Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061557.t1 | XP_003600668.2 | 98.6 | 511 | 6 | 1 | 16 | 525 | 1 | 511 | 8.50E-289 | 1002.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061557.t1 | Q6P2Z6 | 45.9 | 499 | 249 | 10 | 30 | 518 | 13 | 500 | 6.4e-120 | 432.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061557.t1 | G7J8P2 | 98.6 | 511 | 6 | 1 | 16 | 525 | 1 | 511 | 6.1e-289 | 1002.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54064 | MS.gene061557 | PPI |
| MS.gene015887 | MS.gene061557 | PPI |
| MS.gene061557 | MS.gene86289 | PPI |
| MS.gene021568 | MS.gene061557 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061557.t1 | MTR_3g064880 | 98.630 | 511 | 6 | 1 | 16 | 525 | 1 | 511 | 0.0 | 1046 |
| MS.gene061557.t1 | MTR_4g107030 | 71.183 | 465 | 73 | 7 | 10 | 464 | 1 | 414 | 0.0 | 651 |
| MS.gene061557.t1 | MTR_5g091890 | 59.901 | 404 | 157 | 3 | 28 | 429 | 14 | 414 | 1.46e-170 | 491 |
| MS.gene061557.t1 | MTR_5g089690 | 37.158 | 366 | 169 | 11 | 173 | 505 | 5 | 342 | 3.01e-58 | 197 |
| MS.gene061557.t1 | MTR_5g090460 | 37.758 | 339 | 166 | 11 | 180 | 502 | 23 | 332 | 3.11e-57 | 194 |
| MS.gene061557.t1 | MTR_5g091160 | 36.565 | 361 | 177 | 9 | 173 | 505 | 5 | 341 | 6.08e-57 | 193 |
| MS.gene061557.t1 | MTR_5g090030 | 41.007 | 278 | 138 | 5 | 228 | 502 | 23 | 277 | 4.92e-54 | 184 |
| MS.gene061557.t1 | MTR_5g011470 | 33.067 | 375 | 181 | 11 | 173 | 505 | 5 | 351 | 1.61e-49 | 174 |
| MS.gene061557.t1 | MTR_5g006990 | 34.511 | 368 | 167 | 11 | 173 | 505 | 5 | 333 | 1.77e-49 | 173 |
| MS.gene061557.t1 | MTR_5g011640 | 33.067 | 375 | 181 | 11 | 173 | 505 | 5 | 351 | 2.34e-49 | 174 |
| MS.gene061557.t1 | MTR_5g092540 | 39.777 | 269 | 123 | 7 | 259 | 505 | 8 | 259 | 4.62e-48 | 167 |
| MS.gene061557.t1 | MTR_5g008620 | 36.957 | 322 | 139 | 10 | 175 | 471 | 7 | 289 | 5.54e-48 | 169 |
| MS.gene061557.t1 | MTR_5g091490 | 34.000 | 350 | 165 | 10 | 180 | 505 | 15 | 322 | 5.49e-46 | 164 |
| MS.gene061557.t1 | MTR_8g442440 | 65.079 | 63 | 22 | 0 | 253 | 315 | 7 | 69 | 2.28e-21 | 89.0 |
| MS.gene061557.t1 | MTR_4g069000 | 32.778 | 180 | 79 | 4 | 321 | 472 | 31 | 196 | 1.75e-19 | 87.4 |
| MS.gene061557.t1 | MTR_0001s0160 | 73.684 | 38 | 10 | 0 | 266 | 303 | 40 | 77 | 1.39e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061557.t1 | AT2G03820 | 64.554 | 505 | 159 | 6 | 19 | 512 | 6 | 501 | 0.0 | 689 |
Find 116 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAAAGCTGCTGCAATTT+TGG | 0.076449 | 3.2:+60384338 | MS.gene061557:CDS |
| TACCTTGAAGTTTGGTTTCT+TGG | 0.178636 | 3.2:+60384425 | MS.gene061557:CDS |
| ATGGCTTATAGTCTTTATTT+TGG | 0.233875 | 3.2:-60384929 | None:intergenic |
| GTGGCCCGTGTGTCTGATTT+TGG | 0.235353 | 3.2:+60384588 | MS.gene061557:CDS |
| TAGTAAATGCTGAGTTTATT+TGG | 0.252421 | 3.2:+60383845 | MS.gene061557:CDS |
| CCCAAAATTGCAGCAGCTTT+AGG | 0.260285 | 3.2:-60384339 | None:intergenic |
| CCATGGGATGAGTTGCTAAC+TGG | 0.267306 | 3.2:+60384996 | MS.gene061557:CDS |
| TTATCACTGCGACTCTTAAC+AGG | 0.273169 | 3.2:-60384213 | None:intergenic |
| GATATGTTGAACCGCAATTC+AGG | 0.276469 | 3.2:-60384900 | None:intergenic |
| TTCTTTATCAAAACCACTTC+AGG | 0.282795 | 3.2:-60384744 | None:intergenic |
| AATTAAATCCTCACGACAAA+TGG | 0.343202 | 3.2:-60384307 | None:intergenic |
| ACAAAACACTGCCAATTGTT+TGG | 0.344709 | 3.2:-60383582 | None:intergenic |
| ATTTGGAGCAGCTAATTCTA+AGG | 0.357779 | 3.2:+60384076 | MS.gene061557:CDS |
| GATCCACTTACCTTGAAGTT+TGG | 0.358412 | 3.2:+60384417 | MS.gene061557:CDS |
| CACCGTGATAAACCTCCTTC+TGG | 0.371610 | 3.2:-60383909 | None:intergenic |
| ACACACATATTGGCTGCATT+TGG | 0.372787 | 3.2:-60383631 | None:intergenic |
| CAAACACTTCACACACATAT+TGG | 0.375834 | 3.2:-60383641 | None:intergenic |
| ATCAAGTTTGTTGAATTTGT+AGG | 0.382573 | 3.2:+60384180 | MS.gene061557:CDS |
| CCCTGTCGAGTATGTTCAAC+AGG | 0.389318 | 3.2:+60383951 | MS.gene061557:CDS |
| GCTAGTAAGTAAAGACTTGA+AGG | 0.390432 | 3.2:-60384472 | None:intergenic |
| ATTAAATCCTCACGACAAAT+GGG | 0.404273 | 3.2:-60384306 | None:intergenic |
| GAAGAATATGAATATCAATA+AGG | 0.410544 | 3.2:+60383816 | MS.gene061557:CDS |
| ACTTGCAGCCACCGAGAACT+TGG | 0.411072 | 3.2:+60383737 | MS.gene061557:CDS |
| CATGGGATGAGTTGCTAACT+GGG | 0.414115 | 3.2:+60384997 | MS.gene061557:CDS |
| TCTTGGATGCTGAGCAGTAT+TGG | 0.423394 | 3.2:+60384442 | MS.gene061557:CDS |
| ACAGCAGCAATCCACTGATC+AGG | 0.432686 | 3.2:-60384012 | None:intergenic |
| TTCAAGGTTCACCAAACAAT+TGG | 0.435459 | 3.2:+60383571 | MS.gene061557:CDS |
| CAACAGTAATGACATGGAAT+TGG | 0.439795 | 3.2:+60384701 | MS.gene061557:CDS |
| TCAAGTTTGTTGAATTTGTA+GGG | 0.441152 | 3.2:+60384181 | MS.gene061557:CDS |
| TGCAGTTTGACCCAAGTTCT+CGG | 0.444584 | 3.2:-60383748 | None:intergenic |
| ATCCAAGAAACCAAACTTCA+AGG | 0.453254 | 3.2:-60384427 | None:intergenic |
| AAGCCTGGTGACAATGCTCT+TGG | 0.459127 | 3.2:+60384660 | MS.gene061557:CDS |
| TGTCACCAGGCTTTAAAAGA+TGG | 0.462708 | 3.2:-60384650 | None:intergenic |
| CGAATACACCTGGCATGATA+AGG | 0.471281 | 3.2:-60383525 | None:intergenic |
| TCAGGCAACATGTCTCTCAT+AGG | 0.480355 | 3.2:+60384040 | MS.gene061557:CDS |
| AAGAGGCACCTTCTGTTCCA+TGG | 0.487115 | 3.2:+60384979 | MS.gene061557:CDS |
| AAACCAAACTTCAAGGTAAG+TGG | 0.487609 | 3.2:-60384420 | None:intergenic |
| AATCTTATCATCAGCCTCCA+TGG | 0.489948 | 3.2:-60384814 | None:intergenic |
| ACCTTCGTGCAAATCACAAT+AGG | 0.493803 | 3.2:-60384372 | None:intergenic |
| ACATGTGTGAATCTTGCTCT+AGG | 0.495050 | 3.2:+60383977 | MS.gene061557:CDS |
| ATATGTTGAACCGCAATTCA+GGG | 0.495410 | 3.2:-60384899 | None:intergenic |
| GGATTGCTGCTGTGCAACTC+AGG | 0.500369 | 3.2:+60384022 | MS.gene061557:CDS |
| TCCTGTTGAACATACTCGAC+AGG | 0.505091 | 3.2:-60383952 | None:intergenic |
| GTCACAGCTGCCACCTCTGA+TGG | 0.507470 | 3.2:-60384948 | None:intergenic |
| CAATTCCATGTCATTACTGT+TGG | 0.507714 | 3.2:-60384700 | None:intergenic |
| GGACGGAGCCACATTCTAAG+AGG | 0.508408 | 3.2:+60383866 | MS.gene061557:CDS |
| TTCTAAGAGGGTTAAAGTCA+AGG | 0.516733 | 3.2:+60383879 | MS.gene061557:CDS |
| CAAAGGAAATATTCCTGAAG+TGG | 0.521150 | 3.2:+60384731 | MS.gene061557:CDS |
| ACAAGAAGCCGGTATGTTCA+AGG | 0.521417 | 3.2:+60383555 | MS.gene061557:CDS |
| CAAACTGCAGTTAGAATCAA+AGG | 0.528303 | 3.2:+60383762 | MS.gene061557:CDS |
| ATCTTATCATCAGCCTCCAT+GGG | 0.529967 | 3.2:-60384813 | None:intergenic |
| GGAAGGGTTACTGAAGCGTC+TGG | 0.533283 | 3.2:+60383684 | MS.gene061557:CDS |
| ACTTACTAGCAGACAGTTGG+TGG | 0.535891 | 3.2:+60384485 | MS.gene061557:CDS |
| TTCGAGATGGCACAAGAAGC+CGG | 0.536000 | 3.2:+60383544 | MS.gene061557:CDS |
| AAATGCTGAGTTTATTTGGA+CGG | 0.544290 | 3.2:+60383849 | MS.gene061557:CDS |
| GTTTCATCTGAGGTTAATGT+CGG | 0.547286 | 3.2:+60384534 | MS.gene061557:CDS |
| TGCTATCAGAATCAAACAGA+TGG | 0.550633 | 3.2:+60384116 | MS.gene061557:CDS |
| TTTACTTACTAGCAGACAGT+TGG | 0.553886 | 3.2:+60384482 | MS.gene061557:CDS |
| GGAGTATATAGTGTTGGATG+TGG | 0.554292 | 3.2:+60384506 | MS.gene061557:CDS |
| GTTGGTGGAGTATATAGTGT+TGG | 0.555889 | 3.2:+60384500 | MS.gene061557:CDS |
| ACTTTAACCCTCTTAGAATG+TGG | 0.559102 | 3.2:-60383874 | None:intergenic |
| TGGATGCTGAGCAGTATTGG+AGG | 0.562084 | 3.2:+60384445 | MS.gene061557:CDS |
| AGTCAAGGTTAGTGTCCAGA+AGG | 0.563891 | 3.2:+60383894 | MS.gene061557:CDS |
| AACTCATCCCATGGAACAGA+AGG | 0.564055 | 3.2:-60384987 | None:intergenic |
| TATTTCTCTAATCGAAGTCA+TGG | 0.564179 | 3.2:+60384156 | MS.gene061557:CDS |
| AAAATTGCAGCAGCTTTAGG+AGG | 0.569697 | 3.2:-60384336 | None:intergenic |
| TCATCTGAGGTTAATGTCGG+TGG | 0.574369 | 3.2:+60384537 | MS.gene061557:CDS |
| TATCACTGCGACTCTTAACA+GGG | 0.575208 | 3.2:-60384212 | None:intergenic |
| TCCTATTGTGATTTGCACGA+AGG | 0.576645 | 3.2:+60384371 | MS.gene061557:CDS |
| CTTGCAGCCACCGAGAACTT+GGG | 0.577871 | 3.2:+60383738 | MS.gene061557:CDS |
| TCTTGACCTGAGTGAGGGTG+AGG | 0.578174 | 3.2:+60385028 | MS.gene061557:CDS |
| TGAAGATCTTGACCTGAGTG+AGG | 0.582777 | 3.2:+60385022 | MS.gene061557:CDS |
| TGTCGATGGCGAGGATAACA+TGG | 0.582977 | 3.2:+60385052 | MS.gene061557:CDS |
| GTAATGACATGGAATTGGAC+AGG | 0.584948 | 3.2:+60384706 | MS.gene061557:CDS |
| GACGGAGCCACATTCTAAGA+GGG | 0.588115 | 3.2:+60383867 | MS.gene061557:CDS |
| AGAGGCACCTTCTGTTCCAT+GGG | 0.589082 | 3.2:+60384980 | MS.gene061557:CDS |
| CAAGGTTAGTGTCCAGAAGG+AGG | 0.589245 | 3.2:+60383897 | MS.gene061557:CDS |
| TAACCAAGAGCATTGTCACC+AGG | 0.592121 | 3.2:-60384663 | None:intergenic |
| TCGGAAGTTGATATCACGGA+AGG | 0.598114 | 3.2:+60383667 | MS.gene061557:CDS |
| TTGGTGAACCTTGAACATAC+CGG | 0.599471 | 3.2:-60383563 | None:intergenic |
| CAGCAGCAATCCACTGATCA+GGG | 0.600518 | 3.2:-60384011 | None:intergenic |
| AGTGAGGGTGAGGGTGTCGA+TGG | 0.601288 | 3.2:+60385038 | MS.gene061557:CDS |
| TGCAAGTAACTTTCACACTC+AGG | 0.606381 | 3.2:-60383721 | None:intergenic |
| TAAGCTTAGACGAATTCCCA+TGG | 0.606545 | 3.2:+60384797 | MS.gene061557:CDS |
| TGTGGAAGTTGTTTCATCTG+AGG | 0.609866 | 3.2:+60384524 | MS.gene061557:CDS |
| GCGCTCGGAAGTTGATATCA+CGG | 0.610409 | 3.2:+60383663 | MS.gene061557:CDS |
| GAGGTGGCAGCTGTGACTGA+TGG | 0.610584 | 3.2:+60384954 | MS.gene061557:CDS |
| CGACACCCTCACCCTCACTC+AGG | 0.612193 | 3.2:-60385034 | None:intergenic |
| CATGCCAGGTGTATTCGAGA+TGG | 0.613849 | 3.2:+60383531 | MS.gene061557:CDS |
| CATGTGTGAATCTTGCTCTA+GGG | 0.616216 | 3.2:+60383978 | MS.gene061557:CDS |
| GGGTGAGGGTGTCGATGGCG+AGG | 0.617303 | 3.2:+60385043 | MS.gene061557:CDS |
| ATGGAATTGGACAGGTACAA+AGG | 0.618324 | 3.2:+60384714 | MS.gene061557:CDS |
| GCTTAAATGAACGAGTCTTG+CGG | 0.619595 | 3.2:-60384779 | None:intergenic |
| TGTGCCATCTCGAATACACC+TGG | 0.626683 | 3.2:-60383535 | None:intergenic |
| CCTGTTGAACATACTCGACA+GGG | 0.626686 | 3.2:-60383951 | None:intergenic |
| TTGCAGCTAACCCTGATCAG+TGG | 0.627759 | 3.2:+60384001 | MS.gene061557:CDS |
| AATCAGCCCCATTTGTCGTG+AGG | 0.628298 | 3.2:+60384299 | MS.gene061557:CDS |
| AGAATCAAACAGATGGATCA+CGG | 0.628536 | 3.2:+60384123 | MS.gene061557:CDS |
| GTCCAGAAGGAGGTTTATCA+CGG | 0.628565 | 3.2:+60383907 | MS.gene061557:CDS |
| GAGCAGCTAATTCTAAGGCA+TGG | 0.629905 | 3.2:+60384081 | MS.gene061557:CDS |
| TCTTTCCAAAATCAGACACA+CGG | 0.630186 | 3.2:-60384593 | None:intergenic |
| GTGTGTGAAGTGTTTGCGCT+CGG | 0.632444 | 3.2:+60383648 | MS.gene061557:CDS |
| CCAGTTAGCAACTCATCCCA+TGG | 0.635935 | 3.2:-60384996 | None:intergenic |
| AGACTATAAGCCATCAGAGG+TGG | 0.640151 | 3.2:+60384938 | MS.gene061557:CDS |
| AGCTGTGACTGATGGTGAAG+AGG | 0.640796 | 3.2:+60384962 | MS.gene061557:CDS |
| GAAGATCTTGACCTGAGTGA+GGG | 0.645915 | 3.2:+60385023 | MS.gene061557:CDS |
| CTTGACCTGAGTGAGGGTGA+GGG | 0.653576 | 3.2:+60385029 | MS.gene061557:CDS |
| TTAAATCCTCACGACAAATG+GGG | 0.655192 | 3.2:-60384305 | None:intergenic |
| CGGAAGTTGATATCACGGAA+GGG | 0.658280 | 3.2:+60383668 | MS.gene061557:CDS |
| TGCTGCCAACAGTAATGACA+TGG | 0.662782 | 3.2:+60384695 | MS.gene061557:CDS |
| TAAAGACTATAAGCCATCAG+AGG | 0.662868 | 3.2:+60384935 | MS.gene061557:CDS |
| CTTTCCAAAATCAGACACAC+GGG | 0.666389 | 3.2:-60384592 | None:intergenic |
| TAGAAGAAAACCCTGAATTG+CGG | 0.680446 | 3.2:+60384889 | MS.gene061557:CDS |
| AGTTTGACCCAAGTTCTCGG+TGG | 0.706073 | 3.2:-60383745 | None:intergenic |
| ATCACTGCGACTCTTAACAG+GGG | 0.721793 | 3.2:-60384211 | None:intergenic |
| GCTTAGACGAATTCCCATGG+AGG | 0.746816 | 3.2:+60384800 | MS.gene061557:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAATATGAATATCAATA+AGG | + | chr3.2:60383816-60383835 | MS.gene061557:CDS | 20.0% |
| ! | TAGTAAATGCTGAGTTTATT+TGG | + | chr3.2:60383845-60383864 | MS.gene061557:CDS | 25.0% |
| !! | TTATAAGTACACATTTTCTG+TGG | + | chr3.2:60384275-60384294 | MS.gene061557:CDS | 25.0% |
| !! | TTTTCTATCAGAACTCATTT+GGG | + | chr3.2:60384627-60384646 | MS.gene061557:CDS | 25.0% |
| !!! | ATCAAGTTTGTTGAATTTGT+AGG | + | chr3.2:60384180-60384199 | MS.gene061557:CDS | 25.0% |
| !!! | ATGGCTTATAGTCTTTATTT+TGG | - | chr3.2:60384932-60384951 | None:intergenic | 25.0% |
| !!! | TCAAGTTTGTTGAATTTGTA+GGG | + | chr3.2:60384181-60384200 | MS.gene061557:CDS | 25.0% |
| AAATGCTGAGTTTATTTGGA+CGG | + | chr3.2:60383849-60383868 | MS.gene061557:CDS | 30.0% | |
| AATTAAATCCTCACGACAAA+TGG | - | chr3.2:60384310-60384329 | None:intergenic | 30.0% | |
| ATTAAATCCTCACGACAAAT+GGG | - | chr3.2:60384309-60384328 | None:intergenic | 30.0% | |
| TATTTCTCTAATCGAAGTCA+TGG | + | chr3.2:60384156-60384175 | MS.gene061557:CDS | 30.0% | |
| TTCTTTATCAAAACCACTTC+AGG | - | chr3.2:60384747-60384766 | None:intergenic | 30.0% | |
| ! | GTTTTCTATCAGAACTCATT+TGG | + | chr3.2:60384626-60384645 | MS.gene061557:CDS | 30.0% |
| !! | TAGGCGTACTTTTTACTATT+TGG | + | chr3.2:60384059-60384078 | MS.gene061557:CDS | 30.0% |
| AAACCAAACTTCAAGGTAAG+TGG | - | chr3.2:60384423-60384442 | None:intergenic | 35.0% | |
| ACAAAACACTGCCAATTGTT+TGG | - | chr3.2:60383585-60383604 | None:intergenic | 35.0% | |
| ACTTTAACCCTCTTAGAATG+TGG | - | chr3.2:60383877-60383896 | None:intergenic | 35.0% | |
| AGAATCAAACAGATGGATCA+CGG | + | chr3.2:60384123-60384142 | MS.gene061557:CDS | 35.0% | |
| ATATGTTGAACCGCAATTCA+GGG | - | chr3.2:60384902-60384921 | None:intergenic | 35.0% | |
| ATCCAAGAAACCAAACTTCA+AGG | - | chr3.2:60384430-60384449 | None:intergenic | 35.0% | |
| CAAACACTTCACACACATAT+TGG | - | chr3.2:60383644-60383663 | None:intergenic | 35.0% | |
| CAAACTGCAGTTAGAATCAA+AGG | + | chr3.2:60383762-60383781 | MS.gene061557:CDS | 35.0% | |
| CAAAGGAAATATTCCTGAAG+TGG | + | chr3.2:60384731-60384750 | MS.gene061557:CDS | 35.0% | |
| CAACAGTAATGACATGGAAT+TGG | + | chr3.2:60384701-60384720 | MS.gene061557:CDS | 35.0% | |
| CAATTCCATGTCATTACTGT+TGG | - | chr3.2:60384703-60384722 | None:intergenic | 35.0% | |
| GCTAGTAAGTAAAGACTTGA+AGG | - | chr3.2:60384475-60384494 | None:intergenic | 35.0% | |
| TAAAGACTATAAGCCATCAG+AGG | + | chr3.2:60384935-60384954 | MS.gene061557:CDS | 35.0% | |
| TAGAAGAAAACCCTGAATTG+CGG | + | chr3.2:60384889-60384908 | MS.gene061557:CDS | 35.0% | |
| TCTTTCCAAAATCAGACACA+CGG | - | chr3.2:60384596-60384615 | None:intergenic | 35.0% | |
| TGCTATCAGAATCAAACAGA+TGG | + | chr3.2:60384116-60384135 | MS.gene061557:CDS | 35.0% | |
| TTAAATCCTCACGACAAATG+GGG | - | chr3.2:60384308-60384327 | None:intergenic | 35.0% | |
| TTCAAGGTTCACCAAACAAT+TGG | + | chr3.2:60383571-60383590 | MS.gene061557:CDS | 35.0% | |
| TTTACTTACTAGCAGACAGT+TGG | + | chr3.2:60384482-60384501 | MS.gene061557:CDS | 35.0% | |
| ! | AGTGTTTTGTGTTGCAAATG+TGG | + | chr3.2:60383595-60383614 | MS.gene061557:CDS | 35.0% |
| ! | ATTTGGAGCAGCTAATTCTA+AGG | + | chr3.2:60384076-60384095 | MS.gene061557:CDS | 35.0% |
| ! | GTGTTTTGTGTTGCAAATGT+GGG | + | chr3.2:60383596-60383615 | MS.gene061557:CDS | 35.0% |
| ! | GTTTCATCTGAGGTTAATGT+CGG | + | chr3.2:60384534-60384553 | MS.gene061557:CDS | 35.0% |
| ! | TACCTTGAAGTTTGGTTTCT+TGG | + | chr3.2:60384425-60384444 | MS.gene061557:CDS | 35.0% |
| ! | TTCTAAGAGGGTTAAAGTCA+AGG | + | chr3.2:60383879-60383898 | MS.gene061557:CDS | 35.0% |
| ! | TTTTTGTTCCTTATCATGCC+AGG | + | chr3.2:60383517-60383536 | MS.gene061557:CDS | 35.0% |
| !! | GCTGCAATTTTGGGAAATAT+TGG | + | chr3.2:60384348-60384367 | MS.gene061557:CDS | 35.0% |
| AATCTTATCATCAGCCTCCA+TGG | - | chr3.2:60384817-60384836 | None:intergenic | 40.0% | |
| ACATGTGTGAATCTTGCTCT+AGG | + | chr3.2:60383977-60383996 | MS.gene061557:CDS | 40.0% | |
| ACCTTCGTGCAAATCACAAT+AGG | - | chr3.2:60384375-60384394 | None:intergenic | 40.0% | |
| ATCTTATCATCAGCCTCCAT+GGG | - | chr3.2:60384816-60384835 | None:intergenic | 40.0% | |
| ATGGAATTGGACAGGTACAA+AGG | + | chr3.2:60384714-60384733 | MS.gene061557:CDS | 40.0% | |
| CATGTGTGAATCTTGCTCTA+GGG | + | chr3.2:60383978-60383997 | MS.gene061557:CDS | 40.0% | |
| CTTTCCAAAATCAGACACAC+GGG | - | chr3.2:60384595-60384614 | None:intergenic | 40.0% | |
| GATATGTTGAACCGCAATTC+AGG | - | chr3.2:60384903-60384922 | None:intergenic | 40.0% | |
| GATCCACTTACCTTGAAGTT+TGG | + | chr3.2:60384417-60384436 | MS.gene061557:CDS | 40.0% | |
| GCTTAAATGAACGAGTCTTG+CGG | - | chr3.2:60384782-60384801 | None:intergenic | 40.0% | |
| GTAATGACATGGAATTGGAC+AGG | + | chr3.2:60384706-60384725 | MS.gene061557:CDS | 40.0% | |
| TAAGCTTAGACGAATTCCCA+TGG | + | chr3.2:60384797-60384816 | MS.gene061557:CDS | 40.0% | |
| TATCACTGCGACTCTTAACA+GGG | - | chr3.2:60384215-60384234 | None:intergenic | 40.0% | |
| TGCAAGTAACTTTCACACTC+AGG | - | chr3.2:60383724-60383743 | None:intergenic | 40.0% | |
| TTATCACTGCGACTCTTAAC+AGG | - | chr3.2:60384216-60384235 | None:intergenic | 40.0% | |
| TTGGTGAACCTTGAACATAC+CGG | - | chr3.2:60383566-60383585 | None:intergenic | 40.0% | |
| ! | ACACACATATTGGCTGCATT+TGG | - | chr3.2:60383634-60383653 | None:intergenic | 40.0% |
| ! | CCTAAAGCTGCTGCAATTTT+GGG | + | chr3.2:60384339-60384358 | MS.gene061557:CDS | 40.0% |
| ! | GGAGTATATAGTGTTGGATG+TGG | + | chr3.2:60384506-60384525 | MS.gene061557:CDS | 40.0% |
| ! | GTTGGTGGAGTATATAGTGT+TGG | + | chr3.2:60384500-60384519 | MS.gene061557:CDS | 40.0% |
| ! | TCCTAAAGCTGCTGCAATTT+TGG | + | chr3.2:60384338-60384357 | MS.gene061557:CDS | 40.0% |
| ! | TCCTATTGTGATTTGCACGA+AGG | + | chr3.2:60384371-60384390 | MS.gene061557:CDS | 40.0% |
| ! | TGTGGAAGTTGTTTCATCTG+AGG | + | chr3.2:60384524-60384543 | MS.gene061557:CDS | 40.0% |
| !! | AAAATTGCAGCAGCTTTAGG+AGG | - | chr3.2:60384339-60384358 | None:intergenic | 40.0% |
| !! | TGTCACCAGGCTTTAAAAGA+TGG | - | chr3.2:60384653-60384672 | None:intergenic | 40.0% |
| !!! | TGTTTTAGCTGATGCTCAAG+TGG | + | chr3.2:60384569-60384588 | MS.gene061557:CDS | 40.0% |
| AACTCATCCCATGGAACAGA+AGG | - | chr3.2:60384990-60385009 | None:intergenic | 45.0% | |
| ACAAGAAGCCGGTATGTTCA+AGG | + | chr3.2:60383555-60383574 | MS.gene061557:CDS | 45.0% | |
| ACTTACTAGCAGACAGTTGG+TGG | + | chr3.2:60384485-60384504 | MS.gene061557:CDS | 45.0% | |
| AGACTATAAGCCATCAGAGG+TGG | + | chr3.2:60384938-60384957 | MS.gene061557:CDS | 45.0% | |
| AGTCAAGGTTAGTGTCCAGA+AGG | + | chr3.2:60383894-60383913 | MS.gene061557:CDS | 45.0% | |
| ATCACTGCGACTCTTAACAG+GGG | - | chr3.2:60384214-60384233 | None:intergenic | 45.0% | |
| CATGGGATGAGTTGCTAACT+GGG | + | chr3.2:60384997-60385016 | MS.gene061557:CDS | 45.0% | |
| CCCAAAATTGCAGCAGCTTT+AGG | - | chr3.2:60384342-60384361 | None:intergenic | 45.0% | |
| CCTGTTGAACATACTCGACA+GGG | - | chr3.2:60383954-60383973 | None:intergenic | 45.0% | |
| CGAATACACCTGGCATGATA+AGG | - | chr3.2:60383528-60383547 | None:intergenic | 45.0% | |
| GAAGATCTTGACCTGAGTGA+GGG | + | chr3.2:60385023-60385042 | MS.gene061557:CDS | 45.0% | |
| GTCCAGAAGGAGGTTTATCA+CGG | + | chr3.2:60383907-60383926 | MS.gene061557:CDS | 45.0% | |
| TCAGGCAACATGTCTCTCAT+AGG | + | chr3.2:60384040-60384059 | MS.gene061557:CDS | 45.0% | |
| TCCTGTTGAACATACTCGAC+AGG | - | chr3.2:60383955-60383974 | None:intergenic | 45.0% | |
| TCTTGGATGCTGAGCAGTAT+TGG | + | chr3.2:60384442-60384461 | MS.gene061557:CDS | 45.0% | |
| TGAAGATCTTGACCTGAGTG+AGG | + | chr3.2:60385022-60385041 | MS.gene061557:CDS | 45.0% | |
| TGCAGTTTGACCCAAGTTCT+CGG | - | chr3.2:60383751-60383770 | None:intergenic | 45.0% | |
| TGCTGCCAACAGTAATGACA+TGG | + | chr3.2:60384695-60384714 | MS.gene061557:CDS | 45.0% | |
| ! | TCATCTGAGGTTAATGTCGG+TGG | + | chr3.2:60384537-60384556 | MS.gene061557:CDS | 45.0% |
| !! | CGGAAGTTGATATCACGGAA+GGG | + | chr3.2:60383668-60383687 | MS.gene061557:CDS | 45.0% |
| !! | GAGCAGCTAATTCTAAGGCA+TGG | + | chr3.2:60384081-60384100 | MS.gene061557:CDS | 45.0% |
| !! | TAACCAAGAGCATTGTCACC+AGG | - | chr3.2:60384666-60384685 | None:intergenic | 45.0% |
| !! | TCGGAAGTTGATATCACGGA+AGG | + | chr3.2:60383667-60383686 | MS.gene061557:CDS | 45.0% |
| !!! | TTGGGCCATCTTTTAAAGCC+TGG | + | chr3.2:60384645-60384664 | MS.gene061557:CDS | 45.0% |
| AAGCCTGGTGACAATGCTCT+TGG | + | chr3.2:60384660-60384679 | MS.gene061557:CDS | 50.0% | |
| AATCAGCCCCATTTGTCGTG+AGG | + | chr3.2:60384299-60384318 | MS.gene061557:CDS | 50.0% | |
| ACAGCAGCAATCCACTGATC+AGG | - | chr3.2:60384015-60384034 | None:intergenic | 50.0% | |
| AGTTTGACCCAAGTTCTCGG+TGG | - | chr3.2:60383748-60383767 | None:intergenic | 50.0% | |
| CAAGGTTAGTGTCCAGAAGG+AGG | + | chr3.2:60383897-60383916 | MS.gene061557:CDS | 50.0% | |
| CACCGTGATAAACCTCCTTC+TGG | - | chr3.2:60383912-60383931 | None:intergenic | 50.0% | |
| CAGCAGCAATCCACTGATCA+GGG | - | chr3.2:60384014-60384033 | None:intergenic | 50.0% | |
| CATGCCAGGTGTATTCGAGA+TGG | + | chr3.2:60383531-60383550 | MS.gene061557:CDS | 50.0% | |
| CCAGTTAGCAACTCATCCCA+TGG | - | chr3.2:60384999-60385018 | None:intergenic | 50.0% | |
| CCATGGGATGAGTTGCTAAC+TGG | + | chr3.2:60384996-60385015 | MS.gene061557:CDS | 50.0% | |
| CCCTGTCGAGTATGTTCAAC+AGG | + | chr3.2:60383951-60383970 | MS.gene061557:CDS | 50.0% | |
| GCTTAGACGAATTCCCATGG+AGG | + | chr3.2:60384800-60384819 | MS.gene061557:CDS | 50.0% | |
| TGTCGATGGCGAGGATAACA+TGG | + | chr3.2:60385052-60385071 | MS.gene061557:CDS | 50.0% | |
| TGTGCCATCTCGAATACACC+TGG | - | chr3.2:60383538-60383557 | None:intergenic | 50.0% | |
| TTCGAGATGGCACAAGAAGC+CGG | + | chr3.2:60383544-60383563 | MS.gene061557:CDS | 50.0% | |
| TTGCAGCTAACCCTGATCAG+TGG | + | chr3.2:60384001-60384020 | MS.gene061557:CDS | 50.0% | |
| ! | AGCTGTGACTGATGGTGAAG+AGG | + | chr3.2:60384962-60384981 | MS.gene061557:CDS | 50.0% |
| ! | GACGGAGCCACATTCTAAGA+GGG | + | chr3.2:60383867-60383886 | MS.gene061557:CDS | 50.0% |
| ! | GTGTGTGAAGTGTTTGCGCT+CGG | + | chr3.2:60383648-60383667 | MS.gene061557:CDS | 50.0% |
| ! | TGGATGCTGAGCAGTATTGG+AGG | + | chr3.2:60384445-60384464 | MS.gene061557:CDS | 50.0% |
| !! | AAGAGGCACCTTCTGTTCCA+TGG | + | chr3.2:60384979-60384998 | MS.gene061557:CDS | 50.0% |
| !! | AGAGGCACCTTCTGTTCCAT+GGG | + | chr3.2:60384980-60384999 | MS.gene061557:CDS | 50.0% |
| !! | GCGCTCGGAAGTTGATATCA+CGG | + | chr3.2:60383663-60383682 | MS.gene061557:CDS | 50.0% |
| ACTTGCAGCCACCGAGAACT+TGG | + | chr3.2:60383737-60383756 | MS.gene061557:CDS | 55.0% | |
| CTTGACCTGAGTGAGGGTGA+GGG | + | chr3.2:60385029-60385048 | MS.gene061557:CDS | 55.0% | |
| CTTGCAGCCACCGAGAACTT+GGG | + | chr3.2:60383738-60383757 | MS.gene061557:CDS | 55.0% | |
| GGACGGAGCCACATTCTAAG+AGG | + | chr3.2:60383866-60383885 | MS.gene061557:CDS | 55.0% | |
| GGATTGCTGCTGTGCAACTC+AGG | + | chr3.2:60384022-60384041 | MS.gene061557:CDS | 55.0% | |
| TCTTGACCTGAGTGAGGGTG+AGG | + | chr3.2:60385028-60385047 | MS.gene061557:CDS | 55.0% | |
| ! | GGAAGGGTTACTGAAGCGTC+TGG | + | chr3.2:60383684-60383703 | MS.gene061557:CDS | 55.0% |
| ! | GTGGCCCGTGTGTCTGATTT+TGG | + | chr3.2:60384588-60384607 | MS.gene061557:CDS | 55.0% |
| GAGGTGGCAGCTGTGACTGA+TGG | + | chr3.2:60384954-60384973 | MS.gene061557:CDS | 60.0% | |
| GTCACAGCTGCCACCTCTGA+TGG | - | chr3.2:60384951-60384970 | None:intergenic | 60.0% | |
| !! | AGTGAGGGTGAGGGTGTCGA+TGG | + | chr3.2:60385038-60385057 | MS.gene061557:CDS | 60.0% |
| CGACACCCTCACCCTCACTC+AGG | - | chr3.2:60385037-60385056 | None:intergenic | 65.0% | |
| !! | GGGTGAGGGTGTCGATGGCG+AGG | + | chr3.2:60385043-60385062 | MS.gene061557:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60383505 | 60385082 | 60383505 | ID=MS.gene061557 |
| chr3.2 | mRNA | 60383505 | 60385082 | 60383505 | ID=MS.gene061557.t1;Parent=MS.gene061557 |
| chr3.2 | exon | 60383505 | 60385082 | 60383505 | ID=MS.gene061557.t1.exon1;Parent=MS.gene061557.t1 |
| chr3.2 | CDS | 60383505 | 60385082 | 60383505 | ID=cds.MS.gene061557.t1;Parent=MS.gene061557.t1 |
| Gene Sequence |
| Protein sequence |
