AlfalfaGEDB | MS.gene062645

M. sativa cultivar XinJiangDaYe / MS.gene062645

KEGG: -
GO: -
PFAM: PF04654.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062645.t1	XP_013442974.1	97	232	7	0	1	232	1	232	1.70E-119	438.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062645.t1	A0A072THH5	97.0	232	7	0	1	232	1	232	1.2e-119	438.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050680	MS.gene062645	0.800758	1.24E-48	-1.69E-46
MS.gene052190	MS.gene062645	0.816065	6.70E-52	-1.69E-46
MS.gene052333	MS.gene062645	0.815706	8.06E-52	-1.69E-46
MS.gene053166	MS.gene062645	0.828106	1.08E-54	-1.69E-46
MS.gene054559	MS.gene062645	0.817148	3.83E-52	-1.69E-46
MS.gene055356	MS.gene062645	0.80669	7.28E-50	-1.69E-46
MS.gene055701	MS.gene062645	0.838126	3.46E-57	-1.69E-46
MS.gene059609	MS.gene062645	0.8314	1.71E-55	-1.69E-46
MS.gene061114	MS.gene062645	-0.818962	1.49E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062645.t1	MTR_0054s0080	96.983	232	7	0	1	232	1	232	6.80e-167	459
MS.gene062645.t1	MTR_1g077210	73.418	237	58	3	1	232	1	237	2.76e-128	362
MS.gene062645.t1	MTR_3g109280	73.636	220	58	0	1	220	1	220	3.92e-118	336
MS.gene062645.t1	MTR_1g009030	65.517	232	65	2	1	232	1	217	1.20e-108	311
MS.gene062645.t1	MTR_6g066040	60.550	218	86	0	1	218	1	218	6.97e-97	282
MS.gene062645.t1	MTR_6g066090	54.088	159	70	1	74	232	1	156	1.35e-53	170
MS.gene062645.t1	MTR_5g068640	35.398	226	139	2	8	227	6	230	1.37e-45	152
MS.gene062645.t1	MTR_8g106520	36.493	211	119	3	8	213	6	206	3.12e-37	130
MS.gene062645.t1	MTR_7g073370	35.885	209	131	1	7	215	6	211	4.48e-30	111
MS.gene062645.t1	MTR_8g106530	32.850	207	134	1	7	213	6	207	2.76e-27	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062645.t1	AT4G31330	61.181	237	85	2	1	231	1	236	6.18e-103	298
MS.gene062645.t1	AT5G10580	57.025	242	93	2	1	231	1	242	3.73e-97	284
MS.gene062645.t1	AT5G10580	60.987	223	79	1	1	215	1	223	7.08e-97	283
MS.gene062645.t1	AT5G10580	60.987	223	79	1	1	215	1	223	7.08e-97	283
MS.gene062645.t1	AT5G10580	59.459	185	67	1	1	177	1	185	2.40e-78	234
MS.gene062645.t1	AT5G24790	52.790	233	104	2	1	227	1	233	2.01e-76	231
MS.gene062645.t1	AT5G24600	32.636	239	147	3	4	230	2	238	1.32e-39	137
MS.gene062645.t1	AT5G24600	35.294	221	123	4	4	206	2	220	2.78e-38	133
MS.gene062645.t1	AT3G18215	34.597	211	138	0	3	213	2	212	1.21e-37	132
MS.gene062645.t1	AT5G43180	32.727	220	133	2	9	213	8	227	1.45e-30	113

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Find 44 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGAGTCAAATAATC+AGG	0.400332	6.4:-46460076	None:intergenic
AAGTCTTCGAAACCTTATAA+TGG	0.287193	6.4:+46459796	MS.gene062645:CDS
ACAACCTTGACATTGTTTGT+GGG	0.513934	6.4:+46460224	MS.gene062645:CDS
ACATCAATTCTCTTATCAGC+TGG	0.497240	6.4:+46459839	MS.gene062645:CDS
ACCAAGGAAATAACATCTTG+TGG	0.601619	6.4:-46460049	None:intergenic
ACCACAAGATGTTATTTCCT+TGG	0.397532	6.4:+46460048	MS.gene062645:CDS
AGGAACTACTTTGAACACTG+TGG	0.685779	6.4:+46460105	MS.gene062645:CDS
AGTCTTCGAAACCTTATAAT+GGG	0.413024	6.4:+46459797	MS.gene062645:CDS
ATAAGTACTGCTTATGATAG+CGG	0.623565	6.4:-46459867	None:intergenic
ATAGTCATCAGAAACCCTAA+TGG	0.529052	6.4:-46457214	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTATATGGACAGAAAAGT+TGG	-	chr6.4:46457588-46457607	None:intergenic	30.0%
AAGTCTTCGAAACCTTATAA+TGG	+	chr6.4:46459796-46459815	MS.gene062645:CDS	30.0%
AATGAGACTCTACACTTAAT+GGG	-	chr6.4:46458729-46458748	None:intergenic	30.0%
AATTGAGTACTAAGGAGTTT+AGG	-	chr6.4:46457533-46457552	None:intergenic	30.0%
AGAAAAAGGTGAGTAGAATA+TGG	+	chr6.4:46459087-46459106	MS.gene062645:intron	30.0%
AGAAGTAGAGTCATATTCTA+CGG	-	chr6.4:46459263-46459282	None:intergenic	30.0%
AGACTTTGTTAGATTCAGAT+AGG	+	chr6.4:46457719-46457738	MS.gene062645:intron	30.0%
AGCCCAACAAAAATTAAGAA+TGG	-	chr6.4:46458273-46458292	None:intergenic	30.0%
AGTCTTCGAAACCTTATAAT+GGG	+	chr6.4:46459797-46459816	MS.gene062645:CDS	30.0%
ATATGATGCTTGTACCATTA+GGG	+	chr6.4:46457200-46457219	MS.gene062645:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	46457175	46460294	46457175	ID=MS.gene062645
chr6.4	mRNA	46457175	46460294	46457175	ID=MS.gene062645.t1;Parent=MS.gene062645
chr6.4	exon	46457175	46457342	46457175	ID=MS.gene062645.t1.exon1;Parent=MS.gene062645.t1
chr6.4	CDS	46457175	46457342	46457175	ID=cds.MS.gene062645.t1;Parent=MS.gene062645.t1
chr6.4	exon	46459764	46460294	46459764	ID=MS.gene062645.t1.exon2;Parent=MS.gene062645.t1
chr6.4	CDS	46459764	46460294	46459764	ID=cds.MS.gene062645.t1;Parent=MS.gene062645.t1

Gene Sequence

>MS.gene062645

ATGGAATGGAAGACATATTATTTGGATATGATGCTTGTACCATTAGGGTTTCTGATGACTATTGGTTATCATGTATGGTTGTGGCATAAGACTAGGTCAGAGCCTTTTTCAACTACAATTGGAATAAATGCTCATGCTAGACGATTTTGGGTTCCTACCATGTTGAAGGTAATTGAATACTTTTGTATTTTATGTTGTAATTTGATTTTTTTTTCCTTGTCCTTTATCCTTATTTTTCATAGTCAAAACATATTTTTCGATGGTGGCCGGAGTTTGAACCCTGAATCTTTCATTTATTATGCATTGTCTCTACCAACTGAGTTAAGTTCACGAGTAATCATAGTCAAAACATATGCCTAAACTCCTTAGTACTCAATTATTAAATATTATAGTTGCTAATTTTGATATATCCAACTTTTCTGTCCATATACTTCTCATTTTTTCAATAAATTACCAACTTTCACCAAATGAATAATATTAATCACCAACTCTTTGATTTTGCTTTCCACAACTCAAGCTACTCCACCTGTTAATTCGTCAATGAAGACTTTGTTAGATTCAGATAGGAAGATTAAGAGATAACTTCCTAGTCAGCCTCCAGACAGAGACGGATCTAGAAACAAAGTTTTAATGTGGCTAAACAAATAGTGACCAATCTTTAAAATTGTATACTCTTACGATTGAAATTTTGGTAACTATTTTTGTCACTAATCAAGTTTGAACCGATTTTTTATAGTTTATACATAGGCGACCGACATTTCGGTCACTATATCCATCTCTAATCAAGTTAGCAACTCATTTTTAAGCTTTAGCGACCGAAATTTCAATCTCTAAAATAAAAATTTCTATTTTTTAATAAATTATGGTGTGGCTATAGCCACACCAAGACTTACATAGGTTTGCCCCTGCCTTCAGGTCTAATAATCAAATTACATTTAGAGTGTTTTTGGATGTATAATTGGAAATTTTAGGAAACTAGAATTCAAAAGGCAATTTGTTTAAAAAAAAAAAAAACAAATTGTAGACAATTCAAATGCATTGATTTAATTCTCTTTAAGTTTATATTGTTTTATTTGGATACAGTAATAAAACTGTCCATTCTTAATTTTTGTTGGGCTATTTTTATGAAAATTTGAAATATGAAAAATAGGGATTTATTTGCAAATTTTAAAAATTTAAAGACCAATTTGTGAATTTTGAAAATTTTAAAGGACCAGATTCCAATTTTTCAAAATTTATAGGGACCAATGTGTAAAAATTTAGAAATTATGCATTCAATATCTTAAATTTTTTAAAAGTTATCTTTTCAATATGAGCACTGCTATTGTGCACGACTAATTAAGAGCACGACTCACACACAACAAGGCTTTAATTTTGTTGAAATTAAATTTTAATTAAAATAAATGTTTAAAACCAAAAAAAGTGACTTGTTGAATACAAGTCGTGTGCCTTACACGACAAAAGTTGTCGTGCTATTAAGCATAATTCTTTCAATATAAAACTTCTATTCTAATTTTCATTTTTAGTTTCTTAACTTATGTCATAGCATAACCCATTAAGTGTAGAGTCTCATTAATTTGTTAAGAATCCCTTTCTAGCACTCACTTTAACACTTACAATATTCTTTTATTAGATGAAATCAATGTAGGTCGCATACTTTAAAAATGATTTTCACATAAAGTGGTGAAATCCACGTAATTTCATCCGATAGAAAAATAAATGTTCGAAAAAGAGTGTTAATATTACTTTTGACGAGAAACAATCTAGAATCTTGAATATGAGAGAATCTACAAATAATTGGATTCCCTAGGCTTTGCTTTGGTACCTTTGACCACAATAATGTAGGGCCGTTTGCAAAATATGATATTGCCACTTTCATTCAAAAAGAGGGTTAGTAACTTTAAAATAAAAAAGAAAAAGGTGAGTAGAATATGGACTCCACTTTGGTGCCATTAATGGCACCAATGACACCATACCATTGCATCTCCATCACACACACACATCACACACACATCCCCACACATCAACGGTCAGGATTGGTTCTATGGCACCAATGGCACCATTGCTATGGCACTGAAGTATTTTCCGTAGAATATGACTCTACTTCTTTAGTGTTATTGTTTTGATTGTAGTCTTACCAAGAAAAAGAAAATGACATAAACACATTTTTAAACTCTTATTTTAAAACTCACACTTCTTTTAATTGAGAAAGAAATGTTTAAACTAAATTATTCTCCCCTTGAGTGATGTTTAATTACACCCACTTTATTTAAAAAGGTAAATATGTGTTACACTAGAATTTATTTTATTATGAACAGGGATTCTAATAATAGCTAAAAACTTTAAACATTATTTGAAGAAAAAAAATCCTCCAAATTTCTCCAATTTTATTTTATTTCTATATTACTACAATTGATAATAGTTGGATTTAAAAAACTTGAGGAACAAAATCCTTACATAATGAAAAAAAGTTGTGTTACTATTTTTATGTAAACCTATAGGGTACAATGGCAATGGTAGAAGTGACTTAATTTTCATATTTCACAAACTTGATAAACTCTTATGCTCAAATCATTATGTCAAATTCAGGATATTGAAAAGAAGAACATTCTAGTAGCTCAAAGTCTTCGAAACCTTATAATGGGATCGACACTTATGGCCACTACATCAATTCTCTTATCAGCTGGCTTAGCCGCTATCATAAGCAGTACTTATAGTGTGAAAAAGCCTCTTGACGACGTTCTCTACGGTGCTCACGGCGAATTTATGGAAGCACTTAAATATGTGACACTTCTTACCATATTCTTATTCTCATTTTTCTGCCACAGTCTTTCAATTAGGTTTCTCAACCAACTAAGCCTCCTTATATGCACACCACAAGATGTTATTTCCTTGGTGACTCCTGATTATTTGACTCTGATTTTAGAGAGAGGAACTACTTTGAACACTGTGGGGAATAGGATTTTCTACTCTGCTCTTCCACTTTTGCTTTGGATATTTGGTCCAGTCTTGGTTTTATTGTGCTCTTTGGCTATGTTGCTAGTGTTTTACAACCTTGACATTGTTTGTGGGAGTGGAAAAGCTAAGATATTACTTAGTGATGAAAGCAATTATGTCTAA

Protein sequence

>MS.gene062645.t1

MEWKTYYLDMMLVPLGFLMTIGYHVWLWHKTRSEPFSTTIGINAHARRFWVPTMLKDIEKKNILVAQSLRNLIMGSTLMATTSILLSAGLAAIISSTYSVKKPLDDVLYGAHGEFMEALKYVTLLTIFLFSFFCHSLSIRFLNQLSLLICTPQDVISLVTPDYLTLILERGTTLNTVGNRIFYSALPLLLWIFGPVLVLLCSLAMLLVFYNLDIVCGSGKAKILLSDESNYV