 16143974 | 16144018 | 16143974 | ID=MS.gene69820.t1.exon4;Parent=MS.gene69820.t1 |
| chr2.4 | CDS | 16143974 | 16144018 | 16143974 | ID=cds.MS.gene69820.t1;Parent=MS.gene69820.t1 |
| Gene Sequence |
| Protein sequence |
