Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93119.t1 | GAU18093.1 | 84.5 | 187 | 29 | 0 | 1 | 187 | 1 | 187 | 3.50E-81 | 311.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93119.t1 | Q9FTA0 | 55.8 | 165 | 62 | 3 | 28 | 187 | 23 | 181 | 5.2e-41 | 169.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93119.t1 | A0A2Z6M7E6 | 84.5 | 187 | 29 | 0 | 1 | 187 | 1 | 187 | 2.5e-81 | 311.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053479 | MS.gene93119 | -0.813654 | 2.29E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene93119 | -0.81161 | 6.42E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene93119 | -0.805126 | 1.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061654 | MS.gene93119 | PPI |
| MS.gene93119 | MS.gene040857 | PPI |
| MS.gene037373 | MS.gene93119 | PPI |
| MS.gene93120 | MS.gene93119 | PPI |
| MS.gene93119 | MS.gene061035 | PPI |
| MS.gene93119 | MS.gene037374 | PPI |
| MS.gene93121 | MS.gene93119 | PPI |
| MS.gene061035 | MS.gene93119 | PPI |
| MS.gene93119 | MS.gene037375 | PPI |
| MS.gene026428 | MS.gene93119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93119.t1 | MTR_1g114640 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.97e-112 | 320 |
| MS.gene93119.t1 | MTR_1g114640 | 81.818 | 165 | 30 | 0 | 1 | 165 | 1 | 165 | 9.87e-96 | 276 |
| MS.gene93119.t1 | MTR_1g033750 | 59.804 | 204 | 79 | 2 | 5 | 205 | 4 | 207 | 1.32e-76 | 229 |
| MS.gene93119.t1 | MTR_1g114690 | 50.794 | 189 | 86 | 3 | 1 | 187 | 1 | 184 | 8.03e-55 | 174 |
| MS.gene93119.t1 | MTR_1g114690 | 49.198 | 187 | 92 | 2 | 1 | 187 | 1 | 184 | 3.50e-54 | 172 |
| MS.gene93119.t1 | MTR_1g114750 | 47.619 | 189 | 95 | 2 | 1 | 187 | 1 | 187 | 3.24e-53 | 170 |
| MS.gene93119.t1 | MTR_1g114690 | 43.498 | 223 | 85 | 4 | 1 | 187 | 1 | 218 | 6.23e-48 | 157 |
| MS.gene93119.t1 | MTR_6g077990 | 53.793 | 145 | 59 | 2 | 65 | 205 | 43 | 183 | 2.00e-46 | 152 |
| MS.gene93119.t1 | MTR_6g077990 | 53.793 | 145 | 59 | 2 | 65 | 205 | 42 | 182 | 2.09e-46 | 152 |
| MS.gene93119.t1 | MTR_1g114690 | 50.000 | 168 | 77 | 3 | 1 | 166 | 1 | 163 | 6.31e-46 | 151 |
| MS.gene93119.t1 | MTR_1g115130 | 42.927 | 205 | 90 | 3 | 1 | 205 | 1 | 178 | 1.31e-43 | 145 |
| MS.gene93119.t1 | MTR_8g100065 | 50.993 | 151 | 65 | 3 | 60 | 205 | 23 | 169 | 4.70e-43 | 143 |
| MS.gene93119.t1 | MTR_6g077990 | 54.015 | 137 | 55 | 2 | 73 | 205 | 8 | 140 | 1.57e-42 | 140 |
| MS.gene93119.t1 | MTR_8g100065 | 50.993 | 151 | 65 | 3 | 60 | 205 | 45 | 191 | 1.66e-42 | 142 |
| MS.gene93119.t1 | MTR_6g077990 | 58.095 | 105 | 44 | 0 | 65 | 169 | 42 | 146 | 4.82e-38 | 129 |
| MS.gene93119.t1 | MTR_8g100065 | 57.009 | 107 | 45 | 1 | 60 | 165 | 23 | 129 | 2.12e-36 | 124 |
| MS.gene93119.t1 | MTR_8g100065 | 57.009 | 107 | 45 | 1 | 60 | 165 | 45 | 151 | 5.59e-36 | 124 |
| MS.gene93119.t1 | MTR_5g015750 | 80.556 | 72 | 14 | 0 | 1 | 72 | 1 | 72 | 6.67e-35 | 120 |
| MS.gene93119.t1 | MTR_1g114680 | 85.714 | 77 | 11 | 0 | 111 | 187 | 53 | 129 | 3.17e-31 | 112 |
| MS.gene93119.t1 | MTR_7g083570 | 32.215 | 149 | 101 | 0 | 28 | 176 | 84 | 232 | 1.16e-24 | 98.2 |
| MS.gene93119.t1 | MTR_3g100750 | 35.766 | 137 | 81 | 3 | 71 | 202 | 109 | 243 | 2.73e-23 | 94.0 |
| MS.gene93119.t1 | MTR_8g069110 | 31.176 | 170 | 98 | 4 | 50 | 205 | 90 | 254 | 3.18e-22 | 91.7 |
| MS.gene93119.t1 | MTR_2g076350 | 41.176 | 102 | 59 | 1 | 46 | 146 | 52 | 153 | 7.78e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93119.t1 | AT5G08350 | 52.459 | 183 | 76 | 3 | 28 | 205 | 23 | 199 | 2.78e-55 | 175 |
| MS.gene93119.t1 | AT5G23370 | 48.293 | 205 | 101 | 1 | 1 | 205 | 1 | 200 | 4.00e-55 | 175 |
| MS.gene93119.t1 | AT5G23350 | 56.364 | 165 | 62 | 2 | 28 | 187 | 23 | 182 | 4.39e-54 | 172 |
| MS.gene93119.t1 | AT5G23360 | 47.525 | 202 | 87 | 4 | 1 | 197 | 1 | 188 | 3.35e-52 | 167 |
| MS.gene93119.t1 | AT4G01600 | 36.905 | 168 | 98 | 2 | 46 | 205 | 5 | 172 | 7.91e-30 | 109 |
| MS.gene93119.t1 | AT4G01600 | 34.343 | 198 | 121 | 3 | 16 | 205 | 15 | 211 | 1.54e-29 | 109 |
| MS.gene93119.t1 | AT4G01600 | 34.694 | 196 | 118 | 4 | 16 | 205 | 15 | 206 | 1.95e-26 | 101 |
| MS.gene93119.t1 | AT5G13200 | 31.373 | 153 | 105 | 0 | 35 | 187 | 77 | 229 | 6.04e-24 | 96.3 |
| MS.gene93119.t1 | AT1G28200 | 35.664 | 143 | 85 | 3 | 60 | 197 | 97 | 237 | 1.17e-22 | 92.4 |
| MS.gene93119.t1 | AT1G28200 | 35.664 | 143 | 85 | 3 | 60 | 197 | 97 | 237 | 1.17e-22 | 92.4 |
| MS.gene93119.t1 | AT5G13200 | 32.576 | 132 | 89 | 0 | 35 | 166 | 77 | 208 | 2.07e-22 | 90.9 |
| MS.gene93119.t1 | AT2G22475 | 32.895 | 152 | 91 | 4 | 59 | 205 | 133 | 278 | 6.11e-21 | 88.6 |
| MS.gene93119.t1 | AT2G22475 | 39.241 | 79 | 48 | 0 | 71 | 149 | 145 | 223 | 5.05e-16 | 74.3 |
Find 39 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTCACAAAGTTGCTTTC+TGG | 0.165974 | 1.1:-80532771 | MS.gene93119:CDS |
| TTCCTTCATGAGCTACTTAA+TGG | 0.213634 | 1.1:-80533632 | MS.gene93119:CDS |
| GCGTAGATGGTTTCGACTTC+TGG | 0.218018 | 1.1:-80532515 | MS.gene93119:CDS |
| AAGATAACAGATACAGTAAA+AGG | 0.228633 | 1.1:-80532949 | MS.gene93119:CDS |
| TTTACTGTATCTGTTATCTT+TGG | 0.247894 | 1.1:+80532952 | None:intergenic |
| ACTCTAATCAATTCTCCTTT+TGG | 0.287784 | 1.1:+80532721 | None:intergenic |
| AGATACTTGGCCGATTCTTC+TGG | 0.307658 | 1.1:-80533566 | MS.gene93119:CDS |
| ATACAGTAAAAGGGAAATTA+AGG | 0.314014 | 1.1:-80532939 | MS.gene93119:CDS |
| CTGACTAAGATGAACATGTT+TGG | 0.338683 | 1.1:-80533203 | MS.gene93119:CDS |
| TGTTACTTATCAACCACATT+AGG | 0.368586 | 1.1:-80532820 | MS.gene93119:CDS |
| TGACTAAGATGAACATGTTT+GGG | 0.379362 | 1.1:-80533202 | MS.gene93119:CDS |
| GATGAACATGTTTGGGAGAA+AGG | 0.393124 | 1.1:-80533195 | MS.gene93119:CDS |
| ATTGATTAGAGTTCTCTATA+AGG | 0.399862 | 1.1:-80532710 | MS.gene93119:intron |
| AGTAAAAGGGAAATTAAGGT+TGG | 0.443877 | 1.1:-80532935 | MS.gene93119:CDS |
| GTTGTATATGCCAGAAGAAT+CGG | 0.444156 | 1.1:+80533556 | None:intergenic |
| GGAGGCAAAATTATTCAAGT+TGG | 0.454364 | 1.1:-80532913 | MS.gene93119:CDS |
| ATGAACATGTTTGGGAGAAA+GGG | 0.454867 | 1.1:-80533194 | MS.gene93119:CDS |
| GGCAAAATTATTCAAGTTGG+AGG | 0.471062 | 1.1:-80532910 | MS.gene93119:CDS |
| ATCACCTCAACTCATTCAGT+TGG | 0.473136 | 1.1:-80533602 | MS.gene93119:CDS |
| ATAGAAATAGTCAGCGTAGA+TGG | 0.474979 | 1.1:-80532528 | MS.gene93119:CDS |
| ATGAAGAGGAGGCCAGCTAT+AGG | 0.476519 | 1.1:+80532796 | None:intergenic |
| CTGTAACCTGCAGTGAGACT+TGG | 0.489945 | 1.1:-80532976 | MS.gene93119:intron |
| ATCAAGATCTCGTCACCAAA+AGG | 0.523407 | 1.1:-80532736 | MS.gene93119:CDS |
| GTAAAAGGGAAATTAAGGTT+GGG | 0.528971 | 1.1:-80532934 | MS.gene93119:CDS |
| TCACCTCAACTCATTCAGTT+GGG | 0.537734 | 1.1:-80533601 | MS.gene93119:CDS |
| AGATAACAGATACAGTAAAA+GGG | 0.540258 | 1.1:-80532948 | MS.gene93119:CDS |
| GTGTATGCAGTCCGAGAGCA+TGG | 0.564348 | 1.1:-80533161 | MS.gene93119:intron |
| CTGATTACATACCATGCTCT+CGG | 0.564630 | 1.1:+80533150 | None:intergenic |
| ATGTTTGGGAGAAAGGGTGA+TGG | 0.565214 | 1.1:-80533188 | MS.gene93119:CDS |
| TCCATTACAAAATCAAAGCA+AGG | 0.583726 | 1.1:-80533530 | MS.gene93119:intron |
| TTCCATTAAGTAGCTCATGA+AGG | 0.584791 | 1.1:+80533630 | None:intergenic |
| GAAGTCATCAAAGAGATACT+TGG | 0.585940 | 1.1:-80533579 | MS.gene93119:CDS |
| ACCACATTAGGTCCTATAGC+TGG | 0.588201 | 1.1:-80532808 | MS.gene93119:CDS |
| CCAGAAAGCAACTTTGTGAG+TGG | 0.608051 | 1.1:+80532771 | None:intergenic |
| CTTTGTGAGTGGATATGAAG+AGG | 0.608902 | 1.1:+80532782 | None:intergenic |
| AAAGGGAAATTAAGGTTGGG+AGG | 0.624997 | 1.1:-80532931 | MS.gene93119:CDS |
| GCCAGCTATAGGACCTAATG+TGG | 0.654715 | 1.1:+80532807 | None:intergenic |
| TGTGAGTGGATATGAAGAGG+AGG | 0.670894 | 1.1:+80532785 | None:intergenic |
| CTTCCCAACTGAATGAGTTG+AGG | 0.692685 | 1.1:+80533598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAATTTAATTCATCA+TGG | - | chr1.1:80532881-80532900 | MS.gene93119:CDS | 10.0% |
| !! | TTGTTGCAACAAAAAAAAAA+TGG | + | chr1.1:80532779-80532798 | None:intergenic | 20.0% |
| !!! | AAATACAGTTTTGTTAATGT+AGG | + | chr1.1:80532648-80532667 | None:intergenic | 20.0% |
| !!! | AATGAAGTTTTAACTGATAA+TGG | - | chr1.1:80533130-80533149 | MS.gene93119:intron | 20.0% |
| !!! | ATGGTCATTTTTATATTTTC+AGG | - | chr1.1:80532900-80532919 | MS.gene93119:CDS | 20.0% |
| !!! | CTTAATTTGTTTACTATTTC+AGG | - | chr1.1:80533519-80533538 | MS.gene93119:intron | 20.0% |
| ! | AAGATAACAGATACAGTAAA+AGG | - | chr1.1:80533193-80533212 | MS.gene93119:CDS | 25.0% |
| ! | AAGTGTGAAGAAAAGATAAA+AGG | + | chr1.1:80533502-80533521 | None:intergenic | 25.0% |
| ! | AGATAACAGATACAGTAAAA+GGG | - | chr1.1:80533194-80533213 | MS.gene93119:CDS | 25.0% |
| ! | ATACAGTAAAAGGGAAATTA+AGG | - | chr1.1:80533203-80533222 | MS.gene93119:CDS | 25.0% |
| ! | ATCAATGAAAAATTGAAGGT+TGG | + | chr1.1:80533031-80533050 | None:intergenic | 25.0% |
| ! | ATTGATTAGAGTTCTCTATA+AGG | - | chr1.1:80533432-80533451 | MS.gene93119:intron | 25.0% |
| ! | TGGAATCAATGAAAAATTGA+AGG | + | chr1.1:80533035-80533054 | None:intergenic | 25.0% |
| ! | TTTACTGTATCTGTTATCTT+TGG | + | chr1.1:80533193-80533212 | None:intergenic | 25.0% |
| !! | TATACTTTGAGTTTGAACTT+TGG | - | chr1.1:80533091-80533110 | MS.gene93119:intron | 25.0% |
| !!! | TTTCTATGTACTTTTTCTGA+AGG | + | chr1.1:80533601-80533620 | None:intergenic | 25.0% |
| AAACTACTATACAATGCTCT+TGG | + | chr1.1:80533055-80533074 | None:intergenic | 30.0% | |
| AAGTATACATCATAGCAGTT+TGG | + | chr1.1:80533078-80533097 | None:intergenic | 30.0% | |
| AGTAAAAGGGAAATTAAGGT+TGG | - | chr1.1:80533207-80533226 | MS.gene93119:CDS | 30.0% | |
| CAATCAAAATAACTGATGTC+CGG | - | chr1.1:80532733-80532752 | MS.gene93119:CDS | 30.0% | |
| GTAAAAGGGAAATTAAGGTT+GGG | - | chr1.1:80533208-80533227 | MS.gene93119:CDS | 30.0% | |
| TACAAAATCAAAGCAAGGTA+TGG | - | chr1.1:80532617-80532636 | MS.gene93119:intron | 30.0% | |
| TCCATTACAAAATCAAAGCA+AGG | - | chr1.1:80532612-80532631 | MS.gene93119:intron | 30.0% | |
| TGACTAAGATGAACATGTTT+GGG | - | chr1.1:80532940-80532959 | MS.gene93119:CDS | 30.0% | |
| ! | ACTCTAATCAATTCTCCTTT+TGG | + | chr1.1:80533424-80533443 | None:intergenic | 30.0% |
| ! | TGTTACTTATCAACCACATT+AGG | - | chr1.1:80533322-80533341 | MS.gene93119:intron | 30.0% |
| !! | ACCTTGCTTTGATTTTGTAA+TGG | + | chr1.1:80532616-80532635 | None:intergenic | 30.0% |
| AACTTCCCAACAAAATGTCT+CGG | + | chr1.1:80532825-80532844 | None:intergenic | 35.0% | |
| ATAGAAATAGTCAGCGTAGA+TGG | - | chr1.1:80533614-80533633 | MS.gene93119:CDS | 35.0% | |
| ATGAACATGTTTGGGAGAAA+GGG | - | chr1.1:80532948-80532967 | MS.gene93119:CDS | 35.0% | |
| CTGACTAAGATGAACATGTT+TGG | - | chr1.1:80532939-80532958 | MS.gene93119:CDS | 35.0% | |
| GAAGTCATCAAAGAGATACT+TGG | - | chr1.1:80532563-80532582 | MS.gene93119:CDS | 35.0% | |
| GGAGGCAAAATTATTCAAGT+TGG | - | chr1.1:80533229-80533248 | MS.gene93119:intron | 35.0% | |
| GTTGTATATGCCAGAAGAAT+CGG | + | chr1.1:80532589-80532608 | None:intergenic | 35.0% | |
| TTCCATTAAGTAGCTCATGA+AGG | + | chr1.1:80532515-80532534 | None:intergenic | 35.0% | |
| TTCCTTCATGAGCTACTTAA+TGG | - | chr1.1:80532510-80532529 | MS.gene93119:CDS | 35.0% | |
| ! | ACATGCTGTATCTTTTCATG+TGG | + | chr1.1:80533553-80533572 | None:intergenic | 35.0% |
| ! | TTCATTCGGGTTAAATAGCA+TGG | + | chr1.1:80532679-80532698 | None:intergenic | 35.0% |
| !! | AAGGAATGAGAGCATTTACA+TGG | + | chr1.1:80533483-80533502 | None:intergenic | 35.0% |
| !! | GGCAAAATTATTCAAGTTGG+AGG | - | chr1.1:80533232-80533251 | MS.gene93119:intron | 35.0% |
| !!! | CGGACATCAGTTATTTTGAT+TGG | + | chr1.1:80532735-80532754 | None:intergenic | 35.0% |
| !!! | GCTTCTTCACATTTTGACTT+TGG | + | chr1.1:80533579-80533598 | None:intergenic | 35.0% |
| AAAGGGAAATTAAGGTTGGG+AGG | - | chr1.1:80533211-80533230 | MS.gene93119:CDS | 40.0% | |
| ACTTCCCAACAAAATGTCTC+GGG | + | chr1.1:80532824-80532843 | None:intergenic | 40.0% | |
| AGTTTGAACTTTGGCGTGAT+TGG | - | chr1.1:80533100-80533119 | MS.gene93119:intron | 40.0% | |
| ATCAAGATCTCGTCACCAAA+AGG | - | chr1.1:80533406-80533425 | MS.gene93119:intron | 40.0% | |
| ATCACCTCAACTCATTCAGT+TGG | - | chr1.1:80532540-80532559 | MS.gene93119:CDS | 40.0% | |
| CTGATTACATACCATGCTCT+CGG | + | chr1.1:80532995-80533014 | None:intergenic | 40.0% | |
| CTTTGTGAGTGGATATGAAG+AGG | + | chr1.1:80533363-80533382 | None:intergenic | 40.0% | |
| GATGAACATGTTTGGGAGAA+AGG | - | chr1.1:80532947-80532966 | MS.gene93119:CDS | 40.0% | |
| TAACTGATGTCCGGAATTCA+CGG | - | chr1.1:80532742-80532761 | MS.gene93119:CDS | 40.0% | |
| TCACCTCAACTCATTCAGTT+GGG | - | chr1.1:80532541-80532560 | MS.gene93119:CDS | 40.0% | |
| ! | AACCTCGGGATGTTTTCATT+CGG | + | chr1.1:80532693-80532712 | None:intergenic | 40.0% |
| ! | AACTTTTCAGCGTACAAGAC+GGG | - | chr1.1:80533275-80533294 | MS.gene93119:intron | 40.0% |
| ! | ATGTCCCGAGACATTTTGTT+GGG | - | chr1.1:80532817-80532836 | MS.gene93119:CDS | 40.0% |
| ! | CAACTTTTCAGCGTACAAGA+CGG | - | chr1.1:80533274-80533293 | MS.gene93119:intron | 40.0% |
| ! | TATGTCCCGAGACATTTTGT+TGG | - | chr1.1:80532816-80532835 | MS.gene93119:CDS | 40.0% |
| !!! | GGTTTCGACTTCTGGTTTTT+GGG | - | chr1.1:80533635-80533654 | MS.gene93119:CDS | 40.0% |
| !!! | TGGTTTCGACTTCTGGTTTT+TGG | - | chr1.1:80533634-80533653 | MS.gene93119:CDS | 40.0% |
| !!! | TTTTGGTGACGAGATCTTGA+TGG | + | chr1.1:80533407-80533426 | None:intergenic | 40.0% |
| ACCACATTAGGTCCTATAGC+TGG | - | chr1.1:80533334-80533353 | MS.gene93119:intron | 45.0% | |
| ATGTTTGGGAGAAAGGGTGA+TGG | - | chr1.1:80532954-80532973 | MS.gene93119:CDS | 45.0% | |
| CCAGAAAGCAACTTTGTGAG+TGG | + | chr1.1:80533374-80533393 | None:intergenic | 45.0% | |
| CTTCCCAACTGAATGAGTTG+AGG | + | chr1.1:80532547-80532566 | None:intergenic | 45.0% | |
| TGTGAGTGGATATGAAGAGG+AGG | + | chr1.1:80533360-80533379 | None:intergenic | 45.0% | |
| ! | ACCTCGGGATGTTTTCATTC+GGG | + | chr1.1:80532692-80532711 | None:intergenic | 45.0% |
| ! | ACTTTTCAGCGTACAAGACG+GGG | - | chr1.1:80533276-80533295 | MS.gene93119:intron | 45.0% |
| ! | AGATACTTGGCCGATTCTTC+TGG | - | chr1.1:80532576-80532595 | MS.gene93119:CDS | 45.0% |
| ! | CCACTCACAAAGTTGCTTTC+TGG | - | chr1.1:80533371-80533390 | MS.gene93119:intron | 45.0% |
| !! | TGATTGGCTGCTGCTTTGTT+CGG | + | chr1.1:80532719-80532738 | None:intergenic | 45.0% |
| !! | TGAATTAAATTATATTAAAT+TGG | + | chr1.1:80532878-80532897 | None:intergenic | 5.0% |
| ACCACTACCTCCGTGAATTC+CGG | + | chr1.1:80532755-80532774 | None:intergenic | 50.0% | |
| ACCCGAATGAAAACATCCCG+AGG | - | chr1.1:80532688-80532707 | MS.gene93119:intron | 50.0% | |
| ATGAAGAGGAGGCCAGCTAT+AGG | + | chr1.1:80533349-80533368 | None:intergenic | 50.0% | |
| CTGTAACCTGCAGTGAGACT+TGG | - | chr1.1:80533166-80533185 | MS.gene93119:CDS | 50.0% | |
| GCCAGCTATAGGACCTAATG+TGG | + | chr1.1:80533338-80533357 | None:intergenic | 50.0% | |
| GCGTAGATGGTTTCGACTTC+TGG | - | chr1.1:80533627-80533646 | MS.gene93119:CDS | 50.0% | |
| GTCTCGGGACATATTCACGA+TGG | + | chr1.1:80532809-80532828 | None:intergenic | 50.0% | |
| TTTGGTCCAAGTCTCACTGC+AGG | + | chr1.1:80533175-80533194 | None:intergenic | 50.0% | |
| ! | TGCTTTGTTCGGGACAACCT+CGG | + | chr1.1:80532708-80532727 | None:intergenic | 50.0% |
| !! | GATTGGCTGCTGCTTTGTTC+GGG | + | chr1.1:80532718-80532737 | None:intergenic | 50.0% |
| CTGATGTCCGGAATTCACGG+AGG | - | chr1.1:80532745-80532764 | MS.gene93119:CDS | 55.0% | |
| GTGTATGCAGTCCGAGAGCA+TGG | - | chr1.1:80532981-80533000 | MS.gene93119:intron | 55.0% | |
| TCCGGAATTCACGGAGGTAG+TGG | - | chr1.1:80532751-80532770 | MS.gene93119:CDS | 55.0% | |
| ! | GCTTTGTTCGGGACAACCTC+GGG | + | chr1.1:80532707-80532726 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80532498 | 80533666 | 80532498 | ID=MS.gene93119 |
| chr1.1 | mRNA | 80532498 | 80533666 | 80532498 | ID=MS.gene93119.t1;Parent=MS.gene93119 |
| chr1.1 | exon | 80533531 | 80533666 | 80533531 | ID=MS.gene93119.t1.exon1;Parent=MS.gene93119.t1 |
| chr1.1 | CDS | 80533531 | 80533666 | 80533531 | ID=cds.MS.gene93119.t1;Parent=MS.gene93119.t1 |
| chr1.1 | exon | 80533162 | 80533242 | 80533162 | ID=MS.gene93119.t1.exon2;Parent=MS.gene93119.t1 |
| chr1.1 | CDS | 80533162 | 80533242 | 80533162 | ID=cds.MS.gene93119.t1;Parent=MS.gene93119.t1 |
| chr1.1 | exon | 80532711 | 80532985 | 80532711 | ID=MS.gene93119.t1.exon3;Parent=MS.gene93119.t1 |
| chr1.1 | CDS | 80532711 | 80532985 | 80532711 | ID=cds.MS.gene93119.t1;Parent=MS.gene93119.t1 |
| chr1.1 | exon | 80532498 | 80532623 | 80532498 | ID=MS.gene93119.t1.exon4;Parent=MS.gene93119.t1 |
| chr1.1 | CDS | 80532498 | 80532623 | 80532498 | ID=cds.MS.gene93119.t1;Parent=MS.gene93119.t1 |
| Gene Sequence |
| Protein sequence |
