Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76305.t1 | XP_013470174.1 | 95.1 | 163 | 5 | 1 | 1 | 163 | 1 | 160 | 7.90E-84 | 319.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76305.t1 | A0A072VQY7 | 95.1 | 163 | 5 | 1 | 1 | 163 | 1 | 160 | 5.7e-84 | 319.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene76305 | -0.821706 | 3.50E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene76305 | -0.840002 | 1.13E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene76305 | -0.801954 | 7.06E-49 | -1.69E-46 |
| MS.gene049501 | MS.gene76305 | -0.813569 | 2.40E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene76305 | -0.824979 | 6.02E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene76305 | -0.829006 | 6.55E-55 | -1.69E-46 |
| MS.gene050020 | MS.gene76305 | -0.838093 | 3.53E-57 | -1.69E-46 |
| MS.gene050237 | MS.gene76305 | -0.801463 | 8.90E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene76305 | -0.821416 | 4.09E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene76305 | -0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene76305 | -0.856415 | 3.27E-62 | -1.69E-46 |
| MS.gene050808 | MS.gene76305 | -0.831065 | 2.06E-55 | -1.69E-46 |
| MS.gene050815 | MS.gene76305 | -0.816977 | 4.19E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene76305 | -0.807822 | 4.19E-50 | -1.69E-46 |
| MS.gene050901 | MS.gene76305 | -0.80522 | 1.48E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene76305 | -0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene76305 | -0.807611 | 4.65E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene76305 | -0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene76305 | -0.809776 | 1.60E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene76305 | -0.834286 | 3.27E-56 | -1.69E-46 |
| MS.gene051577 | MS.gene76305 | -0.824656 | 7.17E-54 | -1.69E-46 |
| MS.gene05157 | MS.gene76305 | -0.832167 | 1.10E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene76305 | -0.803189 | 3.93E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene76305 | -0.827098 | 1.89E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene76305 | -0.801918 | 7.18E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene76305 | -0.849738 | 2.67E-60 | -1.69E-46 |
| MS.gene052239 | MS.gene76305 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene052397 | MS.gene76305 | -0.801509 | 8.71E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene76305 | -0.82184 | 3.26E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene76305 | -0.827833 | 1.26E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene76305 | -0.829504 | 4.96E-55 | -1.69E-46 |
| MS.gene052665 | MS.gene76305 | -0.855525 | 5.95E-62 | -1.69E-46 |
| MS.gene052732 | MS.gene76305 | -0.830044 | 3.67E-55 | -1.69E-46 |
| MS.gene052879 | MS.gene76305 | -0.811819 | 5.79E-51 | -1.69E-46 |
| MS.gene052880 | MS.gene76305 | -0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene76305 | -0.808318 | 3.28E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene76305 | -0.841931 | 3.52E-58 | -1.69E-46 |
| MS.gene053174 | MS.gene76305 | -0.820074 | 8.31E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene76305 | -0.842607 | 2.33E-58 | -1.69E-46 |
| MS.gene053630 | MS.gene76305 | -0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene054550 | MS.gene76305 | -0.804563 | 2.03E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene76305 | -0.846209 | 2.51E-59 | -1.69E-46 |
| MS.gene054651 | MS.gene76305 | -0.802677 | 5.01E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene76305 | -0.854291 | 1.36E-61 | -1.69E-46 |
| MS.gene055466 | MS.gene76305 | -0.872758 | 2.49E-67 | -1.69E-46 |
| MS.gene055468 | MS.gene76305 | -0.868477 | 6.34E-66 | -1.69E-46 |
| MS.gene055469 | MS.gene76305 | -0.828894 | 6.97E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene76305 | 0.890042 | 1.41E-73 | -1.69E-46 |
| MS.gene055778 | MS.gene76305 | -0.800777 | 1.23E-48 | -1.69E-46 |
| MS.gene055808 | MS.gene76305 | -0.808855 | 2.52E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene76305 | -0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene76305 | -0.817066 | 4.00E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene76305 | 0.876913 | 9.56E-69 | -1.69E-46 |
| MS.gene056174 | MS.gene76305 | -0.812131 | 4.95E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene76305 | -0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene76305 | -0.807102 | 5.95E-50 | -1.69E-46 |
| MS.gene057314 | MS.gene76305 | -0.808961 | 2.39E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene76305 | -0.831144 | 1.97E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene76305 | -0.821127 | 4.76E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene76305 | -0.822476 | 2.32E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene76305 | -0.807728 | 4.39E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene76305 | -0.809092 | 2.24E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene76305 | -0.806936 | 6.46E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene76305 | -0.829187 | 5.92E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene76305 | -0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene060194 | MS.gene76305 | -0.80426 | 2.35E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene76305 | -0.853646 | 2.08E-61 | -1.69E-46 |
| MS.gene060587 | MS.gene76305 | -0.848265 | 6.84E-60 | -1.69E-46 |
| MS.gene060634 | MS.gene76305 | 0.815411 | 9.37E-52 | -1.69E-46 |
| MS.gene060917 | MS.gene76305 | -0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene060997 | MS.gene76305 | 0.803804 | 2.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76305.t1 | MTR_1g110760 | 95.092 | 163 | 5 | 1 | 1 | 163 | 1 | 160 | 2.47e-106 | 300 |
| MS.gene76305.t1 | MTR_6g018430 | 45.963 | 161 | 67 | 6 | 4 | 163 | 27 | 168 | 2.11e-34 | 119 |
| MS.gene76305.t1 | MTR_8g104210 | 45.399 | 163 | 68 | 8 | 7 | 163 | 16 | 163 | 5.30e-28 | 102 |
| MS.gene76305.t1 | MTR_8g104210 | 45.399 | 163 | 68 | 8 | 7 | 163 | 25 | 172 | 7.65e-28 | 102 |
| MS.gene76305.t1 | MTR_6g084470 | 45.732 | 164 | 67 | 7 | 5 | 163 | 21 | 167 | 7.60e-27 | 99.8 |
| MS.gene76305.t1 | MTR_1g051170 | 38.931 | 131 | 60 | 4 | 26 | 149 | 31 | 148 | 4.91e-13 | 63.5 |
| MS.gene76305.t1 | MTR_4g087400 | 38.732 | 142 | 58 | 5 | 9 | 149 | 22 | 135 | 1.79e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76305.t1 | AT1G68490 | 59.756 | 164 | 53 | 6 | 4 | 163 | 29 | 183 | 4.78e-49 | 156 |
| MS.gene76305.t1 | AT1G13390 | 51.852 | 162 | 66 | 5 | 4 | 163 | 25 | 176 | 8.24e-41 | 135 |
| MS.gene76305.t1 | AT1G13390 | 51.852 | 162 | 66 | 5 | 4 | 163 | 25 | 176 | 8.24e-41 | 135 |
| MS.gene76305.t1 | AT5G16110 | 50.909 | 165 | 67 | 7 | 4 | 163 | 89 | 244 | 5.19e-35 | 122 |
| MS.gene76305.t1 | AT3G02555 | 46.296 | 162 | 56 | 5 | 5 | 163 | 29 | 162 | 5.82e-27 | 99.8 |
| MS.gene76305.t1 | AT3G02555 | 46.296 | 162 | 56 | 5 | 5 | 163 | 29 | 162 | 5.82e-27 | 99.8 |
Find 65 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCCGGATTGTTACCAAAAT+TGG | 0.118190 | 1.1:-78218941 | None:intergenic |
| GGATGTGTTCGGGCCAATTT+TGG | 0.234336 | 1.1:+78218928 | MS.gene76305:CDS |
| TGCCCTAAGCCCCGCCGTTT+CGG | 0.287589 | 1.1:+78218210 | MS.gene76305:CDS |
| AGTCCGAAACGGCGGGGCTT+AGG | 0.324326 | 1.1:-78218213 | None:intergenic |
| AGTAGCTAACCCACTAATTC+AGG | 0.341828 | 1.1:+78218795 | MS.gene76305:CDS |
| TAATTCAGGATGCTCGATTC+GGG | 0.363565 | 1.1:+78218809 | MS.gene76305:CDS |
| CCTCCCTTCCTTGCAGAAGA+TGG | 0.393816 | 1.1:-78218907 | None:intergenic |
| CTAATTCAGGATGCTCGATT+CGG | 0.401608 | 1.1:+78218808 | MS.gene76305:CDS |
| AGAAGGTGGCAGACCGGATG+GGG | 0.404001 | 1.1:-78218881 | None:intergenic |
| GAGCAGGGATGCTGCAATTA+CGG | 0.410027 | 1.1:-78219002 | None:intergenic |
| GTCCGAAACGGCGGGGCTTA+GGG | 0.414885 | 1.1:-78218212 | None:intergenic |
| CGCCCCTCTCACCGTCGTCA+TGG | 0.419708 | 1.1:+78218845 | MS.gene76305:CDS |
| CAAGGAAGGGAGGATGTGTT+CGG | 0.421741 | 1.1:+78218917 | MS.gene76305:CDS |
| GATCCTTCCGGTGGCATCTC+AGG | 0.425952 | 1.1:+78218268 | MS.gene76305:CDS |
| CTCCCTTCCTTGCAGAAGAT+GGG | 0.432493 | 1.1:-78218906 | None:intergenic |
| AAGGATTCGATTGCCTTGAC+AGG | 0.436802 | 1.1:+78218974 | MS.gene76305:CDS |
| TAATTGCAGCATCCCTGCTC+TGG | 0.448656 | 1.1:+78219005 | MS.gene76305:CDS |
| GCCCCTCTCACCGTCGTCAT+GGG | 0.457309 | 1.1:+78218846 | MS.gene76305:CDS |
| GGAGAAGGTGGCAGACCGGA+TGG | 0.458776 | 1.1:-78218883 | None:intergenic |
| CTCATCTGCGTCAAATCCCT+TGG | 0.463633 | 1.1:+78218417 | MS.gene76305:CDS |
| GGTGGCAGACCGGATGGGGC+AGG | 0.466438 | 1.1:-78218877 | None:intergenic |
| CTGTTGTTCTAAGCCAGAGC+AGG | 0.481278 | 1.1:-78219018 | None:intergenic |
| GAGAAGGTGGCAGACCGGAT+GGG | 0.484866 | 1.1:-78218882 | None:intergenic |
| GTTGAGGAGTCCGAAACGGC+GGG | 0.491911 | 1.1:-78218220 | None:intergenic |
| ACTACCCGAGCAGATCCTTC+CGG | 0.494170 | 1.1:+78218256 | MS.gene76305:CDS |
| GTGGTGGTTCCTGCCCCATC+CGG | 0.495940 | 1.1:+78218868 | MS.gene76305:CDS |
| TTGAATCACACGGTTCAACT+TGG | 0.496164 | 1.1:-78218393 | None:intergenic |
| CTCACCGTCGTCATGGGTGG+TGG | 0.513742 | 1.1:+78218852 | MS.gene76305:CDS |
| TCTGCTCGGGTAGTCGTTGA+CGG | 0.526759 | 1.1:-78218247 | None:intergenic |
| CCACCCATGACGACGGTGAG+AGG | 0.533000 | 1.1:-78218849 | None:intergenic |
| AATCCGGCGGTGAGAGTCGA+AGG | 0.545936 | 1.1:+78218955 | MS.gene76305:CDS |
| TCCCTTCCTTGCAGAAGATG+GGG | 0.546203 | 1.1:-78218905 | None:intergenic |
| AATCGAGCATCCTGAATTAG+TGG | 0.550154 | 1.1:-78218805 | None:intergenic |
| AGTCGTTGACGGCGAAGTTG+AGG | 0.554697 | 1.1:-78218236 | None:intergenic |
| CACCCATGACGACGGTGAGA+GGG | 0.562391 | 1.1:-78218848 | None:intergenic |
| AAGGAAGGGAGGATGTGTTC+GGG | 0.568345 | 1.1:+78218918 | MS.gene76305:CDS |
| GCCACCGGAAGGATCTGCTC+GGG | 0.575084 | 1.1:-78218260 | None:intergenic |
| CGAAGTTGAGGAGTCCGAAA+CGG | 0.580614 | 1.1:-78218224 | None:intergenic |
| TTGGTGAGAATTGTGTCCAA+GGG | 0.586012 | 1.1:-78218433 | None:intergenic |
| CCTCTCACCGTCGTCATGGG+TGG | 0.588491 | 1.1:+78218849 | MS.gene76305:CDS |
| CTTGGTGAGAATTGTGTCCA+AGG | 0.590478 | 1.1:-78218434 | None:intergenic |
| GCAGGATGATGATTGTGATA+CGG | 0.592153 | 1.1:+78218708 | MS.gene76305:intron |
| AGTGGGTTAGCTACTCTGCT+CGG | 0.596257 | 1.1:-78218787 | None:intergenic |
| TGCCACCGGAAGGATCTGCT+CGG | 0.596625 | 1.1:-78218261 | None:intergenic |
| AGGATTCGATTGCCTTGACA+GGG | 0.597575 | 1.1:+78218975 | MS.gene76305:CDS |
| CCATCTTCTGCAAGGAAGGG+AGG | 0.605126 | 1.1:+78218907 | MS.gene76305:CDS |
| CCCTTCCTTGCAGAAGATGG+GGG | 0.610451 | 1.1:-78218904 | None:intergenic |
| ACCCATGACGACGGTGAGAG+GGG | 0.613698 | 1.1:-78218847 | None:intergenic |
| AATCCTTCGACTCTCACCGC+CGG | 0.616188 | 1.1:-78218958 | None:intergenic |
| AGTTGAGGAGTCCGAAACGG+CGG | 0.629025 | 1.1:-78218221 | None:intergenic |
| AATTACGGCTGTCCCTGTCA+AGG | 0.629306 | 1.1:-78218987 | None:intergenic |
| ATCGAGCATCCTGAATTAGT+GGG | 0.630666 | 1.1:-78218804 | None:intergenic |
| GGCGGCGACGAGGCTACTGG+AGG | 0.632101 | 1.1:-78218742 | None:intergenic |
| AAATTCACCTGAGATGCCAC+CGG | 0.634810 | 1.1:-78218275 | None:intergenic |
| TCACCTGAGATGCCACCGGA+AGG | 0.642394 | 1.1:-78218271 | None:intergenic |
| TTTCGACGAAGGAAGATGAA+CGG | 0.643470 | 1.1:+78218171 | None:intergenic |
| GGAACCACCACCCATGACGA+CGG | 0.659927 | 1.1:-78218856 | None:intergenic |
| GCAGATGAGTTTGAATCACA+CGG | 0.662013 | 1.1:-78218403 | None:intergenic |
| TGTTGTTCTAAGCCAGAGCA+GGG | 0.670625 | 1.1:-78219017 | None:intergenic |
| ACCCGAGCAGATCCTTCCGG+TGG | 0.672658 | 1.1:+78218259 | MS.gene76305:CDS |
| AATTCAGGATGCTCGATTCG+GGG | 0.678593 | 1.1:+78218810 | MS.gene76305:CDS |
| GCGGGGCTTAGGGCAAACGA+CGG | 0.692402 | 1.1:-78218202 | None:intergenic |
| CTTGGACACAATTCTCACCA+AGG | 0.706031 | 1.1:+78218435 | MS.gene76305:CDS |
| TTGAGGAGTCCGAAACGGCG+GGG | 0.712058 | 1.1:-78218219 | None:intergenic |
| GGGTTAGCTACTCTGCTCGG+CGG | 0.725325 | 1.1:-78218784 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCATATAAAATAATAG+AGG | - | chr1.1:78218470-78218489 | None:intergenic | 10.0% |
| !!! | CTATTATTTTATATGAATTT+AGG | + | chr1.1:78218470-78218489 | MS.gene76305:intron | 10.0% |
| !!! | AATTGATCTATTTTTAACAT+TGG | + | chr1.1:78218548-78218567 | MS.gene76305:intron | 15.0% |
| !!! | ATATGAATTTAGGTTAAAAT+TGG | + | chr1.1:78218480-78218499 | MS.gene76305:intron | 15.0% |
| !!! | TTTTCTCTTTTAATTTGCTT+TGG | + | chr1.1:78218320-78218339 | MS.gene76305:intron | 20.0% |
| ! | AATAGAGGAATTATTTACCT+TGG | - | chr1.1:78218455-78218474 | None:intergenic | 25.0% |
| ACACAAAGCAATTCAACAAA+AGG | - | chr1.1:78218644-78218663 | None:intergenic | 30.0% | |
| AATCGAGCATCCTGAATTAG+TGG | - | chr1.1:78218808-78218827 | None:intergenic | 40.0% | |
| AGTAGCTAACCCACTAATTC+AGG | + | chr1.1:78218795-78218814 | MS.gene76305:CDS | 40.0% | |
| ATCGAGCATCCTGAATTAGT+GGG | - | chr1.1:78218807-78218826 | None:intergenic | 40.0% | |
| CTAATTCAGGATGCTCGATT+CGG | + | chr1.1:78218808-78218827 | MS.gene76305:CDS | 40.0% | |
| GCAGATGAGTTTGAATCACA+CGG | - | chr1.1:78218406-78218425 | None:intergenic | 40.0% | |
| GCAGGATGATGATTGTGATA+CGG | + | chr1.1:78218708-78218727 | MS.gene76305:intron | 40.0% | |
| TAATTCAGGATGCTCGATTC+GGG | + | chr1.1:78218809-78218828 | MS.gene76305:CDS | 40.0% | |
| TTGAATCACACGGTTCAACT+TGG | - | chr1.1:78218396-78218415 | None:intergenic | 40.0% | |
| TTGGTGAGAATTGTGTCCAA+GGG | - | chr1.1:78218436-78218455 | None:intergenic | 40.0% | |
| !! | CAATTTTGGTAACAATCCGG+CGG | + | chr1.1:78218942-78218961 | MS.gene76305:CDS | 40.0% |
| !! | GGCCAATTTTGGTAACAATC+CGG | + | chr1.1:78218939-78218958 | MS.gene76305:CDS | 40.0% |
| !! | GTTGTGCTTTTGTGATTTGC+AGG | + | chr1.1:78218690-78218709 | MS.gene76305:intron | 40.0% |
| AAATTCACCTGAGATGCCAC+CGG | - | chr1.1:78218278-78218297 | None:intergenic | 45.0% | |
| AAGGATTCGATTGCCTTGAC+AGG | + | chr1.1:78218974-78218993 | MS.gene76305:CDS | 45.0% | |
| AGGATTCGATTGCCTTGACA+GGG | + | chr1.1:78218975-78218994 | MS.gene76305:CDS | 45.0% | |
| CGCCGGATTGTTACCAAAAT+TGG | - | chr1.1:78218944-78218963 | None:intergenic | 45.0% | |
| CTTGGACACAATTCTCACCA+AGG | + | chr1.1:78218435-78218454 | MS.gene76305:CDS | 45.0% | |
| CTTGGTGAGAATTGTGTCCA+AGG | - | chr1.1:78218437-78218456 | None:intergenic | 45.0% | |
| ! | AATTCAGGATGCTCGATTCG+GGG | + | chr1.1:78218810-78218829 | MS.gene76305:CDS | 45.0% |
| AAGGAAGGGAGGATGTGTTC+GGG | + | chr1.1:78218918-78218937 | MS.gene76305:CDS | 50.0% | |
| AATTACGGCTGTCCCTGTCA+AGG | - | chr1.1:78218990-78219009 | None:intergenic | 50.0% | |
| CAAGGAAGGGAGGATGTGTT+CGG | + | chr1.1:78218917-78218936 | MS.gene76305:CDS | 50.0% | |
| CGAAGTTGAGGAGTCCGAAA+CGG | - | chr1.1:78218227-78218246 | None:intergenic | 50.0% | |
| CGGAGACCCACAGAAAAATG+GGG | - | chr1.1:78218767-78218786 | None:intergenic | 50.0% | |
| CTCATCTGCGTCAAATCCCT+TGG | + | chr1.1:78218417-78218436 | MS.gene76305:CDS | 50.0% | |
| CTCCCTTCCTTGCAGAAGAT+GGG | - | chr1.1:78218909-78218928 | None:intergenic | 50.0% | |
| GAGCAGGGATGCTGCAATTA+CGG | - | chr1.1:78219005-78219024 | None:intergenic | 50.0% | |
| GCGGAGACCCACAGAAAAAT+GGG | - | chr1.1:78218768-78218787 | None:intergenic | 50.0% | |
| GGAGACCCACAGAAAAATGG+GGG | - | chr1.1:78218766-78218785 | None:intergenic | 50.0% | |
| TAATTGCAGCATCCCTGCTC+TGG | + | chr1.1:78219005-78219024 | MS.gene76305:CDS | 50.0% | |
| TCCCTTCCTTGCAGAAGATG+GGG | - | chr1.1:78218908-78218927 | None:intergenic | 50.0% | |
| ! | GGATGTGTTCGGGCCAATTT+TGG | + | chr1.1:78218928-78218947 | MS.gene76305:CDS | 50.0% |
| !! | AGTGGGTTAGCTACTCTGCT+CGG | - | chr1.1:78218790-78218809 | None:intergenic | 50.0% |
| AATCCTTCGACTCTCACCGC+CGG | - | chr1.1:78218961-78218980 | None:intergenic | 55.0% | |
| ACTACCCGAGCAGATCCTTC+CGG | + | chr1.1:78218256-78218275 | MS.gene76305:CDS | 55.0% | |
| AGTCGTTGACGGCGAAGTTG+AGG | - | chr1.1:78218239-78218258 | None:intergenic | 55.0% | |
| AGTTGAGGAGTCCGAAACGG+CGG | - | chr1.1:78218224-78218243 | None:intergenic | 55.0% | |
| CCATCTTCTGCAAGGAAGGG+AGG | + | chr1.1:78218907-78218926 | MS.gene76305:CDS | 55.0% | |
| CCCCCATCTTCTGCAAGGAA+GGG | + | chr1.1:78218904-78218923 | MS.gene76305:CDS | 55.0% | |
| CCCTTCCTTGCAGAAGATGG+GGG | - | chr1.1:78218907-78218926 | None:intergenic | 55.0% | |
| CCTCCCTTCCTTGCAGAAGA+TGG | - | chr1.1:78218910-78218929 | None:intergenic | 55.0% | |
| CTTCTCCCCCATCTTCTGCA+AGG | + | chr1.1:78218899-78218918 | MS.gene76305:CDS | 55.0% | |
| CTTGCAGAAGATGGGGGAGA+AGG | - | chr1.1:78218901-78218920 | None:intergenic | 55.0% | |
| GACCCACAGAAAAATGGGGG+CGG | - | chr1.1:78218763-78218782 | None:intergenic | 55.0% | |
| GGCGGAGACCCACAGAAAAA+TGG | - | chr1.1:78218769-78218788 | None:intergenic | 55.0% | |
| TCCCCCATCTTCTGCAAGGA+AGG | + | chr1.1:78218903-78218922 | MS.gene76305:CDS | 55.0% | |
| TCTGCTCGGGTAGTCGTTGA+CGG | - | chr1.1:78218250-78218269 | None:intergenic | 55.0% | |
| AATCCGGCGGTGAGAGTCGA+AGG | + | chr1.1:78218955-78218974 | MS.gene76305:CDS | 60.0% | |
| ACCCATGACGACGGTGAGAG+GGG | - | chr1.1:78218850-78218869 | None:intergenic | 60.0% | |
| AGAAGGTGGCAGACCGGATG+GGG | - | chr1.1:78218884-78218903 | None:intergenic | 60.0% | |
| CACCCATGACGACGGTGAGA+GGG | - | chr1.1:78218851-78218870 | None:intergenic | 60.0% | |
| GAGAAGGTGGCAGACCGGAT+GGG | - | chr1.1:78218885-78218904 | None:intergenic | 60.0% | |
| GATCCTTCCGGTGGCATCTC+AGG | + | chr1.1:78218268-78218287 | MS.gene76305:CDS | 60.0% | |
| GCAGAAGATGGGGGAGAAGG+TGG | - | chr1.1:78218898-78218917 | None:intergenic | 60.0% | |
| GGAACCACCACCCATGACGA+CGG | - | chr1.1:78218859-78218878 | None:intergenic | 60.0% | |
| GTTGAGGAGTCCGAAACGGC+GGG | - | chr1.1:78218223-78218242 | None:intergenic | 60.0% | |
| TCACCTGAGATGCCACCGGA+AGG | - | chr1.1:78218274-78218293 | None:intergenic | 60.0% | |
| TGCCACCGGAAGGATCTGCT+CGG | - | chr1.1:78218264-78218283 | None:intergenic | 60.0% | |
| TTGAGGAGTCCGAAACGGCG+GGG | - | chr1.1:78218222-78218241 | None:intergenic | 60.0% | |
| !! | CGCCGCCCCCATTTTTCTGT+GGG | + | chr1.1:78218758-78218777 | MS.gene76305:CDS | 60.0% |
| !! | GGGTTAGCTACTCTGCTCGG+CGG | - | chr1.1:78218787-78218806 | None:intergenic | 60.0% |
| !! | TCGCCGCCCCCATTTTTCTG+TGG | + | chr1.1:78218757-78218776 | MS.gene76305:CDS | 60.0% |
| ACCCGAGCAGATCCTTCCGG+TGG | + | chr1.1:78218259-78218278 | MS.gene76305:CDS | 65.0% | |
| AGTCCGAAACGGCGGGGCTT+AGG | - | chr1.1:78218216-78218235 | None:intergenic | 65.0% | |
| CCACCCATGACGACGGTGAG+AGG | - | chr1.1:78218852-78218871 | None:intergenic | 65.0% | |
| CCTCTCACCGTCGTCATGGG+TGG | + | chr1.1:78218849-78218868 | MS.gene76305:CDS | 65.0% | |
| CTCACCGTCGTCATGGGTGG+TGG | + | chr1.1:78218852-78218871 | MS.gene76305:CDS | 65.0% | |
| GAAAAATGGGGGCGGCGACG+AGG | - | chr1.1:78218755-78218774 | None:intergenic | 65.0% | |
| GCCACCGGAAGGATCTGCTC+GGG | - | chr1.1:78218263-78218282 | None:intergenic | 65.0% | |
| GCCCCTCTCACCGTCGTCAT+GGG | + | chr1.1:78218846-78218865 | MS.gene76305:CDS | 65.0% | |
| GCGGGGCTTAGGGCAAACGA+CGG | - | chr1.1:78218205-78218224 | None:intergenic | 65.0% | |
| GGAGAAGGTGGCAGACCGGA+TGG | - | chr1.1:78218886-78218905 | None:intergenic | 65.0% | |
| GTCCGAAACGGCGGGGCTTA+GGG | - | chr1.1:78218215-78218234 | None:intergenic | 65.0% | |
| GTGGTGGTTCCTGCCCCATC+CGG | + | chr1.1:78218868-78218887 | MS.gene76305:CDS | 65.0% | |
| TGCCCTAAGCCCCGCCGTTT+CGG | + | chr1.1:78218210-78218229 | MS.gene76305:CDS | 65.0% | |
| TGGGGGAGAAGGTGGCAGAC+CGG | - | chr1.1:78218890-78218909 | None:intergenic | 65.0% | |
| CGCCCCTCTCACCGTCGTCA+TGG | + | chr1.1:78218845-78218864 | MS.gene76305:CDS | 70.0% | |
| GGCGGCGACGAGGCTACTGG+AGG | - | chr1.1:78218745-78218764 | None:intergenic | 75.0% | |
| GGTGGCAGACCGGATGGGGC+AGG | - | chr1.1:78218880-78218899 | None:intergenic | 75.0% | |
| ! | GGGGGCGGCGACGAGGCTAC+TGG | - | chr1.1:78218748-78218767 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78218186 | 78219032 | 78218186 | ID=MS.gene76305 |
| chr1.1 | mRNA | 78218186 | 78219032 | 78218186 | ID=MS.gene76305.t1;Parent=MS.gene76305 |
| chr1.1 | exon | 78218186 | 78218289 | 78218186 | ID=MS.gene76305.t1.exon1;Parent=MS.gene76305.t1 |
| chr1.1 | CDS | 78218186 | 78218289 | 78218186 | ID=cds.MS.gene76305.t1;Parent=MS.gene76305.t1 |
| chr1.1 | exon | 78218390 | 78218456 | 78218390 | ID=MS.gene76305.t1.exon2;Parent=MS.gene76305.t1 |
| chr1.1 | CDS | 78218390 | 78218456 | 78218390 | ID=cds.MS.gene76305.t1;Parent=MS.gene76305.t1 |
| chr1.1 | exon | 78218712 | 78219032 | 78218712 | ID=MS.gene76305.t1.exon3;Parent=MS.gene76305.t1 |
| chr1.1 | CDS | 78218712 | 78219032 | 78218712 | ID=cds.MS.gene76305.t1;Parent=MS.gene76305.t1 |
| Gene Sequence |
| Protein sequence |
