AlfalfaGEDB | MS.gene06185

M. sativa cultivar XinJiangDaYe / MS.gene06185

KEGG: K01489
GO: GO:0003674 GO:0003824 GO:0004126 GO:0005488 GO:0006139 GO:0006213 GO:0006216 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009116 GO:0009119 GO:0009164 GO:0009972 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0019439 GO:0034641 GO:0034655 GO:0034656 GO:0042454 GO:0043167 GO:0043169 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0046087 GO:0046131 GO:0046133 GO:0046135 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0055086 GO:0071704 GO:0072527 GO:0072529 GO:1901135 GO:1901136 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658
PFAM: PF00383.26 PF08211.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06185.t1	XP_003630631.1	93.5	292	13	1	1	292	1	286	5.10E-150	540.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06185.t1	O65896	57.0	307	108	5	1	292	1	298	8.2e-88	325.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06185.t1	G7LJJ4	93.5	292	13	1	1	292	1	286	3.7e-150	540.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene06185	MS.gene55838	PPI
MS.gene06185	MS.gene048972	PPI
MS.gene06185	MS.gene06119	PPI
MS.gene06185	MS.gene20200	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06185.t1	MTR_8g101570	93.493	292	13	1	1	292	1	286	0.0	555
MS.gene06185.t1	MTR_6g092660	59.333	300	108	4	1	293	1	293	1.07e-121	350

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06185.t1	AT2G19570	57.003	307	108	5	1	292	1	298	7.40e-117	338
MS.gene06185.t1	AT4G29600	49.020	306	133	7	2	295	5	299	2.63e-90	271
MS.gene06185.t1	AT4G29610	50.365	274	120	5	28	292	21	287	8.73e-89	266
MS.gene06185.t1	AT4G29620	45.395	304	139	7	2	295	26	312	5.15e-78	241
MS.gene06185.t1	AT4G29640	43.206	287	147	7	16	292	13	293	2.48e-64	206
MS.gene06185.t1	AT4G29630	48.918	231	97	5	2	222	4	223	4.44e-62	196
MS.gene06185.t1	AT4G29570	42.446	278	141	7	26	292	23	292	5.23e-58	188
MS.gene06185.t1	AT4G29650	38.062	289	127	7	6	292	7	245	7.79e-49	163
MS.gene06185.t1	AT4G29580	39.726	292	151	10	4	282	7	286	1.01e-48	164
MS.gene06185.t1	AT4G29580	39.726	292	151	10	4	282	7	286	1.20e-47	165

Find 112 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAGACAGAGAAGTGAAATT+TGG	0.221554	4.2:+3388125	None:intergenic
GACAGCTCCGACGTGGAAAT+TGG	0.275635	4.2:+3388382	None:intergenic
CGGGTGCTCCGCGGATTTCT+TGG	0.278140	4.2:+3388180	None:intergenic
TCCTAGTTTGGGTCCTCTTC+AGG	0.279807	4.2:-3387820	MS.gene06185:CDS
TGAAGATTTGGCCATGGATT+TGG	0.298830	4.2:+3388475	None:intergenic
TGGGTGGTCGGGCGAGGGAT+TGG	0.308461	4.2:+3388408	None:intergenic
AAAGTCTGCAATTGACATTT+AGG	0.308869	4.2:+3387666	None:intergenic
GGTAATGATGATTTGAATAT+CGG	0.323221	4.2:+3388160	None:intergenic
GGGTGGTCGGGCGAGGGATT+GGG	0.334841	4.2:+3388409	None:intergenic
GGCGGCGTTTAATCCTAGTT+TGG	0.341522	4.2:-3387832	MS.gene06185:CDS
CCAGATGGTGAATTACTATA+AGG	0.358174	4.2:+3387909	None:intergenic
GAGAGTGAGGGATGAAGATT+TGG	0.361013	4.2:+3388463	None:intergenic
TCCTCTTCAGGCTGCGGTGG+TGG	0.366749	4.2:-3387808	MS.gene06185:CDS
GCGGCGTTTAATCCTAGTTT+GGG	0.380242	4.2:-3387831	MS.gene06185:CDS
CCTTATAGTAATTCACCATC+TGG	0.384670	4.2:-3387909	MS.gene06185:CDS
GAGACAGAGAAGTGAAATTT+GGG	0.388256	4.2:+3388126	None:intergenic
GGATTTCTTGGAAGAATTGC+CGG	0.395040	4.2:+3388192	None:intergenic
GAATTGCCGGCAGTGGCCAC+AGG	0.404218	4.2:+3388205	None:intergenic
CCGGCAGTGGCCACAGGGAG+CGG	0.421277	4.2:+3388211	None:intergenic
GCGTTTATTGTCGCCGGCGG+CGG	0.423175	4.2:-3387786	MS.gene06185:CDS
GATAGTTTCTCTGTTGTTAA+CGG	0.423842	4.2:+3388011	None:intergenic
GACGGCAAATGAGTGGAGAT+TGG	0.429471	4.2:+3388238	None:intergenic
TGACAAGTGATGGGAGGAGT+TGG	0.430025	4.2:+3388438	None:intergenic
GGAGGAGTTGGGTGAGAGTG+AGG	0.430382	4.2:+3388450	None:intergenic
TTTGGCCATGGATTTGGCTT+CGG	0.430920	4.2:+3388481	None:intergenic
CCATCGGGTCGGATCTTAAT+CGG	0.432605	4.2:-3388350	MS.gene06185:CDS
TGGAGATGGGTGGTCGGGCG+AGG	0.432898	4.2:+3388402	None:intergenic
TCGGGCGAGGGATTGGGCGG+AGG	0.439797	4.2:+3388415	None:intergenic
AGTGAAATTTGGGTCAGATT+CGG	0.443529	4.2:+3388136	None:intergenic
GAAGCTAAAGATTGCGGCTA+TGG	0.452033	4.2:-3387955	MS.gene06185:CDS
GAAATTGGAGATGGGTGGTC+GGG	0.455841	4.2:+3388397	None:intergenic
CCGCTCCCTGTGGCCACTGC+CGG	0.461973	4.2:-3388211	MS.gene06185:CDS
AGTGATGAAGAGGGAGGCCT+GGG	0.468579	4.2:+3388312	None:intergenic
TAAAGGATCTTATGTTGAAT+CGG	0.470270	4.2:-3387853	MS.gene06185:CDS
CTTGGAAGAATTGCCGGCAG+TGG	0.473200	4.2:+3388198	None:intergenic
TGGGCGGAGGTGACAAGTGA+TGG	0.473273	4.2:+3388428	None:intergenic
GACAAGTGATGGGAGGAGTT+GGG	0.474173	4.2:+3388439	None:intergenic
GAGAAACTGTTCGGCGTGGA+TGG	0.474486	4.2:+3388289	None:intergenic
ACGGCAAATGAGTGGAGATT+GGG	0.480319	4.2:+3388239	None:intergenic
GAGTGATGAAGAGGGAGGCC+TGG	0.482748	4.2:+3388311	None:intergenic
ATCACCGTTGCAAACGCCAT+TGG	0.486585	4.2:+3387989	None:intergenic
ACCATCTGGGATGGCGATTG+TGG	0.487559	4.2:-3387895	MS.gene06185:CDS
GCCACAGGGAGCGGCGGAGA+CGG	0.489161	4.2:+3388220	None:intergenic
GGCCATGGATTTGGCTTCGG+TGG	0.493035	4.2:+3388484	None:intergenic
AATTTCCACGTCGGAGCTGT+CGG	0.496820	4.2:-3388380	MS.gene06185:CDS
AAAACAGAGGAGCGTGTTGA+GGG	0.498221	4.2:+3388066	None:intergenic
CCGATTAAGATCCGACCCGA+TGG	0.499542	4.2:+3388350	None:intergenic
CGGAAGAAGCTTTAACCCGT+TGG	0.502023	4.2:+3388031	None:intergenic
GCCACCACCGCAGCCTGAAG+AGG	0.504864	4.2:+3387807	None:intergenic
GGGTCCTCTTCAGGCTGCGG+TGG	0.509491	4.2:-3387811	MS.gene06185:CDS
TGGTCGGGCGAGGGATTGGG+CGG	0.511129	4.2:+3388412	None:intergenic
GTAATGATGATTTGAATATC+GGG	0.511400	4.2:+3388161	None:intergenic
CGATTAAGATCCGACCCGAT+GGG	0.512765	4.2:+3388351	None:intergenic
GGAGATGGGTGGTCGGGCGA+GGG	0.514417	4.2:+3388403	None:intergenic
ATTTGTGAGGAGAAACTGTT+CGG	0.519896	4.2:+3388280	None:intergenic
GGAAATTGGAGATGGGTGGT+CGG	0.522634	4.2:+3388396	None:intergenic
GTGGTGGCGTTTATTGTCGC+CGG	0.545550	4.2:-3387792	MS.gene06185:CDS
TTTGGGTCCTCTTCAGGCTG+CGG	0.545667	4.2:-3387814	MS.gene06185:CDS
TCCGACGTGGAAATTGGAGA+TGG	0.546314	4.2:+3388388	None:intergenic
TCGTGTGGTCCAAATCTGTA+AGG	0.546455	4.2:+3388095	None:intergenic
GAGGGATGAAGATTTGGCCA+TGG	0.547112	4.2:+3388469	None:intergenic
GAGGAGTTGGGTGAGAGTGA+GGG	0.549562	4.2:+3388451	None:intergenic
GGCCATTGATCATTCATCAA+AGG	0.550701	4.2:+3387635	None:intergenic
GAGATTGGGTTCGTCGTGGA+GGG	0.551352	4.2:+3388253	None:intergenic
GGGCGGAGGTGACAAGTGAT+GGG	0.554215	4.2:+3388429	None:intergenic
TGAGATCGTGGGTGCTGTGT+TGG	0.554657	4.2:-3387754	MS.gene06185:CDS
AGCTGTCGGATTATCCCCAT+CGG	0.556466	4.2:-3388366	MS.gene06185:CDS
GCTAAAGATTGCGGCTATGG+AGG	0.558173	4.2:-3387952	MS.gene06185:CDS
ATGGCGATTGTGGATTGTAA+TGG	0.559387	4.2:-3387885	MS.gene06185:CDS
GATCGTGGGTGCTGTGTTGG+TGG	0.562554	4.2:-3387751	MS.gene06185:CDS
AGCTTTAACCCGTTGGTGCG+TGG	0.562632	4.2:+3388038	None:intergenic
GGAGTCAATGTCGAATTCCC+AGG	0.562922	4.2:-3388329	MS.gene06185:CDS
GGAGATTGGGTTCGTCGTGG+AGG	0.563710	4.2:+3388252	None:intergenic
CGGCGGAGACGGCAAATGAG+TGG	0.568502	4.2:+3388231	None:intergenic
CGGTAAGTATGATGAGATCG+TGG	0.575614	4.2:-3387766	MS.gene06185:CDS
CTTATAGTAATTCACCATCT+GGG	0.578783	4.2:-3387908	MS.gene06185:CDS
AGCCACCGAAGCCAAATCCA+TGG	0.582069	4.2:-3388486	MS.gene06185:CDS
CGTGGATGGAGTGATGAAGA+GGG	0.588357	4.2:+3388303	None:intergenic
CTATCCAATGGCGTTTGCAA+CGG	0.589084	4.2:-3387993	MS.gene06185:CDS
GCCTGAAGAGGACCCAAACT+AGG	0.589128	4.2:+3387819	None:intergenic
CTCATCATACTTACCGCCGC+CGG	0.591519	4.2:+3387773	None:intergenic
CCGACGTGGAAATTGGAGAT+GGG	0.591562	4.2:+3388389	None:intergenic
GAAATTTGGGTCAGATTCGG+AGG	0.592488	4.2:+3388139	None:intergenic
TAGTAATTCACCATCTGGGA+TGG	0.593503	4.2:-3387904	MS.gene06185:CDS
GCCGTCTCCGCCGCTCCCTG+TGG	0.593913	4.2:-3388221	MS.gene06185:CDS
GCGTGGATGGAGTGATGAAG+AGG	0.599358	4.2:+3388302	None:intergenic
GCTGTCGGATTATCCCCATC+GGG	0.602496	4.2:-3388365	MS.gene06185:CDS
GCAGTGGCCACAGGGAGCGG+CGG	0.603868	4.2:+3388214	None:intergenic
AATTGCCGGCAGTGGCCACA+GGG	0.607932	4.2:+3388206	None:intergenic
CGGAGGTGACAAGTGATGGG+AGG	0.610703	4.2:+3388432	None:intergenic
TCCACAATCGCCATCCCAGA+TGG	0.613085	4.2:+3387894	None:intergenic
CGGAGCTATGGTGAAACAAG+AGG	0.615878	4.2:-3387721	MS.gene06185:CDS
GGTAAGTATGATGAGATCGT+GGG	0.617309	4.2:-3387765	MS.gene06185:CDS
GATTAAGATCCGACCCGATG+GGG	0.619338	4.2:+3388352	None:intergenic
GGTGGAGAAAGACGGAGCTA+TGG	0.623714	4.2:-3387733	MS.gene06185:CDS
TCGGATTATCCCCATCGGGT+CGG	0.633245	4.2:-3388361	MS.gene06185:CDS
GTGGCGTTTATTGTCGCCGG+CGG	0.634221	4.2:-3387789	MS.gene06185:CDS
GGAGCTATGGTGAAACAAGA+GGG	0.637476	4.2:-3387720	MS.gene06185:CDS
TCATGAGAAGCTAAAGATTG+CGG	0.637485	4.2:-3387961	MS.gene06185:CDS
TTTGAATATCGGGTGCTCCG+CGG	0.650008	4.2:+3388171	None:intergenic
AGTGGAGATTGGGTTCGTCG+TGG	0.655961	4.2:+3388249	None:intergenic
ACGTGGAAATTGGAGATGGG+TGG	0.657179	4.2:+3388392	None:intergenic
ACAACAGAGAAACTATCCAA+TGG	0.665950	4.2:-3388005	MS.gene06185:CDS
AGGATCTTATGTTGAATCGG+CGG	0.667327	4.2:-3387850	MS.gene06185:CDS
CAATTCTTCCAAGAAATCCG+CGG	0.668096	4.2:-3388188	MS.gene06185:CDS
ATAATCCGACAGCTCCGACG+TGG	0.676269	4.2:+3388375	None:intergenic
CCCATCTCCAATTTCCACGT+CGG	0.677245	4.2:-3388389	MS.gene06185:CDS
GCTGTGTTGGTGGAGAAAGA+CGG	0.682938	4.2:-3387741	MS.gene06185:CDS
TGAGGAGAAACTGTTCGGCG+TGG	0.685610	4.2:+3388285	None:intergenic
CGTGGAGGGAGAGATTTGTG+AGG	0.692173	4.2:+3388267	None:intergenic
GGATGGAGTGATGAAGAGGG+AGG	0.695700	4.2:+3388306	None:intergenic
TGTTGAGGGAGAAGATCGTG+TGG	0.703420	4.2:+3388080	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TGTAATGGAAAAATCTATAA+AGG	-	chr4.2:3388286-3388305	MS.gene06185:CDS	20.0%
!	GGTAATGATGATTTGAATAT+CGG	+	chr4.2:3387999-3388018	None:intergenic	25.0%
!	GTAATGATGATTTGAATATC+GGG	+	chr4.2:3387998-3388017	None:intergenic	25.0%
!	TAAAGGATCTTATGTTGAAT+CGG	-	chr4.2:3388303-3388322	MS.gene06185:CDS	25.0%
	AAAGTCTGCAATTGACATTT+AGG	+	chr4.2:3388493-3388512	None:intergenic	30.0%
	CTTATAGTAATTCACCATCT+GGG	-	chr4.2:3388248-3388267	MS.gene06185:CDS	30.0%
	GATAGTTTCTCTGTTGTTAA+CGG	+	chr4.2:3388148-3388167	None:intergenic	30.0%
!	CATTTTCTTCCTTACAGATT+TGG	-	chr4.2:3388052-3388071	MS.gene06185:CDS	30.0%
	ACAACAGAGAAACTATCCAA+TGG	-	chr4.2:3388151-3388170	MS.gene06185:CDS	35.0%
	AGTGAAATTTGGGTCAGATT+CGG	+	chr4.2:3388023-3388042	None:intergenic	35.0%
	ATTTGTGAGGAGAAACTGTT+CGG	+	chr4.2:3387879-3387898	None:intergenic	35.0%
	CCAGATGGTGAATTACTATA+AGG	+	chr4.2:3388250-3388269	None:intergenic	35.0%
	CCTTATAGTAATTCACCATC+TGG	-	chr4.2:3388247-3388266	MS.gene06185:CDS	35.0%
	GAGACAGAGAAGTGAAATTT+GGG	+	chr4.2:3388033-3388052	None:intergenic	35.0%
	TCATGAGAAGCTAAAGATTG+CGG	-	chr4.2:3388195-3388214	MS.gene06185:CDS	35.0%
	TGAGACAGAGAAGTGAAATT+TGG	+	chr4.2:3388034-3388053	None:intergenic	35.0%
	AGGATCTTATGTTGAATCGG+CGG	-	chr4.2:3388306-3388325	MS.gene06185:CDS	40.0%
	CAATTCTTCCAAGAAATCCG+CGG	-	chr4.2:3387968-3387987	MS.gene06185:CDS	40.0%
	GGATTTCTTGGAAGAATTGC+CGG	+	chr4.2:3387967-3387986	None:intergenic	40.0%
	GGTAAGTATGATGAGATCGT+GGG	-	chr4.2:3388391-3388410	MS.gene06185:CDS	40.0%
	GGTGGCTTCGATAACAAAAA+CGG	+	chr4.2:3387657-3387676	None:intergenic	40.0%
	GTGGCTTCGATAACAAAAAC+GGG	+	chr4.2:3387656-3387675	None:intergenic	40.0%
	TAGTAATTCACCATCTGGGA+TGG	-	chr4.2:3388252-3388271	MS.gene06185:CDS	40.0%
	TGAAGATTTGGCCATGGATT+TGG	+	chr4.2:3387684-3387703	None:intergenic	40.0%
!	ATGGCGATTGTGGATTGTAA+TGG	-	chr4.2:3388271-3388290	MS.gene06185:CDS	40.0%
	ACGGCAAATGAGTGGAGATT+GGG	+	chr4.2:3387920-3387939	None:intergenic	45.0%
	CGGTAAGTATGATGAGATCG+TGG	-	chr4.2:3388390-3388409	MS.gene06185:CDS	45.0%
	CTATCCAATGGCGTTTGCAA+CGG	-	chr4.2:3388163-3388182	MS.gene06185:CDS	45.0%
	GAAATTTGGGTCAGATTCGG+AGG	+	chr4.2:3388020-3388039	None:intergenic	45.0%
	GAAGCTAAAGATTGCGGCTA+TGG	-	chr4.2:3388201-3388220	MS.gene06185:CDS	45.0%
	GAGAGTGAGGGATGAAGATT+TGG	+	chr4.2:3387696-3387715	None:intergenic	45.0%
	GCGGCGTTTAATCCTAGTTT+GGG	-	chr4.2:3388325-3388344	MS.gene06185:CDS	45.0%
	GGAGCTATGGTGAAACAAGA+GGG	-	chr4.2:3388436-3388455	MS.gene06185:CDS	45.0%
	TCGTGTGGTCCAAATCTGTA+AGG	+	chr4.2:3388064-3388083	None:intergenic	45.0%
!	AAAAACAGAGGAGCGTGTTG+AGG	+	chr4.2:3388094-3388113	None:intergenic	45.0%
!	AAAACAGAGGAGCGTGTTGA+GGG	+	chr4.2:3388093-3388112	None:intergenic	45.0%
!	TCAACACGCTCCTCTGTTTT+TGG	-	chr4.2:3388093-3388112	MS.gene06185:CDS	45.0%
!	TTTGGCCATGGATTTGGCTT+CGG	+	chr4.2:3387678-3387697	None:intergenic	45.0%
!!!	TTTTTGGAACCACGCACCAA+CGG	-	chr4.2:3388109-3388128	MS.gene06185:CDS	45.0%
	AATTTCCACGTCGGAGCTGT+CGG	-	chr4.2:3387776-3387795	MS.gene06185:CDS	50.0%
	ACGTGGAAATTGGAGATGGG+TGG	+	chr4.2:3387767-3387786	None:intergenic	50.0%
	AGCTGTCGGATTATCCCCAT+CGG	-	chr4.2:3387790-3387809	MS.gene06185:CDS	50.0%
	ATCACCGTTGCAAACGCCAT+TGG	+	chr4.2:3388170-3388189	None:intergenic	50.0%
	CCATCGGGTCGGATCTTAAT+CGG	-	chr4.2:3387806-3387825	MS.gene06185:CDS	50.0%
	CCCATCTCCAATTTCCACGT+CGG	-	chr4.2:3387767-3387786	MS.gene06185:CDS	50.0%
	CCGACGTGGAAATTGGAGAT+GGG	+	chr4.2:3387770-3387789	None:intergenic	50.0%
	CGATTAAGATCCGACCCGAT+GGG	+	chr4.2:3387808-3387827	None:intergenic	50.0%
	CGGAGCTATGGTGAAACAAG+AGG	-	chr4.2:3388435-3388454	MS.gene06185:CDS	50.0%
	CGTGGATGGAGTGATGAAGA+GGG	+	chr4.2:3387856-3387875	None:intergenic	50.0%
	GAAATTGGAGATGGGTGGTC+GGG	+	chr4.2:3387762-3387781	None:intergenic	50.0%
	GACGGCAAATGAGTGGAGAT+TGG	+	chr4.2:3387921-3387940	None:intergenic	50.0%
	GAGGGATGAAGATTTGGCCA+TGG	+	chr4.2:3387690-3387709	None:intergenic	50.0%
	GATTAAGATCCGACCCGATG+GGG	+	chr4.2:3387807-3387826	None:intergenic	50.0%
	GCTAAAGATTGCGGCTATGG+AGG	-	chr4.2:3388204-3388223	MS.gene06185:CDS	50.0%
	GGAAATTGGAGATGGGTGGT+CGG	+	chr4.2:3387763-3387782	None:intergenic	50.0%
	GGAGTCAATGTCGAATTCCC+AGG	-	chr4.2:3387827-3387846	MS.gene06185:CDS	50.0%
	GGCGGCGTTTAATCCTAGTT+TGG	-	chr4.2:3388324-3388343	MS.gene06185:CDS	50.0%
	GTGCGTGGTTCCAAAAACAG+AGG	+	chr4.2:3388106-3388125	None:intergenic	50.0%
	TCCGACGTGGAAATTGGAGA+TGG	+	chr4.2:3387771-3387790	None:intergenic	50.0%
	TCCTAGTTTGGGTCCTCTTC+AGG	-	chr4.2:3388336-3388355	MS.gene06185:CDS	50.0%
	TGTTGAGGGAGAAGATCGTG+TGG	+	chr4.2:3388079-3388098	None:intergenic	50.0%
	TTTGAATATCGGGTGCTCCG+CGG	+	chr4.2:3387988-3388007	None:intergenic	50.0%
!	CGGAAGAAGCTTTAACCCGT+TGG	+	chr4.2:3388128-3388147	None:intergenic	50.0%
!	GACAAGTGATGGGAGGAGTT+GGG	+	chr4.2:3387720-3387739	None:intergenic	50.0%
!	GCTGTGTTGGTGGAGAAAGA+CGG	-	chr4.2:3388415-3388434	MS.gene06185:CDS	50.0%
!	TGACAAGTGATGGGAGGAGT+TGG	+	chr4.2:3387721-3387740	None:intergenic	50.0%
!!!	TTTTGGAACCACGCACCAAC+GGG	-	chr4.2:3388110-3388129	MS.gene06185:CDS	50.0%
	AGCCACCGAAGCCAAATCCA+TGG	-	chr4.2:3387670-3387689	MS.gene06185:CDS	55.0%
	AGTGATGAAGAGGGAGGCCT+GGG	+	chr4.2:3387847-3387866	None:intergenic	55.0%
	AGTGGAGATTGGGTTCGTCG+TGG	+	chr4.2:3387910-3387929	None:intergenic	55.0%
	ATAATCCGACAGCTCCGACG+TGG	+	chr4.2:3387784-3387803	None:intergenic	55.0%
	CCGATTAAGATCCGACCCGA+TGG	+	chr4.2:3387809-3387828	None:intergenic	55.0%
	CGTGGAGGGAGAGATTTGTG+AGG	+	chr4.2:3387892-3387911	None:intergenic	55.0%
	CTCATCATACTTACCGCCGC+CGG	+	chr4.2:3388386-3388405	None:intergenic	55.0%
	CTTGGAAGAATTGCCGGCAG+TGG	+	chr4.2:3387961-3387980	None:intergenic	55.0%
	GACAGCTCCGACGTGGAAAT+TGG	+	chr4.2:3387777-3387796	None:intergenic	55.0%
	GAGAAACTGTTCGGCGTGGA+TGG	+	chr4.2:3387870-3387889	None:intergenic	55.0%
	GAGATTGGGTTCGTCGTGGA+GGG	+	chr4.2:3387906-3387925	None:intergenic	55.0%
	GAGGAGTTGGGTGAGAGTGA+GGG	+	chr4.2:3387708-3387727	None:intergenic	55.0%
	GCCTGAAGAGGACCCAAACT+AGG	+	chr4.2:3388340-3388359	None:intergenic	55.0%
	GCGTGGATGGAGTGATGAAG+AGG	+	chr4.2:3387857-3387876	None:intergenic	55.0%
	GCTGTCGGATTATCCCCATC+GGG	-	chr4.2:3387791-3387810	MS.gene06185:CDS	55.0%
	GGATGGAGTGATGAAGAGGG+AGG	+	chr4.2:3387853-3387872	None:intergenic	55.0%
	GGTGGAGAAAGACGGAGCTA+TGG	-	chr4.2:3388423-3388442	MS.gene06185:CDS	55.0%
	TCCACAATCGCCATCCCAGA+TGG	+	chr4.2:3388265-3388284	None:intergenic	55.0%
	TCGGATTATCCCCATCGGGT+CGG	-	chr4.2:3387795-3387814	MS.gene06185:CDS	55.0%
	TGAGGAGAAACTGTTCGGCG+TGG	+	chr4.2:3387874-3387893	None:intergenic	55.0%
	TTTGGGTCCTCTTCAGGCTG+CGG	-	chr4.2:3388342-3388361	MS.gene06185:CDS	55.0%
!	ACCATCTGGGATGGCGATTG+TGG	-	chr4.2:3388261-3388280	MS.gene06185:CDS	55.0%
!	AGCTTTAACCCGTTGGTGCG+TGG	+	chr4.2:3388121-3388140	None:intergenic	55.0%
!	GTGGTGGCGTTTATTGTCGC+CGG	-	chr4.2:3388364-3388383	MS.gene06185:CDS	55.0%
!	TGAGATCGTGGGTGCTGTGT+TGG	-	chr4.2:3388402-3388421	MS.gene06185:CDS	55.0%
	AATTGCCGGCAGTGGCCACA+GGG	+	chr4.2:3387953-3387972	None:intergenic	60.0%
	GAGTGATGAAGAGGGAGGCC+TGG	+	chr4.2:3387848-3387867	None:intergenic	60.0%
	GGAGATTGGGTTCGTCGTGG+AGG	+	chr4.2:3387907-3387926	None:intergenic	60.0%
	GGAGGAGTTGGGTGAGAGTG+AGG	+	chr4.2:3387709-3387728	None:intergenic	60.0%
	GGGCGGAGGTGACAAGTGAT+GGG	+	chr4.2:3387730-3387749	None:intergenic	60.0%
	GTGGCGTTTATTGTCGCCGG+CGG	-	chr4.2:3388367-3388386	MS.gene06185:CDS	60.0%
	TGGGCGGAGGTGACAAGTGA+TGG	+	chr4.2:3387731-3387750	None:intergenic	60.0%
!	CGGAGGTGACAAGTGATGGG+AGG	+	chr4.2:3387727-3387746	None:intergenic	60.0%
!	GATCGTGGGTGCTGTGTTGG+TGG	-	chr4.2:3388405-3388424	MS.gene06185:CDS	60.0%
!	GGCCATGGATTTGGCTTCGG+TGG	+	chr4.2:3387675-3387694	None:intergenic	60.0%
	CGGCGGAGACGGCAAATGAG+TGG	+	chr4.2:3387928-3387947	None:intergenic	65.0%
	CGGGTGCTCCGCGGATTTCT+TGG	+	chr4.2:3387979-3387998	None:intergenic	65.0%
	GAATTGCCGGCAGTGGCCAC+AGG	+	chr4.2:3387954-3387973	None:intergenic	65.0%
	GCGTTTATTGTCGCCGGCGG+CGG	-	chr4.2:3388370-3388389	MS.gene06185:CDS	65.0%
	TCCTCTTCAGGCTGCGGTGG+TGG	-	chr4.2:3388348-3388367	MS.gene06185:CDS	65.0%
	GCCACCACCGCAGCCTGAAG+AGG	+	chr4.2:3388352-3388371	None:intergenic	70.0%
	GGAGATGGGTGGTCGGGCGA+GGG	+	chr4.2:3387756-3387775	None:intergenic	70.0%
	GGGTCCTCTTCAGGCTGCGG+TGG	-	chr4.2:3388345-3388364	MS.gene06185:CDS	70.0%
	GGGTGGTCGGGCGAGGGATT+GGG	+	chr4.2:3387750-3387769	None:intergenic	70.0%
	TGGAGATGGGTGGTCGGGCG+AGG	+	chr4.2:3387757-3387776	None:intergenic	70.0%
	TGGGTGGTCGGGCGAGGGAT+TGG	+	chr4.2:3387751-3387770	None:intergenic	70.0%
	TGGTCGGGCGAGGGATTGGG+CGG	+	chr4.2:3387747-3387766	None:intergenic	70.0%
	CCGCTCCCTGTGGCCACTGC+CGG	-	chr4.2:3387945-3387964	MS.gene06185:CDS	75.0%
	CCGGCAGTGGCCACAGGGAG+CGG	+	chr4.2:3387948-3387967	None:intergenic	75.0%
	GCAGTGGCCACAGGGAGCGG+CGG	+	chr4.2:3387945-3387964	None:intergenic	75.0%
	GCCACAGGGAGCGGCGGAGA+CGG	+	chr4.2:3387939-3387958	None:intergenic	75.0%
	TCGGGCGAGGGATTGGGCGG+AGG	+	chr4.2:3387744-3387763	None:intergenic	75.0%
!	GCCGTCTCCGCCGCTCCCTG+TGG	-	chr4.2:3387935-3387954	MS.gene06185:CDS	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	3387644	3388534	3387644	ID=MS.gene06185
chr4.2	mRNA	3387644	3388534	3387644	ID=MS.gene06185.t1;Parent=MS.gene06185
chr4.2	exon	3387644	3388534	3387644	ID=MS.gene06185.t1.exon1;Parent=MS.gene06185.t1
chr4.2	CDS	3387644	3388534	3387644	ID=cds.MS.gene06185.t1;Parent=MS.gene06185.t1

Gene Sequence

>MS.gene06185

ATGGATCGACCCGTTTTTGTTATCGAAGCCACCGAAGCCAAATCCATGGCCAAATCTTCATCCCTCACTCTCACCCAACTCCTCCCATCACTTGTCACCTCCGCCCAATCCCTCGCCCGACCACCCATCTCCAATTTCCACGTCGGAGCTGTCGGATTATCCCCATCGGGTCGGATCTTAATCGGAGTCAATGTCGAATTCCCAGGCCTCCCTCTTCATCACTCCATCCACGCCGAACAGTTTCTCCTCACAAATCTCTCCCTCCACGACGAACCCAATCTCCACTCATTTGCCGTCTCCGCCGCTCCCTGTGGCCACTGCCGGCAATTCTTCCAAGAAATCCGCGGAGCACCCGATATTCAAATCATCATTACCTCCGAATCTGACCCAAATTTCACTTCTCTGTCTCATTTTCTTCCTTACAGATTTGGACCACACGATCTTCTCCCTCAACACGCTCCTCTGTTTTTGGAACCACGCACCAACGGGTTAAAGCTTCTTCCGTTAACAACAGAGAAACTATCCAATGGCGTTTGCAACGGTGATTCGCTTCATGAGAAGCTAAAGATTGCGGCTATGGAGGCTGCGAATAAATCGCATGCTCCTTATAGTAATTCACCATCTGGGATGGCGATTGTGGATTGTAATGGAAAAATCTATAAAGGATCTTATGTTGAATCGGCGGCGTTTAATCCTAGTTTGGGTCCTCTTCAGGCTGCGGTGGTGGCGTTTATTGTCGCCGGCGGCGGTAAGTATGATGAGATCGTGGGTGCTGTGTTGGTGGAGAAAGACGGAGCTATGGTGAAACAAGAGGGCACTGTTAAATTGTTGCTTGAAACTATTTCTCCTAAATGTCAATTGCAGACTTTACTCTGTTCCTTTGATGAATGA

Protein sequence

>MS.gene06185.t1

MDRPVFVIEATEAKSMAKSSSLTLTQLLPSLVTSAQSLARPPISNFHVGAVGLSPSGRILIGVNVEFPGLPLHHSIHAEQFLLTNLSLHDEPNLHSFAVSAAPCGHCRQFFQEIRGAPDIQIIITSESDPNFTSLSHFLPYRFGPHDLLPQHAPLFLEPRTNGLKLLPLTTEKLSNGVCNGDSLHEKLKIAAMEAANKSHAPYSNSPSGMAIVDCNGKIYKGSYVESAAFNPSLGPLQAAVVAFIVAGGGKYDEIVGAVLVEKDGAMVKQEGTVKLLLETISPKCQLQTLLCSFDE