Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061390.t1 | XP_003621758.1 | 92.8 | 250 | 18 | 0 | 1 | 250 | 92 | 341 | 4.40E-134 | 487.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061390.t1 | G7KUS9 | 92.8 | 250 | 18 | 0 | 1 | 250 | 92 | 341 | 3.2e-134 | 487.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene061390 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene061390 | 0.819618 | 1.06E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene061390 | 0.803396 | 3.56E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene061390 | -0.817647 | 2.96E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene061390 | 0.813735 | 2.20E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene061390 | 0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene061390 | 0.831102 | 2.02E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene061390 | 0.801704 | 7.94E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene061390 | 0.818516 | 1.88E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene061390 | 0.824946 | 6.13E-54 | -1.69E-46 |
| MS.gene05594 | MS.gene061390 | 0.846191 | 2.54E-59 | -1.69E-46 |
| MS.gene056723 | MS.gene061390 | 0.82436 | 8.42E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene061390 | 0.807848 | 4.14E-50 | -1.69E-46 |
| MS.gene059082 | MS.gene061390 | 0.801855 | 7.39E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene061390 | 0.849786 | 2.59E-60 | -1.69E-46 |
| MS.gene059504 | MS.gene061390 | 0.809676 | 1.68E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061390.t1 | MTR_7g022480 | 94.800 | 250 | 13 | 0 | 1 | 250 | 92 | 341 | 2.78e-180 | 498 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061390.t1 | AT2G35450 | 75.309 | 243 | 60 | 0 | 1 | 243 | 100 | 342 | 1.25e-137 | 391 |
Find 53 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCAAATTTATGATTAAT+TGG | 0.189298 | 7.1:+76424922 | None:intergenic |
| TCACCAGATGGCCACAAATA+AGG | 0.211375 | 7.1:+76424067 | None:intergenic |
| AAGAACACCATTTCCTTATC+TGG | 0.226112 | 7.1:-76422019 | MS.gene061390:CDS |
| AATAAGCTGCACTGCTTCTT+TGG | 0.236695 | 7.1:+76421799 | None:intergenic |
| AAGACAACAACCAACAAATT+TGG | 0.243008 | 7.1:+76424372 | None:intergenic |
| GCTCCTTTGTATCCACATTC+AGG | 0.303822 | 7.1:+76421821 | None:intergenic |
| TTGCAGATGACAAATGAAAT+AGG | 0.323712 | 7.1:-76423584 | MS.gene061390:intron |
| CACCAGATGGCCACAAATAA+GGG | 0.329823 | 7.1:+76424068 | None:intergenic |
| TCCCAACTTGTCTCTAGCTT+TGG | 0.332579 | 7.1:-76421979 | MS.gene061390:CDS |
| TGTGCACAATTGCTCAATTT+CGG | 0.364529 | 7.1:+76423008 | None:intergenic |
| CCACATTCAGGAACAACAAA+TGG | 0.375048 | 7.1:+76421833 | None:intergenic |
| AAATATCCAACCAAATTTGT+TGG | 0.375454 | 7.1:-76424382 | MS.gene061390:CDS |
| AACCCTTATTTGTGGCCATC+TGG | 0.376692 | 7.1:-76424070 | MS.gene061390:CDS |
| TTAGATTCAACCCTTATTTG+TGG | 0.394657 | 7.1:-76424078 | MS.gene061390:CDS |
| AGTTGTATTGCTTGATCACT+TGG | 0.396161 | 7.1:-76422971 | MS.gene061390:CDS |
| CTTGCTTAGCAGCAGTCAAC+TGG | 0.412780 | 7.1:+76421702 | None:intergenic |
| TCAAGCAATACAACTGTAGA+TGG | 0.433653 | 7.1:+76422979 | None:intergenic |
| ATGGAGGAAGCAGGAGTAGA+TGG | 0.448372 | 7.1:-76424961 | MS.gene061390:CDS |
| TCTAGATAGATTTAAAAGCT+TGG | 0.465053 | 7.1:+76422835 | None:intergenic |
| CCATTTGTTGTTCCTGAATG+TGG | 0.466806 | 7.1:-76421833 | MS.gene061390:CDS |
| GACAAATCCAGATAAGGAAA+TGG | 0.475732 | 7.1:+76422012 | None:intergenic |
| TGCCTTCTTCTGATTTAGAG+TGG | 0.476878 | 7.1:-76421760 | MS.gene061390:CDS |
| TTCTGATTTAGAGTGGATCA+TGG | 0.480955 | 7.1:-76421753 | MS.gene061390:CDS |
| AGCCCGCTTCCATCATCAGC+TGG | 0.481787 | 7.1:+76424343 | None:intergenic |
| TTTGTGGCCATCTGGTGAAA+AGG | 0.482600 | 7.1:-76424062 | MS.gene061390:intron |
| TTACAATGGTGGTTTGCAAA+AGG | 0.487795 | 7.1:+76422948 | None:intergenic |
| CACCAAAGCTAGAGACAAGT+TGG | 0.491047 | 7.1:+76421977 | None:intergenic |
| CACATTCAGGAACAACAAAT+GGG | 0.505338 | 7.1:+76421834 | None:intergenic |
| CTTGCTAATCCAGCTGATGA+TGG | 0.508137 | 7.1:-76424352 | MS.gene061390:CDS |
| GTTTGAACATCTTGTTCTCA+AGG | 0.510608 | 7.1:-76424314 | MS.gene061390:intron |
| CAACAACCAACAAATTTGGT+TGG | 0.514580 | 7.1:+76424376 | None:intergenic |
| GCTAAGCAAGATTCTGATTG+AGG | 0.521983 | 7.1:-76421689 | None:intergenic |
| ATCCACTCTAAATCAGAAGA+AGG | 0.538612 | 7.1:+76421758 | None:intergenic |
| TGGTGCTAATCGTGTAATGT+GGG | 0.541348 | 7.1:-76421959 | MS.gene061390:CDS |
| TCTGATTTAGAGTGGATCAT+GGG | 0.542498 | 7.1:-76421752 | MS.gene061390:CDS |
| TTGCAGCGTATGGAGGAAGC+AGG | 0.552048 | 7.1:-76424970 | None:intergenic |
| CTAATCGTGTAATGTGGGGC+AGG | 0.555996 | 7.1:-76421954 | MS.gene061390:intron |
| AGAGGAGACAAATCCAGATA+AGG | 0.564817 | 7.1:+76422006 | None:intergenic |
| TTGGTGCTAATCGTGTAATG+TGG | 0.566808 | 7.1:-76421960 | MS.gene061390:CDS |
| ATCCAGCTGATGATGGAAGC+GGG | 0.567449 | 7.1:-76424345 | MS.gene061390:CDS |
| AGTTGGCTTCATGTGTATGA+AGG | 0.568814 | 7.1:-76423522 | MS.gene061390:intron |
| GGGGAACTCAATGTAGCAGT+TGG | 0.572576 | 7.1:-76423539 | MS.gene061390:CDS |
| AATCCAGCTGATGATGGAAG+CGG | 0.572971 | 7.1:-76424346 | MS.gene061390:CDS |
| TGCAAAATAGCTTACAATGG+TGG | 0.577623 | 7.1:+76422937 | None:intergenic |
| ACCAAAGCTAGAGACAAGTT+GGG | 0.579274 | 7.1:+76421978 | None:intergenic |
| GAGACAAGTTGGGACAAGAG+AGG | 0.640446 | 7.1:+76421988 | None:intergenic |
| TCTAAATCAGAAGAAGGCAA+AGG | 0.644232 | 7.1:+76421764 | None:intergenic |
| TGTTGCAGAAATGACGAGGA+AGG | 0.652322 | 7.1:-76422869 | MS.gene061390:intron |
| TTGATCATAGTTATGTCACA+AGG | 0.666392 | 7.1:-76424906 | MS.gene061390:intron |
| AAGGGTTGAATCTAACAGCA+CGG | 0.668242 | 7.1:+76424086 | None:intergenic |
| GTTCCTGAATGTGGATACAA+AGG | 0.684501 | 7.1:-76421824 | MS.gene061390:CDS |
| ACTATGTTGCAGAAATGACG+AGG | 0.702143 | 7.1:-76422873 | MS.gene061390:intron |
| GGTGCTAATCGTGTAATGTG+GGG | 0.737093 | 7.1:-76421958 | MS.gene061390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAACAAAAATAAAATAA+AGG | - | chr7.1:76421907-76421926 | MS.gene061390:intron | 10.0% |
| !! | TTTGTAATTAATAAATCTAT+TGG | - | chr7.1:76422708-76422727 | MS.gene061390:intron | 10.0% |
| !!! | TATATTTTGATATACTAATA+GGG | + | chr7.1:76423399-76423418 | None:intergenic | 10.0% |
| !!! | TTATATTTTGATATACTAAT+AGG | + | chr7.1:76423400-76423419 | None:intergenic | 10.0% |
| !! | TCGATAATAATTTAAACAAA+TGG | + | chr7.1:76422428-76422447 | None:intergenic | 15.0% |
| !! | TGATCAAATTTATGATTAAT+TGG | + | chr7.1:76421733-76421752 | None:intergenic | 15.0% |
| !! | TTCTCATGATTAAAATAAAA+GGG | + | chr7.1:76423168-76423187 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGTTTGAAT+TGG | + | chr7.1:76423249-76423268 | None:intergenic | 15.0% |
| !!! | TATATTAATTACTTGTTTTG+AGG | + | chr7.1:76423319-76423338 | None:intergenic | 15.0% |
| !!! | TTAATTTTCTTATAACATCA+TGG | - | chr7.1:76423893-76423912 | MS.gene061390:intron | 15.0% |
| !!! | TTATATTACTTTGATTAGTT+AGG | - | chr7.1:76422682-76422701 | MS.gene061390:intron | 15.0% |
| !! | AAATTTGAATTTATGATGAC+AGG | - | chr7.1:76424576-76424595 | MS.gene061390:intron | 20.0% |
| !! | AGATCATTTGAATATAAATC+AGG | + | chr7.1:76423046-76423065 | None:intergenic | 20.0% |
| !! | ATAAAAGATTGCAATTACTT+TGG | + | chr7.1:76424353-76424372 | None:intergenic | 20.0% |
| !! | ATACAGTAAAAATAGGAAAA+AGG | - | chr7.1:76424729-76424748 | MS.gene061390:intron | 20.0% |
| !! | GTTCTCATGATTAAAATAAA+AGG | + | chr7.1:76423169-76423188 | None:intergenic | 20.0% |
| !! | TACAGTAAAAATAGGAAAAA+GGG | - | chr7.1:76424730-76424749 | MS.gene061390:intron | 20.0% |
| !! | TCTCATGATTAAAATAAAAG+GGG | + | chr7.1:76423167-76423186 | None:intergenic | 20.0% |
| !! | TGAATGTAAAACATGATAAA+AGG | - | chr7.1:76424122-76424141 | MS.gene061390:intron | 20.0% |
| !! | TGCAATTAACAAAATAATCT+AGG | + | chr7.1:76423866-76423885 | None:intergenic | 20.0% |
| !! | TTATAGGCTTCATTATTTAA+GGG | + | chr7.1:76424388-76424407 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTAGCTATGT+CGG | - | chr7.1:76424031-76424050 | MS.gene061390:intron | 20.0% |
| !!! | AATAAGTTGAATAATTTCAG+GGG | - | chr7.1:76423605-76423624 | MS.gene061390:intron | 20.0% |
| !!! | CAATAAGTTGAATAATTTCA+GGG | - | chr7.1:76423604-76423623 | MS.gene061390:intron | 20.0% |
| !!! | GTGATTGTTTTCTTTTTATT+TGG | - | chr7.1:76422530-76422549 | MS.gene061390:intron | 20.0% |
| !!! | TCAATAAGTTGAATAATTTC+AGG | - | chr7.1:76423603-76423622 | MS.gene061390:intron | 20.0% |
| !!! | TTTTTCCTATTTTTACTGTA+TGG | + | chr7.1:76424730-76424749 | None:intergenic | 20.0% |
| ! | AAATATCCAACCAAATTTGT+TGG | - | chr7.1:76422270-76422289 | MS.gene061390:intron | 25.0% |
| ! | AACTTCCATACAGTAAAAAT+AGG | - | chr7.1:76424722-76424741 | MS.gene061390:intron | 25.0% |
| ! | AAGTGATTTGAATGTAAAAG+TGG | + | chr7.1:76423223-76423242 | None:intergenic | 25.0% |
| ! | ATATAAATGCATGTTTGGAA+TGG | + | chr7.1:76422869-76422888 | None:intergenic | 25.0% |
| ! | ATTAATTTAACTGACGAAGT+AGG | - | chr7.1:76423480-76423499 | MS.gene061390:intron | 25.0% |
| ! | CTGAACTTATTCATAAGAAA+AGG | + | chr7.1:76422975-76422994 | None:intergenic | 25.0% |
| ! | CTTATAGGCTTCATTATTTA+AGG | + | chr7.1:76424389-76424408 | None:intergenic | 25.0% |
| ! | GACATTTCAGTATTATCTAA+CGG | + | chr7.1:76422126-76422145 | None:intergenic | 25.0% |
| ! | TCTAGATAGATTTAAAAGCT+TGG | + | chr7.1:76423820-76423839 | None:intergenic | 25.0% |
| ! | TGATTGTCTCAAATTAATAC+CGG | - | chr7.1:76424511-76424530 | MS.gene061390:intron | 25.0% |
| ! | TGGATTGAACAATAAATTCA+AGG | + | chr7.1:76423203-76423222 | None:intergenic | 25.0% |
| ! | TTATTCATAAGAAAAGGTCT+TGG | + | chr7.1:76422969-76422988 | None:intergenic | 25.0% |
| ! | TTCTTATGAATAAGTTCAGA+TGG | - | chr7.1:76422976-76422995 | MS.gene061390:CDS | 25.0% |
| !! | AGGAAAGACAATTTTCAAAA+GGG | - | chr7.1:76423088-76423107 | MS.gene061390:intron | 25.0% |
| !! | AGTTGATATAAATGCATGTT+TGG | + | chr7.1:76422874-76422893 | None:intergenic | 25.0% |
| !! | ATTCATATAAATTTGTTCGC+TGG | - | chr7.1:76422233-76422252 | MS.gene061390:intron | 25.0% |
| !! | TAGGAAAGACAATTTTCAAA+AGG | - | chr7.1:76423087-76423106 | MS.gene061390:intron | 25.0% |
| !! | TTCTCAAATTATTGCTATTG+TGG | - | chr7.1:76424275-76424294 | MS.gene061390:intron | 25.0% |
| !! | TTTTGCATTCTTTCTTTCAA+AGG | - | chr7.1:76423731-76423750 | MS.gene061390:intron | 25.0% |
| !!! | GTTTTCTTTTTATTTGGCTT+AGG | - | chr7.1:76422536-76422555 | MS.gene061390:intron | 25.0% |
| AAGACAACAACCAACAAATT+TGG | + | chr7.1:76422283-76422302 | None:intergenic | 30.0% | |
| AATAACTATTAGTTCCAGCA+TGG | + | chr7.1:76422213-76422232 | None:intergenic | 30.0% | |
| AATATACTGAAAGCAGCTTA+TGG | - | chr7.1:76421989-76422008 | MS.gene061390:CDS | 30.0% | |
| ACGAATAAACATCATAGGAA+GGG | - | chr7.1:76422897-76422916 | MS.gene061390:intron | 30.0% | |
| ACTAATAGGGACTAATCAAA+CGG | + | chr7.1:76423386-76423405 | None:intergenic | 30.0% | |
| AGATTGCAATTACTTTGGTA+AGG | + | chr7.1:76424348-76424367 | None:intergenic | 30.0% | |
| CTTACACGAATAAACATCAT+AGG | - | chr7.1:76422892-76422911 | MS.gene061390:intron | 30.0% | |
| GAATGCAAAATAGCTTACAA+TGG | + | chr7.1:76423721-76423740 | None:intergenic | 30.0% | |
| GACAAAAAATTGATCCAGAA+GGG | + | chr7.1:76423024-76423043 | None:intergenic | 30.0% | |
| GATAATACTGAAATGTCAGT+AGG | - | chr7.1:76422129-76422148 | MS.gene061390:intron | 30.0% | |
| GTTCCAACAAATGTAAACAA+GGG | + | chr7.1:76423579-76423598 | None:intergenic | 30.0% | |
| GTTGTGCTTATTTAGATTGA+CGG | - | chr7.1:76422750-76422769 | MS.gene061390:intron | 30.0% | |
| TACGTGTATTAGTGTCTTAT+CGG | + | chr7.1:76422388-76422407 | None:intergenic | 30.0% | |
| TATGAATAAGTTCAGATGGA+AGG | - | chr7.1:76422980-76422999 | MS.gene061390:CDS | 30.0% | |
| TCAAATAAGTCAACCAAAAG+AGG | - | chr7.1:76422082-76422101 | MS.gene061390:intron | 30.0% | |
| TCAATGGTTTAAGCTACATT+TGG | - | chr7.1:76421821-76421840 | MS.gene061390:CDS | 30.0% | |
| TCATTTGACATAATGAAGCA+CGG | + | chr7.1:76424105-76424124 | None:intergenic | 30.0% | |
| TGTTCCAACAAATGTAAACA+AGG | + | chr7.1:76423580-76423599 | None:intergenic | 30.0% | |
| TTCAGTGTAATTACAAGTGT+TGG | + | chr7.1:76423999-76424018 | None:intergenic | 30.0% | |
| TTGATCATAGTTATGTCACA+AGG | - | chr7.1:76421746-76421765 | MS.gene061390:CDS | 30.0% | |
| TTGCAGATGACAAATGAAAT+AGG | - | chr7.1:76423068-76423087 | MS.gene061390:intron | 30.0% | |
| TTGTGCTTATTTAGATTGAC+GGG | - | chr7.1:76422751-76422770 | MS.gene061390:intron | 30.0% | |
| ! | AGGAGAAAAGGTTTAAGTTT+AGG | - | chr7.1:76423500-76423519 | MS.gene061390:intron | 30.0% |
| ! | CTTATAATCAAAGGCATGTA+TGG | - | chr7.1:76424434-76424453 | MS.gene061390:intron | 30.0% |
| ! | GACATATATCAGTTTGTTCA+TGG | - | chr7.1:76422635-76422654 | MS.gene061390:intron | 30.0% |
| ! | GGAGAAAAGGTTTAAGTTTA+GGG | - | chr7.1:76423501-76423520 | MS.gene061390:intron | 30.0% |
| ! | GTACTGACACTTATAATCAA+AGG | - | chr7.1:76424425-76424444 | MS.gene061390:intron | 30.0% |
| ! | GTTTTTGCTAAAAGTTACAG+TGG | + | chr7.1:76422800-76422819 | None:intergenic | 30.0% |
| ! | TTAGATTCAACCCTTATTTG+TGG | - | chr7.1:76422574-76422593 | MS.gene061390:intron | 30.0% |
| !! | ACAAAGTTCTGAATGCTTAT+AGG | + | chr7.1:76424404-76424423 | None:intergenic | 30.0% |
| !! | TCTTTTTATTTGGCTTAGGA+TGG | - | chr7.1:76422540-76422559 | MS.gene061390:intron | 30.0% |
| !!! | TTCATTTTTTCCCCATTTGA+TGG | - | chr7.1:76421789-76421808 | MS.gene061390:CDS | 30.0% |
| AAACATCATAGGAAGGGAAT+TGG | - | chr7.1:76422903-76422922 | MS.gene061390:intron | 35.0% | |
| AAAGAAGATGCAAGTGTGTT+TGG | + | chr7.1:76423285-76423304 | None:intergenic | 35.0% | |
| AAGAACACCATTTCCTTATC+TGG | - | chr7.1:76424633-76424652 | MS.gene061390:intron | 35.0% | |
| AGTTGTATTGCTTGATCACT+TGG | - | chr7.1:76423681-76423700 | MS.gene061390:intron | 35.0% | |
| ATCCACTCTAAATCAGAAGA+AGG | + | chr7.1:76424897-76424916 | None:intergenic | 35.0% | |
| ATTTAGATTGACGGGGAATT+TGG | - | chr7.1:76422759-76422778 | MS.gene061390:intron | 35.0% | |
| CAACAACCAACAAATTTGGT+TGG | + | chr7.1:76422279-76422298 | None:intergenic | 35.0% | |
| CACATTCAGGAACAACAAAT+GGG | + | chr7.1:76424821-76424840 | None:intergenic | 35.0% | |
| CACGAATAAACATCATAGGA+AGG | - | chr7.1:76422896-76422915 | MS.gene061390:intron | 35.0% | |
| CATGTATTTGTATTCCATGC+TGG | - | chr7.1:76422196-76422215 | MS.gene061390:intron | 35.0% | |
| GACAAATCCAGATAAGGAAA+TGG | + | chr7.1:76424643-76424662 | None:intergenic | 35.0% | |
| GATGTGTCAGTATTGTATCT+GGG | - | chr7.1:76424297-76424316 | MS.gene061390:intron | 35.0% | |
| GGACAAAAAATTGATCCAGA+AGG | + | chr7.1:76423025-76423044 | None:intergenic | 35.0% | |
| GTTTGAACATCTTGTTCTCA+AGG | - | chr7.1:76422338-76422357 | MS.gene061390:intron | 35.0% | |
| TAACTGTTTGAGAGAGTTTG+CGG | + | chr7.1:76422035-76422054 | None:intergenic | 35.0% | |
| TAGGCTTCATTATTTAAGGG+CGG | + | chr7.1:76424385-76424404 | None:intergenic | 35.0% | |
| TCAAGCAATACAACTGTAGA+TGG | + | chr7.1:76423676-76423695 | None:intergenic | 35.0% | |
| TCTAAATCAGAAGAAGGCAA+AGG | + | chr7.1:76424891-76424910 | None:intergenic | 35.0% | |
| TGCAAAATAGCTTACAATGG+TGG | + | chr7.1:76423718-76423737 | None:intergenic | 35.0% | |
| TGTGCACAATTGCTCAATTT+CGG | + | chr7.1:76423647-76423666 | None:intergenic | 35.0% | |
| TGTGCTTATTTAGATTGACG+GGG | - | chr7.1:76422752-76422771 | MS.gene061390:intron | 35.0% | |
| ! | AAGACAATTTTCAAAAGGGC+TGG | - | chr7.1:76423092-76423111 | MS.gene061390:intron | 35.0% |
| ! | AGACAATTTTCAAAAGGGCT+GGG | - | chr7.1:76423093-76423112 | MS.gene061390:intron | 35.0% |
| ! | AGTTTTTCGTCCATCAAATG+GGG | + | chr7.1:76421802-76421821 | None:intergenic | 35.0% |
| ! | GAGTTTTTCGTCCATCAAAT+GGG | + | chr7.1:76421803-76421822 | None:intergenic | 35.0% |
| ! | GTGTCATTGCTTCATAGATT+AGG | - | chr7.1:76424546-76424565 | MS.gene061390:intron | 35.0% |
| ! | TAAATGCATGTTTGGAATGG+CGG | + | chr7.1:76422866-76422885 | None:intergenic | 35.0% |
| ! | TCTGATTTAGAGTGGATCAT+GGG | - | chr7.1:76424900-76424919 | MS.gene061390:intron | 35.0% |
| ! | TGAGTTTTTCGTCCATCAAA+TGG | + | chr7.1:76421804-76421823 | None:intergenic | 35.0% |
| ! | TTACAATGGTGGTTTGCAAA+AGG | + | chr7.1:76423707-76423726 | None:intergenic | 35.0% |
| ! | TTCTGATTTAGAGTGGATCA+TGG | - | chr7.1:76424899-76424918 | MS.gene061390:intron | 35.0% |
| ! | TTGATGGACGAAAAACTCAA+TGG | - | chr7.1:76421805-76421824 | MS.gene061390:CDS | 35.0% |
| !!! | CTTGTTTTGAGGAAGAAAGT+AGG | + | chr7.1:76423308-76423327 | None:intergenic | 35.0% |
| AACTGACGAAGTAGGAGAAA+AGG | - | chr7.1:76423488-76423507 | MS.gene061390:intron | 40.0% | |
| AAGGGTTGAATCTAACAGCA+CGG | + | chr7.1:76422569-76422588 | None:intergenic | 40.0% | |
| AAGTTTAGGGACGAAATTCG+TGG | - | chr7.1:76423514-76423533 | MS.gene061390:intron | 40.0% | |
| AATAAGCTGCACTGCTTCTT+TGG | + | chr7.1:76424856-76424875 | None:intergenic | 40.0% | |
| ACCAAAGCTAGAGACAAGTT+GGG | + | chr7.1:76424677-76424696 | None:intergenic | 40.0% | |
| ACTATGTTGCAGAAATGACG+AGG | - | chr7.1:76423779-76423798 | MS.gene061390:intron | 40.0% | |
| AGACATAACACCAACACATG+TGG | - | chr7.1:76424232-76424251 | MS.gene061390:intron | 40.0% | |
| AGAGGAGACAAATCCAGATA+AGG | + | chr7.1:76424649-76424668 | None:intergenic | 40.0% | |
| AGATGGAAGGATACTTAGCA+AGG | - | chr7.1:76422993-76423012 | MS.gene061390:CDS | 40.0% | |
| ATCATAGGAAGGGAATTGGT+AGG | - | chr7.1:76422907-76422926 | MS.gene061390:intron | 40.0% | |
| ATGACACTAAACGTCAACAC+CGG | + | chr7.1:76424533-76424552 | None:intergenic | 40.0% | |
| CAGATTTCAATCTTCAAGCC+CGG | + | chr7.1:76422946-76422965 | None:intergenic | 40.0% | |
| CCAACAAATGTAAACAAGGG+TGG | + | chr7.1:76423576-76423595 | None:intergenic | 40.0% | |
| CCACATTCAGGAACAACAAA+TGG | + | chr7.1:76424822-76424841 | None:intergenic | 40.0% | |
| GAAATGTCAGTAGGTGAAGA+TGG | - | chr7.1:76422138-76422157 | MS.gene061390:intron | 40.0% | |
| GATGGAAGGATACTTAGCAA+GGG | - | chr7.1:76422994-76423013 | MS.gene061390:CDS | 40.0% | |
| GGATGTGTCAGTATTGTATC+TGG | - | chr7.1:76424296-76424315 | MS.gene061390:intron | 40.0% | |
| GGTAGGACTTTCTTAATTGC+CGG | - | chr7.1:76422924-76422943 | MS.gene061390:intron | 40.0% | |
| GTAGGACTTTCTTAATTGCC+GGG | - | chr7.1:76422925-76422944 | MS.gene061390:intron | 40.0% | |
| GTATGGTATTTGACACGTGT+TGG | - | chr7.1:76424451-76424470 | MS.gene061390:intron | 40.0% | |
| GTGAATTGACGGAATCATTG+TGG | + | chr7.1:76422844-76422863 | None:intergenic | 40.0% | |
| GTTCCTGAATGTGGATACAA+AGG | - | chr7.1:76424828-76424847 | MS.gene061390:intron | 40.0% | |
| TCATGGTTTCTCATGAAGCA+CGG | - | chr7.1:76423910-76423929 | MS.gene061390:intron | 40.0% | |
| TGCCTTCTTCTGATTTAGAG+TGG | - | chr7.1:76424892-76424911 | MS.gene061390:intron | 40.0% | |
| TTGAATGTGACCACATGTGT+TGG | + | chr7.1:76424245-76424264 | None:intergenic | 40.0% | |
| TTGAATGTGATCGCACATCT+TGG | + | chr7.1:76424486-76424505 | None:intergenic | 40.0% | |
| ! | AGTTGGCTTCATGTGTATGA+AGG | - | chr7.1:76423130-76423149 | MS.gene061390:intron | 40.0% |
| ! | CCACCCTTGTTTACATTTGT+TGG | - | chr7.1:76423573-76423592 | MS.gene061390:CDS | 40.0% |
| ! | GACAATTTTCAAAAGGGCTG+GGG | - | chr7.1:76423094-76423113 | MS.gene061390:intron | 40.0% |
| ! | TGGTGCTAATCGTGTAATGT+GGG | - | chr7.1:76424693-76424712 | MS.gene061390:intron | 40.0% |
| !! | CCATTTGTTGTTCCTGAATG+TGG | - | chr7.1:76424819-76424838 | MS.gene061390:intron | 40.0% |
| !! | TTGGTGCTAATCGTGTAATG+TGG | - | chr7.1:76424692-76424711 | MS.gene061390:intron | 40.0% |
| AGGCATGCTTGACTTACTTG+TGG | + | chr7.1:76423846-76423865 | None:intergenic | 45.0% | |
| AGTCAACCAAAAGAGGCCTT+TGG | - | chr7.1:76422089-76422108 | MS.gene061390:intron | 45.0% | |
| CACCAAAGCTAGAGACAAGT+TGG | + | chr7.1:76424678-76424697 | None:intergenic | 45.0% | |
| CACCAGATGGCCACAAATAA+GGG | + | chr7.1:76422587-76422606 | None:intergenic | 45.0% | |
| CTTGCTAATCCAGCTGATGA+TGG | - | chr7.1:76422300-76422319 | MS.gene061390:intron | 45.0% | |
| GACATAATGAAGCACGGACA+CGG | + | chr7.1:76424099-76424118 | None:intergenic | 45.0% | |
| GCTCCTTTGTATCCACATTC+AGG | + | chr7.1:76424834-76424853 | None:intergenic | 45.0% | |
| GGCATGCTTGACTTACTTGT+GGG | + | chr7.1:76423845-76423864 | None:intergenic | 45.0% | |
| GGTGCTAATCGTGTAATGTG+GGG | - | chr7.1:76424694-76424713 | MS.gene061390:intron | 45.0% | |
| TCACCAGATGGCCACAAATA+AGG | + | chr7.1:76422588-76422607 | None:intergenic | 45.0% | |
| TGTCATGTTCGTGTCTTCGA+TGG | - | chr7.1:76422468-76422487 | MS.gene061390:intron | 45.0% | |
| TGTTGCAGAAATGACGAGGA+AGG | - | chr7.1:76423783-76423802 | MS.gene061390:intron | 45.0% | |
| TGTTGTGTTAGACACCGACA+CGG | - | chr7.1:76423971-76423990 | MS.gene061390:intron | 45.0% | |
| TTGGAATGGCGGTGAATTGA+CGG | + | chr7.1:76422855-76422874 | None:intergenic | 45.0% | |
| TTTGTGGCCATCTGGTGAAA+AGG | - | chr7.1:76422590-76422609 | MS.gene061390:intron | 45.0% | |
| ! | AACCCTTATTTGTGGCCATC+TGG | - | chr7.1:76422582-76422601 | MS.gene061390:intron | 45.0% |
| ! | TCCCAACTTGTCTCTAGCTT+TGG | - | chr7.1:76424673-76424692 | MS.gene061390:intron | 45.0% |
| ! | TTGCCTACCTTTTCACCAGA+TGG | + | chr7.1:76422600-76422619 | None:intergenic | 45.0% |
| !! | AAAGCACCAAAGGCCTCTTT+TGG | + | chr7.1:76422098-76422117 | None:intergenic | 45.0% |
| !! | AACGGCAACAAAAGCACCAA+AGG | + | chr7.1:76422108-76422127 | None:intergenic | 45.0% |
| !! | AATCCAGCTGATGATGGAAG+CGG | - | chr7.1:76422306-76422325 | MS.gene061390:intron | 45.0% |
| ATGGAGGAAGCAGGAGTAGA+TGG | - | chr7.1:76421691-76421710 | MS.gene061390:CDS | 50.0% | |
| CACCGAACACGCTTTCAATC+TGG | + | chr7.1:76424204-76424223 | None:intergenic | 50.0% | |
| CTAATCGTGTAATGTGGGGC+AGG | - | chr7.1:76424698-76424717 | MS.gene061390:intron | 50.0% | |
| CTTGCTTAGCAGCAGTCAAC+TGG | + | chr7.1:76424953-76424972 | None:intergenic | 50.0% | |
| GGGGAACTCAATGTAGCAGT+TGG | - | chr7.1:76423113-76423132 | MS.gene061390:intron | 50.0% | |
| TGGCCATCTGGTGAAAAGGT+AGG | - | chr7.1:76422594-76422613 | MS.gene061390:intron | 50.0% | |
| TTAGCAAGGGAAGACCCTTC+TGG | - | chr7.1:76423007-76423026 | MS.gene061390:CDS | 50.0% | |
| ! | CGCCAGATTGAAAGCGTGTT+CGG | - | chr7.1:76424199-76424218 | MS.gene061390:intron | 50.0% |
| ! | GAGACAAGTTGGGACAAGAG+AGG | + | chr7.1:76424667-76424686 | None:intergenic | 50.0% |
| ! | GTGATCGCACATCTTGGTGT+CGG | + | chr7.1:76424480-76424499 | None:intergenic | 50.0% |
| !! | ATCCAGCTGATGATGGAAGC+GGG | - | chr7.1:76422307-76422326 | MS.gene061390:intron | 50.0% |
| !! | TACAAGTGTTGGTGCCGTGT+CGG | + | chr7.1:76423988-76424007 | None:intergenic | 50.0% |
| ACACAACACGTGTCCGACAC+CGG | + | chr7.1:76423959-76423978 | None:intergenic | 55.0% | |
| CATGAAGCACGGACACTCCT+CGG | - | chr7.1:76423921-76423940 | MS.gene061390:intron | 55.0% | |
| ACCGGACACGACACAGACAC+TGG | + | chr7.1:76424061-76424080 | None:intergenic | 60.0% | |
| AGCCCGCTTCCATCATCAGC+TGG | + | chr7.1:76422312-76422331 | None:intergenic | 60.0% | |
| CACAACACGTGTCCGACACC+GGG | + | chr7.1:76423958-76423977 | None:intergenic | 60.0% | |
| GCACGGACACTCCTCGGTTT+AGG | - | chr7.1:76423927-76423946 | MS.gene061390:intron | 60.0% | |
| GCCAGTGTCTGTGTCGTGTC+CGG | - | chr7.1:76424057-76424076 | MS.gene061390:intron | 60.0% | |
| GTTTAGGCGTGTCCCGGTGT+CGG | - | chr7.1:76423943-76423962 | MS.gene061390:intron | 60.0% | |
| TCCTCGGTTTAGGCGTGTCC+CGG | - | chr7.1:76423937-76423956 | MS.gene061390:intron | 60.0% | |
| TGAAGCACGGACACGGACAC+CGG | + | chr7.1:76424092-76424111 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAAACCG+AGG | + | chr7.1:76423941-76423960 | None:intergenic | 65.0% | |
| ACGGACACGGACACCGGACA+CGG | + | chr7.1:76424086-76424105 | None:intergenic | 65.0% | |
| TCGTGTCCGGTGTCCGTGTC+CGG | - | chr7.1:76424070-76424089 | MS.gene061390:CDS | 65.0% | |
| CGGACACCGGACACGGACAC+CGG | + | chr7.1:76424079-76424098 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 76421691 | 76424983 | 76421691 | ID=MS.gene061390 |
| chr7.1 | mRNA | 76421691 | 76424983 | 76421691 | ID=MS.gene061390.t1;Parent=MS.gene061390 |
| chr7.1 | exon | 76424907 | 76424983 | 76424907 | ID=MS.gene061390.t1.exon1;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76424907 | 76424983 | 76424907 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76424315 | 76424414 | 76424315 | ID=MS.gene061390.t1.exon2;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76424315 | 76424414 | 76424315 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76424063 | 76424116 | 76424063 | ID=MS.gene061390.t1.exon3;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76424063 | 76424116 | 76424063 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76423523 | 76423600 | 76423523 | ID=MS.gene061390.t1.exon4;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76423523 | 76423600 | 76423523 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76422952 | 76423049 | 76422952 | ID=MS.gene061390.t1.exon5;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76422952 | 76423049 | 76422952 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76422826 | 76422883 | 76422826 | ID=MS.gene061390.t1.exon6;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76422826 | 76422883 | 76422826 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76421955 | 76422076 | 76421955 | ID=MS.gene061390.t1.exon7;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76421955 | 76422076 | 76421955 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| chr7.1 | exon | 76421691 | 76421862 | 76421691 | ID=MS.gene061390.t1.exon8;Parent=MS.gene061390.t1 |
| chr7.1 | CDS | 76421691 | 76421862 | 76421691 | ID=cds.MS.gene061390.t1;Parent=MS.gene061390.t1 |
| Gene Sequence |
| Protein sequence |
