Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061072.t1 | KEH34001.1 | 88.7 | 97 | 11 | 0 | 136 | 232 | 1 | 97 | 8.70E-36 | 160.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061072.t1 | P52416 | 76.3 | 38 | 9 | 0 | 165 | 202 | 368 | 405 | 2.4e-10 | 67.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061072.t1 | A0A072UX42 | 88.7 | 97 | 11 | 0 | 136 | 232 | 1 | 97 | 6.3e-36 | 160.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055058 | MS.gene061072 | 0.806092 | 9.73E-50 | -1.69E-46 |
| MS.gene061072 | MS.gene26056 | 0.813478 | 2.51E-51 | -1.69E-46 |
| MS.gene061072 | MS.gene59780 | 0.81425 | 1.69E-51 | -1.69E-46 |
| MS.gene061072 | MS.gene82962 | 0.819843 | 9.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061072.t1 | MTR_3g056715 | 88.660 | 97 | 11 | 0 | 136 | 232 | 1 | 97 | 7.06e-54 | 168 |
| MS.gene061072.t1 | MTR_5g009630 | 54.930 | 142 | 42 | 4 | 1 | 130 | 27 | 158 | 2.29e-35 | 125 |
| MS.gene061072.t1 | MTR_7g104390 | 95.918 | 49 | 2 | 0 | 82 | 130 | 47 | 95 | 1.41e-25 | 96.7 |
| MS.gene061072.t1 | MTR_2g008190 | 85.417 | 48 | 7 | 0 | 83 | 130 | 41 | 88 | 9.07e-19 | 85.1 |
| MS.gene061072.t1 | MTR_2g008190 | 85.417 | 48 | 7 | 0 | 83 | 130 | 41 | 88 | 1.10e-18 | 84.7 |
| MS.gene061072.t1 | MTR_7g104380 | 66.000 | 50 | 15 | 1 | 163 | 212 | 12 | 59 | 4.35e-14 | 69.3 |
| MS.gene061072.t1 | MTR_3g082150 | 72.500 | 40 | 11 | 0 | 165 | 204 | 374 | 413 | 1.48e-13 | 69.7 |
| MS.gene061072.t1 | MTR_5g097010 | 72.500 | 40 | 11 | 0 | 165 | 204 | 375 | 414 | 1.60e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061072.t1 | AT5G48300 | 70.000 | 40 | 12 | 0 | 165 | 204 | 380 | 419 | 2.25e-13 | 69.3 |
| MS.gene061072.t1 | AT5G57190 | 38.318 | 107 | 53 | 4 | 86 | 189 | 44 | 140 | 2.33e-11 | 63.2 |
| MS.gene061072.t1 | AT5G57190 | 38.318 | 107 | 53 | 4 | 86 | 189 | 44 | 140 | 2.58e-11 | 63.2 |
| MS.gene061072.t1 | AT4G25970 | 35.965 | 114 | 62 | 3 | 78 | 189 | 37 | 141 | 8.54e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCACAACTTAAATAAA+AGG | 0.227039 | 1.4:-18948064 | None:intergenic |
| TTCAAGAACTTTGGTCTTCC+AGG | 0.259969 | 1.4:-18950474 | None:intergenic |
| ATTAAGGCTTAGTTTCATTA+AGG | 0.279842 | 1.4:+18947530 | MS.gene061072:CDS |
| CGGGGAAGGATGTGCGATTA+AGG | 0.288812 | 1.4:+18949762 | MS.gene061072:CDS |
| TTTACACGTCTTTGACTTCT+TGG | 0.292008 | 1.4:+18950389 | MS.gene061072:CDS |
| GAGGGCGAACAGAGCGATTC+CGG | 0.330572 | 1.4:-18948229 | None:intergenic |
| AACTAACTGTTGGGATGATT+TGG | 0.331373 | 1.4:-18948322 | None:intergenic |
| GTATTTGGTGCAGAAAATTC+AGG | 0.340118 | 1.4:+18950366 | MS.gene061072:intron |
| AGTTGGACTATATGACATTA+AGG | 0.351562 | 1.4:+18947514 | MS.gene061072:CDS |
| GATATCACTGATAGTGTTAT+CGG | 0.379793 | 1.4:+18949742 | MS.gene061072:CDS |
| CTTCTCAATCCCTTGCATAA+TGG | 0.387201 | 1.4:-18948099 | None:intergenic |
| AAAAGCCTTTACCTGACTTC+AGG | 0.392539 | 1.4:+18949551 | MS.gene061072:CDS |
| CAATGGTACCAATGGTTTCC+CGG | 0.394514 | 1.4:-18949495 | None:intergenic |
| TTGAAGAATTCAGCAGGACT+TGG | 0.411110 | 1.4:-18948036 | None:intergenic |
| CTATTTATTTACCTGAAGTC+AGG | 0.416707 | 1.4:-18949562 | None:intergenic |
| TAGCAAAGAGAACCTCTCTA+AGG | 0.419095 | 1.4:-18950422 | None:intergenic |
| AGTTTATTAGTACTACCTTT+CGG | 0.448862 | 1.4:-18948186 | None:intergenic |
| AACCTCTCTAAGGATTGAAT+TGG | 0.466396 | 1.4:-18950412 | None:intergenic |
| ATATCACTGATAGTGTTATC+GGG | 0.469841 | 1.4:+18949743 | MS.gene061072:CDS |
| TTATGGATATGTGACAAAGT+TGG | 0.480266 | 1.4:+18947497 | MS.gene061072:CDS |
| AGATGCAATTCAAGGACAAA+TGG | 0.485222 | 1.4:+18948262 | MS.gene061072:CDS |
| CAGAGCGATTCCGGTGAAGT+TGG | 0.485427 | 1.4:-18948220 | None:intergenic |
| TGCATTATAGAAAGCCTCAA+TGG | 0.493820 | 1.4:-18949512 | None:intergenic |
| CTCTCTGCTGCCAACTTCAC+CGG | 0.496535 | 1.4:+18948210 | MS.gene061072:CDS |
| ATTTACCTGAAGTCAGGTAA+AGG | 0.508374 | 1.4:-18949556 | None:intergenic |
| GGATTGAGAAGAGATAAAAC+AGG | 0.513077 | 1.4:+18948111 | MS.gene061072:CDS |
| CTGCACGGAGATGCAATTCA+AGG | 0.515651 | 1.4:+18948254 | MS.gene061072:CDS |
| CTTACATATATGATGGCTAC+CGG | 0.522849 | 1.4:+18949476 | MS.gene061072:CDS |
| GGTTCTCTTTGCTATTCAGA+AGG | 0.526000 | 1.4:+18950431 | MS.gene061072:CDS |
| AATCCCTTGCATAATGGTGT+TGG | 0.527663 | 1.4:-18948093 | None:intergenic |
| GATTCATTGAAGAATTCAGC+AGG | 0.529369 | 1.4:-18948042 | None:intergenic |
| TGGATTGCGTGTCTTTCTCT+CGG | 0.534179 | 1.4:+18948282 | MS.gene061072:CDS |
| GTGTAAGCTTACATATATGA+TGG | 0.548876 | 1.4:+18949469 | MS.gene061072:CDS |
| TCTGTTCGCCCTCCTCTGCA+CGG | 0.553822 | 1.4:+18948239 | MS.gene061072:CDS |
| GCTTTCTATAATGCAAATCT+CGG | 0.554882 | 1.4:+18949520 | MS.gene061072:CDS |
| TTCTCCAACACCATTATGCA+AGG | 0.555393 | 1.4:+18948089 | MS.gene061072:CDS |
| CTTCCAGGAGAAAATGCACC+TGG | 0.557252 | 1.4:-18950459 | None:intergenic |
| GTTCTCTTTGCTATTCAGAA+GGG | 0.558787 | 1.4:+18950432 | MS.gene061072:CDS |
| GATGGCTACCGGGAAACCAT+TGG | 0.566422 | 1.4:+18949487 | MS.gene061072:CDS |
| TTGCATCTCCGTGCAGAGGA+GGG | 0.567818 | 1.4:-18948247 | None:intergenic |
| GAAAGCCTCAATGGTACCAA+TGG | 0.569411 | 1.4:-18949503 | None:intergenic |
| GGCCAATTCAATCCTTAGAG+AGG | 0.570620 | 1.4:+18950410 | MS.gene061072:CDS |
| ACTGATAGTGTTATCGGGGA+AGG | 0.575346 | 1.4:+18949748 | MS.gene061072:CDS |
| ATTGCATCTCCGTGCAGAGG+AGG | 0.577540 | 1.4:-18948248 | None:intergenic |
| ACTGTTGGGATGATTTGGTA+CGG | 0.586863 | 1.4:-18948317 | None:intergenic |
| ATTAGTACTACCTTTCGGAA+CGG | 0.594830 | 1.4:-18948181 | None:intergenic |
| GCTATTCAGAAGGGAAAACC+AGG | 0.602778 | 1.4:+18950441 | MS.gene061072:CDS |
| GCATCAAGCATCTTCGACGG+AGG | 0.614412 | 1.4:-18949718 | None:intergenic |
| GGAAACCATTGGTACCATTG+AGG | 0.615337 | 1.4:+18949498 | MS.gene061072:CDS |
| TCTCCAACACCATTATGCAA+GGG | 0.622342 | 1.4:+18948090 | MS.gene061072:CDS |
| TTACATATATGATGGCTACC+GGG | 0.624967 | 1.4:+18949477 | MS.gene061072:CDS |
| TGAATTGCATCTCCGTGCAG+AGG | 0.632307 | 1.4:-18948251 | None:intergenic |
| TCAGCATCAAGCATCTTCGA+CGG | 0.650613 | 1.4:-18949721 | None:intergenic |
| AGGATATACTCCGTTCCGAA+AGG | 0.655100 | 1.4:+18948171 | MS.gene061072:CDS |
| TATCACTGATAGTGTTATCG+GGG | 0.674328 | 1.4:+18949744 | MS.gene061072:CDS |
| TTCGACGGAGGCAAATATCG+TGG | 0.683318 | 1.4:-18949706 | None:intergenic |
| GATTGAGAAGAGATAAAACA+GGG | 0.693699 | 1.4:+18948112 | MS.gene061072:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAATAAATTATA+GGG | + | chr1.4:18948879-18948898 | MS.gene061072:intron | 0.0% |
| !! | TATAAAAAAAAATAAATTAT+AGG | + | chr1.4:18948878-18948897 | MS.gene061072:intron | 0.0% |
| !! | AAAGTTTAATTCAAAAAAAA+GGG | + | chr1.4:18947646-18947665 | MS.gene061072:intron | 10.0% |
| !! | AAATAAGAAATAATTAAAGA+TGG | - | chr1.4:18947920-18947939 | None:intergenic | 10.0% |
| !! | ATATTTACATATCTAAAAAT+TGG | + | chr1.4:18950344-18950363 | MS.gene061072:intron | 10.0% |
| !!! | TTTTAGATATGTAAATATAA+TGG | - | chr1.4:18950342-18950361 | None:intergenic | 10.0% |
| !! | ATATTCTTCAAAAAAGATTA+CGG | - | chr1.4:18947769-18947788 | None:intergenic | 15.0% |
| !! | CAAAGTTTAATTCAAAAAAA+AGG | + | chr1.4:18947645-18947664 | MS.gene061072:intron | 15.0% |
| !! | GATTTAATCATAGATAATAA+TGG | - | chr1.4:18947580-18947599 | None:intergenic | 15.0% |
| !!! | TAATTTTGTGAAAAATTCAT+AGG | + | chr1.4:18949447-18949466 | MS.gene061072:intron | 15.0% |
| !!! | TCATTTTTTAAGCAATTTTA+TGG | + | chr1.4:18947480-18947499 | MS.gene061072:intron | 15.0% |
| !!! | TGAAGAATATTTTTTCTTTT+TGG | + | chr1.4:18947779-18947798 | MS.gene061072:intron | 15.0% |
| !!! | TTGATTTTGTTTTATTTATC+TGG | + | chr1.4:18948138-18948157 | MS.gene061072:CDS | 15.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | + | chr1.4:18949839-18949858 | MS.gene061072:intron | 20.0% |
| !! | ATGACAATATGATGATTATA+TGG | - | chr1.4:18949596-18949615 | None:intergenic | 20.0% |
| !! | CATATCTAAAAATTGGTATT+TGG | + | chr1.4:18950351-18950370 | MS.gene061072:intron | 20.0% |
| !! | GAATTCACAACTTAAATAAA+AGG | - | chr1.4:18948067-18948086 | None:intergenic | 20.0% |
| !! | TAAGGTTATAATGTCTATTT+CGG | + | chr1.4:18947804-18947823 | MS.gene061072:intron | 20.0% |
| !! | TACATGAAAAACTTGATAAA+TGG | + | chr1.4:18950004-18950023 | MS.gene061072:intron | 20.0% |
| !! | TGTAGCTAATTATATTTAAC+TGG | + | chr1.4:18947407-18947426 | MS.gene061072:intron | 20.0% |
| !! | TTGAAACAATATATAGATTG+TGG | + | chr1.4:18949286-18949305 | MS.gene061072:intron | 20.0% |
| !! | TTTCAATCTAATGAATTTAG+TGG | - | chr1.4:18949272-18949291 | None:intergenic | 20.0% |
| !!! | AATTCCAATATTGAAGTTTT+TGG | + | chr1.4:18947700-18947719 | MS.gene061072:intron | 20.0% |
| !!! | ATTCCAATATTGAAGTTTTT+GGG | + | chr1.4:18947701-18947720 | MS.gene061072:intron | 20.0% |
| !!! | ATTTATCTGGATTTTTTTGT+AGG | + | chr1.4:18948151-18948170 | MS.gene061072:CDS | 20.0% |
| !!! | CAAATGTGTGTTTTATATTA+AGG | + | chr1.4:18947999-18948018 | MS.gene061072:intron | 20.0% |
| !!! | TAAGTAAGCTCTAATATTTT+AGG | - | chr1.4:18948860-18948879 | None:intergenic | 20.0% |
| !!! | TATTTTTTCTTTTTGGCTTA+AGG | + | chr1.4:18947786-18947805 | MS.gene061072:intron | 20.0% |
| !!! | TTTACAACTCATGTTTTTTT+GGG | + | chr1.4:18947973-18947992 | MS.gene061072:intron | 20.0% |
| !!! | TTTTACAACTCATGTTTTTT+TGG | + | chr1.4:18947972-18947991 | MS.gene061072:intron | 20.0% |
| ! | AAACCCAAAAACTTCAATAT+TGG | - | chr1.4:18947707-18947726 | None:intergenic | 25.0% |
| ! | AATTGGATGGAAACAATATA+TGG | + | chr1.4:18949321-18949340 | MS.gene061072:intron | 25.0% |
| ! | ACTTTCATAGCTTAAATATC+AGG | + | chr1.4:18949416-18949435 | MS.gene061072:intron | 25.0% |
| ! | AGAAAATGAGAGAAAGTAAA+AGG | - | chr1.4:18948395-18948414 | None:intergenic | 25.0% |
| ! | AGTTTATTAGTACTACCTTT+CGG | - | chr1.4:18948189-18948208 | None:intergenic | 25.0% |
| ! | ATAATAGATTAAGGCTCATA+TGG | - | chr1.4:18950147-18950166 | None:intergenic | 25.0% |
| ! | ATCTTAACATACATTATGCT+AGG | - | chr1.4:18949193-18949212 | None:intergenic | 25.0% |
| ! | ATTAAGGCTTAGTTTCATTA+AGG | + | chr1.4:18947530-18947549 | MS.gene061072:CDS | 25.0% |
| ! | CAATGCAGTATAATAGATTA+AGG | - | chr1.4:18950156-18950175 | None:intergenic | 25.0% |
| ! | CTTAATCTATTATACTGCAT+TGG | + | chr1.4:18950154-18950173 | MS.gene061072:intron | 25.0% |
| ! | TCTTTATAAATGCGCTTAAA+GGG | - | chr1.4:18950065-18950084 | None:intergenic | 25.0% |
| ! | TTTATAATACTTGATTCCTG+TGG | + | chr1.4:18950027-18950046 | MS.gene061072:intron | 25.0% |
| !! | AAAAAAAGGGATTGATTCAT+AGG | + | chr1.4:18947659-18947678 | MS.gene061072:intron | 25.0% |
| !! | AAACAATATATGGATTGTTG+TGG | + | chr1.4:18949331-18949350 | MS.gene061072:intron | 25.0% |
| !! | AATTTTATTCGAGACATTGT+TGG | - | chr1.4:18948782-18948801 | None:intergenic | 25.0% |
| !! | AGTAAAGATTGATGATTAAG+AGG | + | chr1.4:18948590-18948609 | MS.gene061072:intron | 25.0% |
| !! | GTAAAGATTGATGATTAAGA+GGG | + | chr1.4:18948591-18948610 | MS.gene061072:intron | 25.0% |
| !! | TTATAGGGAATATTTTGTCT+TGG | + | chr1.4:18948894-18948913 | MS.gene061072:intron | 25.0% |
| !!! | AAATAGTTCTGGTAGTATTA+TGG | + | chr1.4:18948655-18948674 | MS.gene061072:intron | 25.0% |
| !!! | CATTTTTTAGTAGATACCTA+AGG | - | chr1.4:18948548-18948567 | None:intergenic | 25.0% |
| !!! | CTAACTTTTAAAGACCAAAA+AGG | - | chr1.4:18950221-18950240 | None:intergenic | 25.0% |
| !!! | GTATCTGTGAAATTTTGTTT+AGG | + | chr1.4:18948613-18948632 | MS.gene061072:intron | 25.0% |
| !!! | TAACTTTTTCTTACCTCTTT+GGG | + | chr1.4:18950113-18950132 | MS.gene061072:intron | 25.0% |
| AAAATGCTCCAATTGACATA+TGG | + | chr1.4:18948562-18948581 | MS.gene061072:intron | 30.0% | |
| AGGTAAGAAAAAGTTAGATG+AGG | - | chr1.4:18950109-18950128 | None:intergenic | 30.0% | |
| AGTTGGACTATATGACATTA+AGG | + | chr1.4:18947514-18947533 | MS.gene061072:CDS | 30.0% | |
| ATGTGTGACATAAATAGTTC+TGG | + | chr1.4:18948644-18948663 | MS.gene061072:intron | 30.0% | |
| ATGTTTGATTGAATGACTCA+TGG | + | chr1.4:18947943-18947962 | MS.gene061072:intron | 30.0% | |
| ATTATACAGGTCAATCCAAT+AGG | - | chr1.4:18949385-18949404 | None:intergenic | 30.0% | |
| ATTTCTCCAACTCATGAAAA+AGG | - | chr1.4:18947832-18947851 | None:intergenic | 30.0% | |
| CTATTTATTTACCTGAAGTC+AGG | - | chr1.4:18949565-18949584 | None:intergenic | 30.0% | |
| CTGACTTCAGGTAAATAAAT+AGG | + | chr1.4:18949563-18949582 | MS.gene061072:intron | 30.0% | |
| GATAAATATGTGCATCCTAT+TGG | + | chr1.4:18949367-18949386 | MS.gene061072:intron | 30.0% | |
| GATGAATTGAACTAACTGTT+GGG | - | chr1.4:18948334-18948353 | None:intergenic | 30.0% | |
| GATTGAGAAGAGATAAAACA+GGG | + | chr1.4:18948112-18948131 | MS.gene061072:CDS | 30.0% | |
| GCTTTCTATAATGCAAATCT+CGG | + | chr1.4:18949520-18949539 | MS.gene061072:CDS | 30.0% | |
| GTCTTTATAAATGCGCTTAA+AGG | - | chr1.4:18950066-18950085 | None:intergenic | 30.0% | |
| GTGAAGAATGTAAAATTGGA+TGG | + | chr1.4:18949308-18949327 | MS.gene061072:intron | 30.0% | |
| GTGTAAGCTTACATATATGA+TGG | + | chr1.4:18949469-18949488 | MS.gene061072:CDS | 30.0% | |
| GTTCCATAACAAGATTATAC+AGG | - | chr1.4:18949398-18949417 | None:intergenic | 30.0% | |
| TAACAGTACATGTATGTGAA+AGG | - | chr1.4:18950258-18950277 | None:intergenic | 30.0% | |
| TAAGTATCTAACTCAACCTT+AGG | + | chr1.4:18948529-18948548 | MS.gene061072:intron | 30.0% | |
| TCTGTATTAGACTCATTGTA+GGG | + | chr1.4:18947619-18947638 | MS.gene061072:intron | 30.0% | |
| TGACCTGTATAATCTTGTTA+TGG | + | chr1.4:18949392-18949411 | MS.gene061072:intron | 30.0% | |
| TGATGAATTGAACTAACTGT+TGG | - | chr1.4:18948335-18948354 | None:intergenic | 30.0% | |
| TGTGGTGAAGAATGTAAAAT+TGG | + | chr1.4:18949304-18949323 | MS.gene061072:intron | 30.0% | |
| TTAAAGACCAAAAAGGACTA+AGG | - | chr1.4:18950214-18950233 | None:intergenic | 30.0% | |
| TTATGGATATGTGACAAAGT+TGG | + | chr1.4:18947497-18947516 | MS.gene061072:CDS | 30.0% | |
| TTCTGGTAGTATTATGGTAT+TGG | + | chr1.4:18948661-18948680 | MS.gene061072:intron | 30.0% | |
| TTGAATGCTGAACTTTGAAT+AGG | - | chr1.4:18948837-18948856 | None:intergenic | 30.0% | |
| TTTCTCCAACTCATGAAAAA+GGG | - | chr1.4:18947831-18947850 | None:intergenic | 30.0% | |
| ! | ATATCACTGATAGTGTTATC+GGG | + | chr1.4:18949743-18949762 | MS.gene061072:CDS | 30.0% |
| ! | ATGGAAGATTTTGCAATTCT+AGG | - | chr1.4:18949899-18949918 | None:intergenic | 30.0% |
| ! | GATATCACTGATAGTGTTAT+CGG | + | chr1.4:18949742-18949761 | MS.gene061072:CDS | 30.0% |
| !! | ACAAAGTAGTTTGTTGTATG+TGG | + | chr1.4:18947434-18947453 | MS.gene061072:intron | 30.0% |
| !! | ATTATACTGCATTGGTTTCT+TGG | + | chr1.4:18950162-18950181 | MS.gene061072:intron | 30.0% |
| !! | CTAACTTTTTCTTACCTCTT+TGG | + | chr1.4:18950112-18950131 | MS.gene061072:intron | 30.0% |
| AAAATCTTCCATTCAGTGGT+TGG | + | chr1.4:18949907-18949926 | MS.gene061072:intron | 35.0% | |
| AAATCTTCCATTCAGTGGTT+GGG | + | chr1.4:18949908-18949927 | MS.gene061072:intron | 35.0% | |
| AACTAACTGTTGGGATGATT+TGG | - | chr1.4:18948325-18948344 | None:intergenic | 35.0% | |
| AATGTAGCCAAAATCCAACA+TGG | + | chr1.4:18948709-18948728 | MS.gene061072:intron | 35.0% | |
| ACATACATGTACTGTTAGCT+AGG | + | chr1.4:18950261-18950280 | MS.gene061072:intron | 35.0% | |
| ACTGTTAGCTAGGTCATTTA+TGG | + | chr1.4:18950271-18950290 | MS.gene061072:intron | 35.0% | |
| AGATGCAATTCAAGGACAAA+TGG | + | chr1.4:18948262-18948281 | MS.gene061072:CDS | 35.0% | |
| AGCTTAAATATCAGGATCTG+AGG | + | chr1.4:18949424-18949443 | MS.gene061072:intron | 35.0% | |
| ATACTTGATTCCTGTGGATT+TGG | + | chr1.4:18950033-18950052 | MS.gene061072:intron | 35.0% | |
| ATCCAAACAACATCTTGAAC+AGG | - | chr1.4:18947874-18947893 | None:intergenic | 35.0% | |
| ATTAGTACTACCTTTCGGAA+CGG | - | chr1.4:18948184-18948203 | None:intergenic | 35.0% | |
| ATTTACCTGAAGTCAGGTAA+AGG | - | chr1.4:18949559-18949578 | None:intergenic | 35.0% | |
| CTCTGTATTAGACTCATTGT+AGG | + | chr1.4:18947618-18947637 | MS.gene061072:intron | 35.0% | |
| CTTACATATATGATGGCTAC+CGG | + | chr1.4:18949476-18949495 | MS.gene061072:CDS | 35.0% | |
| GAATAGGCAAATAGAGAAAC+TGG | - | chr1.4:18948821-18948840 | None:intergenic | 35.0% | |
| GATTCATTGAAGAATTCAGC+AGG | - | chr1.4:18948045-18948064 | None:intergenic | 35.0% | |
| GCAGAACAGATAAACTGATT+TGG | + | chr1.4:18948436-18948455 | MS.gene061072:intron | 35.0% | |
| GGATTGAGAAGAGATAAAAC+AGG | + | chr1.4:18948111-18948130 | MS.gene061072:CDS | 35.0% | |
| TCCAAACAACATCTTGAACA+GGG | - | chr1.4:18947873-18947892 | None:intergenic | 35.0% | |
| TGCATTATAGAAAGCCTCAA+TGG | - | chr1.4:18949515-18949534 | None:intergenic | 35.0% | |
| TTACATATATGATGGCTACC+GGG | + | chr1.4:18949477-18949496 | MS.gene061072:CDS | 35.0% | |
| TTGCAAAATCTTCCATTCAG+TGG | + | chr1.4:18949903-18949922 | MS.gene061072:intron | 35.0% | |
| ! | AACCTCTCTAAGGATTGAAT+TGG | - | chr1.4:18950415-18950434 | None:intergenic | 35.0% |
| ! | GTTTGGATTCATCAGCTTTT+GGG | + | chr1.4:18947886-18947905 | MS.gene061072:intron | 35.0% |
| ! | TATCACTGATAGTGTTATCG+GGG | + | chr1.4:18949744-18949763 | MS.gene061072:CDS | 35.0% |
| ! | TGTTTGGATTCATCAGCTTT+TGG | + | chr1.4:18947885-18947904 | MS.gene061072:intron | 35.0% |
| ! | TTTACACGTCTTTGACTTCT+TGG | + | chr1.4:18950389-18950408 | MS.gene061072:CDS | 35.0% |
| ! | TTTCTTACCTCTTTGGGTTT+AGG | + | chr1.4:18950119-18950138 | MS.gene061072:intron | 35.0% |
| !! | AAGTCTCTAAAACTGCAACA+TGG | - | chr1.4:18949227-18949246 | None:intergenic | 35.0% |
| !! | GTATTTGGTGCAGAAAATTC+AGG | + | chr1.4:18950366-18950385 | MS.gene061072:intron | 35.0% |
| !! | GTTCTCTTTGCTATTCAGAA+GGG | + | chr1.4:18950432-18950451 | MS.gene061072:CDS | 35.0% |
| !! | TAGTTTGCCATGTTGGATTT+TGG | - | chr1.4:18948719-18948738 | None:intergenic | 35.0% |
| AAAAGCCTTTACCTGACTTC+AGG | + | chr1.4:18949551-18949570 | MS.gene061072:CDS | 40.0% | |
| AAAAGGACTAAGGATTGCCT+CGG | - | chr1.4:18950204-18950223 | None:intergenic | 40.0% | |
| AATCCCTTGCATAATGGTGT+TGG | - | chr1.4:18948096-18948115 | None:intergenic | 40.0% | |
| ACGCAGCAAAACAAACATTG+AGG | - | chr1.4:18949093-18949112 | None:intergenic | 40.0% | |
| ACTCTGCTCCATATGTCAAT+TGG | - | chr1.4:18948573-18948592 | None:intergenic | 40.0% | |
| CAGCAAAACAAACATTGAGG+TGG | - | chr1.4:18949090-18949109 | None:intergenic | 40.0% | |
| CAGTACATGTATGTGAAAGG+TGG | - | chr1.4:18950255-18950274 | None:intergenic | 40.0% | |
| CCAAACAACATCTTGAACAG+GGG | - | chr1.4:18947872-18947891 | None:intergenic | 40.0% | |
| CGAGGCTGATATCAATGTTA+TGG | + | chr1.4:18948998-18949017 | MS.gene061072:intron | 40.0% | |
| CTTCTCAATCCCTTGCATAA+TGG | - | chr1.4:18948102-18948121 | None:intergenic | 40.0% | |
| GAGTTCATGAGCTGAAAGAA+AGG | + | chr1.4:18949978-18949997 | MS.gene061072:intron | 40.0% | |
| GTCATTTATGGTCATGCTTG+TGG | + | chr1.4:18950283-18950302 | MS.gene061072:intron | 40.0% | |
| TAGCAAAGAGAACCTCTCTA+AGG | - | chr1.4:18950425-18950444 | None:intergenic | 40.0% | |
| TATCGTGGTTGAGTGTAAAC+TGG | - | chr1.4:18949694-18949713 | None:intergenic | 40.0% | |
| TATGGATCCTAAACCCAAAG+AGG | - | chr1.4:18950129-18950148 | None:intergenic | 40.0% | |
| TCTCCAACACCATTATGCAA+GGG | + | chr1.4:18948090-18948109 | MS.gene061072:CDS | 40.0% | |
| TGATTTCTCCCTTCAAATCG+AGG | + | chr1.4:18948980-18948999 | MS.gene061072:intron | 40.0% | |
| TTCTCCAACACCATTATGCA+AGG | + | chr1.4:18948089-18948108 | MS.gene061072:CDS | 40.0% | |
| TTGAAGAATTCAGCAGGACT+TGG | - | chr1.4:18948039-18948058 | None:intergenic | 40.0% | |
| ! | AGGCAATCCTTAGTCCTTTT+TGG | + | chr1.4:18950204-18950223 | MS.gene061072:intron | 40.0% |
| ! | GAAGTCAGGTAAAGGCTTTT+TGG | - | chr1.4:18949551-18949570 | None:intergenic | 40.0% |
| ! | GATATCAGCCTCGATTTGAA+GGG | - | chr1.4:18948991-18949010 | None:intergenic | 40.0% |
| ! | GGGAATATTTTGTCTTGGCT+TGG | + | chr1.4:18948899-18948918 | MS.gene061072:intron | 40.0% |
| ! | TGATATCAGCCTCGATTTGA+AGG | - | chr1.4:18948992-18949011 | None:intergenic | 40.0% |
| !! | ACTGTTGGGATGATTTGGTA+CGG | - | chr1.4:18948320-18948339 | None:intergenic | 40.0% |
| !! | CGAACTTTAGTTTGCCATGT+TGG | - | chr1.4:18948726-18948745 | None:intergenic | 40.0% |
| !! | GGTTCTCTTTGCTATTCAGA+AGG | + | chr1.4:18950431-18950450 | MS.gene061072:CDS | 40.0% |
| AGGATATACTCCGTTCCGAA+AGG | + | chr1.4:18948171-18948190 | MS.gene061072:CDS | 45.0% | |
| AGGGACTTTACCAAATCCAC+AGG | - | chr1.4:18950046-18950065 | None:intergenic | 45.0% | |
| CAATGGTACCAATGGTTTCC+CGG | - | chr1.4:18949498-18949517 | None:intergenic | 45.0% | |
| CCCCTGTTCAAGATGTTGTT+TGG | + | chr1.4:18947869-18947888 | MS.gene061072:intron | 45.0% | |
| GAAAGCCTCAATGGTACCAA+TGG | - | chr1.4:18949506-18949525 | None:intergenic | 45.0% | |
| GCTATTCAGAAGGGAAAACC+AGG | + | chr1.4:18950441-18950460 | MS.gene061072:CDS | 45.0% | |
| GGAAACCATTGGTACCATTG+AGG | + | chr1.4:18949498-18949517 | MS.gene061072:CDS | 45.0% | |
| GGCCAATTCAATCCTTAGAG+AGG | + | chr1.4:18950410-18950429 | MS.gene061072:CDS | 45.0% | |
| TCAGCATCAAGCATCTTCGA+CGG | - | chr1.4:18949724-18949743 | None:intergenic | 45.0% | |
| TCGTGAAAACTCTCAGCTTC+AGG | + | chr1.4:18948498-18948517 | MS.gene061072:intron | 45.0% | |
| TGGATTGCGTGTCTTTCTCT+CGG | + | chr1.4:18948282-18948301 | MS.gene061072:CDS | 45.0% | |
| ! | AAACCAGGTGCATTTTCTCC+TGG | + | chr1.4:18950456-18950475 | MS.gene061072:CDS | 45.0% |
| ! | ACTGATAGTGTTATCGGGGA+AGG | + | chr1.4:18949748-18949767 | MS.gene061072:CDS | 45.0% |
| ! | CATCTTGGTCATGGTGTCAA+TGG | + | chr1.4:18949636-18949655 | MS.gene061072:intron | 45.0% |
| !! | CTATGAGAGCATCTTGGTCA+TGG | + | chr1.4:18949627-18949646 | MS.gene061072:intron | 45.0% |
| !! | TCGGACCCTTTTTCATGAGT+TGG | + | chr1.4:18947823-18947842 | MS.gene061072:intron | 45.0% |
| !! | TGCACTCTATGAGAGCATCT+TGG | + | chr1.4:18949621-18949640 | MS.gene061072:intron | 45.0% |
| CTGCACGGAGATGCAATTCA+AGG | + | chr1.4:18948254-18948273 | MS.gene061072:CDS | 50.0% | |
| CTTCCAGGAGAAAATGCACC+TGG | - | chr1.4:18950462-18950481 | None:intergenic | 50.0% | |
| GATCATGTCAGTACTTGCCG+AGG | + | chr1.4:18950184-18950203 | MS.gene061072:intron | 50.0% | |
| TGAATTGCATCTCCGTGCAG+AGG | - | chr1.4:18948254-18948273 | None:intergenic | 50.0% | |
| TTCGACGGAGGCAAATATCG+TGG | - | chr1.4:18949709-18949728 | None:intergenic | 50.0% | |
| ATTGCATCTCCGTGCAGAGG+AGG | - | chr1.4:18948251-18948270 | None:intergenic | 55.0% | |
| CAGAGCGATTCCGGTGAAGT+TGG | - | chr1.4:18948223-18948242 | None:intergenic | 55.0% | |
| CGGGGAAGGATGTGCGATTA+AGG | + | chr1.4:18949762-18949781 | MS.gene061072:CDS | 55.0% | |
| CTCTCTGCTGCCAACTTCAC+CGG | + | chr1.4:18948210-18948229 | MS.gene061072:CDS | 55.0% | |
| GATGGCTACCGGGAAACCAT+TGG | + | chr1.4:18949487-18949506 | MS.gene061072:CDS | 55.0% | |
| GCATCAAGCATCTTCGACGG+AGG | - | chr1.4:18949721-18949740 | None:intergenic | 55.0% | |
| TCCATTCAGTGGTTGGGCTG+CGG | + | chr1.4:18949914-18949933 | MS.gene061072:intron | 55.0% | |
| TTGCATCTCCGTGCAGAGGA+GGG | - | chr1.4:18948250-18948269 | None:intergenic | 55.0% | |
| ACCGCAGCCCAACCACTGAA+TGG | - | chr1.4:18949918-18949937 | None:intergenic | 60.0% | |
| GAGGGCGAACAGAGCGATTC+CGG | - | chr1.4:18948232-18948251 | None:intergenic | 60.0% | |
| TCTGTTCGCCCTCCTCTGCA+CGG | + | chr1.4:18948239-18948258 | MS.gene061072:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 18947381 | 18950495 | 18947381 | ID=MS.gene061072 |
| chr1.4 | mRNA | 18947381 | 18950495 | 18947381 | ID=MS.gene061072.t1;Parent=MS.gene061072 |
| chr1.4 | exon | 18947381 | 18947392 | 18947381 | ID=MS.gene061072.t1.exon1;Parent=MS.gene061072.t1 |
| chr1.4 | CDS | 18947381 | 18947392 | 18947381 | ID=cds.MS.gene061072.t1;Parent=MS.gene061072.t1 |
| chr1.4 | exon | 18947492 | 18947551 | 18947492 | ID=MS.gene061072.t1.exon2;Parent=MS.gene061072.t1 |
| chr1.4 | CDS | 18947492 | 18947551 | 18947492 | ID=cds.MS.gene061072.t1;Parent=MS.gene061072.t1 |
| chr1.4 | exon | 18948021 | 18948337 | 18948021 | ID=MS.gene061072.t1.exon3;Parent=MS.gene061072.t1 |
| chr1.4 | CDS | 18948021 | 18948337 | 18948021 | ID=cds.MS.gene061072.t1;Parent=MS.gene061072.t1 |
| chr1.4 | exon | 18949469 | 18949572 | 18949469 | ID=MS.gene061072.t1.exon4;Parent=MS.gene061072.t1 |
| chr1.4 | CDS | 18949469 | 18949572 | 18949469 | ID=cds.MS.gene061072.t1;Parent=MS.gene061072.t1 |
| chr1.4 | exon | 18949695 | 18949783 | 18949695 | ID=MS.gene061072.t1.exon5;Parent=MS.gene061072.t1 |
| chr1.4 | CDS | 18949695 | 18949783 | 18949695 | ID=cds.MS.gene061072.t1;Parent=MS.gene061072.t1 |
| chr1.4 | exon | 18950379 | 18950495 | 18950379 | ID=MS.gene061072.t1.exon6;Parent=MS.gene061072.t1 |
| chr1.4 | CDS | 18950379 | 18950495 | 18950379 | ID=cds.MS.gene061072.t1;Parent=MS.gene061072.t1 |
| Gene Sequence |
| Protein sequence |
