Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59780.t1 | RHN43583.1 | 72.4 | 170 | 47 | 0 | 87 | 256 | 33 | 202 | 3.30E-60 | 242.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59780.t1 | Q941L0 | 69.7 | 76 | 23 | 0 | 2 | 77 | 663 | 738 | 1.4e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59780.t1 | A0A396GSS1 | 72.4 | 170 | 47 | 0 | 87 | 256 | 33 | 202 | 2.4e-60 | 242.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene59780 | 0.824344 | 8.49E-54 | -1.69E-46 |
| MS.gene049587 | MS.gene59780 | 0.826658 | 2.40E-54 | -1.69E-46 |
| MS.gene049701 | MS.gene59780 | 0.832295 | 1.03E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene59780 | 0.902271 | 1.15E-78 | -1.69E-46 |
| MS.gene050430 | MS.gene59780 | 0.813971 | 1.95E-51 | -1.69E-46 |
| MS.gene050611 | MS.gene59780 | 0.82774 | 1.32E-54 | -1.69E-46 |
| MS.gene051710 | MS.gene59780 | 0.841424 | 4.79E-58 | -1.69E-46 |
| MS.gene052447 | MS.gene59780 | 0.808015 | 3.81E-50 | -1.69E-46 |
| MS.gene053512 | MS.gene59780 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene053974 | MS.gene59780 | 0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene054174 | MS.gene59780 | 0.847465 | 1.14E-59 | -1.69E-46 |
| MS.gene054175 | MS.gene59780 | 0.852011 | 6.10E-61 | -1.69E-46 |
| MS.gene054484 | MS.gene59780 | 0.831639 | 1.49E-55 | -1.69E-46 |
| MS.gene055017 | MS.gene59780 | 0.830451 | 2.92E-55 | -1.69E-46 |
| MS.gene055056 | MS.gene59780 | 0.809077 | 2.26E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene59780 | 0.853608 | 2.14E-61 | -1.69E-46 |
| MS.gene055952 | MS.gene59780 | 0.804223 | 2.40E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene59780 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene05762 | MS.gene59780 | 0.807525 | 4.84E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene59780 | 0.870473 | 1.42E-66 | -1.69E-46 |
| MS.gene058580 | MS.gene59780 | 0.810547 | 1.09E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene59780 | 0.843863 | 1.08E-58 | -1.69E-46 |
| MS.gene059458 | MS.gene59780 | 0.816189 | 6.29E-52 | -1.69E-46 |
| MS.gene059459 | MS.gene59780 | 0.821663 | 3.58E-53 | -1.69E-46 |
| MS.gene059460 | MS.gene59780 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene59780 | 0.810368 | 1.19E-50 | -1.69E-46 |
| MS.gene061072 | MS.gene59780 | 0.81425 | 1.69E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59780.t1 | MTR_2g066850 | 80.420 | 143 | 26 | 1 | 99 | 239 | 47 | 189 | 1.21e-70 | 238 |
| MS.gene59780.t1 | MTR_6g087760 | 86.747 | 83 | 11 | 0 | 256 | 338 | 555 | 637 | 7.55e-38 | 144 |
| MS.gene59780.t1 | MTR_8g446460 | 71.429 | 98 | 18 | 2 | 100 | 197 | 92 | 179 | 1.03e-36 | 134 |
| MS.gene59780.t1 | MTR_2g075630 | 42.289 | 201 | 75 | 8 | 114 | 279 | 63 | 257 | 2.65e-36 | 132 |
| MS.gene59780.t1 | MTR_8g037260 | 89.189 | 74 | 8 | 0 | 4 | 77 | 678 | 751 | 5.10e-36 | 139 |
| MS.gene59780.t1 | MTR_8g063010 | 52.893 | 121 | 44 | 3 | 134 | 241 | 57 | 177 | 1.52e-30 | 115 |
| MS.gene59780.t1 | MTR_3g030040 | 77.465 | 71 | 16 | 0 | 7 | 77 | 681 | 751 | 3.59e-29 | 119 |
| MS.gene59780.t1 | MTR_6g034670 | 63.542 | 96 | 29 | 2 | 176 | 271 | 1 | 90 | 3.92e-29 | 108 |
| MS.gene59780.t1 | MTR_5g044360 | 59.091 | 88 | 16 | 1 | 100 | 187 | 56 | 123 | 2.46e-24 | 98.2 |
| MS.gene59780.t1 | MTR_2g097020 | 61.446 | 83 | 29 | 2 | 118 | 197 | 2 | 84 | 4.08e-24 | 103 |
| MS.gene59780.t1 | MTR_4g046643 | 68.675 | 83 | 23 | 2 | 118 | 197 | 2 | 84 | 1.02e-21 | 96.7 |
| MS.gene59780.t1 | MTR_2g097010 | 66.279 | 86 | 26 | 2 | 119 | 201 | 3 | 88 | 1.80e-21 | 95.9 |
| MS.gene59780.t1 | MTR_7g106680 | 58.974 | 78 | 28 | 1 | 2 | 79 | 634 | 707 | 7.31e-19 | 88.2 |
| MS.gene59780.t1 | MTR_2g095400 | 79.245 | 53 | 8 | 2 | 118 | 167 | 2 | 54 | 3.28e-18 | 85.9 |
| MS.gene59780.t1 | MTR_1g036590 | 63.889 | 72 | 22 | 1 | 167 | 234 | 25 | 96 | 5.78e-17 | 81.6 |
| MS.gene59780.t1 | MTR_3g107520 | 56.944 | 72 | 29 | 1 | 6 | 77 | 690 | 759 | 5.78e-17 | 82.4 |
| MS.gene59780.t1 | MTR_8g092590 | 42.466 | 73 | 40 | 1 | 7 | 79 | 702 | 772 | 1.18e-11 | 66.2 |
| MS.gene59780.t1 | MTR_1g098550 | 51.562 | 64 | 29 | 1 | 14 | 77 | 710 | 771 | 4.89e-11 | 64.3 |
| MS.gene59780.t1 | MTR_1g098550 | 51.562 | 64 | 29 | 1 | 14 | 77 | 706 | 767 | 5.02e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59780.t1 | AT5G05170 | 69.863 | 73 | 22 | 0 | 5 | 77 | 666 | 738 | 6.01e-26 | 109 |
| MS.gene59780.t1 | AT4G32410 | 52.174 | 69 | 31 | 1 | 9 | 77 | 687 | 753 | 4.01e-15 | 77.0 |
| MS.gene59780.t1 | AT5G44030 | 49.351 | 77 | 38 | 1 | 1 | 77 | 367 | 442 | 5.44e-15 | 76.6 |
| MS.gene59780.t1 | AT5G44030 | 49.351 | 77 | 38 | 1 | 1 | 77 | 675 | 750 | 5.82e-15 | 76.6 |
| MS.gene59780.t1 | AT5G44030 | 49.351 | 77 | 38 | 1 | 1 | 77 | 646 | 721 | 6.10e-15 | 76.6 |
| MS.gene59780.t1 | AT2G25540 | 50.000 | 72 | 34 | 1 | 6 | 77 | 664 | 733 | 1.77e-13 | 72.0 |
| MS.gene59780.t1 | AT1G13790 | 44.872 | 78 | 36 | 3 | 128 | 201 | 9 | 83 | 1.20e-11 | 66.2 |
| MS.gene59780.t1 | AT1G13790 | 44.872 | 78 | 36 | 3 | 128 | 201 | 9 | 83 | 1.20e-11 | 66.2 |
| MS.gene59780.t1 | AT5G17420 | 51.562 | 64 | 30 | 1 | 15 | 77 | 636 | 699 | 9.27e-11 | 63.5 |
Find 63 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTATGTCTAGTCTTATT+TGG | 0.120158 | 8.3:+55145285 | None:intergenic |
| GCCTCCTTCAAAAGAGTTTC+TGG | 0.134508 | 8.3:+55146844 | None:intergenic |
| GAGAACCAATTCCGGTTATT+AGG | 0.172098 | 8.3:-55145872 | MS.gene59780:CDS |
| CACTTTGTGATGGAGAAAAT+AGG | 0.299950 | 8.3:-55145437 | MS.gene59780:CDS |
| GATATTGAAGAAGGAGTAGA+AGG | 0.310085 | 8.3:-55147215 | MS.gene59780:intron |
| TTTCGGTACGTAACAATAGT+AGG | 0.349766 | 8.3:+55145834 | None:intergenic |
| ACATACCCATGAATCTGATT+TGG | 0.351879 | 8.3:-55145805 | MS.gene59780:CDS |
| TTTGAGACATGCTTTCAAAA+TGG | 0.353318 | 8.3:-55145664 | MS.gene59780:CDS |
| ACTTTGTGATGGAGAAAATA+GGG | 0.355897 | 8.3:-55145436 | MS.gene59780:CDS |
| AGAACCAATTCCGGTTATTA+GGG | 0.369041 | 8.3:-55145871 | MS.gene59780:CDS |
| TGAACCCTAATAACCGGAAT+TGG | 0.376599 | 8.3:+55145867 | None:intergenic |
| AGTATTCCAAATCAGATTCA+TGG | 0.404965 | 8.3:+55145799 | None:intergenic |
| CATCATCAACTAAAGAATCT+TGG | 0.429784 | 8.3:+55145253 | None:intergenic |
| AAGAGGAGATCGACGCTGCT+TGG | 0.431615 | 8.3:-55145557 | MS.gene59780:CDS |
| AGGTCACAAGCTTCCTCAGC+AGG | 0.444090 | 8.3:+55145192 | None:intergenic |
| CAAAGGAGGAGAACCAATTC+CGG | 0.451133 | 8.3:-55145880 | MS.gene59780:CDS |
| AACTGTGTCGATCTTCAGTC+TGG | 0.457331 | 8.3:-55147240 | MS.gene59780:CDS |
| TGTTATCAGCGGTGGTTATG+AGG | 0.468040 | 8.3:-55146816 | MS.gene59780:CDS |
| TTATTATGAACCCTAATAAC+CGG | 0.470288 | 8.3:+55145861 | None:intergenic |
| AATTCTTATGCCGTTGAAAG+AGG | 0.471956 | 8.3:-55145574 | MS.gene59780:CDS |
| TAATCTTTGTTGTAACAAAA+CGG | 0.481557 | 8.3:+55145702 | None:intergenic |
| GTTATGAGGATAAATCAGAA+TGG | 0.482863 | 8.3:-55146802 | MS.gene59780:CDS |
| CCACAGACGTCGAAAACGCT+TGG | 0.482999 | 8.3:+55145529 | None:intergenic |
| ATTCAATAAAAGCAGCTGAT+TGG | 0.485805 | 8.3:+55146908 | None:intergenic |
| TTATGAGGATAAATCAGAAT+GGG | 0.486219 | 8.3:-55146801 | MS.gene59780:CDS |
| GTCTTCTCAATACTAACAAC+AGG | 0.493869 | 8.3:+55145477 | None:intergenic |
| GAGGACCTTGAGAAAAGATT+CGG | 0.496429 | 8.3:-55146931 | MS.gene59780:CDS |
| CTCAATACTAACAACAGGTT+CGG | 0.502695 | 8.3:+55145482 | None:intergenic |
| ATGTCTAGTCTTATTTGGAT+AGG | 0.507080 | 8.3:+55145290 | None:intergenic |
| TAGATATTACACAAAGTTGA+AGG | 0.519590 | 8.3:-55145769 | MS.gene59780:CDS |
| GGCAGATAACTCGCGTAAGA+CGG | 0.522278 | 8.3:-55145643 | MS.gene59780:CDS |
| GGCTATTATGTTATCAGCGG+TGG | 0.529818 | 8.3:-55146824 | MS.gene59780:CDS |
| CACAGACGTCGAAAACGCTT+GGG | 0.530092 | 8.3:+55145530 | None:intergenic |
| ACTAGACATAATTGCGAAGA+GGG | 0.530232 | 8.3:-55145276 | MS.gene59780:CDS |
| CACATGGTTTCACTTTGTGA+TGG | 0.540604 | 8.3:-55145447 | MS.gene59780:CDS |
| TTCGGTACGTAACAATAGTA+GGG | 0.544923 | 8.3:+55145835 | None:intergenic |
| GTATTCCAAATCAGATTCAT+GGG | 0.564088 | 8.3:+55145800 | None:intergenic |
| ACAAGCTTCCTCAGCAGGGA+TGG | 0.565314 | 8.3:+55145197 | None:intergenic |
| ATGTCTCAAAAGGTCGGTCA+AGG | 0.571507 | 8.3:+55145677 | None:intergenic |
| AGTCTGGAGGATATTGAAGA+AGG | 0.572692 | 8.3:-55147224 | MS.gene59780:CDS |
| GAAAGCATGTCTCAAAAGGT+CGG | 0.580997 | 8.3:+55145671 | None:intergenic |
| GAATCTACGCTGATGGAGAA+TGG | 0.583472 | 8.3:-55146889 | MS.gene59780:CDS |
| TGAGAAGACTGGTGAGCACA+TGG | 0.589881 | 8.3:-55145463 | MS.gene59780:CDS |
| GTTGTTAGTATTGAGAAGAC+TGG | 0.592091 | 8.3:-55145474 | MS.gene59780:CDS |
| GAGGAAGCTTGTGACCTCAC+CGG | 0.594168 | 8.3:-55145186 | MS.gene59780:CDS |
| AGACTGAAGATCGACACAGT+TGG | 0.615352 | 8.3:+55147242 | None:intergenic |
| AGAAACAATCTGAACAAAGG+AGG | 0.631512 | 8.3:-55145894 | MS.gene59780:CDS |
| AATTGATACCATCCCTGCTG+AGG | 0.634201 | 8.3:-55145205 | MS.gene59780:CDS |
| GATAGAAACAATCTGAACAA+AGG | 0.636551 | 8.3:-55145897 | MS.gene59780:intron |
| GAAACAAGTTTAACTGACAC+CGG | 0.639197 | 8.3:+55145167 | None:intergenic |
| GACTAGACATAATTGCGAAG+AGG | 0.643960 | 8.3:-55145277 | MS.gene59780:CDS |
| TGTGTCGATCTTCAGTCTGG+AGG | 0.650998 | 8.3:-55147237 | MS.gene59780:CDS |
| TAAATCAGAATGGGGAACAG+AGG | 0.664013 | 8.3:-55146792 | MS.gene59780:intron |
| TATGAGGATAAATCAGAATG+GGG | 0.668700 | 8.3:-55146800 | MS.gene59780:CDS |
| GCGTCGATCTCCTCTTTCAA+CGG | 0.670207 | 8.3:+55145564 | None:intergenic |
| GGTCACAAGCTTCCTCAGCA+GGG | 0.670761 | 8.3:+55145193 | None:intergenic |
| AACAGAAGATCTCATCGTGG+AGG | 0.674719 | 8.3:-55145325 | MS.gene59780:CDS |
| AGCACAACGTATGTCACGAG+AGG | 0.678396 | 8.3:-55146950 | MS.gene59780:CDS |
| GTTTCTGGAGTAGCACTCTG+AGG | 0.680321 | 8.3:+55146859 | None:intergenic |
| GGAGGCTATTATGTTATCAG+CGG | 0.687680 | 8.3:-55146827 | MS.gene59780:CDS |
| AAGTTTAACTGACACCGGTG+AGG | 0.700035 | 8.3:+55145172 | None:intergenic |
| TCTACGCTGATGGAGAATGG+TGG | 0.763159 | 8.3:-55146886 | MS.gene59780:CDS |
| AGTAACAGAAGATCTCATCG+TGG | 0.778770 | 8.3:-55145328 | MS.gene59780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTCTTAAATTATTAT+TGG | - | chr8.3:55145774-55145793 | MS.gene59780:CDS | 10.0% |
| !!! | TTCATTAGTTTTTTTTTTAA+AGG | + | chr8.3:55145825-55145844 | None:intergenic | 10.0% |
| !! | AAAAAAAATAGTTTGAACTA+TGG | + | chr8.3:55145283-55145302 | None:intergenic | 15.0% |
| !! | TGAATAAAATAAAAAACCAA+AGG | - | chr8.3:55145841-55145860 | MS.gene59780:CDS | 15.0% |
| !!! | ATAGAAAATTCTAGAAAATT+AGG | + | chr8.3:55146107-55146126 | None:intergenic | 15.0% |
| !!! | GTTTGTATAGTTTTATTTAT+TGG | + | chr8.3:55145996-55146015 | None:intergenic | 15.0% |
| !!! | TATAGTTTTATTTATTGGAT+CGG | + | chr8.3:55145991-55146010 | None:intergenic | 15.0% |
| !!! | TGTTTTCAATTTGTTATTTT+AGG | - | chr8.3:55146129-55146148 | MS.gene59780:intron | 15.0% |
| !!! | TTTAATTTTAGCAATTGTTA+TGG | - | chr8.3:55145438-55145457 | MS.gene59780:CDS | 15.0% |
| !! | AAAAAATTAAAGCAAGAAGA+AGG | - | chr8.3:55147037-55147056 | MS.gene59780:intron | 20.0% |
| !! | AAAAATTAAAGCAAGAAGAA+GGG | - | chr8.3:55147038-55147057 | MS.gene59780:intron | 20.0% |
| !! | AAATACCTAAATCATACTTT+AGG | + | chr8.3:55145421-55145440 | None:intergenic | 20.0% |
| !!! | ATTGTTATGGATATTTTTTC+AGG | - | chr8.3:55145451-55145470 | MS.gene59780:CDS | 20.0% |
| !!! | TAATCTTTGTTGTAACAAAA+CGG | + | chr8.3:55146746-55146765 | None:intergenic | 20.0% |
| ! | ATCATGTTAGAAAAAAGAAC+AGG | + | chr8.3:55146386-55146405 | None:intergenic | 25.0% |
| ! | GAAAATGACAACGTTAAATA+TGG | + | chr8.3:55145320-55145339 | None:intergenic | 25.0% |
| ! | GTTAACCTAAAGTATGATTT+AGG | - | chr8.3:55145413-55145432 | MS.gene59780:CDS | 25.0% |
| ! | TAGATATTACACAAAGTTGA+AGG | - | chr8.3:55146676-55146695 | MS.gene59780:intron | 25.0% |
| ! | TTATGAGGATAAATCAGAAT+GGG | - | chr8.3:55145644-55145663 | MS.gene59780:CDS | 25.0% |
| ! | TTATTATGAACCCTAATAAC+CGG | + | chr8.3:55146587-55146606 | None:intergenic | 25.0% |
| !!! | CAATTATGTCTAGTCTTATT+TGG | + | chr8.3:55147163-55147182 | None:intergenic | 25.0% |
| AAAGCTATAAGTTGTCTCTT+AGG | + | chr8.3:55146200-55146219 | None:intergenic | 30.0% | |
| ACAACTGTTAAGCATACATA+GGG | + | chr8.3:55146175-55146194 | None:intergenic | 30.0% | |
| AGTATTCCAAATCAGATTCA+TGG | + | chr8.3:55146649-55146668 | None:intergenic | 30.0% | |
| ATTAAATGTAACCGCATTGT+CGG | + | chr8.3:55145749-55145768 | None:intergenic | 30.0% | |
| ATTCAATAAAAGCAGCTGAT+TGG | + | chr8.3:55145540-55145559 | None:intergenic | 30.0% | |
| CATCATCAACTAAAGAATCT+TGG | + | chr8.3:55147195-55147214 | None:intergenic | 30.0% | |
| GATAGAAACAATCTGAACAA+AGG | - | chr8.3:55146548-55146567 | MS.gene59780:intron | 30.0% | |
| GTATTCCAAATCAGATTCAT+GGG | + | chr8.3:55146648-55146667 | None:intergenic | 30.0% | |
| GTTATGAGGATAAATCAGAA+TGG | - | chr8.3:55145643-55145662 | MS.gene59780:CDS | 30.0% | |
| TACAACTGTTAAGCATACAT+AGG | + | chr8.3:55146176-55146195 | None:intergenic | 30.0% | |
| TATGAGGATAAATCAGAATG+GGG | - | chr8.3:55145645-55145664 | MS.gene59780:CDS | 30.0% | |
| ! | ACTTTGTGATGGAGAAAATA+GGG | - | chr8.3:55147009-55147028 | MS.gene59780:intron | 30.0% |
| ! | TTTGAGACATGCTTTCAAAA+TGG | - | chr8.3:55146781-55146800 | MS.gene59780:intron | 30.0% |
| ! | TTTTATTGAATCTACGCTGA+TGG | - | chr8.3:55145549-55145568 | MS.gene59780:CDS | 30.0% |
| !! | ATGTCTAGTCTTATTTGGAT+AGG | + | chr8.3:55147158-55147177 | None:intergenic | 30.0% |
| !! | TTTTGAAAGCATGTCTCAAA+AGG | + | chr8.3:55146781-55146800 | None:intergenic | 30.0% |
| !!! | ATGGATATTTTTTCAGGTTC+TGG | - | chr8.3:55145457-55145476 | MS.gene59780:CDS | 30.0% |
| !!! | CATGGGTATGTTTTGATTTT+CGG | + | chr8.3:55146631-55146650 | None:intergenic | 30.0% |
| !!! | TTGTTATTTTAGGCCCATTA+GGG | - | chr8.3:55146139-55146158 | MS.gene59780:intron | 30.0% |
| !!! | TTTGTTATTTTAGGCCCATT+AGG | - | chr8.3:55146138-55146157 | MS.gene59780:intron | 30.0% |
| AACCTAAAGGATAAAGAGAC+AGG | + | chr8.3:55146306-55146325 | None:intergenic | 35.0% | |
| AACCTGTCTCTTTATCCTTT+AGG | - | chr8.3:55146301-55146320 | MS.gene59780:intron | 35.0% | |
| AATTCTTATGCCGTTGAAAG+AGG | - | chr8.3:55146871-55146890 | MS.gene59780:CDS | 35.0% | |
| ACATACCCATGAATCTGATT+TGG | - | chr8.3:55146640-55146659 | MS.gene59780:intron | 35.0% | |
| ACTAGACATAATTGCGAAGA+GGG | - | chr8.3:55147169-55147188 | MS.gene59780:intron | 35.0% | |
| AGAAACAATCTGAACAAAGG+AGG | - | chr8.3:55146551-55146570 | MS.gene59780:intron | 35.0% | |
| AGAACCAATTCCGGTTATTA+GGG | - | chr8.3:55146574-55146593 | MS.gene59780:intron | 35.0% | |
| AGGGAAATAACAAACCCTAA+TGG | + | chr8.3:55146156-55146175 | None:intergenic | 35.0% | |
| CTCAATACTAACAACAGGTT+CGG | + | chr8.3:55146966-55146985 | None:intergenic | 35.0% | |
| GATATTGAAGAAGGAGTAGA+AGG | - | chr8.3:55145230-55145249 | MS.gene59780:CDS | 35.0% | |
| GGGAAATAACAAACCCTAAT+GGG | + | chr8.3:55146155-55146174 | None:intergenic | 35.0% | |
| GTCTTCTCAATACTAACAAC+AGG | + | chr8.3:55146971-55146990 | None:intergenic | 35.0% | |
| TTAGCAAACGCTAAACCTAA+AGG | + | chr8.3:55146319-55146338 | None:intergenic | 35.0% | |
| TTCGGTACGTAACAATAGTA+GGG | + | chr8.3:55146613-55146632 | None:intergenic | 35.0% | |
| TTTCGGTACGTAACAATAGT+AGG | + | chr8.3:55146614-55146633 | None:intergenic | 35.0% | |
| TTTCTAACATGATCAGCCAT+GGG | - | chr8.3:55146393-55146412 | MS.gene59780:intron | 35.0% | |
| ! | CACTTTGTGATGGAGAAAAT+AGG | - | chr8.3:55147008-55147027 | MS.gene59780:intron | 35.0% |
| ! | GTTGTTAGTATTGAGAAGAC+TGG | - | chr8.3:55146971-55146990 | MS.gene59780:CDS | 35.0% |
| ! | TACTCCAGAAACTCTTTTGA+AGG | - | chr8.3:55145597-55145616 | MS.gene59780:CDS | 35.0% |
| ! | TCTATCGTTGTTGTTGTTGT+TGG | + | chr8.3:55146534-55146553 | None:intergenic | 35.0% |
| ! | TTTTCTAACATGATCAGCCA+TGG | - | chr8.3:55146392-55146411 | MS.gene59780:intron | 35.0% |
| !! | ATCTGCTCAGTTGATAGTAT+TGG | + | chr8.3:55145939-55145958 | None:intergenic | 35.0% |
| !! | CAGTTGATAGTATTGGAATG+TGG | + | chr8.3:55145932-55145951 | None:intergenic | 35.0% |
| !!! | TTTTCAGGTTCTGGATTTGA+TGG | - | chr8.3:55145466-55145485 | MS.gene59780:CDS | 35.0% |
| AACATGACATGGATCTCCTT+TGG | + | chr8.3:55145860-55145879 | None:intergenic | 40.0% | |
| AACTATTATGCAACGAACGC+AGG | + | chr8.3:55145260-55145279 | None:intergenic | 40.0% | |
| AAGGAGATCCATGTCATGTT+CGG | - | chr8.3:55145860-55145879 | MS.gene59780:CDS | 40.0% | |
| AGCCACAAACCTGTCAAATA+AGG | + | chr8.3:55146278-55146297 | None:intergenic | 40.0% | |
| AGTAACAGAAGATCTCATCG+TGG | - | chr8.3:55147117-55147136 | MS.gene59780:intron | 40.0% | |
| AGTCTGGAGGATATTGAAGA+AGG | - | chr8.3:55145221-55145240 | MS.gene59780:CDS | 40.0% | |
| CACATGGTTTCACTTTGTGA+TGG | - | chr8.3:55146998-55147017 | MS.gene59780:intron | 40.0% | |
| GACTAGACATAATTGCGAAG+AGG | - | chr8.3:55147168-55147187 | MS.gene59780:intron | 40.0% | |
| GAGAACCAATTCCGGTTATT+AGG | - | chr8.3:55146573-55146592 | MS.gene59780:intron | 40.0% | |
| GAGGACCTTGAGAAAAGATT+CGG | - | chr8.3:55145514-55145533 | MS.gene59780:CDS | 40.0% | |
| GCCACAAACCTGTCAAATAA+GGG | + | chr8.3:55146277-55146296 | None:intergenic | 40.0% | |
| GGAGGCTATTATGTTATCAG+CGG | - | chr8.3:55145618-55145637 | MS.gene59780:CDS | 40.0% | |
| TAAATCAGAATGGGGAACAG+AGG | - | chr8.3:55145653-55145672 | MS.gene59780:CDS | 40.0% | |
| TGAACCCTAATAACCGGAAT+TGG | + | chr8.3:55146581-55146600 | None:intergenic | 40.0% | |
| TTGAAGAAGGAGTAGAAGGT+AGG | - | chr8.3:55145234-55145253 | MS.gene59780:CDS | 40.0% | |
| ! | ACCCTTATTTGACAGGTTTG+TGG | - | chr8.3:55146273-55146292 | MS.gene59780:intron | 40.0% |
| ! | AGATTTTCTCTCGATTCTGG+TGG | - | chr8.3:55146241-55146260 | MS.gene59780:intron | 40.0% |
| ! | AGCTTGCTTTCTTGCTTCTT+TGG | - | chr8.3:55145359-55145378 | MS.gene59780:CDS | 40.0% |
| ! | ATTGGCCGAATCTTTTCTCA+AGG | + | chr8.3:55145522-55145541 | None:intergenic | 40.0% |
| ! | GAAAGCATGTCTCAAAAGGT+CGG | + | chr8.3:55146777-55146796 | None:intergenic | 40.0% |
| ! | TCGAGATTTTCTCTCGATTC+TGG | - | chr8.3:55146238-55146257 | MS.gene59780:intron | 40.0% |
| ! | TTCGGAAACCCTTATTTGAC+AGG | - | chr8.3:55146266-55146285 | MS.gene59780:intron | 40.0% |
| !! | TCCAGAAACTCTTTTGAAGG+AGG | - | chr8.3:55145600-55145619 | MS.gene59780:CDS | 40.0% |
| AACAGAAGATCTCATCGTGG+AGG | - | chr8.3:55147120-55147139 | MS.gene59780:intron | 45.0% | |
| AATTGATACCATCCCTGCTG+AGG | - | chr8.3:55147240-55147259 | MS.gene59780:CDS | 45.0% | |
| AGACTGAAGATCGACACAGT+TGG | + | chr8.3:55145206-55145225 | None:intergenic | 45.0% | |
| ATCGAAAGCTAAGCGTGTCT+AGG | - | chr8.3:55145721-55145740 | MS.gene59780:CDS | 45.0% | |
| ATGTCTCAAAAGGTCGGTCA+AGG | + | chr8.3:55146771-55146790 | None:intergenic | 45.0% | |
| CAAAGGAGGAGAACCAATTC+CGG | - | chr8.3:55146565-55146584 | MS.gene59780:intron | 45.0% | |
| CAATGACACCGAACATGACA+TGG | + | chr8.3:55145871-55145890 | None:intergenic | 45.0% | |
| GAATCTACGCTGATGGAGAA+TGG | - | chr8.3:55145556-55145575 | MS.gene59780:CDS | 45.0% | |
| GCCTCCTTCAAAAGAGTTTC+TGG | + | chr8.3:55145604-55145623 | None:intergenic | 45.0% | |
| GGCTATTATGTTATCAGCGG+TGG | - | chr8.3:55145621-55145640 | MS.gene59780:CDS | 45.0% | |
| GGGAGATCAACTTATGACGA+GGG | - | chr8.3:55146413-55146432 | MS.gene59780:intron | 45.0% | |
| TATGGCAGCGTGGACAATTA+AGG | - | chr8.3:55146493-55146512 | MS.gene59780:intron | 45.0% | |
| TCGAAAGCTAAGCGTGTCTA+GGG | - | chr8.3:55145722-55145741 | MS.gene59780:CDS | 45.0% | |
| TGATACCAACTGACGCAGTA+CGG | + | chr8.3:55146351-55146370 | None:intergenic | 45.0% | |
| TGGGAGATCAACTTATGACG+AGG | - | chr8.3:55146412-55146431 | MS.gene59780:intron | 45.0% | |
| TGTTATCAGCGGTGGTTATG+AGG | - | chr8.3:55145629-55145648 | MS.gene59780:CDS | 45.0% | |
| ! | AACTGTGTCGATCTTCAGTC+TGG | - | chr8.3:55145205-55145224 | MS.gene59780:CDS | 45.0% |
| ! | GTTTTCGACGTCTGTGGAAT+CGG | - | chr8.3:55146922-55146941 | MS.gene59780:CDS | 45.0% |
| !! | CAAAGCGCTGTCAGATCATA+TGG | - | chr8.3:55146475-55146494 | MS.gene59780:intron | 45.0% |
| !! | CGTCATAAGTTGATCTCCCA+TGG | + | chr8.3:55146412-55146431 | None:intergenic | 45.0% |
| !! | CTCTCGATTCTGGTGGATTT+CGG | - | chr8.3:55146248-55146267 | MS.gene59780:intron | 45.0% |
| AGCACAACGTATGTCACGAG+AGG | - | chr8.3:55145495-55145514 | MS.gene59780:CDS | 50.0% | |
| ATCAGAATGGGGAACAGAGG+TGG | - | chr8.3:55145656-55145675 | MS.gene59780:CDS | 50.0% | |
| CACAGACGTCGAAAACGCTT+GGG | + | chr8.3:55146918-55146937 | None:intergenic | 50.0% | |
| GGCAGATAACTCGCGTAAGA+CGG | - | chr8.3:55146802-55146821 | MS.gene59780:CDS | 50.0% | |
| TCAGAATGGGGAACAGAGGT+GGG | - | chr8.3:55145657-55145676 | MS.gene59780:CDS | 50.0% | |
| TCTACGCTGATGGAGAATGG+TGG | - | chr8.3:55145559-55145578 | MS.gene59780:CDS | 50.0% | |
| TGAGAAGACTGGTGAGCACA+TGG | - | chr8.3:55146982-55147001 | MS.gene59780:intron | 50.0% | |
| TGATGTCGTGGTAAGAGTCG+CGG | + | chr8.3:55146457-55146476 | None:intergenic | 50.0% | |
| TGTCAGATCATATGGCAGCG+TGG | - | chr8.3:55146483-55146502 | MS.gene59780:intron | 50.0% | |
| ! | ATGACGAGGGCAGAGTTTTC+CGG | - | chr8.3:55146426-55146445 | MS.gene59780:intron | 50.0% |
| ! | GCGTCGATCTCCTCTTTCAA+CGG | + | chr8.3:55146884-55146903 | None:intergenic | 50.0% |
| ! | TGTGTCGATCTTCAGTCTGG+AGG | - | chr8.3:55145208-55145227 | MS.gene59780:CDS | 50.0% |
| !! | GTTTCTGGAGTAGCACTCTG+AGG | + | chr8.3:55145589-55145608 | None:intergenic | 50.0% |
| AAGAGGAGATCGACGCTGCT+TGG | - | chr8.3:55146888-55146907 | MS.gene59780:CDS | 55.0% | |
| ACAAGCTTCCTCAGCAGGGA+TGG | + | chr8.3:55147251-55147270 | None:intergenic | 55.0% | |
| ACTGACGCAGTACGGAAGCA+AGG | + | chr8.3:55146343-55146362 | None:intergenic | 55.0% | |
| AGGTCACAAGCTTCCTCAGC+AGG | + | chr8.3:55147256-55147275 | None:intergenic | 55.0% | |
| CCACAGACGTCGAAAACGCT+TGG | + | chr8.3:55146919-55146938 | None:intergenic | 55.0% | |
| CTGACAGCGCTTTGATGTCG+TGG | + | chr8.3:55146469-55146488 | None:intergenic | 55.0% | |
| CTGACGCAGTACGGAAGCAA+GGG | + | chr8.3:55146342-55146361 | None:intergenic | 55.0% | |
| GAGGAAGCTTGTGACCTCAC+CGG | - | chr8.3:55147259-55147278 | MS.gene59780:CDS | 55.0% | |
| GGTAAGAGTCGCGGTTATGC+CGG | + | chr8.3:55146448-55146467 | None:intergenic | 55.0% | |
| GGTCACAAGCTTCCTCAGCA+GGG | + | chr8.3:55147255-55147274 | None:intergenic | 55.0% | |
| GTGTCTAGGGACCGACAATG+CGG | - | chr8.3:55145735-55145754 | MS.gene59780:CDS | 55.0% | |
| TGCTTCCGTACTGCGTCAGT+TGG | - | chr8.3:55146343-55146362 | MS.gene59780:intron | 55.0% | |
| ! | CCAAGCGTTTTCGACGTCTG+TGG | - | chr8.3:55146916-55146935 | MS.gene59780:CDS | 55.0% |
| ! | GCGTCAGTTGGTATCAGAGC+AGG | - | chr8.3:55146355-55146374 | MS.gene59780:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 55145176 | 55147291 | 55145176 | ID=MS.gene59780 |
| chr8.3 | mRNA | 55145176 | 55147291 | 55145176 | ID=MS.gene59780.t1;Parent=MS.gene59780 |
| chr8.3 | exon | 55147216 | 55147291 | 55147216 | ID=MS.gene59780.t1.exon1;Parent=MS.gene59780.t1 |
| chr8.3 | CDS | 55147216 | 55147291 | 55147216 | ID=cds.MS.gene59780.t1;Parent=MS.gene59780.t1 |
| chr8.3 | exon | 55146793 | 55146994 | 55146793 | ID=MS.gene59780.t1.exon2;Parent=MS.gene59780.t1 |
| chr8.3 | CDS | 55146793 | 55146994 | 55146793 | ID=cds.MS.gene59780.t1;Parent=MS.gene59780.t1 |
| chr8.3 | exon | 55145176 | 55145914 | 55145176 | ID=MS.gene59780.t1.exon3;Parent=MS.gene59780.t1 |
| chr8.3 | CDS | 55145176 | 55145914 | 55145176 | ID=cds.MS.gene59780.t1;Parent=MS.gene59780.t1 |
| Gene Sequence |
| Protein sequence |
