Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062645.t1 | XP_013442974.1 | 97 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 1.70E-119 | 438.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062645.t1 | A0A072THH5 | 97.0 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 1.2e-119 | 438.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050680 | MS.gene062645 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene052190 | MS.gene062645 | 0.816065 | 6.70E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene062645 | 0.815706 | 8.06E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene062645 | 0.828106 | 1.08E-54 | -1.69E-46 |
| MS.gene054559 | MS.gene062645 | 0.817148 | 3.83E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene062645 | 0.80669 | 7.28E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene062645 | 0.838126 | 3.46E-57 | -1.69E-46 |
| MS.gene059609 | MS.gene062645 | 0.8314 | 1.71E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene062645 | -0.818962 | 1.49E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062645.t1 | MTR_0054s0080 | 96.983 | 232 | 7 | 0 | 1 | 232 | 1 | 232 | 6.80e-167 | 459 |
| MS.gene062645.t1 | MTR_1g077210 | 73.418 | 237 | 58 | 3 | 1 | 232 | 1 | 237 | 2.76e-128 | 362 |
| MS.gene062645.t1 | MTR_3g109280 | 73.636 | 220 | 58 | 0 | 1 | 220 | 1 | 220 | 3.92e-118 | 336 |
| MS.gene062645.t1 | MTR_1g009030 | 65.517 | 232 | 65 | 2 | 1 | 232 | 1 | 217 | 1.20e-108 | 311 |
| MS.gene062645.t1 | MTR_6g066040 | 60.550 | 218 | 86 | 0 | 1 | 218 | 1 | 218 | 6.97e-97 | 282 |
| MS.gene062645.t1 | MTR_6g066090 | 54.088 | 159 | 70 | 1 | 74 | 232 | 1 | 156 | 1.35e-53 | 170 |
| MS.gene062645.t1 | MTR_5g068640 | 35.398 | 226 | 139 | 2 | 8 | 227 | 6 | 230 | 1.37e-45 | 152 |
| MS.gene062645.t1 | MTR_8g106520 | 36.493 | 211 | 119 | 3 | 8 | 213 | 6 | 206 | 3.12e-37 | 130 |
| MS.gene062645.t1 | MTR_7g073370 | 35.885 | 209 | 131 | 1 | 7 | 215 | 6 | 211 | 4.48e-30 | 111 |
| MS.gene062645.t1 | MTR_8g106530 | 32.850 | 207 | 134 | 1 | 7 | 213 | 6 | 207 | 2.76e-27 | 108 |
| MS.gene062645.t1 | MTR_8g106530 | 31.847 | 157 | 101 | 2 | 57 | 213 | 312 | 462 | 8.95e-14 | 70.5 |
| MS.gene062645.t1 | MTR_2g014820 | 33.333 | 213 | 136 | 4 | 1 | 212 | 644 | 851 | 5.41e-26 | 106 |
| MS.gene062645.t1 | MTR_8g106520 | 33.962 | 159 | 90 | 3 | 60 | 213 | 2 | 150 | 1.54e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062645.t1 | AT4G31330 | 61.181 | 237 | 85 | 2 | 1 | 231 | 1 | 236 | 6.18e-103 | 298 |
| MS.gene062645.t1 | AT5G10580 | 57.025 | 242 | 93 | 2 | 1 | 231 | 1 | 242 | 3.73e-97 | 284 |
| MS.gene062645.t1 | AT5G10580 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 7.08e-97 | 283 |
| MS.gene062645.t1 | AT5G10580 | 60.987 | 223 | 79 | 1 | 1 | 215 | 1 | 223 | 7.08e-97 | 283 |
| MS.gene062645.t1 | AT5G10580 | 59.459 | 185 | 67 | 1 | 1 | 177 | 1 | 185 | 2.40e-78 | 234 |
| MS.gene062645.t1 | AT5G24790 | 52.790 | 233 | 104 | 2 | 1 | 227 | 1 | 233 | 2.01e-76 | 231 |
| MS.gene062645.t1 | AT5G24600 | 32.636 | 239 | 147 | 3 | 4 | 230 | 2 | 238 | 1.32e-39 | 137 |
| MS.gene062645.t1 | AT5G24600 | 35.294 | 221 | 123 | 4 | 4 | 206 | 2 | 220 | 2.78e-38 | 133 |
| MS.gene062645.t1 | AT3G18215 | 34.597 | 211 | 138 | 0 | 3 | 213 | 2 | 212 | 1.21e-37 | 132 |
| MS.gene062645.t1 | AT5G43180 | 32.727 | 220 | 133 | 2 | 9 | 213 | 8 | 227 | 1.45e-30 | 113 |
| MS.gene062645.t1 | AT5G46060 | 32.701 | 211 | 138 | 2 | 4 | 213 | 6 | 213 | 2.35e-17 | 78.6 |
| MS.gene062645.t1 | AT3G18215 | 32.143 | 140 | 95 | 0 | 74 | 213 | 1 | 140 | 5.66e-17 | 76.3 |
Find 44 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGCTCACGGCGAATTTA+TGG | 0.128774 | 6.4:+46459922 | MS.gene062645:CDS |
| ATGCTCATGCTAGACGATTT+TGG | 0.137485 | 6.4:+46457302 | MS.gene062645:CDS |
| GGAATGGAAGACATATTATT+TGG | 0.196486 | 6.4:+46457177 | MS.gene062645:CDS |
| ATTCCAATTGTAGTTGAAAA+AGG | 0.216950 | 6.4:-46457277 | None:intergenic |
| CATCTTGTGGTGTGCATATA+AGG | 0.236309 | 6.4:-46460036 | None:intergenic |
| AAGTCTTCGAAACCTTATAA+TGG | 0.287193 | 6.4:+46459796 | MS.gene062645:CDS |
| CTTTGAACACTGTGGGGAAT+AGG | 0.316144 | 6.4:+46460113 | MS.gene062645:CDS |
| TTAGGGTTTCTGATGACTAT+TGG | 0.325997 | 6.4:+46457217 | MS.gene062645:CDS |
| TCTGCCACAGTCTTTCAATT+AGG | 0.330602 | 6.4:+46459993 | MS.gene062645:CDS |
| GATATGATGCTTGTACCATT+AGG | 0.338920 | 6.4:+46457199 | MS.gene062645:CDS |
| ATATGATGCTTGTACCATTA+GGG | 0.359675 | 6.4:+46457200 | MS.gene062645:CDS |
| TATAATGGGATCGACACTTA+TGG | 0.380623 | 6.4:+46459811 | MS.gene062645:CDS |
| TGCATATAAGGAGGCTTAGT+TGG | 0.387979 | 6.4:-46460024 | None:intergenic |
| CTTGACATTGTTTGTGGGAG+TGG | 0.388423 | 6.4:+46460229 | MS.gene062645:CDS |
| ACCACAAGATGTTATTTCCT+TGG | 0.397532 | 6.4:+46460048 | MS.gene062645:CDS |
| TAAGTGTCGATCCCATTATA+AGG | 0.397897 | 6.4:-46459808 | None:intergenic |
| AAAATCAGAGTCAAATAATC+AGG | 0.400332 | 6.4:-46460076 | None:intergenic |
| TTGGATATTTGGTCCAGTCT+TGG | 0.409834 | 6.4:+46460165 | MS.gene062645:CDS |
| AGTCTTCGAAACCTTATAAT+GGG | 0.413024 | 6.4:+46459797 | MS.gene062645:CDS |
| CCAAATATCCAAAGCAAAAG+TGG | 0.434862 | 6.4:-46460154 | None:intergenic |
| TGACTATTGGTTATCATGTA+TGG | 0.440284 | 6.4:+46457230 | MS.gene062645:CDS |
| TTGGGTTCCTACCATGTTGA+AGG | 0.462529 | 6.4:+46457321 | MS.gene062645:CDS |
| TACAACCTTGACATTGTTTG+TGG | 0.466707 | 6.4:+46460223 | MS.gene062645:CDS |
| ACATCAATTCTCTTATCAGC+TGG | 0.497240 | 6.4:+46459839 | MS.gene062645:CDS |
| ACAACCTTGACATTGTTTGT+GGG | 0.513934 | 6.4:+46460224 | MS.gene062645:CDS |
| CCTCTTGACGACGTTCTCTA+CGG | 0.522521 | 6.4:+46459902 | MS.gene062645:CDS |
| GAGCACAATAAAACCAAGAC+TGG | 0.525087 | 6.4:-46460178 | None:intergenic |
| ATAGTCATCAGAAACCCTAA+TGG | 0.529052 | 6.4:-46457214 | None:intergenic |
| GGAACTACTTTGAACACTGT+GGG | 0.559223 | 6.4:+46460106 | MS.gene062645:CDS |
| GACGTTCTCTACGGTGCTCA+CGG | 0.584859 | 6.4:+46459911 | MS.gene062645:CDS |
| CCGTAGAGAACGTCGTCAAG+AGG | 0.592029 | 6.4:-46459902 | None:intergenic |
| TTGGTTATCATGTATGGTTG+TGG | 0.598003 | 6.4:+46457236 | MS.gene062645:CDS |
| CACTCCCACAAACAATGTCA+AGG | 0.598937 | 6.4:-46460228 | None:intergenic |
| ACCAAGGAAATAACATCTTG+TGG | 0.601619 | 6.4:-46460049 | None:intergenic |
| TATGGTTGTGGCATAAGACT+AGG | 0.604302 | 6.4:+46457248 | MS.gene062645:CDS |
| TCAATTACCTTCAACATGGT+AGG | 0.612368 | 6.4:-46457328 | None:intergenic |
| ATAAGTACTGCTTATGATAG+CGG | 0.623565 | 6.4:-46459867 | None:intergenic |
| TGATAAGAGAATTGATGTAG+TGG | 0.631774 | 6.4:-46459834 | None:intergenic |
| GAAACCTAATTGAAAGACTG+TGG | 0.655096 | 6.4:-46459997 | None:intergenic |
| CAAATAATCAGGAGTCACCA+AGG | 0.660598 | 6.4:-46460065 | None:intergenic |
| CTTGTGGTGTGCATATAAGG+AGG | 0.664841 | 6.4:-46460033 | None:intergenic |
| AGGAACTACTTTGAACACTG+TGG | 0.685779 | 6.4:+46460105 | MS.gene062645:CDS |
| GAACTACTTTGAACACTGTG+GGG | 0.711042 | 6.4:+46460107 | MS.gene062645:CDS |
| GTATTCAATTACCTTCAACA+TGG | 0.711102 | 6.4:-46457332 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTATAAACTATAAAAAAT+CGG | - | chr6.4:46457900-46457919 | None:intergenic | 10.0% |
| !!! | AAATTTGAAATATGAAAAAT+AGG | + | chr6.4:46458303-46458322 | MS.gene062645:intron | 10.0% |
| !!! | AATTTATTTTATTATGAACA+GGG | + | chr6.4:46459472-46459491 | MS.gene062645:intron | 10.0% |
| !!! | AATTTGAAATATGAAAAATA+GGG | + | chr6.4:46458304-46458323 | MS.gene062645:intron | 10.0% |
| !!! | ATTTTTTATAGTTTATACAT+AGG | + | chr6.4:46457900-46457919 | MS.gene062645:intron | 10.0% |
| !!! | CTTTAAAATAAAAAAGAAAA+AGG | + | chr6.4:46459073-46459092 | MS.gene062645:intron | 10.0% |
| !!! | TAAGTTTATATTGTTTTATT+TGG | + | chr6.4:46458229-46458248 | MS.gene062645:intron | 10.0% |
| !! | AAAATAAAATTGGAGAAATT+TGG | - | chr6.4:46459549-46459568 | None:intergenic | 15.0% |
| !! | TATTTAATAATTGAGTACTA+AGG | - | chr6.4:46457541-46457560 | None:intergenic | 15.0% |
| !!! | AATTTTCAAAATTCACAAAT+TGG | - | chr6.4:46458360-46458379 | None:intergenic | 15.0% |
| !!! | ATTTACCTTTTTAAATAAAG+TGG | - | chr6.4:46459438-46459457 | None:intergenic | 15.0% |
| !!! | ATTTCTAAATTTTTACACAT+TGG | - | chr6.4:46458422-46458441 | None:intergenic | 15.0% |
| !!! | CCAATTTTTCAAAATTTATA+GGG | + | chr6.4:46458395-46458414 | MS.gene062645:intron | 15.0% |
| !!! | GAATTTATTTTATTATGAAC+AGG | + | chr6.4:46459471-46459490 | MS.gene062645:intron | 15.0% |
| !!! | GTGAATTTTGAAAATTTTAA+AGG | + | chr6.4:46458364-46458383 | MS.gene062645:intron | 15.0% |
| !!! | TATTTTAGAGATTGAAATTT+CGG | - | chr6.4:46457993-46458012 | None:intergenic | 15.0% |
| !!! | TATTTTTATGTAAACCTATA+GGG | + | chr6.4:46459655-46459674 | MS.gene062645:intron | 15.0% |
| !!! | TCCAATTTTTCAAAATTTAT+AGG | + | chr6.4:46458394-46458413 | MS.gene062645:intron | 15.0% |
| !!! | TTTACCTTTTTAAATAAAGT+GGG | - | chr6.4:46459437-46459456 | None:intergenic | 15.0% |
| !!! | TTTTTTAATAAATTATGGTG+TGG | + | chr6.4:46458023-46458042 | MS.gene062645:intron | 15.0% |
| !! | ACTATGAAAAATAAGGATAA+AGG | - | chr6.4:46457398-46457417 | None:intergenic | 20.0% |
| !! | CATAATAAATGAAAGATTCA+GGG | - | chr6.4:46457456-46457475 | None:intergenic | 20.0% |
| !! | GAAAAATGAGAATAAGAATA+TGG | - | chr6.4:46459975-46459994 | None:intergenic | 20.0% |
| !! | GGTGATTAATATTATTCATT+TGG | - | chr6.4:46457641-46457660 | None:intergenic | 20.0% |
| !! | TTATTAGATGAAATCAATGT+AGG | + | chr6.4:46458801-46458820 | MS.gene062645:intron | 20.0% |
| !!! | AAAATGATTTTCACATAAAG+TGG | + | chr6.4:46458836-46458855 | MS.gene062645:intron | 20.0% |
| !!! | AATTACATTTAGAGTGTTTT+TGG | + | chr6.4:46458102-46458121 | MS.gene062645:intron | 20.0% |
| !!! | AATTTTGAAAAATTGGAATC+TGG | - | chr6.4:46458391-46458410 | None:intergenic | 20.0% |
| !!! | CAACTTTTTTTCATTATGTA+AGG | - | chr6.4:46459629-46459648 | None:intergenic | 20.0% |
| !!! | CCCTATAAATTTTGAAAAAT+TGG | - | chr6.4:46458398-46458417 | None:intergenic | 20.0% |
| !!! | CTATTTTTATGTAAACCTAT+AGG | + | chr6.4:46459654-46459673 | MS.gene062645:intron | 20.0% |
| !!! | GAGTATACAATTTTAAAGAT+TGG | - | chr6.4:46457829-46457848 | None:intergenic | 20.0% |
| !!! | GATGTATAATTGGAAATTTT+AGG | + | chr6.4:46458124-46458143 | MS.gene062645:intron | 20.0% |
| !!! | TCGAACATTTATTTTTCTAT+CGG | - | chr6.4:46458882-46458901 | None:intergenic | 20.0% |
| !!! | TGTTTTGACTATGAAAAATA+AGG | - | chr6.4:46457405-46457424 | None:intergenic | 20.0% |
| !!! | TTACTACAATTGATAATAGT+TGG | + | chr6.4:46459578-46459597 | MS.gene062645:intron | 20.0% |
| !!! | TTATGTCATTTTCTTTTTCT+TGG | - | chr6.4:46459315-46459334 | None:intergenic | 20.0% |
| !!! | TTGAAAAAATGAGAAGTATA+TGG | - | chr6.4:46457601-46457620 | None:intergenic | 20.0% |
| ! | AAAAATAAGGATAAAGGACA+AGG | - | chr6.4:46457392-46457411 | None:intergenic | 25.0% |
| ! | AAAATCAGAGTCAAATAATC+AGG | - | chr6.4:46460079-46460098 | None:intergenic | 25.0% |
| ! | AATTTGATTATTAGACCTGA+AGG | - | chr6.4:46458086-46458105 | None:intergenic | 25.0% |
| ! | AGTTGGATTTAAAAAACTTG+AGG | + | chr6.4:46459595-46459614 | MS.gene062645:intron | 25.0% |
| ! | ATAAAATTGGAGAAATTTGG+AGG | - | chr6.4:46459546-46459565 | None:intergenic | 25.0% |
| ! | ATTCCAATTGTAGTTGAAAA+AGG | - | chr6.4:46457280-46457299 | None:intergenic | 25.0% |
| ! | CAAATCATTATGTCAAATTC+AGG | + | chr6.4:46459742-46459761 | MS.gene062645:intron | 25.0% |
| ! | GCATAATAAATGAAAGATTC+AGG | - | chr6.4:46457457-46457476 | None:intergenic | 25.0% |
| ! | TGAGAGAATCTACAAATAAT+TGG | + | chr6.4:46458953-46458972 | MS.gene062645:intron | 25.0% |
| ! | TGTAATTAAACATCACTCAA+GGG | - | chr6.4:46459414-46459433 | None:intergenic | 25.0% |
| ! | TTAGGAAACTAGAATTCAAA+AGG | + | chr6.4:46458142-46458161 | MS.gene062645:intron | 25.0% |
| !! | ATTATTCATTTGGTGAAAGT+TGG | - | chr6.4:46457631-46457650 | None:intergenic | 25.0% |
| !! | GCAATATCATATTTTGCAAA+CGG | - | chr6.4:46459025-46459044 | None:intergenic | 25.0% |
| !! | GTCCATTCTTAATTTTTGTT+GGG | + | chr6.4:46458268-46458287 | MS.gene062645:intron | 25.0% |
| !! | TACACCCACTTTATTTAAAA+AGG | + | chr6.4:46459430-46459449 | MS.gene062645:intron | 25.0% |
| !! | TACTCTTACGATTGAAATTT+TGG | + | chr6.4:46457844-46457863 | MS.gene062645:intron | 25.0% |
| !! | TGTCCATTCTTAATTTTTGT+TGG | + | chr6.4:46458267-46458286 | MS.gene062645:intron | 25.0% |
| !!! | AGTCAAAACATATTTTTCGA+TGG | + | chr6.4:46457415-46457434 | MS.gene062645:intron | 25.0% |
| !!! | AGTGTTTTTGGATGTATAAT+TGG | + | chr6.4:46458114-46458133 | MS.gene062645:intron | 25.0% |
| !!! | ATTCAACAAGTCACTTTTTT+TGG | - | chr6.4:46458591-46458610 | None:intergenic | 25.0% |
| !!! | CTAGAAACAAAGTTTTAATG+TGG | + | chr6.4:46457788-46457807 | MS.gene062645:intron | 25.0% |
| AAGTATATGGACAGAAAAGT+TGG | - | chr6.4:46457588-46457607 | None:intergenic | 30.0% | |
| AAGTCTTCGAAACCTTATAA+TGG | + | chr6.4:46459796-46459815 | MS.gene062645:CDS | 30.0% | |
| AATGAGACTCTACACTTAAT+GGG | - | chr6.4:46458729-46458748 | None:intergenic | 30.0% | |
| AATTGAGTACTAAGGAGTTT+AGG | - | chr6.4:46457533-46457552 | None:intergenic | 30.0% | |
| AGAAAAAGGTGAGTAGAATA+TGG | + | chr6.4:46459087-46459106 | MS.gene062645:intron | 30.0% | |
| AGAAGTAGAGTCATATTCTA+CGG | - | chr6.4:46459263-46459282 | None:intergenic | 30.0% | |
| AGACTTTGTTAGATTCAGAT+AGG | + | chr6.4:46457719-46457738 | MS.gene062645:intron | 30.0% | |
| AGCCCAACAAAAATTAAGAA+TGG | - | chr6.4:46458273-46458292 | None:intergenic | 30.0% | |
| AGTCTTCGAAACCTTATAAT+GGG | + | chr6.4:46459797-46459816 | MS.gene062645:CDS | 30.0% | |
| ATATGATGCTTGTACCATTA+GGG | + | chr6.4:46457200-46457219 | MS.gene062645:CDS | 30.0% | |
| GGAATGGAAGACATATTATT+TGG | + | chr6.4:46457177-46457196 | MS.gene062645:CDS | 30.0% | |
| GTAATTAAACATCACTCAAG+GGG | - | chr6.4:46459413-46459432 | None:intergenic | 30.0% | |
| GTATTCAATTACCTTCAACA+TGG | - | chr6.4:46457335-46457354 | None:intergenic | 30.0% | |
| GTGTAATTAAACATCACTCA+AGG | - | chr6.4:46459415-46459434 | None:intergenic | 30.0% | |
| TAATGAGACTCTACACTTAA+TGG | - | chr6.4:46458730-46458749 | None:intergenic | 30.0% | |
| TACAAATAATTGGATTCCCT+AGG | + | chr6.4:46458963-46458982 | MS.gene062645:intron | 30.0% | |
| TGATAAGAGAATTGATGTAG+TGG | - | chr6.4:46459837-46459856 | None:intergenic | 30.0% | |
| ! | ATAAGTACTGCTTATGATAG+CGG | - | chr6.4:46459870-46459889 | None:intergenic | 30.0% |
| ! | TGACTATTGGTTATCATGTA+TGG | + | chr6.4:46457230-46457249 | MS.gene062645:CDS | 30.0% |
| !! | CAAAACATATTTTTCGATGG+TGG | + | chr6.4:46457418-46457437 | MS.gene062645:intron | 30.0% |
| ACAACCTTGACATTGTTTGT+GGG | + | chr6.4:46460224-46460243 | MS.gene062645:CDS | 35.0% | |
| ACATCAATTCTCTTATCAGC+TGG | + | chr6.4:46459839-46459858 | MS.gene062645:CDS | 35.0% | |
| ACCAAGGAAATAACATCTTG+TGG | - | chr6.4:46460052-46460071 | None:intergenic | 35.0% | |
| ACCTTTGACCACAATAATGT+AGG | + | chr6.4:46458998-46459017 | MS.gene062645:intron | 35.0% | |
| ATAGTCATCAGAAACCCTAA+TGG | - | chr6.4:46457217-46457236 | None:intergenic | 35.0% | |
| CCAAATATCCAAAGCAAAAG+TGG | - | chr6.4:46460157-46460176 | None:intergenic | 35.0% | |
| CCTTTGACCACAATAATGTA+GGG | + | chr6.4:46458999-46459018 | MS.gene062645:intron | 35.0% | |
| GAAACCTAATTGAAAGACTG+TGG | - | chr6.4:46460000-46460019 | None:intergenic | 35.0% | |
| GATATGATGCTTGTACCATT+AGG | + | chr6.4:46457199-46457218 | MS.gene062645:CDS | 35.0% | |
| GGAAAGCAAAATCAAAGAGT+TGG | - | chr6.4:46457662-46457681 | None:intergenic | 35.0% | |
| GTCTTCATTGACGAATTAAC+AGG | - | chr6.4:46457703-46457722 | None:intergenic | 35.0% | |
| GTTAAAGTGAGTGCTAGAAA+GGG | - | chr6.4:46458766-46458785 | None:intergenic | 35.0% | |
| GTTGCTAACTTGATTAGAGA+TGG | - | chr6.4:46457950-46457969 | None:intergenic | 35.0% | |
| TACAACCTTGACATTGTTTG+TGG | + | chr6.4:46460223-46460242 | MS.gene062645:CDS | 35.0% | |
| TCAATTACCTTCAACATGGT+AGG | - | chr6.4:46457331-46457350 | None:intergenic | 35.0% | |
| TGTAAACCTATAGGGTACAA+TGG | + | chr6.4:46459663-46459682 | MS.gene062645:intron | 35.0% | |
| TGTTAAAGTGAGTGCTAGAA+AGG | - | chr6.4:46458767-46458786 | None:intergenic | 35.0% | |
| TTAGGGTTTCTGATGACTAT+TGG | + | chr6.4:46457217-46457236 | MS.gene062645:CDS | 35.0% | |
| TTCATTGACGAATTAACAGG+TGG | - | chr6.4:46457700-46457719 | None:intergenic | 35.0% | |
| TTCTATCGGATGAAATTACG+TGG | - | chr6.4:46458868-46458887 | None:intergenic | 35.0% | |
| TTGGTTATCATGTATGGTTG+TGG | + | chr6.4:46457236-46457255 | MS.gene062645:CDS | 35.0% | |
| ! | ACCCTCTTTTTGAATGAAAG+TGG | - | chr6.4:46459047-46459066 | None:intergenic | 35.0% |
| ! | GCCACTTTCATTCAAAAAGA+GGG | + | chr6.4:46459043-46459062 | MS.gene062645:intron | 35.0% |
| ! | TATAATGGGATCGACACTTA+TGG | + | chr6.4:46459811-46459830 | MS.gene062645:CDS | 35.0% |
| !! | ACCACAAGATGTTATTTCCT+TGG | + | chr6.4:46460048-46460067 | MS.gene062645:CDS | 35.0% |
| !! | CCACTTTTGCTTTGGATATT+TGG | + | chr6.4:46460154-46460173 | MS.gene062645:CDS | 35.0% |
| !! | TAAGTGTCGATCCCATTATA+AGG | - | chr6.4:46459811-46459830 | None:intergenic | 35.0% |
| !! | TGCCACTTTCATTCAAAAAG+AGG | + | chr6.4:46459042-46459061 | MS.gene062645:intron | 35.0% |
| !! | TTGACTCTGATTTTAGAGAG+AGG | + | chr6.4:46460085-46460104 | MS.gene062645:CDS | 35.0% |
| !!! | CTTGGTTTTATTGTGCTCTT+TGG | + | chr6.4:46460183-46460202 | MS.gene062645:CDS | 35.0% |
| !!! | GAGCCTTTTTCAACTACAAT+TGG | + | chr6.4:46457274-46457293 | MS.gene062645:CDS | 35.0% |
| AACCTATGTAAGTCTTGGTG+TGG | - | chr6.4:46458055-46458074 | None:intergenic | 40.0% | |
| AAGATTCAGGGTTCAAACTC+CGG | - | chr6.4:46457444-46457463 | None:intergenic | 40.0% | |
| ACTCGTGAACTTAACTCAGT+TGG | - | chr6.4:46457490-46457509 | None:intergenic | 40.0% | |
| AGGAACTACTTTGAACACTG+TGG | + | chr6.4:46460105-46460124 | MS.gene062645:CDS | 40.0% | |
| ATACTTCAGTGCCATAGCAA+TGG | - | chr6.4:46459237-46459256 | None:intergenic | 40.0% | |
| ATTATTAGACCTGAAGGCAG+GGG | - | chr6.4:46458080-46458099 | None:intergenic | 40.0% | |
| CAAATAATCAGGAGTCACCA+AGG | - | chr6.4:46460068-46460087 | None:intergenic | 40.0% | |
| CATCTTGTGGTGTGCATATA+AGG | - | chr6.4:46460039-46460058 | None:intergenic | 40.0% | |
| CCCTACATTATTGTGGTCAA+AGG | - | chr6.4:46459002-46459021 | None:intergenic | 40.0% | |
| GAACTACTTTGAACACTGTG+GGG | + | chr6.4:46460107-46460126 | MS.gene062645:CDS | 40.0% | |
| GAGCACAATAAAACCAAGAC+TGG | - | chr6.4:46460181-46460200 | None:intergenic | 40.0% | |
| GATTATTAGACCTGAAGGCA+GGG | - | chr6.4:46458081-46458100 | None:intergenic | 40.0% | |
| GGAACTACTTTGAACACTGT+GGG | + | chr6.4:46460106-46460125 | MS.gene062645:CDS | 40.0% | |
| GGATATAGTGACCGAAATGT+CGG | - | chr6.4:46457929-46457948 | None:intergenic | 40.0% | |
| GTAGAATATGGACTCCACTT+TGG | + | chr6.4:46459099-46459118 | MS.gene062645:intron | 40.0% | |
| TATGGTTGTGGCATAAGACT+AGG | + | chr6.4:46457248-46457267 | MS.gene062645:CDS | 40.0% | |
| TCTGCCACAGTCTTTCAATT+AGG | + | chr6.4:46459993-46460012 | MS.gene062645:CDS | 40.0% | |
| TGATTATTAGACCTGAAGGC+AGG | - | chr6.4:46458082-46458101 | None:intergenic | 40.0% | |
| TGCATATAAGGAGGCTTAGT+TGG | - | chr6.4:46460027-46460046 | None:intergenic | 40.0% | |
| TTGGATATTTGGTCCAGTCT+TGG | + | chr6.4:46460165-46460184 | MS.gene062645:CDS | 40.0% | |
| ! | ACGACAACTTTTGTCGTGTA+AGG | - | chr6.4:46458626-46458645 | None:intergenic | 40.0% |
| ! | ATGCTCATGCTAGACGATTT+TGG | + | chr6.4:46457302-46457321 | MS.gene062645:CDS | 40.0% |
| ! | TGCTCATGCTAGACGATTTT+GGG | + | chr6.4:46457303-46457322 | MS.gene062645:CDS | 40.0% |
| !! | ACATATTTTTCGATGGTGGC+CGG | + | chr6.4:46457422-46457441 | MS.gene062645:intron | 40.0% |
| !! | ATGCAATGGTATGGTGTCAT+TGG | - | chr6.4:46459139-46459158 | None:intergenic | 40.0% |
| AATCCTGACCGTTGATGTGT+GGG | - | chr6.4:46459193-46459212 | None:intergenic | 45.0% | |
| AGCCACACCAAGACTTACAT+AGG | + | chr6.4:46458050-46458069 | MS.gene062645:intron | 45.0% | |
| AGGTACCAAAGCAAAGCCTA+GGG | - | chr6.4:46458982-46459001 | None:intergenic | 45.0% | |
| CAAACGGCCCTACATTATTG+TGG | - | chr6.4:46459009-46459028 | None:intergenic | 45.0% | |
| CACTCCCACAAACAATGTCA+AGG | - | chr6.4:46460231-46460250 | None:intergenic | 45.0% | |
| CCATTGCCATTGTACCCTAT+AGG | - | chr6.4:46459672-46459691 | None:intergenic | 45.0% | |
| CCTATAGGGTACAATGGCAA+TGG | + | chr6.4:46459669-46459688 | MS.gene062645:intron | 45.0% | |
| CTTGACATTGTTTGTGGGAG+TGG | + | chr6.4:46460229-46460248 | MS.gene062645:CDS | 45.0% | |
| CTTGTGGTGTGCATATAAGG+AGG | - | chr6.4:46460036-46460055 | None:intergenic | 45.0% | |
| CTTTGAACACTGTGGGGAAT+AGG | + | chr6.4:46460113-46460132 | MS.gene062645:CDS | 45.0% | |
| GGGCAAACCTATGTAAGTCT+TGG | - | chr6.4:46458060-46458079 | None:intergenic | 45.0% | |
| TACATAGGCGACCGACATTT+CGG | + | chr6.4:46457915-46457934 | MS.gene062645:intron | 45.0% | |
| TGCCATTAATGGCACCAAAG+TGG | - | chr6.4:46459116-46459135 | None:intergenic | 45.0% | |
| TGTGTGATGTGTGTGTGTGA+TGG | - | chr6.4:46459164-46459183 | None:intergenic | 45.0% | |
| TTGGGTTCCTACCATGTTGA+AGG | + | chr6.4:46457321-46457340 | MS.gene062645:CDS | 45.0% | |
| TTTCTAGATCCGTCTCTGTC+TGG | - | chr6.4:46457775-46457794 | None:intergenic | 45.0% | |
| ! | AAGGTACCAAAGCAAAGCCT+AGG | - | chr6.4:46458983-46459002 | None:intergenic | 45.0% |
| ! | GTGATGGAGATGCAATGGTA+TGG | - | chr6.4:46459148-46459167 | None:intergenic | 45.0% |
| ! | TGTGTGTGATGGAGATGCAA+TGG | - | chr6.4:46459153-46459172 | None:intergenic | 45.0% |
| !! | AACGGTCAGGATTGGTTCTA+TGG | + | chr6.4:46459200-46459219 | MS.gene062645:intron | 45.0% |
| !! | CTCCACTTTGGTGCCATTAA+TGG | + | chr6.4:46459111-46459130 | MS.gene062645:intron | 45.0% |
| !! | CTGCTCTTCCACTTTTGCTT+TGG | + | chr6.4:46460146-46460165 | MS.gene062645:CDS | 45.0% |
| !! | GATTGGTTCTATGGCACCAA+TGG | + | chr6.4:46459209-46459228 | MS.gene062645:intron | 45.0% |
| !! | GGTGTCATTGGTGCCATTAA+TGG | - | chr6.4:46459127-46459146 | None:intergenic | 45.0% |
| !! | ATATAGAAATAAAATAAAAT+TGG | - | chr6.4:46459559-46459578 | None:intergenic | 5.0% |
| !!! | TTCTATTTTTTAATAAATTA+TGG | + | chr6.4:46458018-46458037 | MS.gene062645:intron | 5.0% |
| AGCACGACTCACACACAACA+AGG | + | chr6.4:46458518-46458537 | MS.gene062645:intron | 50.0% | |
| ATCCTGACCGTTGATGTGTG+GGG | - | chr6.4:46459192-46459211 | None:intergenic | 50.0% | |
| CAATCCTGACCGTTGATGTG+TGG | - | chr6.4:46459194-46459213 | None:intergenic | 50.0% | |
| CACACATCAACGGTCAGGAT+TGG | + | chr6.4:46459192-46459211 | MS.gene062645:intron | 50.0% | |
| CACACATCCCCACACATCAA+CGG | + | chr6.4:46459182-46459201 | MS.gene062645:intron | 50.0% | |
| CACCAATGGCACCATTGCTA+TGG | + | chr6.4:46459223-46459242 | MS.gene062645:intron | 50.0% | |
| CCTCTTGACGACGTTCTCTA+CGG | + | chr6.4:46459902-46459921 | MS.gene062645:CDS | 50.0% | |
| GGATTCCCTAGGCTTTGCTT+TGG | + | chr6.4:46458974-46458993 | MS.gene062645:intron | 50.0% | |
| ! | AGGTGGAGTAGCTTGAGTTG+TGG | - | chr6.4:46457683-46457702 | None:intergenic | 50.0% |
| !! | TGCCATAGCAATGGTGCCAT+TGG | - | chr6.4:46459228-46459247 | None:intergenic | 50.0% |
| AGTCAGCCTCCAGACAGAGA+CGG | + | chr6.4:46457763-46457782 | MS.gene062645:intron | 55.0% | |
| ATAGGTTTGCCCCTGCCTTC+AGG | + | chr6.4:46458068-46458087 | MS.gene062645:intron | 55.0% | |
| ATCCCCACACATCAACGGTC+AGG | + | chr6.4:46459187-46459206 | MS.gene062645:intron | 55.0% | |
| CCGTAGAGAACGTCGTCAAG+AGG | - | chr6.4:46459905-46459924 | None:intergenic | 55.0% | |
| CGGTGCTCACGGCGAATTTA+TGG | + | chr6.4:46459922-46459941 | MS.gene062645:CDS | 55.0% | |
| CTAGATCCGTCTCTGTCTGG+AGG | - | chr6.4:46457772-46457791 | None:intergenic | 55.0% | |
| GACGTTCTCTACGGTGCTCA+CGG | + | chr6.4:46459911-46459930 | MS.gene062645:CDS | 55.0% | |
| TCTCTGTCTGGAGGCTGACT+AGG | - | chr6.4:46457763-46457782 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 46457175 | 46460294 | 46457175 | ID=MS.gene062645 |
| chr6.4 | mRNA | 46457175 | 46460294 | 46457175 | ID=MS.gene062645.t1;Parent=MS.gene062645 |
| chr6.4 | exon | 46457175 | 46457342 | 46457175 | ID=MS.gene062645.t1.exon1;Parent=MS.gene062645.t1 |
| chr6.4 | CDS | 46457175 | 46457342 | 46457175 | ID=cds.MS.gene062645.t1;Parent=MS.gene062645.t1 |
| chr6.4 | exon | 46459764 | 46460294 | 46459764 | ID=MS.gene062645.t1.exon2;Parent=MS.gene062645.t1 |
| chr6.4 | CDS | 46459764 | 46460294 | 46459764 | ID=cds.MS.gene062645.t1;Parent=MS.gene062645.t1 |
| Gene Sequence |
| Protein sequence |
