Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82962.t1 | AYO46925.1 | 86 | 392 | 55 | 0 | 1 | 392 | 1 | 392 | 1.20E-176 | 629.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82962.t1 | A9XMT3 | 55.3 | 409 | 161 | 8 | 1 | 391 | 79 | 483 | 1.6e-100 | 367.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82962.t1 | A0A3G2SGQ0 | 86.0 | 392 | 55 | 0 | 1 | 392 | 1 | 392 | 8.7e-177 | 629.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene82962 | 0.818436 | 1.96E-52 | -1.69E-46 |
| MS.gene049531 | MS.gene82962 | 0.821998 | 3.00E-53 | -1.69E-46 |
| MS.gene049701 | MS.gene82962 | 0.822581 | 2.19E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene82962 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene050221 | MS.gene82962 | 0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene050430 | MS.gene82962 | 0.803504 | 3.38E-49 | -1.69E-46 |
| MS.gene050611 | MS.gene82962 | 0.816175 | 6.33E-52 | -1.69E-46 |
| MS.gene051190 | MS.gene82962 | 0.802517 | 5.40E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene82962 | 0.812501 | 4.11E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene82962 | 0.822157 | 2.75E-53 | -1.69E-46 |
| MS.gene051710 | MS.gene82962 | 0.827832 | 1.26E-54 | -1.69E-46 |
| MS.gene052584 | MS.gene82962 | 0.810816 | 9.55E-51 | -1.69E-46 |
| MS.gene053512 | MS.gene82962 | 0.815603 | 8.49E-52 | -1.69E-46 |
| MS.gene053974 | MS.gene82962 | 0.839958 | 1.16E-57 | -1.69E-46 |
| MS.gene05423 | MS.gene82962 | 0.81373 | 2.21E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene82962 | -0.805311 | 1.42E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene82962 | 0.809327 | 2.00E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene82962 | 0.815666 | 8.22E-52 | -1.69E-46 |
| MS.gene054801 | MS.gene82962 | 0.843222 | 1.60E-58 | -1.69E-46 |
| MS.gene054991 | MS.gene82962 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene055017 | MS.gene82962 | 0.832891 | 7.30E-56 | -1.69E-46 |
| MS.gene055056 | MS.gene82962 | 0.835087 | 2.06E-56 | -1.69E-46 |
| MS.gene055058 | MS.gene82962 | 0.831823 | 1.34E-55 | -1.69E-46 |
| MS.gene05531 | MS.gene82962 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene82962 | 0.819079 | 1.40E-52 | -1.69E-46 |
| MS.gene056854 | MS.gene82962 | 0.810586 | 1.07E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene82962 | 0.800306 | 1.53E-48 | -1.69E-46 |
| MS.gene058294 | MS.gene82962 | 0.814492 | 1.50E-51 | -1.69E-46 |
| MS.gene058515 | MS.gene82962 | 0.836556 | 8.73E-57 | -1.69E-46 |
| MS.gene059015 | MS.gene82962 | 0.802948 | 4.40E-49 | -1.69E-46 |
| MS.gene059276 | MS.gene82962 | 0.863065 | 3.25E-64 | -1.69E-46 |
| MS.gene059458 | MS.gene82962 | 0.804393 | 2.21E-49 | -1.69E-46 |
| MS.gene059459 | MS.gene82962 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene82962 | 0.831887 | 1.29E-55 | -1.69E-46 |
| MS.gene060348 | MS.gene82962 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene82962 | 0.812429 | 4.26E-51 | -1.69E-46 |
| MS.gene061072 | MS.gene82962 | 0.819843 | 9.39E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82962.t1 | MTR_5g026850 | 58.613 | 447 | 157 | 10 | 1 | 426 | 80 | 519 | 8.57e-161 | 463 |
| MS.gene82962.t1 | MTR_5g026850 | 59.410 | 441 | 157 | 9 | 1 | 426 | 80 | 513 | 1.49e-155 | 450 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGCCTTGTTTCGCTATT+TGG | 0.110001 | 8.1:-33545640 | None:intergenic |
| ATCCAAGTCAATTAGGTTTA+TGG | 0.146050 | 8.1:-33545825 | None:intergenic |
| GATTTCAATCAATTTCCTTT+AGG | 0.212802 | 8.1:+33544846 | MS.gene82962:CDS |
| CAAGAAGTTTCAAATTTAAA+TGG | 0.233249 | 8.1:+33545464 | MS.gene82962:CDS |
| ATTTCAATCAATTTCCTTTA+GGG | 0.236035 | 8.1:+33544847 | MS.gene82962:CDS |
| TTCAAGATAGCTTGCATATC+AGG | 0.258847 | 8.1:-33546763 | None:intergenic |
| TGATGAAAAGGAACGCCTTC+TGG | 0.271498 | 8.1:+33546909 | MS.gene82962:CDS |
| CTAAACCATCCAAGTCAATT+AGG | 0.282523 | 8.1:-33545832 | None:intergenic |
| TATTTCCTCCAAACTAGTTT+TGG | 0.309614 | 8.1:+33545701 | MS.gene82962:CDS |
| TCCCTTCACCAAAACTAGTT+TGG | 0.310267 | 8.1:-33545709 | None:intergenic |
| TCTGTAACATCAGCTATTTC+AGG | 0.315882 | 8.1:+33546304 | MS.gene82962:CDS |
| GAGTCTCCTTCGACATATAT+TGG | 0.334178 | 8.1:-33545755 | None:intergenic |
| CTTGGCAAGAAACAAGTTAC+TGG | 0.336273 | 8.1:-33545008 | None:intergenic |
| TTGGTGAAGGGAATGAAAAT+TGG | 0.344837 | 8.1:+33545720 | MS.gene82962:CDS |
| AGTTGGAGGAAGTACAAGTT+TGG | 0.349381 | 8.1:+33545997 | MS.gene82962:CDS |
| TGAGGATTTGATTGATGAAA+AGG | 0.358635 | 8.1:+33546897 | MS.gene82962:CDS |
| GAAGCTGAGCTCAAATATAT+TGG | 0.360581 | 8.1:-33545869 | None:intergenic |
| ATTGACGAAGACGAATTTGA+TGG | 0.378481 | 8.1:-33545524 | None:intergenic |
| TTAATTTGTCCTTCATGAAC+AGG | 0.381084 | 8.1:+33546827 | MS.gene82962:CDS |
| GATTGTTGAACTTCATCAAC+AGG | 0.392977 | 8.1:-33544986 | None:intergenic |
| ATGAGCTTTCACAAAGAGTC+TGG | 0.399662 | 8.1:-33545967 | None:intergenic |
| AGACTCTACTATTCAAGTTA+AGG | 0.423459 | 8.1:+33545772 | MS.gene82962:CDS |
| GCTGCAACATTAGTCTCTAC+TGG | 0.437402 | 8.1:+33545911 | MS.gene82962:CDS |
| CTTCACCAAAACTAGTTTGG+AGG | 0.447143 | 8.1:-33545706 | None:intergenic |
| GTTGAATAATCATTCGCCTT+AGG | 0.448291 | 8.1:-33544822 | None:intergenic |
| GTCTTGCATAATTCTTCCCT+CGG | 0.451809 | 8.1:-33544796 | None:intergenic |
| CAGTAACTTGTTTCTTGCCA+AGG | 0.475543 | 8.1:+33545009 | MS.gene82962:CDS |
| GAAAGCTCATGGAATAAAGT+TGG | 0.479707 | 8.1:+33545980 | MS.gene82962:CDS |
| TTTAACAACCTTAATCAAAA+GGG | 0.492308 | 8.1:+33545488 | MS.gene82962:CDS |
| AGACTCTTTGTGAAAGCTCA+TGG | 0.493197 | 8.1:+33545969 | MS.gene82962:CDS |
| TCAAGATAGCTTGCATATCA+GGG | 0.507239 | 8.1:-33546762 | None:intergenic |
| TGAACAAACAAAGCAGATAG+AGG | 0.517837 | 8.1:+33546858 | MS.gene82962:CDS |
| ATAAACCTAATTGACTTGGA+TGG | 0.525607 | 8.1:+33545827 | MS.gene82962:CDS |
| TTAGTCTCTACTGGTTTCGA+TGG | 0.529588 | 8.1:+33545920 | MS.gene82962:CDS |
| ATGATCGAACTTCCTTCTCA+AGG | 0.535739 | 8.1:-33546798 | None:intergenic |
| AGAATCCTTCCTGTTCATGA+AGG | 0.536170 | 8.1:-33546836 | None:intergenic |
| CCCTACGACAATTACCCTAA+AGG | 0.536531 | 8.1:-33544861 | None:intergenic |
| TGGAGGAAATAATCTTCTTG+AGG | 0.545125 | 8.1:-33545689 | None:intergenic |
| AATAGAATCTGTTCACATGT+TGG | 0.551048 | 8.1:+33545415 | MS.gene82962:CDS |
| ATGCAGAATGGCTGAGGCAA+AGG | 0.552654 | 8.1:+33546714 | MS.gene82962:intron |
| TTTGTAATGCAGAATGGCTG+AGG | 0.556244 | 8.1:+33546708 | MS.gene82962:intron |
| TTGTTTCAATCTCTTCCAGA+AGG | 0.563367 | 8.1:-33546924 | None:intergenic |
| AGCTCATGGAATAAAGTTGG+AGG | 0.576429 | 8.1:+33545983 | MS.gene82962:CDS |
| AAATATGTCTGTAATATCCG+AGG | 0.579761 | 8.1:+33544779 | MS.gene82962:CDS |
| ATCCATAAACCTAATTGACT+TGG | 0.585153 | 8.1:+33545823 | MS.gene82962:CDS |
| AATTATGCAAGACGATCCTA+AGG | 0.585758 | 8.1:+33544806 | MS.gene82962:CDS |
| GGACCTTCATAAGCAAAATG+AGG | 0.588458 | 8.1:+33546879 | MS.gene82962:CDS |
| CAAAATCCAATATATGTCGA+AGG | 0.593741 | 8.1:+33545749 | MS.gene82962:CDS |
| TTTGTCCTTCATGAACAGGA+AGG | 0.596032 | 8.1:+33546831 | MS.gene82962:CDS |
| AATTAATTATGCAGAGGACA+AGG | 0.597887 | 8.1:+33546408 | MS.gene82962:intron |
| CACATGTTGGCCACTCAGAA+TGG | 0.598667 | 8.1:+33545428 | MS.gene82962:CDS |
| AGAGTCTGGCTTGATATGCA+TGG | 0.600443 | 8.1:-33545953 | None:intergenic |
| CTTGTGCTACTTGAGCATTG+TGG | 0.600889 | 8.1:-33545391 | None:intergenic |
| TAATCTGAAAGATGATAGAG+AGG | 0.600923 | 8.1:+33546138 | MS.gene82962:CDS |
| CACAATGCTCAAGTAGCACA+AGG | 0.601713 | 8.1:+33545392 | MS.gene82962:CDS |
| TTGTATATACCTCAATTCAG+AGG | 0.621214 | 8.1:-33545156 | None:intergenic |
| GAAGTCGATCCTCTGAATTG+AGG | 0.622451 | 8.1:+33545147 | MS.gene82962:CDS |
| GCGATGCGAAGACCTTGAGA+AGG | 0.628490 | 8.1:+33546786 | MS.gene82962:CDS |
| GAATGGCTGAGGCAAAGGAA+AGG | 0.630169 | 8.1:+33546719 | MS.gene82962:intron |
| ACTGGTTTCGATGGATGCGA+CGG | 0.631529 | 8.1:+33545929 | MS.gene82962:CDS |
| AGCAGCCAAATAGCGAAACA+AGG | 0.638063 | 8.1:+33545635 | MS.gene82962:CDS |
| AGTTTGGAAAATAGAGTCAG+AGG | 0.639120 | 8.1:+33546013 | MS.gene82962:CDS |
| GCAGCAATAGAAGATTCACT+TGG | 0.640418 | 8.1:-33545893 | None:intergenic |
| CAAGATAGCTTGCATATCAG+GGG | 0.645450 | 8.1:-33546761 | None:intergenic |
| CCAAATAGCGAAACAAGGCG+TGG | 0.648642 | 8.1:+33545640 | MS.gene82962:CDS |
| ATTGTTATCACCATTCTGAG+TGG | 0.655235 | 8.1:-33545438 | None:intergenic |
| AATATGTCTGTAATATCCGA+GGG | 0.656938 | 8.1:+33544780 | MS.gene82962:CDS |
| AAGATAGCTTGCATATCAGG+GGG | 0.672728 | 8.1:-33546760 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTATAAATCTTTTTTTTA+AGG | - | chr8.1:33546662-33546681 | None:intergenic | 10.0% |
| !! | AAATCTTAACTATAAGAAAA+AGG | - | chr8.1:33546628-33546647 | None:intergenic | 15.0% |
| !! | ATTTCAATCAATTTCCTTTA+GGG | + | chr8.1:33544847-33544866 | MS.gene82962:CDS | 20.0% |
| !! | CAAGAAGTTTCAAATTTAAA+TGG | + | chr8.1:33545464-33545483 | MS.gene82962:CDS | 20.0% |
| !! | TTTAACAACCTTAATCAAAA+GGG | + | chr8.1:33545488-33545507 | MS.gene82962:CDS | 20.0% |
| !!! | AATTAGTTTCTCTGAAATTA+TGG | + | chr8.1:33546187-33546206 | MS.gene82962:intron | 20.0% |
| !!! | AGACAAAAATTTTGTTTTTG+TGG | + | chr8.1:33546085-33546104 | MS.gene82962:intron | 20.0% |
| !!! | ATCTATTTTGTAAAAGACAA+TGG | + | chr8.1:33546496-33546515 | MS.gene82962:intron | 20.0% |
| !!! | ATTTAAAATTACACTGTGAT+TGG | + | chr8.1:33545216-33545235 | MS.gene82962:intron | 20.0% |
| !!! | GAAATTTTCAACAACTTATT+TGG | + | chr8.1:33545334-33545353 | MS.gene82962:intron | 20.0% |
| !!! | TATAAAATGTTTTACACTGA+CGG | + | chr8.1:33545244-33545263 | MS.gene82962:intron | 20.0% |
| !!! | TTTTAACAACCTTAATCAAA+AGG | + | chr8.1:33545487-33545506 | MS.gene82962:CDS | 20.0% |
| ! | AGGTATAATATGGTTTGATT+TGG | + | chr8.1:33546033-33546052 | MS.gene82962:intron | 25.0% |
| ! | ATAACGAAATCAAATCAACA+TGG | - | chr8.1:33545088-33545107 | None:intergenic | 25.0% |
| ! | ATATGAGATATACTCATTGT+AGG | - | chr8.1:33546574-33546593 | None:intergenic | 25.0% |
| ! | CATTCTGCATTACAAATATT+AGG | - | chr8.1:33546704-33546723 | None:intergenic | 25.0% |
| ! | CTAATATTTGTAATGCAGAA+TGG | + | chr8.1:33546702-33546721 | MS.gene82962:intron | 25.0% |
| ! | CTAGTTCAATGCTTATAATT+TGG | + | chr8.1:33544938-33544957 | MS.gene82962:intron | 25.0% |
| ! | GATTTCAATCAATTTCCTTT+AGG | + | chr8.1:33544846-33544865 | MS.gene82962:CDS | 25.0% |
| !! | TACAGACATATTTTGCATAT+TGG | - | chr8.1:33544772-33544791 | None:intergenic | 25.0% |
| !!! | TTTCTCTGAAATTATGGTTA+GGG | + | chr8.1:33546193-33546212 | MS.gene82962:intron | 25.0% |
| AAATATGTCTGTAATATCCG+AGG | + | chr8.1:33544779-33544798 | MS.gene82962:CDS | 30.0% | |
| AATAGAATCTGTTCACATGT+TGG | + | chr8.1:33545415-33545434 | MS.gene82962:CDS | 30.0% | |
| AATATGTCTGTAATATCCGA+GGG | + | chr8.1:33544780-33544799 | MS.gene82962:CDS | 30.0% | |
| AATTAATTATGCAGAGGACA+AGG | + | chr8.1:33546408-33546427 | MS.gene82962:intron | 30.0% | |
| ATCCAAGTCAATTAGGTTTA+TGG | - | chr8.1:33545828-33545847 | None:intergenic | 30.0% | |
| ATCCATAAACCTAATTGACT+TGG | + | chr8.1:33545823-33545842 | MS.gene82962:CDS | 30.0% | |
| CAAAATCCAATATATGTCGA+AGG | + | chr8.1:33545749-33545768 | MS.gene82962:CDS | 30.0% | |
| CCAGTAAATTAATTATGCAG+AGG | + | chr8.1:33546402-33546421 | MS.gene82962:intron | 30.0% | |
| CCTCTGCATAATTAATTTAC+TGG | - | chr8.1:33546405-33546424 | None:intergenic | 30.0% | |
| GTGAAATCACAACAAAGATA+TGG | - | chr8.1:33544905-33544924 | None:intergenic | 30.0% | |
| TAATCTGAAAGATGATAGAG+AGG | + | chr8.1:33546138-33546157 | MS.gene82962:CDS | 30.0% | |
| TGAGGATTTGATTGATGAAA+AGG | + | chr8.1:33546897-33546916 | MS.gene82962:CDS | 30.0% | |
| TGTCAATCAATCACAATTGT+TGG | + | chr8.1:33545190-33545209 | MS.gene82962:intron | 30.0% | |
| TTGTATATACCTCAATTCAG+AGG | - | chr8.1:33545159-33545178 | None:intergenic | 30.0% | |
| ! | AATCCTCATTTTGCTTATGA+AGG | - | chr8.1:33546885-33546904 | None:intergenic | 30.0% |
| ! | AGACTCTACTATTCAAGTTA+AGG | + | chr8.1:33545772-33545791 | MS.gene82962:CDS | 30.0% |
| ! | ATAGAGTCAGAGGTATAATA+TGG | + | chr8.1:33546023-33546042 | MS.gene82962:intron | 30.0% |
| ! | ATTTGGTACTCTTTATTTGC+AGG | + | chr8.1:33545351-33545370 | MS.gene82962:intron | 30.0% |
| ! | TTTACTGGTTAGTGATTGAA+TGG | - | chr8.1:33546390-33546409 | None:intergenic | 30.0% |
| ! | TTTGATTTCGTTATTGATGC+AGG | + | chr8.1:33545094-33545113 | MS.gene82962:intron | 30.0% |
| !! | ATAAACCTAATTGACTTGGA+TGG | + | chr8.1:33545827-33545846 | MS.gene82962:CDS | 30.0% |
| !! | GTTTCTCTGAAATTATGGTT+AGG | + | chr8.1:33546192-33546211 | MS.gene82962:intron | 30.0% |
| !! | TATTTCCTCCAAACTAGTTT+TGG | + | chr8.1:33545701-33545720 | MS.gene82962:CDS | 30.0% |
| !! | TTAATTTGTCCTTCATGAAC+AGG | + | chr8.1:33546827-33546846 | MS.gene82962:CDS | 30.0% |
| !! | TTCTCTGAAATTATGGTTAG+GGG | + | chr8.1:33546194-33546213 | MS.gene82962:intron | 30.0% |
| !!! | TTTTGTTTTTGTGGAACTAC+AGG | + | chr8.1:33546094-33546113 | MS.gene82962:intron | 30.0% |
| AATTATGCAAGACGATCCTA+AGG | + | chr8.1:33544806-33544825 | MS.gene82962:CDS | 35.0% | |
| AGAATGCCACAAAAAAACGT+AGG | + | chr8.1:33546431-33546450 | MS.gene82962:CDS | 35.0% | |
| AGTTTGATGTAAGCAAACCT+TGG | - | chr8.1:33545029-33545048 | None:intergenic | 35.0% | |
| AGTTTGGAAAATAGAGTCAG+AGG | + | chr8.1:33546013-33546032 | MS.gene82962:CDS | 35.0% | |
| ATTGACGAAGACGAATTTGA+TGG | - | chr8.1:33545527-33545546 | None:intergenic | 35.0% | |
| ATTGTTATCACCATTCTGAG+TGG | - | chr8.1:33545441-33545460 | None:intergenic | 35.0% | |
| CTAAACCATCCAAGTCAATT+AGG | - | chr8.1:33545835-33545854 | None:intergenic | 35.0% | |
| GAAAGCTCATGGAATAAAGT+TGG | + | chr8.1:33545980-33545999 | MS.gene82962:CDS | 35.0% | |
| GAAGCTGAGCTCAAATATAT+TGG | - | chr8.1:33545872-33545891 | None:intergenic | 35.0% | |
| GAATGCCACAAAAAAACGTA+GGG | + | chr8.1:33546432-33546451 | MS.gene82962:CDS | 35.0% | |
| GATTGTTGAACTTCATCAAC+AGG | - | chr8.1:33544989-33545008 | None:intergenic | 35.0% | |
| GTTGAATAATCATTCGCCTT+AGG | - | chr8.1:33544825-33544844 | None:intergenic | 35.0% | |
| TGAACAAACAAAGCAGATAG+AGG | + | chr8.1:33546858-33546877 | MS.gene82962:CDS | 35.0% | |
| TGGAGGAAATAATCTTCTTG+AGG | - | chr8.1:33545692-33545711 | None:intergenic | 35.0% | |
| TTGGTGAAGGGAATGAAAAT+TGG | + | chr8.1:33545720-33545739 | MS.gene82962:CDS | 35.0% | |
| TTGTTTCAATCTCTTCCAGA+AGG | - | chr8.1:33546927-33546946 | None:intergenic | 35.0% | |
| ! | GGGGTTTGAACAAGATATTT+TGG | + | chr8.1:33546213-33546232 | MS.gene82962:intron | 35.0% |
| ! | TACTCTTTATTTGCAGGCAA+AGG | + | chr8.1:33545357-33545376 | MS.gene82962:intron | 35.0% |
| ! | TCAAGATAGCTTGCATATCA+GGG | - | chr8.1:33546765-33546784 | None:intergenic | 35.0% |
| ! | TCTGTAACATCAGCTATTTC+AGG | + | chr8.1:33546304-33546323 | MS.gene82962:CDS | 35.0% |
| ! | TGATGTCATTTAAACGACGA+TGG | + | chr8.1:33546531-33546550 | MS.gene82962:intron | 35.0% |
| ! | TTCAAGATAGCTTGCATATC+AGG | - | chr8.1:33546766-33546785 | None:intergenic | 35.0% |
| ! | TTTTGTGGAACTACAGGTTT+CGG | + | chr8.1:33546100-33546119 | MS.gene82962:intron | 35.0% |
| !! | TGAATGCACCCTTTTGATTA+AGG | - | chr8.1:33545499-33545518 | None:intergenic | 35.0% |
| !!! | TCCAAACTAGTTTTGGTGAA+GGG | + | chr8.1:33545708-33545727 | MS.gene82962:CDS | 35.0% |
| AACTTCATCAACAGGTTCTC+TGG | - | chr8.1:33544981-33545000 | None:intergenic | 40.0% | |
| AGAATCCTTCCTGTTCATGA+AGG | - | chr8.1:33546839-33546858 | None:intergenic | 40.0% | |
| AGACTCTTTGTGAAAGCTCA+TGG | + | chr8.1:33545969-33545988 | MS.gene82962:CDS | 40.0% | |
| AGCTCATGGAATAAAGTTGG+AGG | + | chr8.1:33545983-33546002 | MS.gene82962:CDS | 40.0% | |
| ATGAGCTTTCACAAAGAGTC+TGG | - | chr8.1:33545970-33545989 | None:intergenic | 40.0% | |
| ATGATCGAACTTCCTTCTCA+AGG | - | chr8.1:33546801-33546820 | None:intergenic | 40.0% | |
| CAACAAAGATATGGCATAGC+AGG | - | chr8.1:33544896-33544915 | None:intergenic | 40.0% | |
| CTTGGCAAGAAACAAGTTAC+TGG | - | chr8.1:33545011-33545030 | None:intergenic | 40.0% | |
| GAGTCTCCTTCGACATATAT+TGG | - | chr8.1:33545758-33545777 | None:intergenic | 40.0% | |
| GCAGCAATAGAAGATTCACT+TGG | - | chr8.1:33545896-33545915 | None:intergenic | 40.0% | |
| GGACCTTCATAAGCAAAATG+AGG | + | chr8.1:33546879-33546898 | MS.gene82962:CDS | 40.0% | |
| GTCTTGCATAATTCTTCCCT+CGG | - | chr8.1:33544799-33544818 | None:intergenic | 40.0% | |
| TCCCTTCACCAAAACTAGTT+TGG | - | chr8.1:33545712-33545731 | None:intergenic | 40.0% | |
| TTTCGTTATTGATGCAGGCT+TGG | + | chr8.1:33545099-33545118 | MS.gene82962:intron | 40.0% | |
| TTTGTAATGCAGAATGGCTG+AGG | + | chr8.1:33546708-33546727 | MS.gene82962:intron | 40.0% | |
| TTTGTCCTTCATGAACAGGA+AGG | + | chr8.1:33546831-33546850 | MS.gene82962:CDS | 40.0% | |
| ! | AAGATAGCTTGCATATCAGG+GGG | - | chr8.1:33546763-33546782 | None:intergenic | 40.0% |
| ! | AGTTGGAGGAAGTACAAGTT+TGG | + | chr8.1:33545997-33546016 | MS.gene82962:CDS | 40.0% |
| ! | CAAGATAGCTTGCATATCAG+GGG | - | chr8.1:33546764-33546783 | None:intergenic | 40.0% |
| ! | CTTCACCAAAACTAGTTTGG+AGG | - | chr8.1:33545709-33545728 | None:intergenic | 40.0% |
| ! | CTTTGCTGAATCTGAAGCAT+TGG | + | chr8.1:33545049-33545068 | MS.gene82962:intron | 40.0% |
| ! | TGTCATTTAAACGACGATGG+AGG | + | chr8.1:33546534-33546553 | MS.gene82962:intron | 40.0% |
| !! | CAGTAACTTGTTTCTTGCCA+AGG | + | chr8.1:33545009-33545028 | MS.gene82962:CDS | 40.0% |
| !! | CCTTTAGGGTAATTGTCGTA+GGG | + | chr8.1:33544861-33544880 | MS.gene82962:intron | 40.0% |
| !! | TCCTTTAGGGTAATTGTCGT+AGG | + | chr8.1:33544860-33544879 | MS.gene82962:intron | 40.0% |
| !! | TTAGTCTCTACTGGTTTCGA+TGG | + | chr8.1:33545920-33545939 | MS.gene82962:CDS | 40.0% |
| !!! | CTCCAAACTAGTTTTGGTGA+AGG | + | chr8.1:33545707-33545726 | MS.gene82962:CDS | 40.0% |
| AGCAGCCAAATAGCGAAACA+AGG | + | chr8.1:33545635-33545654 | MS.gene82962:CDS | 45.0% | |
| CACAATGCTCAAGTAGCACA+AGG | + | chr8.1:33545392-33545411 | MS.gene82962:CDS | 45.0% | |
| CCCTACGACAATTACCCTAA+AGG | - | chr8.1:33544864-33544883 | None:intergenic | 45.0% | |
| GAAGTCGATCCTCTGAATTG+AGG | + | chr8.1:33545147-33545166 | MS.gene82962:CDS | 45.0% | |
| TGATGAAAAGGAACGCCTTC+TGG | + | chr8.1:33546909-33546928 | MS.gene82962:CDS | 45.0% | |
| TGCCACAAAAAAACGTAGGG+TGG | + | chr8.1:33546435-33546454 | MS.gene82962:CDS | 45.0% | |
| ! | AGAGTCTGGCTTGATATGCA+TGG | - | chr8.1:33545956-33545975 | None:intergenic | 45.0% |
| ! | GCTGCAACATTAGTCTCTAC+TGG | + | chr8.1:33545911-33545930 | MS.gene82962:CDS | 45.0% |
| !! | CTTGTGCTACTTGAGCATTG+TGG | - | chr8.1:33545394-33545413 | None:intergenic | 45.0% |
| !!! | CTCCACCCTACGTTTTTTTG+TGG | - | chr8.1:33546440-33546459 | None:intergenic | 45.0% |
| AGCTTGCATATCAGGGGGAA+TGG | - | chr8.1:33546758-33546777 | None:intergenic | 50.0% | |
| ATGCAGAATGGCTGAGGCAA+AGG | + | chr8.1:33546714-33546733 | MS.gene82962:intron | 50.0% | |
| CACATGTTGGCCACTCAGAA+TGG | + | chr8.1:33545428-33545447 | MS.gene82962:CDS | 50.0% | |
| CCAAATAGCGAAACAAGGCG+TGG | + | chr8.1:33545640-33545659 | MS.gene82962:CDS | 50.0% | |
| GAATGGCTGAGGCAAAGGAA+AGG | + | chr8.1:33546719-33546738 | MS.gene82962:intron | 50.0% | |
| TGCATATCAGGGGGAATGGA+TGG | - | chr8.1:33546754-33546773 | None:intergenic | 50.0% | |
| ! | ACTGGTTTCGATGGATGCGA+CGG | + | chr8.1:33545929-33545948 | MS.gene82962:CDS | 50.0% |
| !! | CCACGCCTTGTTTCGCTATT+TGG | - | chr8.1:33545643-33545662 | None:intergenic | 50.0% |
| GCGATGCGAAGACCTTGAGA+AGG | + | chr8.1:33546786-33546805 | MS.gene82962:CDS | 55.0% | |
| TAAACGACGATGGAGGCGAG+TGG | + | chr8.1:33546541-33546560 | MS.gene82962:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 33544744 | 33546972 | 33544744 | ID=MS.gene82962 |
| chr8.1 | mRNA | 33544744 | 33546972 | 33544744 | ID=MS.gene82962.t1;Parent=MS.gene82962 |
| chr8.1 | exon | 33544744 | 33544868 | 33544744 | ID=MS.gene82962.t1.exon1;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33544744 | 33544868 | 33544744 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33544982 | 33545030 | 33544982 | ID=MS.gene82962.t1.exon2;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33544982 | 33545030 | 33544982 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33545116 | 33545168 | 33545116 | ID=MS.gene82962.t1.exon3;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33545116 | 33545168 | 33545116 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33545373 | 33546034 | 33545373 | ID=MS.gene82962.t1.exon4;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33545373 | 33546034 | 33545373 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33546116 | 33546159 | 33546116 | ID=MS.gene82962.t1.exon5;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33546116 | 33546159 | 33546116 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33546280 | 33546325 | 33546280 | ID=MS.gene82962.t1.exon6;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33546280 | 33546325 | 33546280 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33546422 | 33546470 | 33546422 | ID=MS.gene82962.t1.exon7;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33546422 | 33546470 | 33546422 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| chr8.1 | exon | 33546720 | 33546972 | 33546720 | ID=MS.gene82962.t1.exon8;Parent=MS.gene82962.t1 |
| chr8.1 | CDS | 33546720 | 33546972 | 33546720 | ID=cds.MS.gene82962.t1;Parent=MS.gene82962.t1 |
| Gene Sequence |
| Protein sequence |
