Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055058.t1 | XP_004491743.1 | 56.5 | 393 | 143 | 5 | 1 | 367 | 1 | 391 | 1.00E-102 | 383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055058.t1 | Q8RXN6 | 54.0 | 348 | 148 | 5 | 29 | 367 | 46 | 390 | 1.0e-87 | 325.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055058.t1 | A0A1S2XP41 | 56.5 | 393 | 143 | 5 | 1 | 367 | 1 | 391 | 7.4e-103 | 383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049531 | MS.gene055058 | 0.804081 | 2.56E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene055058 | 0.833691 | 4.61E-56 | -1.69E-46 |
| MS.gene050430 | MS.gene055058 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene055015 | MS.gene055058 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene055058 | MS.gene058515 | 0.82808 | 1.10E-54 | -1.69E-46 |
| MS.gene055058 | MS.gene059276 | 0.824278 | 8.80E-54 | -1.69E-46 |
| MS.gene055058 | MS.gene061072 | 0.806092 | 9.73E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene06269 | 0.803858 | 2.85E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene063846 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene064075 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene06633 | 0.804484 | 2.11E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene068494 | 0.806975 | 6.34E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene069271 | 0.809649 | 1.70E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene069275 | 0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene070466 | 0.803767 | 2.98E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene071330 | 0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene09451 | 0.817731 | 2.83E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene09504 | 0.820115 | 8.13E-53 | -1.69E-46 |
| MS.gene055058 | MS.gene20657 | 0.858221 | 9.56E-63 | -1.69E-46 |
| MS.gene055058 | MS.gene22611 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene24211 | 0.808199 | 3.48E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene26056 | 0.816946 | 4.25E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene27720 | 0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene28203 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene28508 | 0.809857 | 1.54E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene29008 | 0.805381 | 1.37E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene29253 | 0.80603 | 1.00E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene30073 | 0.817818 | 2.71E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene30139 | 0.803229 | 3.85E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene30580 | 0.838241 | 3.23E-57 | -1.69E-46 |
| MS.gene055058 | MS.gene33228 | 0.809491 | 1.84E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene34615 | 0.837423 | 5.25E-57 | -1.69E-46 |
| MS.gene055058 | MS.gene38429 | 0.812855 | 3.44E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene38850 | 0.831635 | 1.49E-55 | -1.69E-46 |
| MS.gene055058 | MS.gene41039 | 0.802845 | 4.62E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene41240 | 0.811742 | 6.01E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene41509 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene41990 | 0.808322 | 3.28E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene42887 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene42891 | 0.816992 | 4.15E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene43560 | 0.818283 | 2.13E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene44575 | 0.821939 | 3.09E-53 | -1.69E-46 |
| MS.gene055058 | MS.gene44743 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene45794 | 0.813916 | 2.01E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene45975 | 0.800379 | 1.48E-48 | -1.69E-46 |
| MS.gene055058 | MS.gene46839 | 0.806451 | 8.17E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene47167 | 0.828127 | 1.07E-54 | -1.69E-46 |
| MS.gene055058 | MS.gene48858 | 0.817927 | 2.56E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene49924 | 0.800497 | 1.40E-48 | -1.69E-46 |
| MS.gene055058 | MS.gene51189 | 0.850478 | 1.65E-60 | -1.69E-46 |
| MS.gene055058 | MS.gene54517 | 0.810009 | 1.43E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene54921 | 0.829619 | 4.65E-55 | -1.69E-46 |
| MS.gene055058 | MS.gene57103 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene59780 | 0.853608 | 2.14E-61 | -1.69E-46 |
| MS.gene055058 | MS.gene61742 | 0.830439 | 2.94E-55 | -1.69E-46 |
| MS.gene055058 | MS.gene62748 | 0.833588 | 4.89E-56 | -1.69E-46 |
| MS.gene055058 | MS.gene63142 | 0.804594 | 2.00E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene64567 | 0.826794 | 2.23E-54 | -1.69E-46 |
| MS.gene055058 | MS.gene66192 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene66682 | 0.811114 | 8.23E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene67182 | 0.802518 | 5.40E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene69102 | 0.804714 | 1.89E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene69594 | 0.804304 | 2.30E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene71289 | 0.803664 | 3.13E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene73540 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene76061 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene76954 | 0.80023 | 1.59E-48 | -1.69E-46 |
| MS.gene055058 | MS.gene76987 | 0.833142 | 6.32E-56 | -1.69E-46 |
| MS.gene055058 | MS.gene78647 | 0.808952 | 2.41E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene79147 | 0.809383 | 1.94E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene79824 | 0.822325 | 2.52E-53 | -1.69E-46 |
| MS.gene055058 | MS.gene82302 | 0.810585 | 1.07E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene82668 | 0.819638 | 1.05E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene82682 | 0.806139 | 9.51E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene82793 | 0.822991 | 1.76E-53 | -1.69E-46 |
| MS.gene055058 | MS.gene82962 | 0.831823 | 1.34E-55 | -1.69E-46 |
| MS.gene055058 | MS.gene83166 | 0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene84001 | 0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene84968 | 0.814975 | 1.17E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene85079 | 0.847552 | 1.08E-59 | -1.69E-46 |
| MS.gene055058 | MS.gene85307 | 0.804718 | 1.89E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene85361 | 0.814207 | 1.73E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene88533 | 0.828696 | 7.79E-55 | -1.69E-46 |
| MS.gene055058 | MS.gene88539 | 0.845299 | 4.43E-59 | -1.69E-46 |
| MS.gene055058 | MS.gene88548 | 0.852289 | 5.09E-61 | -1.69E-46 |
| MS.gene055058 | MS.gene89778 | 0.803354 | 3.63E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene91451 | 0.819653 | 1.04E-52 | -1.69E-46 |
| MS.gene055058 | MS.gene92276 | 0.806819 | 6.84E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene93832 | 0.821336 | 4.26E-53 | -1.69E-46 |
| MS.gene055058 | MS.gene96960 | 0.805033 | 1.62E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene97534 | 0.802864 | 4.58E-49 | -1.69E-46 |
| MS.gene055058 | MS.gene98550 | 0.852268 | 5.16E-61 | -1.69E-46 |
| MS.gene055058 | MS.gene98673 | 0.814049 | 1.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055058.t1 | MTR_7g037560 | 60.546 | 403 | 128 | 8 | 1 | 376 | 1 | 399 | 3.28e-160 | 458 |
| MS.gene055058.t1 | MTR_7g037560 | 69.579 | 309 | 92 | 2 | 68 | 376 | 32 | 338 | 1.50e-154 | 442 |
| MS.gene055058.t1 | MTR_4g070910 | 28.169 | 284 | 196 | 4 | 70 | 347 | 159 | 440 | 6.39e-25 | 106 |
| MS.gene055058.t1 | MTR_5g010260 | 26.761 | 284 | 200 | 4 | 70 | 347 | 159 | 440 | 1.92e-24 | 105 |
| MS.gene055058.t1 | MTR_4g103790 | 24.111 | 253 | 166 | 6 | 70 | 307 | 170 | 411 | 2.84e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055058.t1 | AT1G60170 | 54.975 | 402 | 152 | 8 | 1 | 376 | 1 | 399 | 7.60e-125 | 369 |
| MS.gene055058.t1 | AT1G70400 | 47.826 | 184 | 79 | 3 | 9 | 192 | 3 | 169 | 2.09e-43 | 149 |
| MS.gene055058.t1 | AT1G70400 | 50.292 | 171 | 68 | 3 | 9 | 179 | 3 | 156 | 1.41e-41 | 145 |
| MS.gene055058.t1 | AT1G70400 | 50.292 | 171 | 68 | 3 | 9 | 179 | 3 | 156 | 7.50e-41 | 145 |
| MS.gene055058.t1 | AT5G27120 | 28.671 | 286 | 192 | 6 | 70 | 347 | 159 | 440 | 1.52e-22 | 99.4 |
| MS.gene055058.t1 | AT3G05060 | 28.151 | 238 | 163 | 3 | 70 | 305 | 160 | 391 | 7.42e-22 | 97.4 |
| MS.gene055058.t1 | AT5G27140 | 28.151 | 238 | 162 | 4 | 70 | 305 | 132 | 362 | 1.88e-21 | 95.9 |
| MS.gene055058.t1 | AT5G27140 | 28.151 | 238 | 162 | 4 | 70 | 305 | 130 | 360 | 3.13e-21 | 95.1 |
| MS.gene055058.t1 | AT1G56110 | 24.710 | 259 | 157 | 7 | 70 | 307 | 170 | 411 | 2.11e-16 | 80.9 |
| MS.gene055058.t1 | AT3G12860 | 24.111 | 253 | 166 | 6 | 70 | 307 | 170 | 411 | 2.90e-15 | 77.4 |
Find 77 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGATCAGTCGGGGAAAAT+TGG | 0.255934 | 7.4:-37943058 | MS.gene055058:CDS |
| CTTACCTTCATCCATTATAA+TGG | 0.281483 | 7.4:-37943512 | MS.gene055058:CDS |
| GCCAGCAGGGTTTATTTGTT+TGG | 0.292378 | 7.4:+37943225 | None:intergenic |
| GAAGAATAAGATTGTTGATT+TGG | 0.300057 | 7.4:-37943386 | MS.gene055058:CDS |
| AATCATCATCGTTAGAGTTT+AGG | 0.302268 | 7.4:+37943830 | None:intergenic |
| TGTACTATCGACTCAAGTTC+TGG | 0.304231 | 7.4:+37943613 | None:intergenic |
| GTTGCAAAAGAGAGCTGTTT+AGG | 0.313833 | 7.4:-37942836 | MS.gene055058:CDS |
| GCCTGCAATGTTCAACTTCT+CGG | 0.315343 | 7.4:-37943250 | MS.gene055058:CDS |
| CAACAACGGCAGAAAGATTA+GGG | 0.320401 | 7.4:+37943338 | None:intergenic |
| CCTAATCTTTCTGCCGTTGT+TGG | 0.329828 | 7.4:-37943337 | MS.gene055058:CDS |
| CCATCTCTCTTTGATTTACA+AGG | 0.355358 | 7.4:-37943538 | MS.gene055058:CDS |
| AGACTACACCTCCACCTCTT+AGG | 0.357069 | 7.4:-37943144 | MS.gene055058:CDS |
| ATCAGGCACCGGAAGTGGTT+TGG | 0.359049 | 7.4:+37942967 | None:intergenic |
| GTCGGTAAAGAAGGTGTAAT+CGG | 0.360003 | 7.4:+37943903 | None:intergenic |
| AAGTGAAACAACCATTATAA+TGG | 0.362777 | 7.4:+37943501 | None:intergenic |
| CCAACAACGGCAGAAAGATT+AGG | 0.365278 | 7.4:+37943337 | None:intergenic |
| TCAGGCACCGGAAGTGGTTT+GGG | 0.370700 | 7.4:+37942968 | None:intergenic |
| TCCGAGAAGTTGAACATTGC+AGG | 0.380624 | 7.4:+37943249 | None:intergenic |
| ATCTCAGGACATGTCAAATC+TGG | 0.393717 | 7.4:+37942799 | None:intergenic |
| CTTACATCTTCAACTACATC+GGG | 0.396381 | 7.4:-37943481 | MS.gene055058:CDS |
| AGAGAGGTGGTCGTAGGCTT+AGG | 0.405617 | 7.4:-37942925 | MS.gene055058:CDS |
| ATCTTGCTAAGTACTTCGTT+TGG | 0.412275 | 7.4:+37943448 | None:intergenic |
| TAAGCGACCCAAACCACTTC+CGG | 0.419671 | 7.4:-37942975 | MS.gene055058:CDS |
| GAATTGCATCCGATTAGCTT+TGG | 0.420471 | 7.4:+37942862 | None:intergenic |
| GCTCGTGTCGTTAAGAAGAT+AGG | 0.425576 | 7.4:-37943574 | MS.gene055058:CDS |
| AGTGGTTTGGGTCGCTTAGC+AGG | 0.426647 | 7.4:+37942980 | None:intergenic |
| GCCGTTGTTGGCAGTGTAGT+AGG | 0.462740 | 7.4:-37943325 | MS.gene055058:CDS |
| GAATAACTTGAGTTTGCTCC+AGG | 0.464545 | 7.4:+37943167 | None:intergenic |
| TTAATACATGGGGATCAGTC+GGG | 0.464836 | 7.4:-37943067 | MS.gene055058:CDS |
| GGAAGTCAGCCAAAGCTAAT+CGG | 0.467914 | 7.4:-37942871 | MS.gene055058:CDS |
| GATTCAGATGTCGTCGGAGA+AGG | 0.472957 | 7.4:-37943736 | MS.gene055058:CDS |
| CGAGTTGAGGTCGGTAAAGA+AGG | 0.480052 | 7.4:+37943894 | None:intergenic |
| TCAGCATCAGGCACCGGAAG+TGG | 0.490760 | 7.4:+37942962 | None:intergenic |
| AAAGCTAATCGGATGCAATT+CGG | 0.491444 | 7.4:-37942860 | MS.gene055058:CDS |
| AGAAGAATGCAATGGCAGAT+AGG | 0.496400 | 7.4:-37942892 | MS.gene055058:CDS |
| GACATCTGAATCGGCTTCCT+CGG | 0.508963 | 7.4:+37943747 | None:intergenic |
| GTTGCAGAAGAGAAGCCAGC+AGG | 0.511323 | 7.4:+37943211 | None:intergenic |
| GTACTATCGACTCAAGTTCT+GGG | 0.513331 | 7.4:+37943614 | None:intergenic |
| TTTGCTCCAGGTAACAATCA+TGG | 0.518611 | 7.4:+37943179 | None:intergenic |
| TTCTCCGACGACATCTGAAT+CGG | 0.522140 | 7.4:+37943738 | None:intergenic |
| AGAAGGATACAAATTAATCA+TGG | 0.522559 | 7.4:-37943719 | MS.gene055058:CDS |
| CTGTAAGCTCGCATCCTAAG+AGG | 0.522761 | 7.4:+37943130 | None:intergenic |
| ACTTACATCTTCAACTACAT+CGG | 0.523319 | 7.4:-37943482 | MS.gene055058:CDS |
| TCGGTAAAGAAGGTGTAATC+GGG | 0.525819 | 7.4:+37943904 | None:intergenic |
| CTTAATACATGGGGATCAGT+CGG | 0.533368 | 7.4:-37943068 | MS.gene055058:CDS |
| TCCAAACAAATAAACCCTGC+TGG | 0.536547 | 7.4:-37943226 | MS.gene055058:CDS |
| ACAACCATTATAATGGATGA+AGG | 0.538934 | 7.4:+37943508 | None:intergenic |
| GCTAAACTCATTGTAACAGC+TGG | 0.542896 | 7.4:-37943301 | MS.gene055058:CDS |
| GCACGAGTAGACTTAATACA+TGG | 0.545454 | 7.4:-37943079 | MS.gene055058:CDS |
| TTGGGTCGCTTAGCAGGAGA+AGG | 0.546598 | 7.4:+37942986 | None:intergenic |
| TTAGGCTCAGCATCAGGCAC+CGG | 0.551196 | 7.4:+37942956 | None:intergenic |
| CATCTCTCTTTGATTTACAA+GGG | 0.555500 | 7.4:-37943537 | MS.gene055058:CDS |
| TCCGCACTAAAATAGAAAAG+TGG | 0.558047 | 7.4:-37943015 | MS.gene055058:CDS |
| CATCGAGTTCAAGCGAGTTG+AGG | 0.567218 | 7.4:+37943881 | None:intergenic |
| TAAGTCTACTCGTGCAGCAA+GGG | 0.572657 | 7.4:+37943087 | None:intergenic |
| GCGATTCCATGATTGTTACC+TGG | 0.588759 | 7.4:-37943185 | MS.gene055058:CDS |
| TTGCAGAAGAGAAGCCAGCA+GGG | 0.588767 | 7.4:+37943212 | None:intergenic |
| GCTCGCATCCTAAGAGGTGG+AGG | 0.590799 | 7.4:+37943136 | None:intergenic |
| ACGACACGAGCATAATCGAC+AGG | 0.592119 | 7.4:+37943586 | None:intergenic |
| GAGTTCAAGCGAGTTGAGGT+CGG | 0.594671 | 7.4:+37943885 | None:intergenic |
| AGAAGTTGAACATTGCAGGC+AGG | 0.595660 | 7.4:+37943253 | None:intergenic |
| AAACTCATTGTAACAGCTGG+TGG | 0.600637 | 7.4:-37943298 | MS.gene055058:CDS |
| AGAAGAAGAGAGGTGGTCGT+AGG | 0.602525 | 7.4:-37942931 | MS.gene055058:CDS |
| TCCTACTACACTGCCAACAA+CGG | 0.603701 | 7.4:+37943324 | None:intergenic |
| TCGTAGGCTTAGGAAAATGA+AGG | 0.605286 | 7.4:-37942915 | MS.gene055058:CDS |
| GGATATCAGTATATCGCTGA+CGG | 0.614520 | 7.4:+37943788 | None:intergenic |
| CCTTGTAAATCAAAGAGAGA+TGG | 0.615774 | 7.4:+37943538 | None:intergenic |
| TAAGCTCGCATCCTAAGAGG+TGG | 0.626538 | 7.4:+37943133 | None:intergenic |
| TAATACATGGGGATCAGTCG+GGG | 0.626954 | 7.4:-37943066 | MS.gene055058:CDS |
| TTAAGTCTACTCGTGCAGCA+AGG | 0.636964 | 7.4:+37943086 | None:intergenic |
| CACGAGTAGACTTAATACAT+GGG | 0.644059 | 7.4:-37943078 | MS.gene055058:CDS |
| AATGAAGGAGAAGAATGCAA+TGG | 0.688085 | 7.4:-37942900 | MS.gene055058:CDS |
| GAAGCCGATTCAGATGTCGT+CGG | 0.692125 | 7.4:-37943742 | MS.gene055058:CDS |
| ACTAAAACTACAGAAAGCCG+AGG | 0.692504 | 7.4:-37943764 | MS.gene055058:CDS |
| AACAACGGCAGAAAGATTAG+GGG | 0.705682 | 7.4:+37943339 | None:intergenic |
| ACGAGTAGACTTAATACATG+GGG | 0.710410 | 7.4:-37943077 | MS.gene055058:CDS |
| TTACATCTTCAACTACATCG+GGG | 0.775984 | 7.4:-37943480 | MS.gene055058:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGTGAAACAACCATTATAA+TGG | + | chr7.4:37943217-37943236 | None:intergenic | 25.0% |
| ! | AGAAGGATACAAATTAATCA+TGG | - | chr7.4:37942996-37943015 | MS.gene055058:CDS | 25.0% |
| !! | GAAGAATAAGATTGTTGATT+TGG | - | chr7.4:37943329-37943348 | MS.gene055058:CDS | 25.0% |
| AATCATCATCGTTAGAGTTT+AGG | + | chr7.4:37942888-37942907 | None:intergenic | 30.0% | |
| ACTTACATCTTCAACTACAT+CGG | - | chr7.4:37943233-37943252 | MS.gene055058:CDS | 30.0% | |
| CTTACCTTCATCCATTATAA+TGG | - | chr7.4:37943203-37943222 | MS.gene055058:CDS | 30.0% | |
| ! | CATCTCTCTTTGATTTACAA+GGG | - | chr7.4:37943178-37943197 | MS.gene055058:CDS | 30.0% |
| !! | ACAACCATTATAATGGATGA+AGG | + | chr7.4:37943210-37943229 | None:intergenic | 30.0% |
| !!! | GATGCAGATTTTGATTTTGT+TGG | - | chr7.4:37942859-37942878 | MS.gene055058:CDS | 30.0% |
| AAAGCTAATCGGATGCAATT+CGG | - | chr7.4:37943855-37943874 | MS.gene055058:CDS | 35.0% | |
| AATGAAGGAGAAGAATGCAA+TGG | - | chr7.4:37943815-37943834 | MS.gene055058:CDS | 35.0% | |
| ACGAGTAGACTTAATACATG+GGG | - | chr7.4:37943638-37943657 | MS.gene055058:CDS | 35.0% | |
| ATCTTGCTAAGTACTTCGTT+TGG | + | chr7.4:37943270-37943289 | None:intergenic | 35.0% | |
| CACGAGTAGACTTAATACAT+GGG | - | chr7.4:37943637-37943656 | MS.gene055058:CDS | 35.0% | |
| CCTTGTAAATCAAAGAGAGA+TGG | + | chr7.4:37943180-37943199 | None:intergenic | 35.0% | |
| CTTACATCTTCAACTACATC+GGG | - | chr7.4:37943234-37943253 | MS.gene055058:CDS | 35.0% | |
| TCCGCACTAAAATAGAAAAG+TGG | - | chr7.4:37943700-37943719 | MS.gene055058:CDS | 35.0% | |
| TTACATCTTCAACTACATCG+GGG | - | chr7.4:37943235-37943254 | MS.gene055058:CDS | 35.0% | |
| ! | CCATCTCTCTTTGATTTACA+AGG | - | chr7.4:37943177-37943196 | MS.gene055058:CDS | 35.0% |
| !!! | GCCACTTTTCTATTTTAGTG+CGG | + | chr7.4:37943704-37943723 | None:intergenic | 35.0% |
| AAACTCATTGTAACAGCTGG+TGG | - | chr7.4:37943417-37943436 | MS.gene055058:CDS | 40.0% | |
| AACAACGGCAGAAAGATTAG+GGG | + | chr7.4:37943379-37943398 | None:intergenic | 40.0% | |
| ACTAAAACTACAGAAAGCCG+AGG | - | chr7.4:37942951-37942970 | MS.gene055058:CDS | 40.0% | |
| AGAAGAATGCAATGGCAGAT+AGG | - | chr7.4:37943823-37943842 | MS.gene055058:CDS | 40.0% | |
| CAACAACGGCAGAAAGATTA+GGG | + | chr7.4:37943380-37943399 | None:intergenic | 40.0% | |
| CCTAAAAAGAAGAAGAGAGG+TGG | - | chr7.4:37943777-37943796 | MS.gene055058:CDS | 40.0% | |
| CTTAATACATGGGGATCAGT+CGG | - | chr7.4:37943647-37943666 | MS.gene055058:CDS | 40.0% | |
| GAGCCTAAAAAGAAGAAGAG+AGG | - | chr7.4:37943774-37943793 | MS.gene055058:CDS | 40.0% | |
| GCACGAGTAGACTTAATACA+TGG | - | chr7.4:37943636-37943655 | MS.gene055058:CDS | 40.0% | |
| GCTAAACTCATTGTAACAGC+TGG | - | chr7.4:37943414-37943433 | MS.gene055058:CDS | 40.0% | |
| GGATATCAGTATATCGCTGA+CGG | + | chr7.4:37942930-37942949 | None:intergenic | 40.0% | |
| GTTGCAAAAGAGAGCTGTTT+AGG | - | chr7.4:37943879-37943898 | MS.gene055058:CDS | 40.0% | |
| TCCAAACAAATAAACCCTGC+TGG | - | chr7.4:37943489-37943508 | MS.gene055058:CDS | 40.0% | |
| TCGTAGGCTTAGGAAAATGA+AGG | - | chr7.4:37943800-37943819 | MS.gene055058:CDS | 40.0% | |
| TTAATACATGGGGATCAGTC+GGG | - | chr7.4:37943648-37943667 | MS.gene055058:CDS | 40.0% | |
| TTTGCTCCAGGTAACAATCA+TGG | + | chr7.4:37943539-37943558 | None:intergenic | 40.0% | |
| ! | CCACCTCTCTTCTTCTTTTT+AGG | + | chr7.4:37943780-37943799 | None:intergenic | 40.0% |
| ! | GAATAACTTGAGTTTGCTCC+AGG | + | chr7.4:37943551-37943570 | None:intergenic | 40.0% |
| ! | GTCGGTAAAGAAGGTGTAAT+CGG | + | chr7.4:37942815-37942834 | None:intergenic | 40.0% |
| ! | TCGGTAAAGAAGGTGTAATC+GGG | + | chr7.4:37942814-37942833 | None:intergenic | 40.0% |
| !! | GAATTGCATCCGATTAGCTT+TGG | + | chr7.4:37943856-37943875 | None:intergenic | 40.0% |
| !! | GTACTATCGACTCAAGTTCT+GGG | + | chr7.4:37943104-37943123 | None:intergenic | 40.0% |
| !! | TGTACTATCGACTCAAGTTC+TGG | + | chr7.4:37943105-37943124 | None:intergenic | 40.0% |
| !! | TTCTTTTTAGGCTCAGCATC+AGG | + | chr7.4:37943768-37943787 | None:intergenic | 40.0% |
| !!! | CGGCTTTCTGTAGTTTTAGT+AGG | + | chr7.4:37942951-37942970 | None:intergenic | 40.0% |
| AGAAGTTGAACATTGCAGGC+AGG | + | chr7.4:37943465-37943484 | None:intergenic | 45.0% | |
| CCAACAACGGCAGAAAGATT+AGG | + | chr7.4:37943381-37943400 | None:intergenic | 45.0% | |
| CCTAATCTTTCTGCCGTTGT+TGG | - | chr7.4:37943378-37943397 | MS.gene055058:CDS | 45.0% | |
| GCCAGCAGGGTTTATTTGTT+TGG | + | chr7.4:37943493-37943512 | None:intergenic | 45.0% | |
| GCCTGCAATGTTCAACTTCT+CGG | - | chr7.4:37943465-37943484 | MS.gene055058:CDS | 45.0% | |
| GCGATTCCATGATTGTTACC+TGG | - | chr7.4:37943530-37943549 | MS.gene055058:CDS | 45.0% | |
| GGAAGTCAGCCAAAGCTAAT+CGG | - | chr7.4:37943844-37943863 | MS.gene055058:CDS | 45.0% | |
| TAAGTCTACTCGTGCAGCAA+GGG | + | chr7.4:37943631-37943650 | None:intergenic | 45.0% | |
| TAATACATGGGGATCAGTCG+GGG | - | chr7.4:37943649-37943668 | MS.gene055058:CDS | 45.0% | |
| TCCGAGAAGTTGAACATTGC+AGG | + | chr7.4:37943469-37943488 | None:intergenic | 45.0% | |
| TCCTACTACACTGCCAACAA+CGG | + | chr7.4:37943394-37943413 | None:intergenic | 45.0% | |
| TTAAGTCTACTCGTGCAGCA+AGG | + | chr7.4:37943632-37943651 | None:intergenic | 45.0% | |
| TTCTCCGACGACATCTGAAT+CGG | + | chr7.4:37942980-37942999 | None:intergenic | 45.0% | |
| ! | GCTCGTGTCGTTAAGAAGAT+AGG | - | chr7.4:37943141-37943160 | MS.gene055058:CDS | 45.0% |
| ACGACACGAGCATAATCGAC+AGG | + | chr7.4:37943132-37943151 | None:intergenic | 50.0% | |
| AGAAGAAGAGAGGTGGTCGT+AGG | - | chr7.4:37943784-37943803 | MS.gene055058:CDS | 50.0% | |
| AGACTACACCTCCACCTCTT+AGG | - | chr7.4:37943571-37943590 | MS.gene055058:CDS | 50.0% | |
| CATCGAGTTCAAGCGAGTTG+AGG | + | chr7.4:37942837-37942856 | None:intergenic | 50.0% | |
| CTGTAAGCTCGCATCCTAAG+AGG | + | chr7.4:37943588-37943607 | None:intergenic | 50.0% | |
| GATTCAGATGTCGTCGGAGA+AGG | - | chr7.4:37942979-37942998 | MS.gene055058:CDS | 50.0% | |
| TAAGCGACCCAAACCACTTC+CGG | - | chr7.4:37943740-37943759 | MS.gene055058:CDS | 50.0% | |
| TAAGCTCGCATCCTAAGAGG+TGG | + | chr7.4:37943585-37943604 | None:intergenic | 50.0% | |
| TTGCAGAAGAGAAGCCAGCA+GGG | + | chr7.4:37943506-37943525 | None:intergenic | 50.0% | |
| ! | CGAGTTGAGGTCGGTAAAGA+AGG | + | chr7.4:37942824-37942843 | None:intergenic | 50.0% |
| ! | GAAGCCGATTCAGATGTCGT+CGG | - | chr7.4:37942973-37942992 | MS.gene055058:CDS | 50.0% |
| ! | GACATCTGAATCGGCTTCCT+CGG | + | chr7.4:37942971-37942990 | None:intergenic | 50.0% |
| ! | GAGTTCAAGCGAGTTGAGGT+CGG | + | chr7.4:37942833-37942852 | None:intergenic | 50.0% |
| AGAGAGGTGGTCGTAGGCTT+AGG | - | chr7.4:37943790-37943809 | MS.gene055058:CDS | 55.0% | |
| GCCGTTGTTGGCAGTGTAGT+AGG | - | chr7.4:37943390-37943409 | MS.gene055058:CDS | 55.0% | |
| GGGGATCAGTCGGGGAAAAT+TGG | - | chr7.4:37943657-37943676 | MS.gene055058:CDS | 55.0% | |
| GTTGCAGAAGAGAAGCCAGC+AGG | + | chr7.4:37943507-37943526 | None:intergenic | 55.0% | |
| TTAGGCTCAGCATCAGGCAC+CGG | + | chr7.4:37943762-37943781 | None:intergenic | 55.0% | |
| TTGGGTCGCTTAGCAGGAGA+AGG | + | chr7.4:37943732-37943751 | None:intergenic | 55.0% | |
| ! | AGTGGTTTGGGTCGCTTAGC+AGG | + | chr7.4:37943738-37943757 | None:intergenic | 55.0% |
| !! | ATCAGGCACCGGAAGTGGTT+TGG | + | chr7.4:37943751-37943770 | None:intergenic | 55.0% |
| !! | TCAGGCACCGGAAGTGGTTT+GGG | + | chr7.4:37943750-37943769 | None:intergenic | 55.0% |
| GCTCGCATCCTAAGAGGTGG+AGG | + | chr7.4:37943582-37943601 | None:intergenic | 60.0% | |
| !! | TCAGCATCAGGCACCGGAAG+TGG | + | chr7.4:37943756-37943775 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 37942802 | 37943935 | 37942802 | ID=MS.gene055058 |
| chr7.4 | mRNA | 37942802 | 37943935 | 37942802 | ID=MS.gene055058.t1;Parent=MS.gene055058 |
| chr7.4 | exon | 37942802 | 37943935 | 37942802 | ID=MS.gene055058.t1.exon1;Parent=MS.gene055058.t1 |
| chr7.4 | CDS | 37942802 | 37943935 | 37942802 | ID=cds.MS.gene055058.t1;Parent=MS.gene055058.t1 |
| Gene Sequence |
| Protein sequence |
