AlfalfaGEDB | MS.gene062010

M. sativa cultivar XinJiangDaYe / MS.gene062010

KEGG: K21198
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF14938.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062010.t1	XP_013463738.1	99	296	3	0	1	296	1	296	1.90E-157	565.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062010.t1	Q9SPE5	72.4	294	77	1	3	296	2	291	4.9e-117	422.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062010.t1	B7FIS3	99.0	296	3	0	1	296	1	296	1.4e-157	565.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene035781	MS.gene062010	PPI
MS.gene064565	MS.gene062010	PPI
MS.gene70948	MS.gene062010	PPI
MS.gene73141	MS.gene062010	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062010.t1	MTR_2g047110	98.986	296	3	1	296	1	296	0.0	597
MS.gene062010.t1	MTR_2g047110	98.929	280	3	17	296	9	288	0.0	566
MS.gene062010.t1	MTR_2g047110	99.142	233	2	64	296	1	233	2.32e-170	471
MS.gene062010.t1	MTR_8g089250	74.662	296	75	1	296	1	296	1.08e-168	469

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062010.t1	AT4G20410	72.449	294	77	1	3	296	2	291	8.01e-159	444
MS.gene062010.t1	AT4G20410	72.954	281	72	1	16	296	21	297	3.91e-151	425

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Find 58 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCGTCTGAGTTGTACA+TGG	0.599261	2.3:-43622247	MS.gene062010:CDS
AACATACAGTTTATCAGCTT+TGG	0.316478	2.3:+43623259	None:intergenic
AATGCACTCACATCGCCTGT+TGG	0.562050	2.3:+43618122	None:intergenic
AATTCTTGAAGACGATGAAA+AGG	0.517181	2.3:-43621304	MS.gene062010:CDS
ACACTATTAGAGGTTAAGTC+AGG	0.550198	2.3:+43618051	None:intergenic
ACTCACTGCGTGGTCAAGAT+GGG	0.521595	2.3:+43618625	None:intergenic
ACTGTTCTTTATGAACAAGC+TGG	0.569775	2.3:-43622905	MS.gene062010:intron
ACTTGCTAGCACAACGATTG+TGG	0.581103	2.3:+43618714	None:intergenic
AGAGCATCAGATGCAGGTTG+TGG	0.531426	2.3:+43622213	None:intergenic
AGCTTTCTCATATGCTATTT+TGG	0.163583	2.3:+43622520	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACGTTTACCCTTCATTA+CGG	+	chr2.3:43618935-43618954	None:intergenic	30.0%
AAATGTACACTGTCTTCTAT+AGG	+	chr2.3:43620140-43620159	None:intergenic	30.0%
AACATACAGTTTATCAGCTT+TGG	+	chr2.3:43618098-43618117	None:intergenic	30.0%
AACGATGATAAACTACTTCT+AGG	+	chr2.3:43621060-43621079	None:intergenic	30.0%
AATTCTTGAAGACGATGAAA+AGG	-	chr2.3:43620050-43620069	MS.gene062010:intron	30.0%
ACTACAAAACTGACAGTTAA+AGG	+	chr2.3:43622168-43622187	None:intergenic	30.0%
AGGGTAAACAATTCAATTAC+CGG	+	chr2.3:43619179-43619198	None:intergenic	30.0%
ATAACCGCCAAAATGTAATT+TGG	+	chr2.3:43618737-43618756	None:intergenic	30.0%
ATAGCCAACTTAAAATAGGA+TGG	-	chr2.3:43620501-43620520	MS.gene062010:intron	30.0%
ATATTCTATTAGAGTGAGAG+AGG	+	chr2.3:43619685-43619704	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	43618064	43623312	43618064	ID=MS.gene062010
chr2.3	mRNA	43618064	43623312	43618064	ID=MS.gene062010.t1;Parent=MS.gene062010
chr2.3	exon	43623266	43623312	43623266	ID=MS.gene062010.t1.exon1;Parent=MS.gene062010.t1
chr2.3	CDS	43623266	43623312	43623266	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43622906	43622973	43622906	ID=MS.gene062010.t1.exon2;Parent=MS.gene062010.t1
chr2.3	CDS	43622906	43622973	43622906	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43622494	43622578	43622494	ID=MS.gene062010.t1.exon3;Parent=MS.gene062010.t1
chr2.3	CDS	43622494	43622578	43622494	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43622198	43622356	43622198	ID=MS.gene062010.t1.exon4;Parent=MS.gene062010.t1
chr2.3	CDS	43622198	43622356	43622198	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43621246	43621383	43621246	ID=MS.gene062010.t1.exon5;Parent=MS.gene062010.t1
chr2.3	CDS	43621246	43621383	43621246	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43619780	43619858	43619780	ID=MS.gene062010.t1.exon6;Parent=MS.gene062010.t1
chr2.3	CDS	43619780	43619858	43619780	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43619300	43619379	43619300	ID=MS.gene062010.t1.exon7;Parent=MS.gene062010.t1
chr2.3	CDS	43619300	43619379	43619300	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43618631	43618760	43618631	ID=MS.gene062010.t1.exon8;Parent=MS.gene062010.t1
chr2.3	CDS	43618631	43618760	43618631	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1
chr2.3	exon	43618064	43618168	43618064	ID=MS.gene062010.t1.exon9;Parent=MS.gene062010.t1
chr2.3	CDS	43618064	43618168	43618064	ID=cds.MS.gene062010.t1;Parent=MS.gene062010.t1

Gene Sequence

>MS.gene062010

ATGTCCTCCTCCGATCCCAACAAGCTGTTAGCCAAAGCTGATAAACTGTATGTTTATACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGTTTTTCAACCTCAGATTCCACCTGCGAATTATACAGTAGTAACATAACAATCTTGATTTTGATCATAGGAAAATTTTTTGATTTTTAGTTTATTAACAACTATTTATTTCGTTGATTTTGTTCTTATCATGAACTAATTCAGGTTTTATTATTTATTCTAAATAGGATTATTGAACTATGGTTAACATGTCCTTTGAATTTTATTGATATAAGATCTTATTACTTGTCTTTCTCTTTTTCAGAACAAAACTCAGTCTCACTAGGTGGAGTGCTGATTGGAAAACTGCTACTGTTCTTTATGAACAAGCTGGTATACAATAATATCATTCTACTATTTCTAATTATTTTATTTCACTGTTACTTGAAGTAATTTATGGTAATCAGTGTTGTCAATTGCGGATTGCGTGCAATAGTGGTTTGTTAAAATTCCGCTACGCTACAATGATGTGGTGCCGCTGTAGCTTCTATTTTACAACATTTTGTACTAAATAGTGTATCGCAGAACAATAACAATTTTATTCAGTTTCTGTTAAAGTTATAGCGGCTATCTGATAACACGGGTGGCAAGTATGTCCAAATTACATTTTGGCGGTTATATTGGTAATACATCTGATGAACTCTTCTTATTCTGGTGTAGCGAATGGGTTTAGAGCTGCCAGGAACCATGAGAAAGCCAAAATAGCATATGAGAAAGCTTCACAAGGACAACAAATGCTTTCTTCGTATCCTTATGTTCTTTGATTTTGATCATATAGTTTCGTTCAGTTTCTTCCGTAATGAAGGGTAAACGTTTTGATGGTTTTCTATGTTGTTATCGGATTCACTTTATTAAACTGTCGTTCCTTGACAAGTTAACCAGACCTTGGGATGCAGCTAAGCACATGGAATCTGCAGCTGCTCTGGCTAAGGAACTGAGCAACTGGAGAGAAGTTGCAGACTTCTATCAAAAGGCGTCTGAGTTGTACATGGAGTGTGGGAGACCACAACCTGCATCTGATGCTCTTGCAAAGGGAGCCCGGTAATTGAATTGTTTACCCTCTTGTTTTGCAGCTGAATTATATGTTGTATTATTTATTAATATTATAATTATTGTGATATGTTGAAGTAGAATAATCAAATAAACATTAGCATATATCAAAATACATAGTGTGAATGCCCTGATAGGATAGCATATGGCAACTCCATCGTAACCAATTTACATATATTCTTTGCAAAAATCAAGCAGGCTAGGATCTTTGTGTAGTATGTAGTTTATTGAGTCCTTTGGGGTATTTGGTACGGTAGCAATGTCACTTGAATTGCTTTCATAGGAGTGATTCGTTGGATTTCATATTGCTTTGGGATAATCTTTGTATATGGCCATTTATCAGCGCGGTGCTCATGAGTGTTTCAAACGGATTTTCATTTCAGATATGATTAGGGATTAAGCAGCATTACTACATTCTTGATCTATTCGAGTTCTCTAATATGTTTCTTTCTCTGTTTTGGATGGTATCTTATCCCAATCATAATTGTGTATTTCCTCTCTCACTCTAATAGAATATCTTACTATAAGCTGAGTGTAAATCTGTCATTTTGTGTAGTCAATGATTACAAAAAAGGAAGTAATAACTTGTGTTGATGTTAAATGATTAGAAATCATACACAAGTCTCATTATAGATTTAATACAGTGATGACCCTTGTATTTTATGCTGCAGATGCTGTATGTTACAAACAATAATCAATGCATATATTGCATCTGGATGTAAAATTGTGTTTTAGTGCCTACTGGGAATGTAATTCTCTTTTGTTATCACCATATGTTTTTCATAGTACCATTCCCTTTATGTAGTGCTTTGGAAGATACCATGCCTGAAGAAGCTATTCAGTTATATACAGATGCTTGTACAATTCTTGAAGACGATGAAAAGGAACAGATGACCTTTGATCTATACCGTGCTGTAACTAGTGTTTATATAAAACTTGAGAAGTAAGTCCTATAGAAGACAGTGTACATTTTATGGTATTTTAGAGTATGAGTATAACCTATCTTTTTCACTATTTTACAACATTGAATATAAATTTTTGTTTGGGCTATATCAAAGTCTCTATATATTCTGTTGGATTTTTTATTTTTTTTTATGTTAACAAGTGTGACACAAAATAAGTCAAATATTGTAGCATAACATGGATATAGTTTAACATTTTCTTAAATGAGTTGTTTCCTGGAATCTACTTTACGAGATTCATAATATTGTGTCCTCGTATAAATTTTGTTTTTTTTTTATTTCATTTTGTCAATTTCATTCCCACAATAAGTGCAGGTTGTATGTGATGTAGTATAGATTGCTTAAGCTATGATAGCCAACTTAAAATAGGATGGAAAGCTATTTAAATTATTCAATGCCATGAAGCTACAATAAGCACTTCGTTGCAAGGGTTCCATTGATTTTCAAGTAATGATATGGTGATAAAGGACCACATTTGTGATTGTTTGGTTACTGCAAATAACACTTCCAAATTTATAATTGGAGGCTTAATGAGTTTCATGCAGATGCAAGAAACAACTTAAGTTTTATCTAGAAGAGTTATGTTGATGTGATGGCCAATATCTAATCTAAAAAATTCACCAAATACCGGCGTAGGAGAAAAACAGGACGACTAGTAGTATTTGATTTAACTACACCAGCCACCTCTGACACCAAAGGTAGCATTTGATTAATAGGTTAGAGCAGATGAAACACGTGTTCGGTTCTACATTTGGTTTTATTTAAAAATTCAAAGGAATGGAACATAAGGCTAAAGAAGTTGTATATTTTAGTTCCACTAAAAGGGTAGAACCAAAGAGAATGAAATTAAACAGTTTGTTCCGTTCTATTCATATGCCAAATGCTACCTAAGAACTGAATAGTTGGACCTAGAAGTAGTTTATCATCGTTATCTTATGTCAAAACTTGACCACCACACTTTTATCTTACTCCTCAAAACCTATGTTTATACTATCCTTATGCGTCTTGTGGCATCTTTGAATTCTGGGTCCTCCTTGGACCAGATTTTGTTGACTAGTTTTACTGGTTTTGGTTGAAGTAAAGAAGCCAAATTTTGTCGCAATGTGGCATTTATGCAACACAACGGCTGAGCATGACTCATGCTCCTTTTAAAGAGATTTCTTCTCTTAACTAGTAGTGTCACTAGGAGGACAAAGAATTTGGCTTTTACTTGTTGTAAAGCTAATATTTTAGAGGGGTTTCCCTTAATTATTGTTATCTGCATAATGTAAAATCAAGTTGTTTTCGTAAGTGTAAATTGGTATGTAAACATTTCATCTATTGTATGTTGACTTACATATATTTCCTTGGGCATGGTTTGATGCACAGATATACAGATGCTGCATCATCCCTGTTGAGATTGGGCTTGGCGGCTGACAAATGTAATGCTACCAATAGTCAGTCCAAGGTTTGGAATATTATAACTTTGTTTTCTTTATTTTAACTTTTAAGTCAATCCCTTTGCTAAATACTCTGAAAGGGATAAAACAGGGAGCAAAGACTGTGATATCTCTATATTTAGCGTGCTAACTAGGAGTATTTTATTTATTATGTTTTTTAATTGTATGGTTAACTACATTCGAAATTTCTATCCAGCCAAACATGTGAATACAACTAGAATCCATATTGTTTATACTAGTTTATATGCATGTTCGTTGTGTTTAACCTCTCCAACATGGTCCTTTCACAAATTGAATCCAAGGCTAAAGTTTCTGTTACATAGTCTTTTAGCATTGTGTTCATTTGCTGAAGTGTACTATTATTATTTTTTCATAAACTTTCTCTCACACTCCTTGTCATGAATGCAGGCTTATCTTAGTGCAATTATTGTCTACCTTTATGCTGATGATTTTAAGCAAGCAGAGAAATGCTATAATGACTGCTCTCAGTAAGTTTTTACCTCCTTGTTATGCTGTTCTGTACTATAAATCCAACCAACATCAACGTGTGATCTATTGATCTTTATGCTCTATTTTCCTTTAACTGTCAGTTTTGTAGTAAAAAACTCAAGTTCAATGCAACATTAACTTCTTTTTTTGTCAATTATGCCCTTACCTGTGCATTGAACTGAAATCATTTTTATCATTGTTGTTGTCGCCGTTGAACTTTTACACCGGGTTTGCTTCTTTGTTTTCGAACTCCGATTTCTTCTTGCCCTGACAAAATAGCATTCATAGGATGAATACTATGAATAAAATTTTTGTAGGTCTGATTTGTAATCGAAAAATTCTGATCATACATTCTGGGTCCAAATTAACCAGAGTTTCTTTGGGACAAGCATACATTTGGTTGCAACAACTTAACATACTGCGTGCCGATTTTAAGATTTACTATTTACTCTGTAATTTACTAATTTATCATATGCTTTATCGAATTTGTTAATTGAACTGATGAATAAATGGATATAAATGCTTGTGGTGTCTGTAGGATTGATGCTTTTCTTAAAAGTGACCACAATCGTTGTGCTAGCAAGTTTCTTTCTGCTTATACGGATGGAGACGTCGACGAAATCAAAAAAATTGCTCAGTCTAGCGCTGTTTCCCATCTTGACCACGCAGTGAGTGATTTAGCTTATATGTTGTTTTTCTTTTGGACCGCAAAAATATAGATAATGAATACACTCTAGCTATAGAAACTTCTCGGCTGCTTGTCACCAATATCAGGTCTTCCACTTTTTGAGTGCAAGAATCAAATAGATTTGTTATTTAATCCAAATTTTTTTACCTTGCGGTCTTTACTGTTTCAAGGGTTAGGTTCTAAATGATTTGTTCATCACATTGCCTTATAATTCAGCTTGCCTTAAAATCTTTTATATCCAATCAAAGTATAATTTTTATTAACGGAGCCAAACAAATCCTGTGCTCACTCGTGAAATACCTTGTTATTACCGGATAGTGACCAGCAATGCATGTCAAATTTCATACAGCATACACAATCTTCAATCAATAATTACTGATATTTTTTCTGTCAATCACGGGGTTATATATATGGACTCAACTTTGGAATAAATTACCTGCAGATAATTAGGCTTGCGAGGAAACTTCCAACAGGCGATGTGAGTGCATTAAAGACTGGTACTGCCGAAGATGATGAAGATTCACTGGACGAAAATGACCTGACTTAA

Protein sequence

>MS.gene062010.t1

MSSSDPNKLLAKADKLTKLSLTRWSADWKTATVLYEQAANGFRAARNHEKAKIAYEKASQGQQMLSSPWDAAKHMESAAALAKELSNWREVADFYQKASELYMECGRPQPASDALAKGARALEDTMPEEAIQLYTDACTILEDDEKEQMTFDLYRAVTSVYIKLEKYTDAASSLLRLGLAADKCNATNSQSKAYLSAIIVYLYADDFKQAEKCYNDCSQIDAFLKSDHNRCASKFLSAYTDGDVDEIKKIAQSSAVSHLDHAIIRLARKLPTGDVSALKTGTAEDDEDSLDENDLT