Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061654.t1 | XP_013466677.1 | 85.7 | 223 | 32 | 0 | 1 | 223 | 1 | 223 | 4.60E-95 | 357.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061654.t1 | Q9FTA0 | 58.4 | 178 | 69 | 1 | 46 | 223 | 43 | 215 | 6.9e-55 | 215.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061654.t1 | A0A072VGZ4 | 85.7 | 223 | 32 | 0 | 1 | 223 | 1 | 223 | 3.4e-95 | 357.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene061654 | MS.gene93119 | PPI |
MS.gene061654 | MS.gene93120 | PPI |
MS.gene061654 | MS.gene037375 | PPI |
MS.gene93121 | MS.gene061654 | PPI |
MS.gene061654 | MS.gene040857 | PPI |
MS.gene026428 | MS.gene061654 | PPI |
MS.gene037373 | MS.gene061654 | PPI |
MS.gene061654 | MS.gene061035 | PPI |
MS.gene061654 | MS.gene037374 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061654.t1 | MTR_1g033750 | 93.274 | 223 | 15 | 0 | 1 | 223 | 1 | 223 | 6.25e-156 | 431 |
MS.gene061654.t1 | MTR_1g114640 | 66.516 | 221 | 71 | 2 | 2 | 222 | 3 | 220 | 2.88e-101 | 293 |
MS.gene061654.t1 | MTR_1g114690 | 55.111 | 225 | 83 | 3 | 4 | 222 | 5 | 217 | 3.82e-80 | 239 |
MS.gene061654.t1 | MTR_1g114690 | 54.425 | 226 | 85 | 3 | 4 | 223 | 5 | 218 | 1.96e-79 | 237 |
MS.gene061654.t1 | MTR_1g114750 | 52.915 | 223 | 100 | 3 | 2 | 223 | 3 | 221 | 1.33e-78 | 235 |
MS.gene061654.t1 | MTR_1g114640 | 67.059 | 170 | 53 | 2 | 2 | 171 | 3 | 169 | 1.46e-72 | 218 |
MS.gene061654.t1 | MTR_1g114690 | 47.308 | 260 | 85 | 4 | 4 | 223 | 5 | 252 | 8.18e-72 | 219 |
MS.gene061654.t1 | MTR_1g115130 | 51.570 | 223 | 78 | 2 | 1 | 223 | 2 | 194 | 2.07e-69 | 211 |
MS.gene061654.t1 | MTR_8g100065 | 51.630 | 184 | 88 | 1 | 41 | 223 | 2 | 185 | 3.59e-64 | 197 |
MS.gene061654.t1 | MTR_8g100065 | 56.442 | 163 | 70 | 1 | 62 | 223 | 45 | 207 | 4.07e-62 | 193 |
MS.gene061654.t1 | MTR_6g077990 | 54.321 | 162 | 74 | 0 | 62 | 223 | 37 | 198 | 1.10e-59 | 186 |
MS.gene061654.t1 | MTR_6g077990 | 54.321 | 162 | 74 | 0 | 62 | 223 | 38 | 199 | 1.26e-59 | 186 |
MS.gene061654.t1 | MTR_6g077990 | 56.376 | 149 | 65 | 0 | 75 | 223 | 8 | 156 | 8.16e-57 | 177 |
MS.gene061654.t1 | MTR_1g114690 | 47.087 | 206 | 79 | 5 | 4 | 203 | 5 | 186 | 8.16e-51 | 164 |
MS.gene061654.t1 | MTR_1g114680 | 70.270 | 111 | 33 | 0 | 113 | 223 | 53 | 163 | 6.44e-48 | 156 |
MS.gene061654.t1 | MTR_7g083570 | 37.143 | 175 | 110 | 0 | 48 | 222 | 102 | 276 | 1.86e-41 | 142 |
MS.gene061654.t1 | MTR_3g100750 | 39.355 | 155 | 93 | 1 | 66 | 220 | 102 | 255 | 4.89e-40 | 138 |
MS.gene061654.t1 | MTR_8g069110 | 36.872 | 179 | 102 | 2 | 52 | 220 | 90 | 267 | 1.08e-38 | 135 |
MS.gene061654.t1 | MTR_8g100065 | 49.606 | 127 | 63 | 1 | 42 | 167 | 3 | 129 | 3.07e-37 | 127 |
MS.gene061654.t1 | MTR_6g077990 | 53.704 | 108 | 50 | 0 | 62 | 169 | 37 | 144 | 2.94e-36 | 125 |
MS.gene061654.t1 | MTR_8g100065 | 56.075 | 107 | 46 | 1 | 62 | 167 | 45 | 151 | 2.12e-35 | 123 |
MS.gene061654.t1 | MTR_2g076350 | 33.043 | 230 | 143 | 4 | 1 | 222 | 1 | 227 | 1.20e-33 | 121 |
MS.gene061654.t1 | MTR_5g015750 | 50.685 | 73 | 33 | 2 | 2 | 74 | 3 | 72 | 1.96e-13 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene061654.t1 | AT5G08350 | 53.810 | 210 | 83 | 3 | 15 | 223 | 19 | 215 | 9.41e-76 | 228 |
MS.gene061654.t1 | AT5G23370 | 51.570 | 223 | 92 | 4 | 5 | 223 | 6 | 216 | 1.32e-72 | 220 |
MS.gene061654.t1 | AT5G23350 | 49.099 | 222 | 95 | 4 | 5 | 221 | 6 | 214 | 1.51e-71 | 217 |
MS.gene061654.t1 | AT5G23360 | 47.945 | 219 | 98 | 3 | 5 | 223 | 6 | 208 | 4.59e-69 | 211 |
MS.gene061654.t1 | AT4G01600 | 37.209 | 215 | 121 | 4 | 23 | 223 | 13 | 227 | 1.35e-43 | 146 |
MS.gene061654.t1 | AT4G01600 | 39.227 | 181 | 102 | 2 | 51 | 223 | 8 | 188 | 1.03e-42 | 143 |
MS.gene061654.t1 | AT5G13200 | 33.333 | 207 | 133 | 2 | 16 | 221 | 59 | 261 | 5.86e-42 | 143 |
MS.gene061654.t1 | AT4G01600 | 36.967 | 211 | 122 | 5 | 23 | 223 | 13 | 222 | 1.12e-39 | 136 |
MS.gene061654.t1 | AT1G28200 | 35.849 | 159 | 101 | 1 | 62 | 220 | 97 | 254 | 8.98e-37 | 129 |
MS.gene061654.t1 | AT1G28200 | 35.849 | 159 | 101 | 1 | 62 | 220 | 97 | 254 | 8.98e-37 | 129 |
MS.gene061654.t1 | AT2G22475 | 33.939 | 165 | 108 | 1 | 56 | 220 | 128 | 291 | 9.19e-36 | 128 |
MS.gene061654.t1 | AT5G13200 | 31.373 | 153 | 100 | 2 | 16 | 167 | 59 | 207 | 1.31e-23 | 94.4 |
MS.gene061654.t1 | AT4G40100 | 29.891 | 184 | 95 | 3 | 40 | 220 | 64 | 216 | 4.13e-22 | 90.9 |
MS.gene061654.t1 | AT2G22475 | 29.565 | 115 | 80 | 1 | 56 | 170 | 128 | 241 | 1.15e-16 | 76.6 |
Find 35 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGCAATTTCAATGTACTTT+TGG | 0.206367 | 1.3:+18678970 | None:intergenic |
AACATAACTGATACACTTAA+AGG | 0.236535 | 1.3:-18679470 | MS.gene061654:CDS |
GTTCTAATAAAGTGGCCTTT+TGG | 0.325622 | 1.3:+18679242 | None:intergenic |
TTTCTTCAAGAGCTATTAGT+TGG | 0.372608 | 1.3:-18680157 | MS.gene061654:CDS |
CTCACTAGGATGAACAATCT+TGG | 0.396062 | 1.3:-18679865 | MS.gene061654:CDS |
AATTGATCTCTCACTACAAA+AGG | 0.403914 | 1.3:+18679277 | None:intergenic |
ATTCACCTCAGCAGCATACT+TGG | 0.404852 | 1.3:-18680128 | MS.gene061654:CDS |
CTTTATTAGAACACATTACA+AGG | 0.441996 | 1.3:-18679231 | MS.gene061654:intron |
ATTAAAATCTCTTCTCCAAA+AGG | 0.451169 | 1.3:-18679257 | MS.gene061654:CDS |
GCTGGACTTATTGTAGTAGT+TGG | 0.453049 | 1.3:+18680063 | None:intergenic |
TCACTAGGATGAACAATCTT+GGG | 0.454379 | 1.3:-18679864 | MS.gene061654:CDS |
CTTATTGTAGTAGTTGGACT+TGG | 0.455357 | 1.3:+18680069 | None:intergenic |
TTATTCCACTTGGCAAGATA+AGG | 0.462580 | 1.3:-18679028 | MS.gene061654:CDS |
TGTTATCTATCAACAACATC+TGG | 0.466437 | 1.3:-18679341 | MS.gene061654:CDS |
GGAGCTAGAATTCTTCAAGT+TGG | 0.473121 | 1.3:-18679434 | MS.gene061654:CDS |
TGTAATGTGTTCTAATAAAG+TGG | 0.482439 | 1.3:+18679234 | None:intergenic |
TTTAACAATGTAGTGAAACT+TGG | 0.484836 | 1.3:-18679497 | MS.gene061654:intron |
TCAAGTTGGAGGAGTGGAAA+AGG | 0.489991 | 1.3:-18679420 | MS.gene061654:CDS |
CAACTATTTAGTGTAAAAGA+TGG | 0.490960 | 1.3:-18679389 | MS.gene061654:CDS |
CTTAAAGGAAAGCTGAGCTT+AGG | 0.511360 | 1.3:-18679455 | MS.gene061654:CDS |
GCTAGAATTCTTCAAGTTGG+AGG | 0.512754 | 1.3:-18679431 | MS.gene061654:CDS |
ACAACATCTGGTCCTCTAGC+AGG | 0.532145 | 1.3:-18679329 | MS.gene061654:CDS |
AAGTATGCTGCTGAGGTGAA+TGG | 0.545777 | 1.3:+18680130 | None:intergenic |
TTGTAGGTCATTATTCCACT+TGG | 0.560547 | 1.3:-18679038 | MS.gene061654:intron |
AATTCTTCAAGTTGGAGGAG+TGG | 0.572161 | 1.3:-18679426 | MS.gene061654:CDS |
TATTAGTTGATATGAAGAGT+AGG | 0.579318 | 1.3:+18679306 | None:intergenic |
TTCACCTCAGCAGCATACTT+GGG | 0.589074 | 1.3:-18680127 | MS.gene061654:CDS |
GAGCAAATTCAGTTCTCACT+AGG | 0.589590 | 1.3:-18679879 | MS.gene061654:CDS |
AAAGTACATTGAAATTGCTA+CGG | 0.602017 | 1.3:-18678967 | MS.gene061654:CDS |
ACAAACCTTATCTTGCCAAG+TGG | 0.607201 | 1.3:+18679023 | None:intergenic |
ATCACCCAAGTATGCTGCTG+AGG | 0.611603 | 1.3:+18680123 | None:intergenic |
GTACATTGAAATTGCTACGG+TGG | 0.620058 | 1.3:-18678964 | MS.gene061654:CDS |
GCAACGGGACTCAAAGAACA+TGG | 0.647266 | 1.3:-18679823 | MS.gene061654:intron |
ATGAAGAGTAGGCCTGCTAG+AGG | 0.659927 | 1.3:+18679317 | None:intergenic |
TTAGTGTAAAAGATGGAGAG+AGG | 0.661609 | 1.3:-18679382 | MS.gene061654:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGTTTTTCTTTATATTTCT+TGG | + | chr1.3:18679074-18679093 | None:intergenic | 15.0% |
!! | TTAAAAATCATATGAAGCAA+AGG | + | chr1.3:18679961-18679980 | None:intergenic | 20.0% |
!!! | AATCATTATTTTTTCTCTTC+AGG | - | chr1.3:18679143-18679162 | MS.gene061654:intron | 20.0% |
!!! | AATTTTTTTAACCGCATTAT+TGG | - | chr1.3:18679354-18679373 | MS.gene061654:CDS | 20.0% |
! | AAAGTACATTGAAATTGCTA+CGG | - | chr1.3:18680080-18680099 | MS.gene061654:CDS | 25.0% |
! | AACATAACTGATACACTTAA+AGG | - | chr1.3:18679577-18679596 | MS.gene061654:intron | 25.0% |
! | ATTAAAATCTCTTCTCCAAA+AGG | - | chr1.3:18679790-18679809 | MS.gene061654:intron | 25.0% |
! | CAACTATTTAGTGTAAAAGA+TGG | - | chr1.3:18679658-18679677 | MS.gene061654:intron | 25.0% |
! | CTTTATTAGAACACATTACA+AGG | - | chr1.3:18679816-18679835 | MS.gene061654:intron | 25.0% |
! | TGTAATGTGTTCTAATAAAG+TGG | + | chr1.3:18679816-18679835 | None:intergenic | 25.0% |
! | TGTAATTTATCTATCCTTGT+AGG | - | chr1.3:18679993-18680012 | MS.gene061654:intron | 25.0% |
! | TTTAACAATGTAGTGAAACT+TGG | - | chr1.3:18679550-18679569 | MS.gene061654:intron | 25.0% |
!! | AGCAATTTCAATGTACTTTT+GGG | + | chr1.3:18680079-18680098 | None:intergenic | 25.0% |
!! | TAGCAATTTCAATGTACTTT+TGG | + | chr1.3:18680080-18680099 | None:intergenic | 25.0% |
!! | TATTAGTTGATATGAAGAGT+AGG | + | chr1.3:18679744-18679763 | None:intergenic | 25.0% |
!!! | GATTTTGAGTTTTGGTTTAT+GGG | - | chr1.3:18680108-18680127 | MS.gene061654:CDS | 25.0% |
!!! | TGATTTTGAGTTTTGGTTTA+TGG | - | chr1.3:18680107-18680126 | MS.gene061654:CDS | 25.0% |
AATTGATCTCTCACTACAAA+AGG | + | chr1.3:18679773-18679792 | None:intergenic | 30.0% | |
ATAGCTGTTAAGTACATGTT+TGG | - | chr1.3:18679868-18679887 | MS.gene061654:CDS | 30.0% | |
GATAAATCTCACCAATAATG+CGG | + | chr1.3:18679368-18679387 | None:intergenic | 30.0% | |
TGTTATCTATCAACAACATC+TGG | - | chr1.3:18679706-18679725 | MS.gene061654:intron | 30.0% | |
TTTCTTCAAGAGCTATTAGT+TGG | - | chr1.3:18678890-18678909 | MS.gene061654:CDS | 30.0% | |
! | AAAAGCTGACAATTTTGCAA+CGG | - | chr1.3:18679208-18679227 | MS.gene061654:intron | 30.0% |
!! | ATTTAGCTGACCATTTTTAG+TGG | - | chr1.3:18679410-18679429 | MS.gene061654:CDS | 30.0% |
!! | ATTTCAATGTACTTTTGGGT+AGG | + | chr1.3:18680075-18680094 | None:intergenic | 30.0% |
!! | GATGAAAAAAAGTGTCTAAG+AGG | + | chr1.3:18679443-18679462 | None:intergenic | 30.0% |
!!! | AGACACTTTTTTTCATCTAG+AGG | - | chr1.3:18679446-18679465 | MS.gene061654:CDS | 30.0% |
!!! | GACACTTTTTTTCATCTAGA+GGG | - | chr1.3:18679447-18679466 | MS.gene061654:CDS | 30.0% |
!!! | TTTAGCTGACCATTTTTAGT+GGG | - | chr1.3:18679411-18679430 | MS.gene061654:CDS | 30.0% |
AAGTGGAATAATGACCTACA+AGG | + | chr1.3:18680010-18680029 | None:intergenic | 35.0% | |
AATTCCTCGTTACGTAACAT+CGG | + | chr1.3:18679393-18679412 | None:intergenic | 35.0% | |
CAAAGGATTTAGTATCTGCA+TGG | + | chr1.3:18679944-18679963 | None:intergenic | 35.0% | |
CTTATTGTAGTAGTTGGACT+TGG | + | chr1.3:18678981-18679000 | None:intergenic | 35.0% | |
GATTTAGTATCTGCATGGAT+TGG | + | chr1.3:18679939-18679958 | None:intergenic | 35.0% | |
TCACTAGGATGAACAATCTT+GGG | - | chr1.3:18679183-18679202 | MS.gene061654:intron | 35.0% | |
TTAGTGTAAAAGATGGAGAG+AGG | - | chr1.3:18679665-18679684 | MS.gene061654:intron | 35.0% | |
TTATTCCACTTGGCAAGATA+AGG | - | chr1.3:18680019-18680038 | MS.gene061654:intron | 35.0% | |
TTGTAGGTCATTATTCCACT+TGG | - | chr1.3:18680009-18680028 | MS.gene061654:intron | 35.0% | |
! | AAAGCTGACAATTTTGCAAC+GGG | - | chr1.3:18679209-18679228 | MS.gene061654:intron | 35.0% |
! | ACAAGAGCATATGAGAAGAA+CGG | + | chr1.3:18679105-18679124 | None:intergenic | 35.0% |
! | GTTCTAATAAAGTGGCCTTT+TGG | + | chr1.3:18679808-18679827 | None:intergenic | 35.0% |
!!! | ACTTTGTTTTGAACTTGTGC+TGG | + | chr1.3:18679005-18679024 | None:intergenic | 35.0% |
ACAAACCTTATCTTGCCAAG+TGG | + | chr1.3:18680027-18680046 | None:intergenic | 40.0% | |
AGGAGAGATCCCACTAAAAA+TGG | + | chr1.3:18679423-18679442 | None:intergenic | 40.0% | |
CTCACTAGGATGAACAATCT+TGG | - | chr1.3:18679182-18679201 | MS.gene061654:intron | 40.0% | |
CTTAAAGGAAAGCTGAGCTT+AGG | - | chr1.3:18679592-18679611 | MS.gene061654:intron | 40.0% | |
GAGCAAATTCAGTTCTCACT+AGG | - | chr1.3:18679168-18679187 | MS.gene061654:intron | 40.0% | |
GCTGGACTTATTGTAGTAGT+TGG | + | chr1.3:18678987-18679006 | None:intergenic | 40.0% | |
GGAGCTAGAATTCTTCAAGT+TGG | - | chr1.3:18679613-18679632 | MS.gene061654:intron | 40.0% | |
GTACATTGAAATTGCTACGG+TGG | - | chr1.3:18680083-18680102 | MS.gene061654:CDS | 40.0% | |
!! | AATTCTTCAAGTTGGAGGAG+TGG | - | chr1.3:18679621-18679640 | MS.gene061654:intron | 40.0% |
!! | GCTAGAATTCTTCAAGTTGG+AGG | - | chr1.3:18679616-18679635 | MS.gene061654:intron | 40.0% |
!! | TTAGTATCTGCATGGATTGG+CGG | + | chr1.3:18679936-18679955 | None:intergenic | 40.0% |
!!! | CGGTGGATGATTTTGAGTTT+TGG | - | chr1.3:18680100-18680119 | MS.gene061654:CDS | 40.0% |
AAGTATGCTGCTGAGGTGAA+TGG | + | chr1.3:18678920-18678939 | None:intergenic | 45.0% | |
ATTCACCTCAGCAGCATACT+TGG | - | chr1.3:18678919-18678938 | MS.gene061654:CDS | 45.0% | |
GTATCGCGTAGGCAATGTTT+CGG | + | chr1.3:18679480-18679499 | None:intergenic | 45.0% | |
TATCGCGTAGGCAATGTTTC+GGG | + | chr1.3:18679479-18679498 | None:intergenic | 45.0% | |
TTCACCTCAGCAGCATACTT+GGG | - | chr1.3:18678920-18678939 | MS.gene061654:CDS | 45.0% | |
! | TCCTTTTACTCGTATCGCGT+AGG | + | chr1.3:18679491-18679510 | None:intergenic | 45.0% |
!! | TCAAGTTGGAGGAGTGGAAA+AGG | - | chr1.3:18679627-18679646 | MS.gene061654:intron | 45.0% |
ACAACATCTGGTCCTCTAGC+AGG | - | chr1.3:18679718-18679737 | MS.gene061654:intron | 50.0% | |
ATCACCCAAGTATGCTGCTG+AGG | + | chr1.3:18678927-18678946 | None:intergenic | 50.0% | |
ATGAAGAGTAGGCCTGCTAG+AGG | + | chr1.3:18679733-18679752 | None:intergenic | 50.0% | |
GCAACGGGACTCAAAGAACA+TGG | - | chr1.3:18679224-18679243 | MS.gene061654:intron | 50.0% | |
GCCTACGCGATACGAGTAAA+AGG | - | chr1.3:18679487-18679506 | MS.gene061654:CDS | 50.0% | |
TCCACCGATGTTACGTAACG+AGG | - | chr1.3:18679386-18679405 | MS.gene061654:CDS | 50.0% | |
TCCTCGTTACGTAACATCGG+TGG | + | chr1.3:18679390-18679409 | None:intergenic | 50.0% | |
!! | GCATGGATTGGCGGTGAGTT+TGG | + | chr1.3:18679927-18679946 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 18678881 | 18680188 | 18678881 | ID=MS.gene061654 |
chr1.3 | mRNA | 18678881 | 18680188 | 18678881 | ID=MS.gene061654.t1;Parent=MS.gene061654 |
chr1.3 | exon | 18680047 | 18680188 | 18680047 | ID=MS.gene061654.t1.exon1;Parent=MS.gene061654.t1 |
chr1.3 | CDS | 18680047 | 18680188 | 18680047 | ID=cds.MS.gene061654.t1;Parent=MS.gene061654.t1 |
chr1.3 | exon | 18679824 | 18679904 | 18679824 | ID=MS.gene061654.t1.exon2;Parent=MS.gene061654.t1 |
chr1.3 | CDS | 18679824 | 18679904 | 18679824 | ID=cds.MS.gene061654.t1;Parent=MS.gene061654.t1 |
chr1.3 | exon | 18679232 | 18679506 | 18679232 | ID=MS.gene061654.t1.exon3;Parent=MS.gene061654.t1 |
chr1.3 | CDS | 18679232 | 18679506 | 18679232 | ID=cds.MS.gene061654.t1;Parent=MS.gene061654.t1 |
chr1.3 | exon | 18678881 | 18679054 | 18678881 | ID=MS.gene061654.t1.exon4;Parent=MS.gene061654.t1 |
chr1.3 | CDS | 18678881 | 18679054 | 18678881 | ID=cds.MS.gene061654.t1;Parent=MS.gene061654.t1 |
Gene Sequence |
Protein sequence |