AlfalfaGEDB | MS.gene82962

M. sativa cultivar XinJiangDaYe / MS.gene82962

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82962.t1	AYO46925.1	86	392	55	0	1	392	1	392	1.20E-176	629.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82962.t1	A9XMT3	55.3	409	161	8	1	391	79	483	1.6e-100	367.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82962.t1	A0A3G2SGQ0	86.0	392	55	0	1	392	1	392	8.7e-177	629.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene82962	0.818436	1.96E-52	-1.69E-46
MS.gene049531	MS.gene82962	0.821998	3.00E-53	-1.69E-46
MS.gene049701	MS.gene82962	0.822581	2.19E-53	-1.69E-46
MS.gene049853	MS.gene82962	0.800352	1.50E-48	-1.69E-46
MS.gene050221	MS.gene82962	0.803631	3.18E-49	-1.69E-46
MS.gene050430	MS.gene82962	0.803504	3.38E-49	-1.69E-46
MS.gene050611	MS.gene82962	0.816175	6.33E-52	-1.69E-46
MS.gene051190	MS.gene82962	0.802517	5.40E-49	-1.69E-46
MS.gene051279	MS.gene82962	0.812501	4.11E-51	-1.69E-46
MS.gene051594	MS.gene82962	0.822157	2.75E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82962.t1	MTR_5g026850	58.613	447	157	10	1	426	80	519	8.57e-161	463
MS.gene82962.t1	MTR_5g026850	59.410	441	157	9	1	426	80	513	1.49e-155	450

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 68 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGTCTGTAATATCCG+AGG	0.579761	8.1:+33544779	MS.gene82962:CDS
AAGATAGCTTGCATATCAGG+GGG	0.672728	8.1:-33546760	None:intergenic
AATAGAATCTGTTCACATGT+TGG	0.551048	8.1:+33545415	MS.gene82962:CDS
AATATGTCTGTAATATCCGA+GGG	0.656938	8.1:+33544780	MS.gene82962:CDS
AATTAATTATGCAGAGGACA+AGG	0.597887	8.1:+33546408	MS.gene82962:intron
AATTATGCAAGACGATCCTA+AGG	0.585758	8.1:+33544806	MS.gene82962:CDS
ACTGGTTTCGATGGATGCGA+CGG	0.631529	8.1:+33545929	MS.gene82962:CDS
AGAATCCTTCCTGTTCATGA+AGG	0.536170	8.1:-33546836	None:intergenic
AGACTCTACTATTCAAGTTA+AGG	0.423459	8.1:+33545772	MS.gene82962:CDS
AGACTCTTTGTGAAAGCTCA+TGG	0.493197	8.1:+33545969	MS.gene82962:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGTCTGTAATATCCG+AGG	+	chr8.1:33544779-33544798	MS.gene82962:CDS	30.0%
AATAGAATCTGTTCACATGT+TGG	+	chr8.1:33545415-33545434	MS.gene82962:CDS	30.0%
AATATGTCTGTAATATCCGA+GGG	+	chr8.1:33544780-33544799	MS.gene82962:CDS	30.0%
AATTAATTATGCAGAGGACA+AGG	+	chr8.1:33546408-33546427	MS.gene82962:intron	30.0%
ATCCAAGTCAATTAGGTTTA+TGG	-	chr8.1:33545828-33545847	None:intergenic	30.0%
ATCCATAAACCTAATTGACT+TGG	+	chr8.1:33545823-33545842	MS.gene82962:CDS	30.0%
CAAAATCCAATATATGTCGA+AGG	+	chr8.1:33545749-33545768	MS.gene82962:CDS	30.0%
CCAGTAAATTAATTATGCAG+AGG	+	chr8.1:33546402-33546421	MS.gene82962:intron	30.0%
CCTCTGCATAATTAATTTAC+TGG	-	chr8.1:33546405-33546424	None:intergenic	30.0%
GTGAAATCACAACAAAGATA+TGG	-	chr8.1:33544905-33544924	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	33544744	33546972	33544744	ID=MS.gene82962
chr8.1	mRNA	33544744	33546972	33544744	ID=MS.gene82962.t1;Parent=MS.gene82962
chr8.1	exon	33544744	33544868	33544744	ID=MS.gene82962.t1.exon1;Parent=MS.gene82962.t1
chr8.1	CDS	33544744	33544868	33544744	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33544982	33545030	33544982	ID=MS.gene82962.t1.exon2;Parent=MS.gene82962.t1
chr8.1	CDS	33544982	33545030	33544982	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33545116	33545168	33545116	ID=MS.gene82962.t1.exon3;Parent=MS.gene82962.t1
chr8.1	CDS	33545116	33545168	33545116	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33545373	33546034	33545373	ID=MS.gene82962.t1.exon4;Parent=MS.gene82962.t1
chr8.1	CDS	33545373	33546034	33545373	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33546116	33546159	33546116	ID=MS.gene82962.t1.exon5;Parent=MS.gene82962.t1
chr8.1	CDS	33546116	33546159	33546116	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33546280	33546325	33546280	ID=MS.gene82962.t1.exon6;Parent=MS.gene82962.t1
chr8.1	CDS	33546280	33546325	33546280	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33546422	33546470	33546422	ID=MS.gene82962.t1.exon7;Parent=MS.gene82962.t1
chr8.1	CDS	33546422	33546470	33546422	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1
chr8.1	exon	33546720	33546972	33546720	ID=MS.gene82962.t1.exon8;Parent=MS.gene82962.t1
chr8.1	CDS	33546720	33546972	33546720	ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1

Gene Sequence

>MS.gene82962

ATGTCATCTGAACTATCTAATTTGTCCAATATGCAAAATATGTCTGTAATATCCGAGGGAAGAATTATGCAAGACGATCCTAAGGCGAATGATTATTCAACTGATTTCAATCAATTTCCTTTAGGGTAATTGTCGTAGGGTTCACAGAACCTGCTATGCCATATCTTTGTTGTGATTTCACTCATAACTAATAACTAGTTCAATGCTTATAATTTGGTTTGTCGTCAATTTTTTCCAGAGAACCTGTTGATGAAGTTCAACAATCCAGTAACTTGTTTCTTGCCAAGGTTTGCTTACATCAAACTCTTTGCTGAATCTGAAGCATTGGTTCAATAAGACTTCCATGTTGATTTGATTTCGTTATTGATGCAGGCTTGGTTTCTAAGCGATCAACGAATGACAAGAAGTCGATCCTCTGAATTGAGGTATATACAAATTCATTACACTGTCAATCAATCACAATTGTTGGATCATTTAAAATTACACTGTGATTGGTAGAGTATAAAATGTTTTACACTGACGGTGCATCAAAGTTAATCTCTTATTTATTTGCTTTACTTGTTAAGTTAAAAGTTAAAAACTATTCAAAAGAAATTTTCAACAACTTATTTGGTACTCTTTATTTGCAGGCAAAGGTATTCTCAAATCCACAATGCTCAAGTAGCACAAGGAATAGAATCTGTTCACATGTTGGCCACTCAGAATGGTGATAACAATCAACAAGAAGTTTCAAATTTAAATGGTTTTAACAACCTTAATCAAAAGGGTGCATTCACATCTCCATCAAATTCGTCTTCGTCAATGTTCAACACACATCAATTGAATGATAACACAGATAAAATCTCTTCGTATGTTAATATGCTAAAAGATACATTAGAACATAAGCGACTTAGCAGCCAAATAGCGAAACAAGGCGTGGAAGATAACTCAAATAAACTTTTTAGTCCTCAAGAAGATTATTTCCTCCAAACTAGTTTTGGTGAAGGGAATGAAAATTGGAATCATCAAAATCCAATATATGTCGAAGGAGACTCTACTATTCAAGTTAAGGATCATGAAGTCATGCAAACACTTGAAGCATCCATAAACCTAATTGACTTGGATGGTTTAGCAAATCAAACAAATCCAATATATTTGAGCTCAGCTTCTCCAAGTGAATCTTCTATTGCTGCAACATTAGTCTCTACTGGTTTCGATGGATGCGACGGTCCATGCATATCAAGCCAGACTCTTTGTGAAAGCTCATGGAATAAAGTTGGAGGAAGTACAAGTTTGGAAAATAGAGTCAGAGGTATAATATGGTTTGATTTGGTTTTAAAACAATTTGCATTTGCTATTATGAGACAAAAATTTTGTTTTTGTGGAACTACAGGTTTCGGAGAACAAAAAATTGATAATCTGAAAGATGATAGAGAGGTATAAAATAATCTTAAACATATATTTAATTAGTTTCTCTGAAATTATGGTTAGGGGTTTGAACAAGATATTTTGGCTACGTACAATTATTTTTTTATAATTTTTGTTTAAATTGTGCAGAAGAGAAGTCTAGAAAGATATGCATCTGTAACATCAGCTATTTCAGGTAGCAAGAGTAACTGTTAGTGTTCTTTATAACATATAAAAGAACTTCGATTCTTCTAATTCCATTCAATCACTAACCAGTAAATTAATTATGCAGAGGACAAGGAGAATGCCACAAAAAAACGTAGGGTGGAGCGAGCACGAAAGTATGTAATATTTACATATTTAAATATCTATTTTGTAAAAGACAATGGTCATGTGTCATGTGATGTCATTTAAACGACGATGGAGGCGAGTGGAATTTCTCCTACAATGAGTATATCTCATATAAGCATATTTTACTAGATGCAAATAATTTATCCTTTTTCTTATAGTTAAGATTTATACAATGCTTCCTTAAAAAAAAGATTTATACAATGCTAATGAAAATTTAAAGCCTAATATTTGTAATGCAGAATGGCTGAGGCAAAGGAAAGGAATTCGATACCATCCATTCCCCCTGATATGCAAGCTATCTTGAAGCGATGCGAAGACCTTGAGAAGGAAGTTCGATCATTAAAGCTTAATTTGTCCTTCATGAACAGGAAGGATTCTGAACAAACAAAGCAGATAGAGGACCTTCATAAGCAAAATGAGGATTTGATTGATGAAAAGGAACGCCTTCTGGAAGAGATTGAAACAATAGTATCAAAAAATGAAAAACTCTAA

Protein sequence

>MS.gene82962.t1

MSSELSNLSNMQNMSVISEGRIMQDDPKANDYSTDFNQFPLGEPVDEVQQSSNLFLAKAWFLSDQRMTRSRSSELRQRYSQIHNAQVAQGIESVHMLATQNGDNNQQEVSNLNGFNNLNQKGAFTSPSNSSSSMFNTHQLNDNTDKISSYVNMLKDTLEHKRLSSQIAKQGVEDNSNKLFSPQEDYFLQTSFGEGNENWNHQNPIYVEGDSTIQVKDHEVMQTLEASINLIDLDGLANQTNPIYLSSASPSESSIAATLVSTGFDGCDGPCISSQTLCESSWNKVGGSTSLENRVRGFGEQKIDNLKDDREKRSLERYASVTSAISEDKENATKKRRVERARKMAEAKERNSIPSIPPDMQAILKRCEDLEKEVRSLKLNLSFMNRKDSEQTKQIEDLHKQNEDLIDEKERLLEEIETIVSKNEKL