Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061389.t1 | XP_003621757.1 | 99.1 | 451 | 4 | 0 | 1 | 451 | 1 | 451 | 2.40E-255 | 891 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061389.t1 | Q8LJW3 | 57.2 | 453 | 181 | 6 | 7 | 451 | 4 | 451 | 9.7e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061389.t1 | G7KUS8 | 99.1 | 451 | 4 | 0 | 1 | 451 | 1 | 451 | 1.7e-255 | 891.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene061389 | 0.816411 | 5.61E-52 | -1.69E-46 |
| MS.gene049669 | MS.gene061389 | 0.818803 | 1.62E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene061389 | 0.813213 | 2.87E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene061389 | 0.819891 | 9.15E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene061389 | 0.832718 | 8.06E-56 | -1.69E-46 |
| MS.gene052586 | MS.gene061389 | 0.820141 | 8.02E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene061389 | 0.803497 | 3.39E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene061389 | 0.81273 | 3.66E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene061389 | -0.803663 | 3.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061389.t1 | MTR_7g022470 | 99.113 | 451 | 4 | 0 | 1 | 451 | 1 | 451 | 0.0 | 920 |
| MS.gene061389.t1 | MTR_5g047260 | 58.315 | 451 | 175 | 5 | 4 | 451 | 11 | 451 | 1.62e-180 | 512 |
| MS.gene061389.t1 | MTR_7g028050 | 56.250 | 448 | 184 | 5 | 10 | 451 | 1 | 442 | 1.64e-175 | 499 |
| MS.gene061389.t1 | MTR_3g088885 | 55.012 | 409 | 172 | 5 | 10 | 409 | 9 | 414 | 3.20e-157 | 452 |
| MS.gene061389.t1 | MTR_5g011580 | 51.570 | 446 | 198 | 5 | 12 | 451 | 8 | 441 | 9.11e-153 | 441 |
| MS.gene061389.t1 | MTR_4g101950 | 50.998 | 451 | 193 | 6 | 12 | 451 | 8 | 441 | 3.97e-152 | 439 |
| MS.gene061389.t1 | MTR_1g029520 | 51.852 | 432 | 189 | 8 | 26 | 441 | 254 | 682 | 1.30e-143 | 426 |
| MS.gene061389.t1 | MTR_5g047260 | 57.465 | 355 | 146 | 3 | 4 | 358 | 11 | 360 | 5.60e-141 | 408 |
| MS.gene061389.t1 | MTR_7g028050 | 56.232 | 345 | 139 | 5 | 113 | 451 | 1 | 339 | 2.59e-130 | 380 |
| MS.gene061389.t1 | MTR_5g015170 | 43.662 | 426 | 217 | 6 | 10 | 413 | 9 | 433 | 1.07e-120 | 361 |
| MS.gene061389.t1 | MTR_5g047260 | 57.426 | 303 | 125 | 2 | 4 | 306 | 11 | 309 | 7.27e-119 | 350 |
| MS.gene061389.t1 | MTR_4g097380 | 38.661 | 463 | 261 | 5 | 10 | 449 | 28 | 490 | 2.30e-103 | 317 |
| MS.gene061389.t1 | MTR_1g012740 | 30.769 | 169 | 99 | 4 | 226 | 393 | 17 | 168 | 2.07e-20 | 88.6 |
| MS.gene061389.t1 | MTR_7g102330 | 22.905 | 358 | 240 | 11 | 36 | 371 | 20 | 363 | 6.44e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061389.t1 | AT1G69040 | 57.174 | 453 | 181 | 6 | 7 | 451 | 8 | 455 | 0.0 | 517 |
| MS.gene061389.t1 | AT1G69040 | 57.174 | 453 | 181 | 6 | 7 | 451 | 4 | 451 | 0.0 | 517 |
| MS.gene061389.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 5.56e-164 | 470 |
| MS.gene061389.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 5.56e-164 | 470 |
| MS.gene061389.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 7.53e-164 | 469 |
| MS.gene061389.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 7.53e-164 | 469 |
| MS.gene061389.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 9.37e-164 | 469 |
| MS.gene061389.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 1.60e-163 | 468 |
| MS.gene061389.t1 | AT2G03730 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 1.13e-160 | 462 |
| MS.gene061389.t1 | AT2G03730 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 1.13e-160 | 462 |
| MS.gene061389.t1 | AT1G76990 | 54.846 | 423 | 175 | 5 | 10 | 423 | 9 | 424 | 1.49e-160 | 461 |
| MS.gene061389.t1 | AT1G76990 | 54.846 | 423 | 175 | 5 | 10 | 423 | 9 | 424 | 1.49e-160 | 461 |
| MS.gene061389.t1 | AT1G76990 | 54.846 | 423 | 175 | 5 | 10 | 423 | 9 | 424 | 1.49e-160 | 461 |
| MS.gene061389.t1 | AT1G76990 | 54.846 | 423 | 175 | 5 | 10 | 423 | 9 | 424 | 1.49e-160 | 461 |
| MS.gene061389.t1 | AT1G76990 | 54.846 | 423 | 175 | 5 | 10 | 423 | 9 | 424 | 1.49e-160 | 461 |
| MS.gene061389.t1 | AT1G12420 | 50.220 | 454 | 192 | 8 | 12 | 451 | 8 | 441 | 9.27e-143 | 416 |
| MS.gene061389.t1 | AT5G25320 | 43.763 | 489 | 220 | 11 | 10 | 444 | 9 | 496 | 2.51e-138 | 406 |
| MS.gene061389.t1 | AT4G22780 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.51e-134 | 395 |
| MS.gene061389.t1 | AT4G22780 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.77e-11 | 65.9 |
| MS.gene061389.t1 | AT4G22780 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.51e-134 | 395 |
| MS.gene061389.t1 | AT4G22780 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.77e-11 | 65.9 |
| MS.gene061389.t1 | AT5G25320 | 44.105 | 458 | 203 | 9 | 39 | 444 | 1 | 457 | 6.53e-134 | 394 |
| MS.gene061389.t1 | AT3G01990 | 57.057 | 333 | 137 | 4 | 11 | 342 | 3 | 330 | 1.62e-128 | 375 |
| MS.gene061389.t1 | AT3G01990 | 57.057 | 333 | 137 | 4 | 11 | 342 | 17 | 344 | 1.71e-128 | 376 |
| MS.gene061389.t1 | AT3G01990 | 57.622 | 328 | 133 | 4 | 11 | 337 | 17 | 339 | 2.82e-128 | 375 |
| MS.gene061389.t1 | AT5G65890 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.60e-121 | 362 |
| MS.gene061389.t1 | AT5G65890 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.60e-121 | 362 |
| MS.gene061389.t1 | AT1G12420 | 48.586 | 389 | 166 | 8 | 77 | 451 | 1 | 369 | 6.22e-111 | 332 |
| MS.gene061389.t1 | AT3G01990 | 55.631 | 293 | 124 | 4 | 11 | 302 | 17 | 304 | 3.39e-106 | 318 |
| MS.gene061389.t1 | AT3G01990 | 55.631 | 293 | 124 | 4 | 11 | 302 | 3 | 290 | 5.77e-106 | 317 |
| MS.gene061389.t1 | AT5G65890 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 4.29e-102 | 311 |
| MS.gene061389.t1 | AT5G65890 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 4.29e-102 | 311 |
| MS.gene061389.t1 | AT5G25320 | 43.169 | 366 | 169 | 8 | 10 | 337 | 9 | 373 | 4.50e-102 | 309 |
| MS.gene061389.t1 | AT5G65890 | 43.791 | 306 | 154 | 6 | 120 | 409 | 13 | 316 | 2.76e-83 | 261 |
| MS.gene061389.t1 | AT2G39570 | 23.229 | 353 | 246 | 11 | 37 | 371 | 21 | 366 | 2.67e-11 | 65.5 |
Find 84 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGATGGTGGATGGTTTA+TGG | 0.205537 | 7.1:-76445544 | MS.gene061389:CDS |
| TTTCATGTTACTGATCAAAA+TGG | 0.211096 | 7.1:-76445374 | MS.gene061389:CDS |
| TTCACTCTTAACTGGATTTC+CGG | 0.229487 | 7.1:+76443011 | None:intergenic |
| TCAATTGTTTCACTCTTAAC+TGG | 0.271268 | 7.1:+76443003 | None:intergenic |
| GGTGTAAAGCTCGAACTTTC+CGG | 0.271281 | 7.1:-76443162 | MS.gene061389:CDS |
| CAGAACAACAACTTTGATAA+AGG | 0.291767 | 7.1:-76445749 | MS.gene061389:intron |
| CCGCTACCACATTGCATTTG+AGG | 0.353645 | 7.1:+76444593 | None:intergenic |
| GTTGATGATTGCATCGATAA+AGG | 0.360000 | 7.1:-76444283 | MS.gene061389:CDS |
| GAGAGGTTTCTTTACAATCT+AGG | 0.372115 | 7.1:-76442862 | MS.gene061389:CDS |
| AATAGTAACTTCGGTCGATC+TGG | 0.375903 | 7.1:+76444235 | None:intergenic |
| CATACAACGATCGAGTTAAC+AGG | 0.410366 | 7.1:-76444664 | MS.gene061389:CDS |
| TGAAGGAACAGAAGCATATC+AGG | 0.414309 | 7.1:-76444152 | MS.gene061389:intron |
| AAGACTTCTGAAAGCAATCC+TGG | 0.415942 | 7.1:+76444631 | None:intergenic |
| CTTTCTGCTTCAGAACTGAT+TGG | 0.421013 | 7.1:+76443586 | None:intergenic |
| TCGAGTTAACAGGACGAGAT+AGG | 0.422142 | 7.1:-76444654 | MS.gene061389:CDS |
| TCTCTTTACGTGATCTCGTT+AGG | 0.425090 | 7.1:-76442894 | MS.gene061389:CDS |
| ATGTGGTAGCGGCTGAAGTC+TGG | 0.426365 | 7.1:-76444582 | MS.gene061389:CDS |
| CATAGAAAACATTCATGGCT+TGG | 0.432509 | 7.1:+76443046 | None:intergenic |
| TTCATGTTACTGATCAAAAT+GGG | 0.434204 | 7.1:-76445373 | MS.gene061389:CDS |
| TACATCACCGACGACACAAC+AGG | 0.443441 | 7.1:-76444529 | MS.gene061389:CDS |
| TTAATCTTGGCAAGGCGGTC+AGG | 0.450576 | 7.1:+76444490 | None:intergenic |
| GATCGGAAGCTACGGACTCT+TGG | 0.452011 | 7.1:+76444724 | None:intergenic |
| TGTCACATAGAAAACATTCA+TGG | 0.454766 | 7.1:+76443041 | None:intergenic |
| TGTAGCTGATAGAATTCAAC+AGG | 0.458713 | 7.1:-76445330 | MS.gene061389:intron |
| TCAATTGATGTATGCTGATC+GGG | 0.471630 | 7.1:-76444371 | MS.gene061389:CDS |
| CGGGATTATGACATATATGA+TGG | 0.473270 | 7.1:-76444352 | MS.gene061389:CDS |
| AAGCAGAAGATGCTTAATCT+TGG | 0.477322 | 7.1:+76444477 | None:intergenic |
| ATATTTCATCTGATGGTGGA+TGG | 0.481369 | 7.1:-76445551 | MS.gene061389:CDS |
| TAATAAACGTGGTAGTTTGT+TGG | 0.488332 | 7.1:-76445622 | MS.gene061389:CDS |
| ATAGAAAACATTCATGGCTT+GGG | 0.492504 | 7.1:+76443047 | None:intergenic |
| GCAAAGAGTAATTCACTGCT+TGG | 0.493494 | 7.1:-76443563 | MS.gene061389:CDS |
| GTACCTCAGAAGTTCGCCTT+CGG | 0.506198 | 7.1:+76443530 | None:intergenic |
| ACTCGCATCTTTAGAGAAAA+CGG | 0.512341 | 7.1:-76443108 | MS.gene061389:CDS |
| AGAGCTTATATTTCATCTGA+TGG | 0.514352 | 7.1:-76445558 | MS.gene061389:CDS |
| TTTGTTCGACTCACAAGGAT+AGG | 0.516487 | 7.1:-76444402 | MS.gene061389:CDS |
| AGGCTGTTCGAAAAGAGATC+GGG | 0.523994 | 7.1:-76442981 | MS.gene061389:CDS |
| GAGGCTGTTCGAAAAGAGAT+CGG | 0.525177 | 7.1:-76442982 | MS.gene061389:CDS |
| GATATACCGTCGTGAATTTG+AGG | 0.531940 | 7.1:-76444261 | MS.gene061389:CDS |
| GCTTGGAGGCTGCTGTCCGA+AGG | 0.534469 | 7.1:-76443546 | MS.gene061389:CDS |
| CGGCAATCCTGTTGTGTCGT+CGG | 0.534641 | 7.1:+76444522 | None:intergenic |
| TGCGAGTTACATCAGACAAA+AGG | 0.535705 | 7.1:+76443124 | None:intergenic |
| TTCTCACGGATCGGAAGCTA+CGG | 0.542549 | 7.1:+76444716 | None:intergenic |
| CTTCAGCATTGACAGTTCCA+TGG | 0.546213 | 7.1:+76444170 | None:intergenic |
| AAGAGTAATTCACTGCTTGG+AGG | 0.549558 | 7.1:-76443560 | MS.gene061389:CDS |
| CGCGCTGAGGTCACGACAAG+AGG | 0.553071 | 7.1:-76443072 | MS.gene061389:CDS |
| CCTCAAATGCAATGTGGTAG+CGG | 0.554458 | 7.1:-76444593 | MS.gene061389:CDS |
| CAATCAGTTCTGAAGCAGAA+AGG | 0.556036 | 7.1:-76443585 | MS.gene061389:CDS |
| TTCTATGTGACAGATGTGTC+CGG | 0.558668 | 7.1:-76443030 | MS.gene061389:CDS |
| CTGGACACACAATTCAAGAA+TGG | 0.562636 | 7.1:-76444563 | MS.gene061389:CDS |
| TTTCAAATTCATCATCAAGA+GGG | 0.563709 | 7.1:+76445944 | None:intergenic |
| CCTCAGCGCGGCAGACTGAA+AGG | 0.576827 | 7.1:+76443085 | None:intergenic |
| AAGGCCAACTCTGTCTTCAC+CGG | 0.577698 | 7.1:+76443143 | None:intergenic |
| GTTCGACTCACAAGGATAGG+AGG | 0.577855 | 7.1:-76444399 | MS.gene061389:CDS |
| TGTCCGAAGGCGAACTTCTG+AGG | 0.586828 | 7.1:-76443533 | MS.gene061389:intron |
| ATCAATTGATGTATGCTGAT+CGG | 0.588153 | 7.1:-76444372 | MS.gene061389:CDS |
| AAATCTCCTACCCGGAAGAG+TGG | 0.595105 | 7.1:-76442922 | MS.gene061389:CDS |
| ATCTGTCGGTGTTCAAGCTG+CGG | 0.596760 | 7.1:-76444692 | MS.gene061389:CDS |
| AGTTAAGAGTGAAACAATTG+AGG | 0.598247 | 7.1:-76443001 | MS.gene061389:CDS |
| TATTACATAAGGCATGTGGA+TGG | 0.599573 | 7.1:-76443613 | MS.gene061389:CDS |
| CATGCTTAAAATCTCCTACC+CGG | 0.604688 | 7.1:-76442930 | MS.gene061389:CDS |
| TAGATTGTAAAGAAACCTCT+CGG | 0.604791 | 7.1:+76442864 | None:intergenic |
| CCTTTCAGTCTGCCGCGCTG+AGG | 0.608957 | 7.1:-76443085 | MS.gene061389:CDS |
| CTTTCCGGTGAAGACAGAGT+TGG | 0.609309 | 7.1:-76443147 | MS.gene061389:CDS |
| TTAACAGGACGAGATAGGCC+AGG | 0.610170 | 7.1:-76444649 | MS.gene061389:CDS |
| CATGGAACTGTCAATGCTGA+AGG | 0.610676 | 7.1:-76444169 | MS.gene061389:CDS |
| CGACAGATCTTCTCACGGAT+CGG | 0.618439 | 7.1:+76444707 | None:intergenic |
| GCTTATATTTCATCTGATGG+TGG | 0.619057 | 7.1:-76445555 | MS.gene061389:CDS |
| AGGCGGTCAGGATTGTCGAT+CGG | 0.626180 | 7.1:+76444502 | None:intergenic |
| GGAATATTACATAAGGCATG+TGG | 0.628289 | 7.1:-76443617 | MS.gene061389:CDS |
| GATGGTGGATGGTTTATGGA+TGG | 0.634152 | 7.1:-76445540 | MS.gene061389:intron |
| GAAGATGCTTAATCTTGGCA+AGG | 0.637572 | 7.1:+76444482 | None:intergenic |
| AACACCGACAGATCTTCTCA+CGG | 0.646279 | 7.1:+76444702 | None:intergenic |
| CGATCCGTGAGAAGATCTGT+CGG | 0.650412 | 7.1:-76444706 | MS.gene061389:CDS |
| ACGGTATCGAATAGTAACTT+CGG | 0.652560 | 7.1:+76444226 | None:intergenic |
| CATGTCTGTGATAGTACACA+CGG | 0.656721 | 7.1:+76444207 | None:intergenic |
| CTTCTGCTTTATGTGCTGAG+AGG | 0.660385 | 7.1:-76444463 | MS.gene061389:CDS |
| ATGCAGTATGTTGTGTACCA+TGG | 0.674170 | 7.1:-76444187 | MS.gene061389:CDS |
| GATGCTTAATCTTGGCAAGG+CGG | 0.685591 | 7.1:+76444485 | None:intergenic |
| GTTGATAGTGCTAATAAACG+TGG | 0.727553 | 7.1:-76445633 | MS.gene061389:CDS |
| TGCTGACCTCAAATGCAATG+TGG | 0.737650 | 7.1:-76444599 | MS.gene061389:CDS |
| TGGACACCTCAAATTCACGA+CGG | 0.751563 | 7.1:+76444255 | None:intergenic |
| TCGTTAGGTCTAGATCCGAG+AGG | 0.757651 | 7.1:-76442879 | MS.gene061389:CDS |
| TAATTCGAATGAATCCACCA+AGG | 0.763307 | 7.1:-76445915 | MS.gene061389:intron |
| CTCTTGTCGTGACCTCAGCG+CGG | 0.773509 | 7.1:+76443073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATATTTTCTTATTTTAT+CGG | - | chr7.1:76443596-76443615 | MS.gene061389:CDS | 10.0% |
| !! | AAATGAAGAATTATTGTAAA+TGG | + | chr7.1:76443306-76443325 | None:intergenic | 15.0% |
| !! | AATCTTTGATTAATTTCAAA+AGG | - | chr7.1:76443108-76443127 | MS.gene061389:CDS | 15.0% |
| !! | ATCTTTGATTAATTTCAAAA+GGG | - | chr7.1:76443109-76443128 | MS.gene061389:CDS | 15.0% |
| !! | ATGAAAAACTGAAAAATAAA+AGG | + | chr7.1:76443419-76443438 | None:intergenic | 15.0% |
| !! | TTTCTCTCATTAATTATTTA+CGG | - | chr7.1:76445404-76445423 | MS.gene061389:intron | 15.0% |
| !!! | AGAATTTTTTTATATCAAGT+AGG | - | chr7.1:76444872-76444891 | MS.gene061389:intron | 15.0% |
| !!! | ATTTGTTATGATTGTAATTT+AGG | - | chr7.1:76443546-76443565 | MS.gene061389:CDS | 15.0% |
| !!! | TTTGAAATTTAAACCTTATA+AGG | - | chr7.1:76443081-76443100 | MS.gene061389:CDS | 15.0% |
| !! | AAGAGTAATATAAACTATCA+TGG | + | chr7.1:76443787-76443806 | None:intergenic | 20.0% |
| !! | TCAAAGATTATAACCTTATA+AGG | + | chr7.1:76443097-76443116 | None:intergenic | 20.0% |
| !!! | AGTTAACTTGTATTTGATAT+AGG | - | chr7.1:76445623-76445642 | MS.gene061389:CDS | 20.0% |
| !!! | CTTTTATATTGAGGTAAAAT+CGG | + | chr7.1:76443747-76443766 | None:intergenic | 20.0% |
| !!! | GATATTTTTAAAATACCGTT+CGG | + | chr7.1:76444784-76444803 | None:intergenic | 20.0% |
| !!! | GTATTTCATTTCAATTTGTT+TGG | - | chr7.1:76445070-76445089 | MS.gene061389:intron | 20.0% |
| !!! | GTTAACTTGTATTTGATATA+GGG | - | chr7.1:76445624-76445643 | MS.gene061389:CDS | 20.0% |
| !!! | TGTTTACTAATAACACTTTT+TGG | - | chr7.1:76444037-76444056 | MS.gene061389:intron | 20.0% |
| !!! | TTTTACAGGAATATTACATA+AGG | - | chr7.1:76445183-76445202 | MS.gene061389:intron | 20.0% |
| !!! | TTTTTTACTTTTGCTAAAAC+AGG | + | chr7.1:76445324-76445343 | None:intergenic | 20.0% |
| ! | AAAATGGACAAAATTAGCAA+AGG | + | chr7.1:76444901-76444920 | None:intergenic | 25.0% |
| ! | CTTGCATTTATCAATAAAGA+GGG | - | chr7.1:76445476-76445495 | MS.gene061389:intron | 25.0% |
| ! | GAAGAATTATTGTAAATGGT+AGG | + | chr7.1:76443302-76443321 | None:intergenic | 25.0% |
| ! | GTTATTAGTAAACAAAGTTC+TGG | + | chr7.1:76444031-76444050 | None:intergenic | 25.0% |
| ! | TACGCAAATATTAAGAAAAG+AGG | + | chr7.1:76445506-76445525 | None:intergenic | 25.0% |
| ! | TAGATCTGTGTAATATTCAT+CGG | - | chr7.1:76443503-76443522 | MS.gene061389:intron | 25.0% |
| ! | TGCTAAAACAGGTATTAATT+TGG | + | chr7.1:76445313-76445332 | None:intergenic | 25.0% |
| ! | TTAGTTACAAACTAGATACA+AGG | - | chr7.1:76444827-76444846 | MS.gene061389:intron | 25.0% |
| ! | TTCATGTTACTGATCAAAAT+GGG | - | chr7.1:76443434-76443453 | MS.gene061389:intron | 25.0% |
| ! | TTTAATGATAACTTGAGTGA+TGG | + | chr7.1:76445140-76445159 | None:intergenic | 25.0% |
| ! | TTTCAAATTCATCATCAAGA+GGG | + | chr7.1:76442866-76442885 | None:intergenic | 25.0% |
| ! | TTTCATGTTACTGATCAAAA+TGG | - | chr7.1:76443433-76443452 | MS.gene061389:intron | 25.0% |
| !! | AAACAGGTATTAATTTGGAA+CGG | + | chr7.1:76445308-76445327 | None:intergenic | 25.0% |
| !! | TCAATTTTCGTCATACTATT+CGG | - | chr7.1:76443834-76443853 | MS.gene061389:intron | 25.0% |
| !! | TGTGATCAACTTTTATATTG+AGG | + | chr7.1:76443756-76443775 | None:intergenic | 25.0% |
| !! | TTTTCAAATTCATCATCAAG+AGG | + | chr7.1:76442867-76442886 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAATTTTGTGT+AGG | - | chr7.1:76443152-76443171 | MS.gene061389:CDS | 25.0% |
| !!! | AAAAAAAAAAGCACTAGTTC+TGG | + | chr7.1:76443993-76444012 | None:intergenic | 25.0% |
| !!! | AACTAGTGCTTTTTTTTTTG+AGG | - | chr7.1:76443994-76444013 | MS.gene061389:intron | 25.0% |
| AGAGCTTATATTTCATCTGA+TGG | - | chr7.1:76443249-76443268 | MS.gene061389:intron | 30.0% | |
| AGATAAGCTCAAAATAAGTC+AGG | + | chr7.1:76444738-76444757 | None:intergenic | 30.0% | |
| AGTTAAGAGTGAAACAATTG+AGG | - | chr7.1:76445806-76445825 | MS.gene061389:intron | 30.0% | |
| ATAGAAAACATTCATGGCTT+GGG | + | chr7.1:76445763-76445782 | None:intergenic | 30.0% | |
| ATCAATTGATGTATGCTGAT+CGG | - | chr7.1:76444435-76444454 | MS.gene061389:CDS | 30.0% | |
| ATCATCCTATTCCAATCAAA+AGG | + | chr7.1:76443873-76443892 | None:intergenic | 30.0% | |
| CAAATTCGATCATTCTATCA+GGG | - | chr7.1:76444938-76444957 | MS.gene061389:intron | 30.0% | |
| CAGAACAACAACTTTGATAA+AGG | - | chr7.1:76443058-76443077 | MS.gene061389:CDS | 30.0% | |
| GATGTGTTAGAATGATAAAG+CGG | + | chr7.1:76445363-76445382 | None:intergenic | 30.0% | |
| GCTTGCATTTATCAATAAAG+AGG | - | chr7.1:76445475-76445494 | MS.gene061389:intron | 30.0% | |
| TAGATTGTAAAGAAACCTCT+CGG | + | chr7.1:76445946-76445965 | None:intergenic | 30.0% | |
| TCAAATTCGATCATTCTATC+AGG | - | chr7.1:76444937-76444956 | MS.gene061389:intron | 30.0% | |
| TCAATTGTTTCACTCTTAAC+TGG | + | chr7.1:76445807-76445826 | None:intergenic | 30.0% | |
| TGTCACATAGAAAACATTCA+TGG | + | chr7.1:76445769-76445788 | None:intergenic | 30.0% | |
| TTTGTCACTAAAAATACCGA+TGG | + | chr7.1:76445604-76445623 | None:intergenic | 30.0% | |
| ! | TAATAAACGTGGTAGTTTGT+TGG | - | chr7.1:76443185-76443204 | MS.gene061389:intron | 30.0% |
| !! | TGAACATGTTTTTGTTACCT+TGG | + | chr7.1:76442912-76442931 | None:intergenic | 30.0% |
| !!! | TGTGTTTTGCTTTGTTTTAC+AGG | - | chr7.1:76445169-76445188 | MS.gene061389:intron | 30.0% |
| !!! | TTCACAACTTTTTTTGCCAT+CGG | - | chr7.1:76445585-76445604 | MS.gene061389:CDS | 30.0% |
| AAAGAAGATGTTAAGCCGAA+CGG | - | chr7.1:76444766-76444785 | MS.gene061389:intron | 35.0% | |
| AAGCAGAAGATGCTTAATCT+TGG | + | chr7.1:76444333-76444352 | None:intergenic | 35.0% | |
| AAGCATATTTCCATGATTCC+CGG | - | chr7.1:76443650-76443669 | MS.gene061389:intron | 35.0% | |
| CATAGAAAACATTCATGGCT+TGG | + | chr7.1:76445764-76445783 | None:intergenic | 35.0% | |
| CGGGATTATGACATATATGA+TGG | - | chr7.1:76444455-76444474 | MS.gene061389:CDS | 35.0% | |
| CTATTCCAATCAAAAGGCAA+TGG | + | chr7.1:76443867-76443886 | None:intergenic | 35.0% | |
| GAGAGGTTTCTTTACAATCT+AGG | - | chr7.1:76445945-76445964 | MS.gene061389:CDS | 35.0% | |
| GCTTATATTTCATCTGATGG+TGG | - | chr7.1:76443252-76443271 | MS.gene061389:intron | 35.0% | |
| GGAATATTACATAAGGCATG+TGG | - | chr7.1:76445190-76445209 | MS.gene061389:intron | 35.0% | |
| GTCATTCATGTTCTTGCAAT+TGG | - | chr7.1:76444681-76444700 | MS.gene061389:CDS | 35.0% | |
| TAATTCGAATGAATCCACCA+AGG | - | chr7.1:76442892-76442911 | MS.gene061389:CDS | 35.0% | |
| TATTACATAAGGCATGTGGA+TGG | - | chr7.1:76445194-76445213 | MS.gene061389:intron | 35.0% | |
| TCAATTGATGTATGCTGATC+GGG | - | chr7.1:76444436-76444455 | MS.gene061389:CDS | 35.0% | |
| TGTAGCTGATAGAATTCAAC+AGG | - | chr7.1:76443477-76443496 | MS.gene061389:intron | 35.0% | |
| TGTGAGTACTACATATGACA+TGG | - | chr7.1:76445555-76445574 | MS.gene061389:CDS | 35.0% | |
| TTCACTCTTAACTGGATTTC+CGG | + | chr7.1:76445799-76445818 | None:intergenic | 35.0% | |
| ! | AAGAGAATTTTCCACTCTTC+CGG | + | chr7.1:76445899-76445918 | None:intergenic | 35.0% |
| ! | ACGGTATCGAATAGTAACTT+CGG | + | chr7.1:76444584-76444603 | None:intergenic | 35.0% |
| ! | ACTCGCATCTTTAGAGAAAA+CGG | - | chr7.1:76445699-76445718 | MS.gene061389:intron | 35.0% |
| ! | AGGTATTAATTTGGAACGGA+GGG | + | chr7.1:76445304-76445323 | None:intergenic | 35.0% |
| ! | ATTTTGTGACAGAGTAACTG+TGG | - | chr7.1:76443022-76443041 | MS.gene061389:CDS | 35.0% |
| ! | CCTTAAAACGACTGTTGATT+TGG | - | chr7.1:76445530-76445549 | MS.gene061389:intron | 35.0% |
| ! | CGGCTTAACATCTTCTTTTA+AGG | + | chr7.1:76444764-76444783 | None:intergenic | 35.0% |
| ! | TTTAGCCATTGCCTTTTGAT+TGG | - | chr7.1:76443859-76443878 | MS.gene061389:intron | 35.0% |
| !! | ACATGTTTTTGTTACCTTGG+TGG | + | chr7.1:76442909-76442928 | None:intergenic | 35.0% |
| !! | ATATTTCATCTGATGGTGGA+TGG | - | chr7.1:76443256-76443275 | MS.gene061389:intron | 35.0% |
| !! | CATTGCCTTTTGATTGGAAT+AGG | - | chr7.1:76443865-76443884 | MS.gene061389:intron | 35.0% |
| !! | CCAAATCAACAGTCGTTTTA+AGG | + | chr7.1:76445533-76445552 | None:intergenic | 35.0% |
| !! | GTTGATAGTGCTAATAAACG+TGG | - | chr7.1:76443174-76443193 | MS.gene061389:intron | 35.0% |
| !! | GTTGATGATTGCATCGATAA+AGG | - | chr7.1:76444524-76444543 | MS.gene061389:CDS | 35.0% |
| AAGAGTAATTCACTGCTTGG+AGG | - | chr7.1:76445247-76445266 | MS.gene061389:intron | 40.0% | |
| AATAGTAACTTCGGTCGATC+TGG | + | chr7.1:76444575-76444594 | None:intergenic | 40.0% | |
| ATGCAGTATGTTGTGTACCA+TGG | - | chr7.1:76444620-76444639 | MS.gene061389:CDS | 40.0% | |
| CATACAACGATCGAGTTAAC+AGG | - | chr7.1:76444143-76444162 | MS.gene061389:intron | 40.0% | |
| CATGCTTAAAATCTCCTACC+CGG | - | chr7.1:76445877-76445896 | MS.gene061389:intron | 40.0% | |
| CATGTCTGTGATAGTACACA+CGG | + | chr7.1:76444603-76444622 | None:intergenic | 40.0% | |
| CTGGACACACAATTCAAGAA+TGG | - | chr7.1:76444244-76444263 | MS.gene061389:CDS | 40.0% | |
| CTTTCTGCTTCAGAACTGAT+TGG | + | chr7.1:76445224-76445243 | None:intergenic | 40.0% | |
| GAAGATGCTTAATCTTGGCA+AGG | + | chr7.1:76444328-76444347 | None:intergenic | 40.0% | |
| GATATACCGTCGTGAATTTG+AGG | - | chr7.1:76444546-76444565 | MS.gene061389:CDS | 40.0% | |
| GCAAAGAGTAATTCACTGCT+TGG | - | chr7.1:76445244-76445263 | MS.gene061389:intron | 40.0% | |
| TAGAAAGGATGCGTCAGAAT+AGG | + | chr7.1:76445104-76445123 | None:intergenic | 40.0% | |
| TCTCTTTACGTGATCTCGTT+AGG | - | chr7.1:76445913-76445932 | MS.gene061389:intron | 40.0% | |
| TGAGGTAAAATCGGCAAATG+TGG | + | chr7.1:76443738-76443757 | None:intergenic | 40.0% | |
| TGCGAGTTACATCAGACAAA+AGG | + | chr7.1:76445686-76445705 | None:intergenic | 40.0% | |
| TTCTATGTGACAGATGTGTC+CGG | - | chr7.1:76445777-76445796 | MS.gene061389:intron | 40.0% | |
| TTTGTTCGACTCACAAGGAT+AGG | - | chr7.1:76444405-76444424 | MS.gene061389:CDS | 40.0% | |
| ! | AAGACTTCTGAAAGCAATCC+TGG | + | chr7.1:76444179-76444198 | None:intergenic | 40.0% |
| ! | AGAGAATTTTCCACTCTTCC+GGG | + | chr7.1:76445898-76445917 | None:intergenic | 40.0% |
| ! | CAGGTATTAATTTGGAACGG+AGG | + | chr7.1:76445305-76445324 | None:intergenic | 40.0% |
| ! | GTTTTCTTGTTCCAGTCACT+CGG | - | chr7.1:76444059-76444078 | MS.gene061389:intron | 40.0% |
| ! | TGAAGGAACAGAAGCATATC+AGG | - | chr7.1:76444655-76444674 | MS.gene061389:CDS | 40.0% |
| !! | ATCTGATGGTGGATGGTTTA+TGG | - | chr7.1:76443263-76443282 | MS.gene061389:intron | 40.0% |
| !! | CAATCAGTTCTGAAGCAGAA+AGG | - | chr7.1:76445222-76445241 | MS.gene061389:intron | 40.0% |
| !! | TTCGTTTTGTTCGACTCACA+AGG | - | chr7.1:76444400-76444419 | MS.gene061389:CDS | 40.0% |
| AACACCGACAGATCTTCTCA+CGG | + | chr7.1:76444108-76444127 | None:intergenic | 45.0% | |
| AGGCTGTTCGAAAAGAGATC+GGG | - | chr7.1:76445826-76445845 | MS.gene061389:intron | 45.0% | |
| CATGGAACTGTCAATGCTGA+AGG | - | chr7.1:76444638-76444657 | MS.gene061389:CDS | 45.0% | |
| CCTCAAATGCAATGTGGTAG+CGG | - | chr7.1:76444214-76444233 | MS.gene061389:CDS | 45.0% | |
| CTTCTGCTTTATGTGCTGAG+AGG | - | chr7.1:76444344-76444363 | MS.gene061389:CDS | 45.0% | |
| GAGGCTGTTCGAAAAGAGAT+CGG | - | chr7.1:76445825-76445844 | MS.gene061389:intron | 45.0% | |
| GATGCTTAATCTTGGCAAGG+CGG | + | chr7.1:76444325-76444344 | None:intergenic | 45.0% | |
| GGACTCATAAGCTGGTAGAA+AGG | + | chr7.1:76445119-76445138 | None:intergenic | 45.0% | |
| GGTGTAAAGCTCGAACTTTC+CGG | - | chr7.1:76445645-76445664 | MS.gene061389:intron | 45.0% | |
| TCGAGTTAACAGGACGAGAT+AGG | - | chr7.1:76444153-76444172 | MS.gene061389:CDS | 45.0% | |
| TGCAAGCTCGATAATGTCGT+TGG | + | chr7.1:76445462-76445481 | None:intergenic | 45.0% | |
| TGCTGACCTCAAATGCAATG+TGG | - | chr7.1:76444208-76444227 | MS.gene061389:CDS | 45.0% | |
| TGGACACCTCAAATTCACGA+CGG | + | chr7.1:76444555-76444574 | None:intergenic | 45.0% | |
| ! | AATTTTCCACTCTTCCGGGT+AGG | + | chr7.1:76445894-76445913 | None:intergenic | 45.0% |
| ! | CGGGTAGGAGATTTTAAGCA+TGG | + | chr7.1:76445879-76445898 | None:intergenic | 45.0% |
| !! | CTTCAGCATTGACAGTTCCA+TGG | + | chr7.1:76444640-76444659 | None:intergenic | 45.0% |
| !! | GATGGTGGATGGTTTATGGA+TGG | - | chr7.1:76443267-76443286 | MS.gene061389:intron | 45.0% |
| !! | TGAGTGATGGACTCATAAGC+TGG | + | chr7.1:76445127-76445146 | None:intergenic | 45.0% |
| !! | AAAAAATATTAAAAAAACAA+TGG | + | chr7.1:76443349-76443368 | None:intergenic | 5.0% |
| !! | GTTAAATATTAATAATAAAA+TGG | + | chr7.1:76444917-76444936 | None:intergenic | 5.0% |
| AAATCTCCTACCCGGAAGAG+TGG | - | chr7.1:76445885-76445904 | MS.gene061389:intron | 50.0% | |
| AAGGCCAACTCTGTCTTCAC+CGG | + | chr7.1:76445667-76445686 | None:intergenic | 50.0% | |
| CCGCTACCACATTGCATTTG+AGG | + | chr7.1:76444217-76444236 | None:intergenic | 50.0% | |
| CGACAGATCTTCTCACGGAT+CGG | + | chr7.1:76444103-76444122 | None:intergenic | 50.0% | |
| CGATCCGTGAGAAGATCTGT+CGG | - | chr7.1:76444101-76444120 | MS.gene061389:intron | 50.0% | |
| CTTTCCGGTGAAGACAGAGT+TGG | - | chr7.1:76445660-76445679 | MS.gene061389:intron | 50.0% | |
| GTACCTCAGAAGTTCGCCTT+CGG | + | chr7.1:76445280-76445299 | None:intergenic | 50.0% | |
| GTTCGACTCACAAGGATAGG+AGG | - | chr7.1:76444408-76444427 | MS.gene061389:CDS | 50.0% | |
| TACATCACCGACGACACAAC+AGG | - | chr7.1:76444278-76444297 | MS.gene061389:CDS | 50.0% | |
| TCGTTAGGTCTAGATCCGAG+AGG | - | chr7.1:76445928-76445947 | MS.gene061389:CDS | 50.0% | |
| TTAACAGGACGAGATAGGCC+AGG | - | chr7.1:76444158-76444177 | MS.gene061389:CDS | 50.0% | |
| TTAATCTTGGCAAGGCGGTC+AGG | + | chr7.1:76444320-76444339 | None:intergenic | 50.0% | |
| TTCTCACGGATCGGAAGCTA+CGG | + | chr7.1:76444094-76444113 | None:intergenic | 50.0% | |
| ! | AGACCGATTTATTGCTGCCG+CGG | + | chr7.1:76443677-76443696 | None:intergenic | 50.0% |
| ! | ATCTGTCGGTGTTCAAGCTG+CGG | - | chr7.1:76444115-76444134 | MS.gene061389:intron | 50.0% |
| AGGCGGTCAGGATTGTCGAT+CGG | + | chr7.1:76444308-76444327 | None:intergenic | 55.0% | |
| ATTTATTGCTGCCGCGGACC+GGG | + | chr7.1:76443671-76443690 | None:intergenic | 55.0% | |
| CGACATCGCAACCGCAATTG+CGG | - | chr7.1:76443712-76443731 | MS.gene061389:intron | 55.0% | |
| CGGCAATCCTGTTGTGTCGT+CGG | + | chr7.1:76444288-76444307 | None:intergenic | 55.0% | |
| GATCGGAAGCTACGGACTCT+TGG | + | chr7.1:76444086-76444105 | None:intergenic | 55.0% | |
| GATTTATTGCTGCCGCGGAC+CGG | + | chr7.1:76443672-76443691 | None:intergenic | 55.0% | |
| GGCAAATGTGGCCGCAATTG+CGG | + | chr7.1:76443726-76443745 | None:intergenic | 55.0% | |
| GGTCCGCGGCAGCAATAAAT+CGG | - | chr7.1:76443671-76443690 | MS.gene061389:intron | 55.0% | |
| TGTCCGAAGGCGAACTTCTG+AGG | - | chr7.1:76445274-76445293 | MS.gene061389:intron | 55.0% | |
| TTTCCATGATTCCCGGTCCG+CGG | - | chr7.1:76443657-76443676 | MS.gene061389:intron | 55.0% | |
| !! | ATGTGGTAGCGGCTGAAGTC+TGG | - | chr7.1:76444225-76444244 | MS.gene061389:CDS | 55.0% |
| CTCTTGTCGTGACCTCAGCG+CGG | + | chr7.1:76445737-76445756 | None:intergenic | 60.0% | |
| GGACTCTTGGACCGAGTGAC+TGG | + | chr7.1:76444073-76444092 | None:intergenic | 60.0% | |
| CCTCAGCGCGGCAGACTGAA+AGG | + | chr7.1:76445725-76445744 | None:intergenic | 65.0% | |
| CCTTTCAGTCTGCCGCGCTG+AGG | - | chr7.1:76445722-76445741 | MS.gene061389:intron | 65.0% | |
| CGCGCTGAGGTCACGACAAG+AGG | - | chr7.1:76445735-76445754 | MS.gene061389:intron | 65.0% | |
| GCTTGGAGGCTGCTGTCCGA+AGG | - | chr7.1:76445261-76445280 | MS.gene061389:intron | 65.0% | |
| CTGCCGCGGACCGGGAATCA+TGG | + | chr7.1:76443663-76443682 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 76442840 | 76445989 | 76442840 | ID=MS.gene061389 |
| chr7.1 | mRNA | 76442840 | 76445989 | 76442840 | ID=MS.gene061389.t1;Parent=MS.gene061389 |
| chr7.1 | exon | 76445916 | 76445989 | 76445916 | ID=MS.gene061389.t1.exon1;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76445916 | 76445989 | 76445916 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| chr7.1 | exon | 76445750 | 76445795 | 76445750 | ID=MS.gene061389.t1.exon2;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76445750 | 76445795 | 76445750 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| chr7.1 | exon | 76445541 | 76445655 | 76445541 | ID=MS.gene061389.t1.exon3;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76445541 | 76445655 | 76445541 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| chr7.1 | exon | 76445331 | 76445398 | 76445331 | ID=MS.gene061389.t1.exon4;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76445331 | 76445398 | 76445331 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| chr7.1 | exon | 76444153 | 76444755 | 76444153 | ID=MS.gene061389.t1.exon5;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76444153 | 76444755 | 76444153 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| chr7.1 | exon | 76443534 | 76443638 | 76443534 | ID=MS.gene061389.t1.exon6;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76443534 | 76443638 | 76443534 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| chr7.1 | exon | 76442840 | 76443184 | 76442840 | ID=MS.gene061389.t1.exon7;Parent=MS.gene061389.t1 |
| chr7.1 | CDS | 76442840 | 76443184 | 76442840 | ID=cds.MS.gene061389.t1;Parent=MS.gene061389.t1 |
| Gene Sequence |
| Protein sequence |
