Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062179.t1 | XP_013468854.1 | 87.6 | 484 | 58 | 2 | 1 | 482 | 1 | 484 | 9.00E-229 | 802.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062179.t1 | O23086 | 48.4 | 477 | 211 | 7 | 11 | 453 | 8 | 483 | 1.2e-117 | 424.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062179.t1 | A0A072VMR8 | 87.6 | 484 | 58 | 2 | 1 | 482 | 1 | 484 | 6.5e-229 | 802.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062179 | MS.gene61659 | PPI |
| MS.gene062179 | MS.gene96117 | PPI |
| MS.gene062179 | MS.gene66665 | PPI |
| MS.gene062179 | MS.gene044738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062179.t1 | MTR_1g077670 | 94.628 | 484 | 24 | 2 | 1 | 482 | 1 | 484 | 0.0 | 944 |
| MS.gene062179.t1 | MTR_1g077660 | 80.842 | 475 | 84 | 4 | 10 | 482 | 4 | 473 | 0.0 | 779 |
| MS.gene062179.t1 | MTR_7g106260 | 45.747 | 435 | 214 | 3 | 52 | 479 | 42 | 461 | 4.01e-120 | 360 |
| MS.gene062179.t1 | MTR_2g087288 | 42.754 | 414 | 215 | 3 | 52 | 460 | 37 | 433 | 5.30e-116 | 349 |
| MS.gene062179.t1 | MTR_4g051575 | 44.198 | 405 | 195 | 3 | 52 | 447 | 41 | 423 | 2.04e-114 | 345 |
| MS.gene062179.t1 | MTR_1g115140 | 39.894 | 376 | 211 | 4 | 48 | 408 | 37 | 412 | 2.43e-94 | 296 |
| MS.gene062179.t1 | MTR_2g087285 | 40.047 | 422 | 221 | 6 | 41 | 447 | 15 | 419 | 3.59e-93 | 290 |
| MS.gene062179.t1 | MTR_1g115175 | 42.241 | 348 | 190 | 5 | 48 | 388 | 33 | 376 | 7.07e-91 | 286 |
| MS.gene062179.t1 | MTR_4g098570 | 34.949 | 495 | 256 | 11 | 44 | 473 | 41 | 534 | 1.33e-87 | 278 |
| MS.gene062179.t1 | MTR_1g115190 | 40.960 | 354 | 200 | 5 | 42 | 388 | 27 | 378 | 2.91e-84 | 270 |
| MS.gene062179.t1 | MTR_5g014310 | 39.833 | 359 | 204 | 3 | 48 | 394 | 53 | 411 | 1.01e-83 | 268 |
| MS.gene062179.t1 | MTR_4g098610 | 34.792 | 480 | 248 | 8 | 44 | 458 | 41 | 520 | 8.53e-80 | 258 |
| MS.gene062179.t1 | MTR_7g094770 | 36.160 | 401 | 230 | 6 | 56 | 449 | 60 | 441 | 2.78e-79 | 254 |
| MS.gene062179.t1 | MTR_8g104110 | 36.240 | 367 | 212 | 8 | 42 | 389 | 50 | 413 | 1.54e-69 | 232 |
| MS.gene062179.t1 | MTR_4g051575 | 40.260 | 308 | 152 | 4 | 150 | 447 | 4 | 289 | 6.38e-69 | 223 |
| MS.gene062179.t1 | MTR_6g084680 | 35.433 | 381 | 229 | 6 | 19 | 384 | 48 | 426 | 8.96e-68 | 228 |
| MS.gene062179.t1 | MTR_8g104130 | 37.092 | 337 | 206 | 6 | 49 | 383 | 56 | 388 | 6.03e-65 | 219 |
| MS.gene062179.t1 | MTR_1g111250 | 28.195 | 493 | 276 | 8 | 36 | 453 | 58 | 547 | 1.03e-63 | 216 |
| MS.gene062179.t1 | MTR_8g104120 | 34.831 | 356 | 214 | 7 | 48 | 389 | 56 | 407 | 1.02e-60 | 209 |
| MS.gene062179.t1 | MTR_0710s0020 | 49.045 | 157 | 79 | 1 | 42 | 197 | 27 | 183 | 5.18e-41 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062179.t1 | AT4G00910 | 49.263 | 475 | 215 | 7 | 1 | 453 | 1 | 471 | 1.54e-160 | 464 |
| MS.gene062179.t1 | AT1G08440 | 44.010 | 409 | 209 | 3 | 42 | 445 | 3 | 396 | 5.21e-117 | 353 |
| MS.gene062179.t1 | AT1G08430 | 41.203 | 449 | 238 | 5 | 42 | 479 | 3 | 436 | 1.71e-114 | 346 |
| MS.gene062179.t1 | AT2G27240 | 41.928 | 415 | 221 | 4 | 42 | 451 | 3 | 402 | 4.99e-113 | 342 |
| MS.gene062179.t1 | AT3G11680 | 45.652 | 414 | 192 | 5 | 45 | 448 | 31 | 421 | 8.22e-110 | 334 |
| MS.gene062179.t1 | AT3G11680 | 45.215 | 418 | 196 | 5 | 45 | 452 | 29 | 423 | 1.01e-109 | 334 |
| MS.gene062179.t1 | AT2G27240 | 39.456 | 441 | 221 | 4 | 42 | 451 | 3 | 428 | 2.27e-109 | 333 |
| MS.gene062179.t1 | AT4G17970 | 38.798 | 366 | 215 | 3 | 42 | 399 | 29 | 393 | 2.61e-90 | 286 |
| MS.gene062179.t1 | AT5G46600 | 37.845 | 399 | 225 | 5 | 10 | 394 | 8 | 397 | 2.06e-89 | 283 |
| MS.gene062179.t1 | AT5G46610 | 37.245 | 392 | 230 | 3 | 36 | 416 | 25 | 411 | 1.23e-84 | 271 |
| MS.gene062179.t1 | AT5G46610 | 34.439 | 392 | 217 | 4 | 36 | 416 | 25 | 387 | 2.57e-72 | 238 |
| MS.gene062179.t1 | AT3G18440 | 35.917 | 387 | 221 | 10 | 24 | 389 | 46 | 426 | 2.54e-70 | 234 |
| MS.gene062179.t1 | AT1G18420 | 34.439 | 392 | 235 | 7 | 30 | 404 | 58 | 444 | 3.73e-69 | 231 |
| MS.gene062179.t1 | AT1G18420 | 34.426 | 366 | 221 | 6 | 53 | 404 | 1 | 361 | 7.66e-66 | 220 |
| MS.gene062179.t1 | AT5G46610 | 33.163 | 392 | 199 | 5 | 36 | 416 | 25 | 364 | 1.77e-63 | 214 |
| MS.gene062179.t1 | AT1G68600 | 35.493 | 355 | 213 | 7 | 49 | 390 | 45 | 396 | 9.36e-62 | 211 |
| MS.gene062179.t1 | AT2G17470 | 33.903 | 351 | 216 | 7 | 52 | 390 | 31 | 377 | 9.99e-60 | 205 |
| MS.gene062179.t1 | AT2G17470 | 33.903 | 351 | 216 | 7 | 52 | 390 | 53 | 399 | 1.96e-59 | 205 |
| MS.gene062179.t1 | AT1G25480 | 35.311 | 354 | 213 | 7 | 49 | 390 | 56 | 405 | 2.07e-59 | 204 |
| MS.gene062179.t1 | AT4G17585 | 51.316 | 76 | 34 | 2 | 42 | 114 | 29 | 104 | 5.71e-16 | 75.5 |
Find 90 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATCAAAACGAGCCTTTA+TGG | 0.138720 | 1.1:-58211527 | None:intergenic |
| ACTTGAATTACTTCCATTAT+TGG | 0.173527 | 1.1:-58212753 | None:intergenic |
| TTCAGCTTGGTTTCAATATC+TGG | 0.213828 | 1.1:+58211574 | MS.gene062179:CDS |
| GAGTAGGATTCCAACAATTA+TGG | 0.214124 | 1.1:-58211357 | None:intergenic |
| AAAATTCATCCATTGTTTAA+AGG | 0.225366 | 1.1:+58210609 | MS.gene062179:CDS |
| AGGATTTCTACTATTATAAT+TGG | 0.227233 | 1.1:+58211634 | MS.gene062179:CDS |
| GGCAAGTTTGTCGAGGTTTC+CGG | 0.250712 | 1.1:-58211731 | None:intergenic |
| GTCAAATAAACTTGATAGTT+TGG | 0.252810 | 1.1:+58212617 | MS.gene062179:CDS |
| CGACAAACTTGCCAACTCTT+TGG | 0.277455 | 1.1:+58211741 | MS.gene062179:CDS |
| TGGAAGCAATACCTTAAAAT+TGG | 0.285842 | 1.1:+58212259 | MS.gene062179:CDS |
| GCATGATTATTCGACCTGTT+TGG | 0.287777 | 1.1:+58211680 | MS.gene062179:CDS |
| TCCTGTATTGATGCTCTTGT+TGG | 0.297080 | 1.1:+58212304 | MS.gene062179:CDS |
| AATTGATGAATTGTTTGATA+TGG | 0.306438 | 1.1:+58211603 | MS.gene062179:CDS |
| CTTGAATTACTTCCATTATT+GGG | 0.307049 | 1.1:-58212752 | None:intergenic |
| CATGATTATTCGACCTGTTT+GGG | 0.318706 | 1.1:+58211681 | MS.gene062179:CDS |
| CATTGATACTTCTGTTGCTT+TGG | 0.318862 | 1.1:-58212081 | None:intergenic |
| TCCTAATTATTCAAACAATC+TGG | 0.338602 | 1.1:-58212962 | None:intergenic |
| GTTGCTTCCTCATGCTGGTC+TGG | 0.347155 | 1.1:-58212927 | None:intergenic |
| AGTAGGATTCCAACAATTAT+GGG | 0.359554 | 1.1:-58211356 | None:intergenic |
| TTCTAGCCCTTGGTGTACAT+TGG | 0.365701 | 1.1:+58211303 | MS.gene062179:CDS |
| TCTAGCCCTTGGTGTACATT+GGG | 0.373912 | 1.1:+58211304 | MS.gene062179:CDS |
| TTGAAACCAAGCTGAAAGTT+AGG | 0.380911 | 1.1:-58211567 | None:intergenic |
| ATATGTGGAACTACCCTTGC+TGG | 0.400330 | 1.1:+58211278 | MS.gene062179:CDS |
| CTTGCTGGCCTTCTAGCCCT+TGG | 0.415895 | 1.1:+58211293 | MS.gene062179:CDS |
| TGATTGTTGCTTCCTCATGC+TGG | 0.420856 | 1.1:-58212932 | None:intergenic |
| CAATTGGAACCCATAATTGT+TGG | 0.429690 | 1.1:+58211347 | MS.gene062179:CDS |
| CAAAACGAGCCTTTATGGTT+GGG | 0.430411 | 1.1:-58211522 | None:intergenic |
| TACTTGAATCCTTTGTATGA+TGG | 0.432772 | 1.1:+58210667 | MS.gene062179:CDS |
| AAGATTCATCCCAACCATAA+AGG | 0.436098 | 1.1:+58211513 | MS.gene062179:CDS |
| GAACTAACCTTCCAAAGAGT+TGG | 0.438285 | 1.1:-58211752 | None:intergenic |
| TTCAGGCTAATTTAGCAAGA+TGG | 0.439855 | 1.1:+58212200 | MS.gene062179:intron |
| TTGAAGAAAGCTTGGGAGGT+GGG | 0.442474 | 1.1:+58210571 | MS.gene062179:CDS |
| TCAGGCTAATTTAGCAAGAT+GGG | 0.465820 | 1.1:+58212201 | MS.gene062179:intron |
| GGAATCCTACTCTTTCTACT+AGG | 0.476526 | 1.1:+58211368 | MS.gene062179:CDS |
| GAGCGGTAAAAGAAGTAGAA+TGG | 0.483895 | 1.1:+58210452 | MS.gene062179:CDS |
| TCAAAACGAGCCTTTATGGT+TGG | 0.485348 | 1.1:-58211523 | None:intergenic |
| AAAAGTGTAAATAGAATATG+TGG | 0.488093 | 1.1:+58211263 | MS.gene062179:CDS |
| CATTGGGTTGCTAGTAAAGC+AGG | 0.488274 | 1.1:+58211320 | MS.gene062179:CDS |
| AGTTCTAGACCAGCCCAAAC+AGG | 0.489088 | 1.1:-58211694 | None:intergenic |
| TTTGAAGAAAGCTTGGGAGG+TGG | 0.490681 | 1.1:+58210570 | MS.gene062179:CDS |
| TCTTAAGACACTTGCAGAGT+TGG | 0.491371 | 1.1:-58212562 | None:intergenic |
| AGAAGTAGAATGGAGTATCA+AGG | 0.500383 | 1.1:+58210462 | MS.gene062179:CDS |
| GAAATTCTAGCTCTCTTCCA+TGG | 0.507101 | 1.1:-58210496 | None:intergenic |
| CAAAGCAACAGAAGTATCAA+TGG | 0.508008 | 1.1:+58212082 | MS.gene062179:CDS |
| AATCTTCTTGATTTCATCTG+AGG | 0.508625 | 1.1:-58212511 | None:intergenic |
| TCCAACAAGAGCATCAATAC+AGG | 0.510116 | 1.1:-58212305 | None:intergenic |
| ATTATTCGACCTGTTTGGGC+TGG | 0.512091 | 1.1:+58211685 | MS.gene062179:CDS |
| TTGTTTAGATTTGTCACACT+TGG | 0.515185 | 1.1:-58212880 | None:intergenic |
| AAAGGTAGGAATAGCACTTA+CGG | 0.517885 | 1.1:+58210627 | MS.gene062179:CDS |
| AAACTTGCCAACTCTTTGGA+AGG | 0.525053 | 1.1:+58211745 | MS.gene062179:CDS |
| AATGTACACCAAGGGCTAGA+AGG | 0.525348 | 1.1:-58211301 | None:intergenic |
| AATCCTTTGTATGATGGAGT+TGG | 0.525534 | 1.1:+58210673 | MS.gene062179:CDS |
| AAATTGAAGCGACCGTGGGC+AGG | 0.526155 | 1.1:-58212226 | None:intergenic |
| TTCATCCATTGTTTAAAGGT+AGG | 0.527615 | 1.1:+58210613 | MS.gene062179:CDS |
| TAGTAAAGCAGGAAAGCAAT+TGG | 0.530375 | 1.1:+58211331 | MS.gene062179:CDS |
| GAGCACAACATCAATGAAAG+TGG | 0.530404 | 1.1:+58212536 | MS.gene062179:CDS |
| ATTTATCCTAACTTTCAGCT+TGG | 0.537358 | 1.1:+58211561 | MS.gene062179:CDS |
| CAAGGGCTAGAAGGCCAGCA+AGG | 0.548456 | 1.1:-58211292 | None:intergenic |
| GTAGTCTTTGAGTACACTGC+TGG | 0.551580 | 1.1:+58210730 | MS.gene062179:CDS |
| TGGAGTATCAAGGTAGAAGA+TGG | 0.555329 | 1.1:+58210472 | MS.gene062179:CDS |
| CTATTCCTACCTTTAAACAA+TGG | 0.566154 | 1.1:-58210618 | None:intergenic |
| CTTCCAACTCCATCATACAA+AGG | 0.572397 | 1.1:-58210676 | None:intergenic |
| AAGGGCTAGAAGGCCAGCAA+GGG | 0.574471 | 1.1:-58211291 | None:intergenic |
| TCAAGGTAGAAGATGGTCCA+TGG | 0.576705 | 1.1:+58210479 | MS.gene062179:CDS |
| GACGAAAATTGAAGCGACCG+TGG | 0.583474 | 1.1:-58212231 | None:intergenic |
| AATGCAAAAGAAACATCCCT+TGG | 0.591201 | 1.1:+58212711 | MS.gene062179:CDS |
| GGAAGTAATTCAAGTGGTCA+CGG | 0.591717 | 1.1:+58212761 | MS.gene062179:CDS |
| TGAAGCTCAATCAGCAAGTG+AGG | 0.592589 | 1.1:+58212016 | MS.gene062179:CDS |
| CAAATGTGATTTAGGTTGTG+TGG | 0.592721 | 1.1:+58211983 | MS.gene062179:intron |
| GCAAGATGGGAGCCTGCCCA+CGG | 0.596456 | 1.1:+58212214 | MS.gene062179:CDS |
| TACTGAAACTGTAGCTCGTG+TGG | 0.597026 | 1.1:+58212797 | MS.gene062179:CDS |
| AAATATGGCTCATGATGACA+AGG | 0.597714 | 1.1:+58210429 | None:intergenic |
| GGCTCATGATGACAAGGGAG+CGG | 0.607807 | 1.1:+58210435 | MS.gene062179:CDS |
| AAGAGTTGGCAAGTTTGTCG+AGG | 0.616195 | 1.1:-58211738 | None:intergenic |
| TGTTTGATATGGCACGACAA+AGG | 0.616649 | 1.1:+58211614 | MS.gene062179:CDS |
| ATGTATAAATTCAGAAAACA+AGG | 0.617477 | 1.1:+58212327 | MS.gene062179:CDS |
| AGCACAACATCAATGAAAGT+GGG | 0.618681 | 1.1:+58212537 | MS.gene062179:CDS |
| ACGAAAATTGAAGCGACCGT+GGG | 0.621590 | 1.1:-58212230 | None:intergenic |
| AGCAACCCAATGTACACCAA+GGG | 0.632304 | 1.1:-58211309 | None:intergenic |
| AATAATGGAAGTAATTCAAG+TGG | 0.632468 | 1.1:+58212755 | MS.gene062179:CDS |
| GGAAGCACATCTACGCATTG+TGG | 0.638545 | 1.1:-58212284 | None:intergenic |
| GTACTCAAAGACTACTACCA+CGG | 0.644472 | 1.1:-58210722 | None:intergenic |
| AGCATGTGTGCATTTGTCGT+AGG | 0.652167 | 1.1:+58210523 | MS.gene062179:CDS |
| TTATACCTAGTAGAAAGAGT+AGG | 0.666106 | 1.1:-58211373 | None:intergenic |
| GAGTTGGAAGAAATGCTATG+TGG | 0.671160 | 1.1:+58210689 | MS.gene062179:CDS |
| AGTTGGAAGAAATGCTATGT+GGG | 0.673533 | 1.1:+58210690 | MS.gene062179:CDS |
| GATCTTGCCAGACCAGCATG+AGG | 0.682092 | 1.1:+58212920 | MS.gene062179:CDS |
| TAGCAACCCAATGTACACCA+AGG | 0.686108 | 1.1:-58211310 | None:intergenic |
| AATATGGCTCATGATGACAA+GGG | 0.722069 | 1.1:+58210430 | None:intergenic |
| TATGTGGGCAGTCATGACCG+TGG | 0.821986 | 1.1:+58210705 | MS.gene062179:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTATTAATTTAATTTA+TGG | + | chr1.1:58211052-58211071 | MS.gene062179:intron | 0.0% |
| !! | TTAATTTATGGATAAAATTA+TGG | + | chr1.1:58211064-58211083 | MS.gene062179:intron | 10.0% |
| !!! | ACATTATTTATTTTTATAGA+AGG | + | chr1.1:58211927-58211946 | MS.gene062179:intron | 10.0% |
| !!! | TTAATTTTAAGCATATAATT+TGG | - | chr1.1:58211136-58211155 | None:intergenic | 10.0% |
| !! | AAAAAGTTAAATTAATGACA+AGG | + | chr1.1:58210795-58210814 | MS.gene062179:intron | 15.0% |
| !! | AAAATAATTAAATGTACCTT+AGG | - | chr1.1:58212484-58212503 | None:intergenic | 15.0% |
| !! | AAATAATTAAATGTACCTTA+GGG | - | chr1.1:58212483-58212502 | None:intergenic | 15.0% |
| !! | TAGTATAATGAAATTATAGA+TGG | - | chr1.1:58210833-58210852 | None:intergenic | 15.0% |
| !! | TTAAAGACTAAGTATATTAT+GGG | + | chr1.1:58211860-58211879 | MS.gene062179:intron | 15.0% |
| !! | TTTAAAGACTAAGTATATTA+TGG | + | chr1.1:58211859-58211878 | MS.gene062179:intron | 15.0% |
| !!! | AAATATCATTGATTAATTTC+AGG | + | chr1.1:58212183-58212202 | MS.gene062179:intron | 15.0% |
| !!! | AGGTTTTTTTTTTTTTTTTG+AGG | + | chr1.1:58210985-58211004 | MS.gene062179:intron | 15.0% |
| !! | AAAATTCATCCATTGTTTAA+AGG | + | chr1.1:58210609-58210628 | MS.gene062179:CDS | 20.0% |
| !! | AATTGATGAATTGTTTGATA+TGG | + | chr1.1:58211603-58211622 | MS.gene062179:CDS | 20.0% |
| !! | AATTTCATTATACTATAACC+AGG | + | chr1.1:58210838-58210857 | MS.gene062179:intron | 20.0% |
| !! | AGGATTTCTACTATTATAAT+TGG | + | chr1.1:58211634-58211653 | MS.gene062179:CDS | 20.0% |
| !! | ATACAACATTTCTGATATAT+AGG | + | chr1.1:58211212-58211231 | MS.gene062179:intron | 20.0% |
| !! | ATGTATAAATTCAGAAAACA+AGG | + | chr1.1:58212327-58212346 | MS.gene062179:CDS | 20.0% |
| !! | ATTATGTACAAATGTGATTT+AGG | + | chr1.1:58211975-58211994 | MS.gene062179:intron | 20.0% |
| !! | GCAATTATACAAAATAACTT+TGG | + | chr1.1:58212364-58212383 | MS.gene062179:intron | 20.0% |
| !! | TAAAGACTAAGTATATTATG+GGG | + | chr1.1:58211861-58211880 | MS.gene062179:intron | 20.0% |
| !! | TATATATCAGAAATGTTGTA+TGG | - | chr1.1:58211213-58211232 | None:intergenic | 20.0% |
| !!! | AAAAGTGTAAATAGAATATG+TGG | + | chr1.1:58211263-58211282 | MS.gene062179:CDS | 20.0% |
| !!! | AAGTTATTTTGTATAATTGC+TGG | - | chr1.1:58212364-58212383 | None:intergenic | 20.0% |
| !!! | TGTAATTGTATTGTTATTGT+TGG | - | chr1.1:58211408-58211427 | None:intergenic | 20.0% |
| ! | AAAAATGGAAATCCCAATAA+TGG | + | chr1.1:58212740-58212759 | MS.gene062179:CDS | 25.0% |
| ! | AATAACGTGTCTATCTATTA+AGG | - | chr1.1:58211838-58211857 | None:intergenic | 25.0% |
| ! | ACAATATATAGTACACACTA+TGG | + | chr1.1:58211425-58211444 | MS.gene062179:intron | 25.0% |
| ! | ACACTCAAAAAATTCATATG+AGG | - | chr1.1:58212155-58212174 | None:intergenic | 25.0% |
| ! | ACTTGAATTACTTCCATTAT+TGG | - | chr1.1:58212756-58212775 | None:intergenic | 25.0% |
| ! | ATAACGTGTCTATCTATTAA+GGG | - | chr1.1:58211837-58211856 | None:intergenic | 25.0% |
| ! | CTTGAATTACTTCCATTATT+GGG | - | chr1.1:58212755-58212774 | None:intergenic | 25.0% |
| ! | GTTAATCACATGCAAATTTA+TGG | - | chr1.1:58211159-58211178 | None:intergenic | 25.0% |
| ! | GTTAATCAGGTTAAAAAATG+TGG | + | chr1.1:58211015-58211034 | MS.gene062179:intron | 25.0% |
| ! | TTGAATTTATTAGAAACCCT+AGG | - | chr1.1:58212121-58212140 | None:intergenic | 25.0% |
| !! | AAACAATGGATGAATTTTCT+TGG | - | chr1.1:58210607-58210626 | None:intergenic | 25.0% |
| !! | AATAATGGAAGTAATTCAAG+TGG | + | chr1.1:58212755-58212774 | MS.gene062179:CDS | 25.0% |
| !! | GTCAAATAAACTTGATAGTT+TGG | + | chr1.1:58212617-58212636 | MS.gene062179:CDS | 25.0% |
| !!! | CAAATTTTTGAAGAAAGCTT+GGG | + | chr1.1:58210564-58210583 | MS.gene062179:CDS | 25.0% |
| AATCTTCTTGATTTCATCTG+AGG | - | chr1.1:58212514-58212533 | None:intergenic | 30.0% | |
| ACAGTAAGATAATAACCCTA+AGG | + | chr1.1:58212465-58212484 | MS.gene062179:intron | 30.0% | |
| AGTAGGATTCCAACAATTAT+GGG | - | chr1.1:58211359-58211378 | None:intergenic | 30.0% | |
| ATAATCAAAACGAGCCTTTA+TGG | - | chr1.1:58211530-58211549 | None:intergenic | 30.0% | |
| ATGGTGTAGACTTATCTTAA+GGG | + | chr1.1:58211779-58211798 | MS.gene062179:intron | 30.0% | |
| ATTTATCCTAACTTTCAGCT+TGG | + | chr1.1:58211561-58211580 | MS.gene062179:CDS | 30.0% | |
| CTATTCCTACCTTTAAACAA+TGG | - | chr1.1:58210621-58210640 | None:intergenic | 30.0% | |
| GGAGTCTAACAAAAAATTGA+TGG | + | chr1.1:58212037-58212056 | MS.gene062179:CDS | 30.0% | |
| TAACTTTGGATAGTGATATG+AGG | + | chr1.1:58212378-58212397 | MS.gene062179:intron | 30.0% | |
| TACTTGAATCCTTTGTATGA+TGG | + | chr1.1:58210667-58210686 | MS.gene062179:CDS | 30.0% | |
| TATATAGGCTATCAAATTGC+AGG | + | chr1.1:58211227-58211246 | MS.gene062179:intron | 30.0% | |
| TGGAAGCAATACCTTAAAAT+TGG | + | chr1.1:58212259-58212278 | MS.gene062179:CDS | 30.0% | |
| TGTCACAAACATAGAAAAAG+TGG | - | chr1.1:58210954-58210973 | None:intergenic | 30.0% | |
| TTATACCTAGTAGAAAGAGT+AGG | - | chr1.1:58211376-58211395 | None:intergenic | 30.0% | |
| TTCATCCATTGTTTAAAGGT+AGG | + | chr1.1:58210613-58210632 | MS.gene062179:CDS | 30.0% | |
| TTGAGGAAATCTAGTTAATC+AGG | + | chr1.1:58211002-58211021 | MS.gene062179:intron | 30.0% | |
| TTGTTTAGATTTGTCACACT+TGG | - | chr1.1:58212883-58212902 | None:intergenic | 30.0% | |
| TTTGTGACATCTAGTTAATC+AGG | + | chr1.1:58210965-58210984 | MS.gene062179:intron | 30.0% | |
| !! | ATTTTGATGTCTATAACTCC+TGG | - | chr1.1:58210859-58210878 | None:intergenic | 30.0% |
| !! | GCAAATTTTTGAAGAAAGCT+TGG | + | chr1.1:58210563-58210582 | MS.gene062179:CDS | 30.0% |
| !!! | ATAAAGGCTCGTTTTGATTA+TGG | + | chr1.1:58211529-58211548 | MS.gene062179:CDS | 30.0% |
| !!! | ATTTTAAGGTATTGCTTCCA+TGG | - | chr1.1:58212259-58212278 | None:intergenic | 30.0% |
| !!! | TTTTAAGGTATTGCTTCCAT+GGG | - | chr1.1:58212258-58212277 | None:intergenic | 30.0% |
| AAAGGTAGGAATAGCACTTA+CGG | + | chr1.1:58210627-58210646 | MS.gene062179:CDS | 35.0% | |
| AAGATTCATCCCAACCATAA+AGG | + | chr1.1:58211513-58211532 | MS.gene062179:CDS | 35.0% | |
| AATGCAAAAGAAACATCCCT+TGG | + | chr1.1:58212711-58212730 | MS.gene062179:CDS | 35.0% | |
| AGCACAACATCAATGAAAGT+GGG | + | chr1.1:58212537-58212556 | MS.gene062179:CDS | 35.0% | |
| AGTTGGAAGAAATGCTATGT+GGG | + | chr1.1:58210690-58210709 | MS.gene062179:CDS | 35.0% | |
| ATAGTACACACTATGGATCT+TGG | + | chr1.1:58211432-58211451 | MS.gene062179:intron | 35.0% | |
| CAATTGGAACCCATAATTGT+TGG | + | chr1.1:58211347-58211366 | MS.gene062179:CDS | 35.0% | |
| CATGATTATTCGACCTGTTT+GGG | + | chr1.1:58211681-58211700 | MS.gene062179:CDS | 35.0% | |
| GAGTAGGATTCCAACAATTA+TGG | - | chr1.1:58211360-58211379 | None:intergenic | 35.0% | |
| GATGGTGTAGACTTATCTTA+AGG | + | chr1.1:58211778-58211797 | MS.gene062179:intron | 35.0% | |
| TAACCATGTGTCGTGTATTA+GGG | + | chr1.1:58211175-58211194 | MS.gene062179:intron | 35.0% | |
| TAGTAAAGCAGGAAAGCAAT+TGG | + | chr1.1:58211331-58211350 | MS.gene062179:CDS | 35.0% | |
| TCAGGCTAATTTAGCAAGAT+GGG | + | chr1.1:58212201-58212220 | MS.gene062179:intron | 35.0% | |
| TTAACCATGTGTCGTGTATT+AGG | + | chr1.1:58211174-58211193 | MS.gene062179:intron | 35.0% | |
| TTACTGTATATCGATCGAGA+AGG | - | chr1.1:58212452-58212471 | None:intergenic | 35.0% | |
| TTCAGCTTGGTTTCAATATC+TGG | + | chr1.1:58211574-58211593 | MS.gene062179:CDS | 35.0% | |
| TTCAGGCTAATTTAGCAAGA+TGG | + | chr1.1:58212200-58212219 | MS.gene062179:intron | 35.0% | |
| TTGAAACCAAGCTGAAAGTT+AGG | - | chr1.1:58211570-58211589 | None:intergenic | 35.0% | |
| ! | AATCCTTTGTATGATGGAGT+TGG | + | chr1.1:58210673-58210692 | MS.gene062179:CDS | 35.0% |
| ! | AGAAGTAGAATGGAGTATCA+AGG | + | chr1.1:58210462-58210481 | MS.gene062179:CDS | 35.0% |
| ! | CATTGATACTTCTGTTGCTT+TGG | - | chr1.1:58212084-58212103 | None:intergenic | 35.0% |
| ! | TTGGAAGGTTAGTTCAAAGA+TGG | + | chr1.1:58211760-58211779 | MS.gene062179:intron | 35.0% |
| !! | ATTTTTGAAGAAAGCTTGGG+AGG | + | chr1.1:58210567-58210586 | MS.gene062179:CDS | 35.0% |
| !! | CAAAGCAACAGAAGTATCAA+TGG | + | chr1.1:58212082-58212101 | MS.gene062179:CDS | 35.0% |
| !! | CAAATGTGATTTAGGTTGTG+TGG | + | chr1.1:58211983-58212002 | MS.gene062179:intron | 35.0% |
| !! | GGACATTTCTGTTTTGAACT+TGG | - | chr1.1:58212862-58212881 | None:intergenic | 35.0% |
| !! | TTCCATTTTTGCATCACCAA+GGG | - | chr1.1:58212730-58212749 | None:intergenic | 35.0% |
| !! | TTTCCATTTTTGCATCACCA+AGG | - | chr1.1:58212731-58212750 | None:intergenic | 35.0% |
| !!! | GAACTCTATGTTTTAGTCAC+CGG | + | chr1.1:58211712-58211731 | MS.gene062179:CDS | 35.0% |
| AAACTTGCCAACTCTTTGGA+AGG | + | chr1.1:58211745-58211764 | MS.gene062179:CDS | 40.0% | |
| ATGGTATAAACCAGCTTCCT+AGG | + | chr1.1:58212101-58212120 | MS.gene062179:intron | 40.0% | |
| CAAAACGAGCCTTTATGGTT+GGG | - | chr1.1:58211525-58211544 | None:intergenic | 40.0% | |
| CTTCCAACTCCATCATACAA+AGG | - | chr1.1:58210679-58210698 | None:intergenic | 40.0% | |
| GAACTAACCTTCCAAAGAGT+TGG | - | chr1.1:58211755-58211774 | None:intergenic | 40.0% | |
| GAGCACAACATCAATGAAAG+TGG | + | chr1.1:58212536-58212555 | MS.gene062179:CDS | 40.0% | |
| GAGCGGTAAAAGAAGTAGAA+TGG | + | chr1.1:58210452-58210471 | MS.gene062179:CDS | 40.0% | |
| GAGTTGGAAGAAATGCTATG+TGG | + | chr1.1:58210689-58210708 | MS.gene062179:CDS | 40.0% | |
| GCATGATTATTCGACCTGTT+TGG | + | chr1.1:58211680-58211699 | MS.gene062179:CDS | 40.0% | |
| GGAAGTAATTCAAGTGGTCA+CGG | + | chr1.1:58212761-58212780 | MS.gene062179:CDS | 40.0% | |
| GGAATCCTACTCTTTCTACT+AGG | + | chr1.1:58211368-58211387 | MS.gene062179:CDS | 40.0% | |
| GTACTCAAAGACTACTACCA+CGG | - | chr1.1:58210725-58210744 | None:intergenic | 40.0% | |
| TATTAGAAACCCTAGGAAGC+TGG | - | chr1.1:58212114-58212133 | None:intergenic | 40.0% | |
| TCAAAACGAGCCTTTATGGT+TGG | - | chr1.1:58211526-58211545 | None:intergenic | 40.0% | |
| TCTTAAGACACTTGCAGAGT+TGG | - | chr1.1:58212565-58212584 | None:intergenic | 40.0% | |
| TGGTATAAACCAGCTTCCTA+GGG | + | chr1.1:58212102-58212121 | MS.gene062179:intron | 40.0% | |
| TGTCGTGTATTAGGGAAAGT+TGG | + | chr1.1:58211183-58211202 | MS.gene062179:intron | 40.0% | |
| TGTTTGATATGGCACGACAA+AGG | + | chr1.1:58211614-58211633 | MS.gene062179:CDS | 40.0% | |
| TTTCCCTAATACACGACACA+TGG | - | chr1.1:58211181-58211200 | None:intergenic | 40.0% | |
| ! | GCATTGTGGCTCCAATTTTA+AGG | - | chr1.1:58212273-58212292 | None:intergenic | 40.0% |
| ! | TCCTGTATTGATGCTCTTGT+TGG | + | chr1.1:58212304-58212323 | MS.gene062179:CDS | 40.0% |
| ! | TGGAGTATCAAGGTAGAAGA+TGG | + | chr1.1:58210472-58210491 | MS.gene062179:CDS | 40.0% |
| !! | ATCCCTTGGTGATGCAAAAA+TGG | + | chr1.1:58212725-58212744 | MS.gene062179:CDS | 40.0% |
| !! | GAAATTCTAGCTCTCTTCCA+TGG | - | chr1.1:58210499-58210518 | None:intergenic | 40.0% |
| !! | TCCAACAAGAGCATCAATAC+AGG | - | chr1.1:58212308-58212327 | None:intergenic | 40.0% |
| AAGAGTTGGCAAGTTTGTCG+AGG | - | chr1.1:58211741-58211760 | None:intergenic | 45.0% | |
| AATGTACACCAAGGGCTAGA+AGG | - | chr1.1:58211304-58211323 | None:intergenic | 45.0% | |
| ACGAAAATTGAAGCGACCGT+GGG | - | chr1.1:58212233-58212252 | None:intergenic | 45.0% | |
| AGCAACCCAATGTACACCAA+GGG | - | chr1.1:58211312-58211331 | None:intergenic | 45.0% | |
| AGCATGTGTGCATTTGTCGT+AGG | + | chr1.1:58210523-58210542 | MS.gene062179:CDS | 45.0% | |
| ATATGTGGAACTACCCTTGC+TGG | + | chr1.1:58211278-58211297 | MS.gene062179:CDS | 45.0% | |
| ATTATTCGACCTGTTTGGGC+TGG | + | chr1.1:58211685-58211704 | MS.gene062179:CDS | 45.0% | |
| CGACAAACTTGCCAACTCTT+TGG | + | chr1.1:58211741-58211760 | MS.gene062179:CDS | 45.0% | |
| CGCCTTAACATACGTCTCTA+GGG | - | chr1.1:58211901-58211920 | None:intergenic | 45.0% | |
| GTAGTCTTTGAGTACACTGC+TGG | + | chr1.1:58210730-58210749 | MS.gene062179:CDS | 45.0% | |
| TACGGAACATTGCTGCAGTT+TGG | + | chr1.1:58212422-58212441 | MS.gene062179:intron | 45.0% | |
| TACTGAAACTGTAGCTCGTG+TGG | + | chr1.1:58212797-58212816 | MS.gene062179:CDS | 45.0% | |
| TAGCAACCCAATGTACACCA+AGG | - | chr1.1:58211313-58211332 | None:intergenic | 45.0% | |
| TCAAGGTAGAAGATGGTCCA+TGG | + | chr1.1:58210479-58210498 | MS.gene062179:CDS | 45.0% | |
| TCGATTGAGCATCACCTCTA+CGG | + | chr1.1:58212404-58212423 | MS.gene062179:intron | 45.0% | |
| TCTTTGAGTACACTGCTGGT+AGG | + | chr1.1:58210734-58210753 | MS.gene062179:intron | 45.0% | |
| TGAAGCTCAATCAGCAAGTG+AGG | + | chr1.1:58212016-58212035 | MS.gene062179:CDS | 45.0% | |
| TGCCCTAGAGACGTATGTTA+AGG | + | chr1.1:58211896-58211915 | MS.gene062179:intron | 45.0% | |
| TTGAAGAAAGCTTGGGAGGT+GGG | + | chr1.1:58210571-58210590 | MS.gene062179:CDS | 45.0% | |
| TTTGAAGAAAGCTTGGGAGG+TGG | + | chr1.1:58210570-58210589 | MS.gene062179:CDS | 45.0% | |
| ! | CATTGGGTTGCTAGTAAAGC+AGG | + | chr1.1:58211320-58211339 | MS.gene062179:CDS | 45.0% |
| ! | GCTTCAATTTTCGTCACCCA+TGG | + | chr1.1:58212239-58212258 | MS.gene062179:CDS | 45.0% |
| ! | TCTAGCCCTTGGTGTACATT+GGG | + | chr1.1:58211304-58211323 | MS.gene062179:CDS | 45.0% |
| ! | TGATTGTTGCTTCCTCATGC+TGG | - | chr1.1:58212935-58212954 | None:intergenic | 45.0% |
| ! | TTCTAGCCCTTGGTGTACAT+TGG | + | chr1.1:58211303-58211322 | MS.gene062179:CDS | 45.0% |
| !!! | AATATGATTTTAATAAATTT+TGG | - | chr1.1:58212674-58212693 | None:intergenic | 5.0% |
| ACTGCAGCAATGTTCCGTAG+AGG | - | chr1.1:58212421-58212440 | None:intergenic | 50.0% | |
| GACGAAAATTGAAGCGACCG+TGG | - | chr1.1:58212234-58212253 | None:intergenic | 50.0% | |
| GCGCCTTAACATACGTCTCT+AGG | - | chr1.1:58211902-58211921 | None:intergenic | 50.0% | |
| GGCAAGTTTGTCGAGGTTTC+CGG | - | chr1.1:58211734-58211753 | None:intergenic | 50.0% | |
| ! | GGAAGCACATCTACGCATTG+TGG | - | chr1.1:58212287-58212306 | None:intergenic | 50.0% |
| !! | AGTTCTAGACCAGCCCAAAC+AGG | - | chr1.1:58211697-58211716 | None:intergenic | 50.0% |
| AAATTGAAGCGACCGTGGGC+AGG | - | chr1.1:58212229-58212248 | None:intergenic | 55.0% | |
| AAGGGCTAGAAGGCCAGCAA+GGG | - | chr1.1:58211294-58211313 | None:intergenic | 55.0% | |
| GATCTTGCCAGACCAGCATG+AGG | + | chr1.1:58212920-58212939 | MS.gene062179:CDS | 55.0% | |
| GGCTCATGATGACAAGGGAG+CGG | + | chr1.1:58210435-58210454 | MS.gene062179:CDS | 55.0% | |
| GTTGCTTCCTCATGCTGGTC+TGG | - | chr1.1:58212930-58212949 | None:intergenic | 55.0% | |
| TATGTGGGCAGTCATGACCG+TGG | + | chr1.1:58210705-58210724 | MS.gene062179:CDS | 55.0% | |
| CAAGGGCTAGAAGGCCAGCA+AGG | - | chr1.1:58211295-58211314 | None:intergenic | 60.0% | |
| !! | CTTGCTGGCCTTCTAGCCCT+TGG | + | chr1.1:58211293-58211312 | MS.gene062179:CDS | 60.0% |
| GCAAGATGGGAGCCTGCCCA+CGG | + | chr1.1:58212214-58212233 | MS.gene062179:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 58210433 | 58212974 | 58210433 | ID=MS.gene062179 |
| chr1.1 | mRNA | 58210433 | 58212974 | 58210433 | ID=MS.gene062179.t1;Parent=MS.gene062179 |
| chr1.1 | exon | 58210433 | 58210751 | 58210433 | ID=MS.gene062179.t1.exon1;Parent=MS.gene062179.t1 |
| chr1.1 | CDS | 58210433 | 58210751 | 58210433 | ID=cds.MS.gene062179.t1;Parent=MS.gene062179.t1 |
| chr1.1 | exon | 58211249 | 58211389 | 58211249 | ID=MS.gene062179.t1.exon2;Parent=MS.gene062179.t1 |
| chr1.1 | CDS | 58211249 | 58211389 | 58211249 | ID=cds.MS.gene062179.t1;Parent=MS.gene062179.t1 |
| chr1.1 | exon | 58211494 | 58211766 | 58211494 | ID=MS.gene062179.t1.exon3;Parent=MS.gene062179.t1 |
| chr1.1 | CDS | 58211494 | 58211766 | 58211494 | ID=cds.MS.gene062179.t1;Parent=MS.gene062179.t1 |
| chr1.1 | exon | 58211997 | 58212103 | 58211997 | ID=MS.gene062179.t1.exon4;Parent=MS.gene062179.t1 |
| chr1.1 | CDS | 58211997 | 58212103 | 58211997 | ID=cds.MS.gene062179.t1;Parent=MS.gene062179.t1 |
| chr1.1 | exon | 58212205 | 58212348 | 58212205 | ID=MS.gene062179.t1.exon5;Parent=MS.gene062179.t1 |
| chr1.1 | CDS | 58212205 | 58212348 | 58212205 | ID=cds.MS.gene062179.t1;Parent=MS.gene062179.t1 |
| chr1.1 | exon | 58212510 | 58212974 | 58212510 | ID=MS.gene062179.t1.exon6;Parent=MS.gene062179.t1 |
| chr1.1 | CDS | 58212510 | 58212974 | 58212510 | ID=cds.MS.gene062179.t1;Parent=MS.gene062179.t1 |
| Gene Sequence |
| Protein sequence |
