AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062701


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062701.t1 MTR_1g022045 99.076 649 6 0 1 649 1 649 0.0 1322
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062701.t1 AT1G75140 57.014 663 225 16 1 649 1 617 0.0 691
MS.gene062701.t1 AT1G19370 54.795 657 237 16 1 649 1 605 0.0 660

Find 151 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGGGTCATTGGATTTA+AGG 0.156932 1.4:+2353053 MS.gene062701:CDS
TCTTGCCTTGCAAGCAATTA+AGG 0.160564 1.4:+2353273 MS.gene062701:CDS
GCTTATTGTTAACCCTAAAA+AGG 0.215485 1.4:+2353303 MS.gene062701:CDS
ATTTGCATCTGCTGTGAAAT+TGG 0.223785 1.4:+2352520 MS.gene062701:CDS
AACCCTTCATGATCCTTAAA+AGG 0.231418 1.4:-2352572 None:intergenic
TTGAATTCACCTTTATAAAT+AGG 0.254344 1.4:-2353550 None:intergenic
GAATGTTGATACATAGAGTT+TGG 0.278494 1.4:+2352768 MS.gene062701:CDS
CGATACTAGTGGGAAGATTA+AGG 0.281011 1.4:+2352934 MS.gene062701:CDS
TGTAAGTGCTTCCTTCTTCT+TGG 0.283846 1.4:-2353641 None:intergenic
ACATGCCATCTCTTCGTTTA+GGG 0.284583 1.4:-2353975 None:intergenic
CTCCGACCCTGCTCGAAAAT+CGG 0.286064 1.4:-2353914 None:intergenic
GTTGTAACTGGTCATGAAAA+TGG 0.297865 1.4:+2352743 MS.gene062701:CDS
TCCAATCTACCTATTTATAA+AGG 0.304783 1.4:+2353541 MS.gene062701:CDS
GATTGTATTGAACATGATTC+AGG 0.304864 1.4:-2352170 None:intergenic
TTTATTGGATTCACCTATTA+CGG 0.311308 1.4:+2352679 MS.gene062701:CDS
GAACATGATTCAGGGCTTAA+AGG 0.316444 1.4:-2352161 None:intergenic
AAGTAGGTTTACTCAGATAA+AGG 0.325958 1.4:+2352361 MS.gene062701:CDS
AATGAGAGCTTTGTTGTAAC+TGG 0.327015 1.4:+2352731 MS.gene062701:CDS
AACATGCCATCTCTTCGTTT+AGG 0.327521 1.4:-2353976 None:intergenic
TACGAAACCATCGCCGTAAT+AGG 0.332437 1.4:-2352692 None:intergenic
ACCTTTATAAATAGGTAGAT+TGG 0.335847 1.4:-2353542 None:intergenic
GGTTGAGTTCGATACTTTAT+TGG 0.339185 1.4:+2352664 MS.gene062701:CDS
CTCTGAGAGCTCCACTTCTA+AGG 0.342609 1.4:-2353780 None:intergenic
GAATCATCCAACCCCAAGTT+TGG 0.344833 1.4:+2353423 MS.gene062701:CDS
TAAATATAGGGCATCAACTA+TGG 0.349327 1.4:+2353939 MS.gene062701:CDS
AAAATTATCACTATTTGCTT+TGG 0.351578 1.4:-2352222 None:intergenic
TCCCTTGGCATCATCTAGTT+CGG 0.356192 1.4:+2353705 MS.gene062701:CDS
TGAAATCTCTCTGACCAAAA+AGG 0.356568 1.4:-2352497 None:intergenic
CTTGCTTCGTCATCCAAACT+TGG 0.358616 1.4:-2353436 None:intergenic
AACTTGGGGTTGGATGATTC+AGG 0.362507 1.4:-2353420 None:intergenic
ATCAGCATCTGGTGCTCCCT+TGG 0.379867 1.4:+2353690 MS.gene062701:CDS
CTTGCCTTGCAAGCAATTAA+GGG 0.383135 1.4:+2353274 MS.gene062701:CDS
TCCGACCCTGCTCGAAAATC+GGG 0.383603 1.4:-2353913 None:intergenic
CGAAGAGATGGCATGTTTGT+AGG 0.385532 1.4:+2353982 MS.gene062701:CDS
CTCCTCATTATGTGAGAATC+GGG 0.386713 1.4:+2353347 MS.gene062701:CDS
CTTGTTATTGTTGGCCTTGG+AGG 0.394015 1.4:+2353496 MS.gene062701:CDS
CGTGAAAAGCTTGTTATTGT+TGG 0.397360 1.4:+2353487 MS.gene062701:CDS
AGAAACTGGTGCAGGGTCAT+TGG 0.398132 1.4:+2353045 MS.gene062701:CDS
CCCTTGGCATCATCTAGTTC+GGG 0.401741 1.4:+2353706 MS.gene062701:CDS
TGCAGGGTCATTGGATTTAA+GGG 0.401947 1.4:+2353054 MS.gene062701:CDS
TCTCCTCATTATGTGAGAAT+CGG 0.413688 1.4:+2353346 MS.gene062701:CDS
AGTTGAAGATGTAGAATATG+AGG 0.417788 1.4:+2352421 MS.gene062701:CDS
CAGGGTCGGAGATTAAATAT+AGG 0.418410 1.4:+2353926 MS.gene062701:CDS
TATGAGGGGAAAGCTCAAAA+TGG 0.424385 1.4:+2352437 MS.gene062701:CDS
TTGCTTCGTCATCCAAACTT+GGG 0.426551 1.4:-2353435 None:intergenic
GATCCCTTGGCATCAGCATC+TGG 0.428564 1.4:+2353679 MS.gene062701:CDS
TCAATGGCGGCATCACATAA+AGG 0.434001 1.4:+2352080 None:intergenic
GTAGGAGAGCCATACCTTCT+CGG 0.439682 1.4:-2353814 None:intergenic
GCTGATGCCAAGGGATCATC+TGG 0.441468 1.4:-2353673 None:intergenic
ACCGTAAGCCTTGGAGCGTT+CGG 0.443128 1.4:-2353149 None:intergenic
AACATGATTCAGGGCTTAAA+GGG 0.444442 1.4:-2352160 None:intergenic
AAGCTTGTTATTGTTGGCCT+TGG 0.452927 1.4:+2353493 MS.gene062701:CDS
GAGAATCGGGGTGCCTCGTC+CGG 0.453539 1.4:+2353360 MS.gene062701:CDS
AGGGATCGAGCGGAGAGGAT+TGG 0.453805 1.4:+2352792 MS.gene062701:CDS
GAGCGGAGAGGATTGGAGTT+CGG 0.454464 1.4:+2352799 MS.gene062701:CDS
TGGTTTGGCTATAACTTTGT+TGG 0.455300 1.4:+2352871 MS.gene062701:CDS
TTGTAACTGGTCATGAAAAT+GGG 0.458526 1.4:+2352744 MS.gene062701:CDS
AGTAGGTTTACTCAGATAAA+GGG 0.466339 1.4:+2352362 MS.gene062701:CDS
GCTCCAGCAGGAAACCTTGT+AGG 0.467929 1.4:-2353832 None:intergenic
ATGTAATGAACTTCAAATGC+AGG 0.472022 1.4:+2353215 MS.gene062701:CDS
TGTGGCAGTTAGCGACGAAA+AGG 0.473396 1.4:+2352604 MS.gene062701:CDS
AATGTTGATACATAGAGTTT+GGG 0.473684 1.4:+2352769 MS.gene062701:CDS
TTAATTTATGTCTTGTTGCT+TGG 0.474510 1.4:+2353190 MS.gene062701:CDS
GTTATTGTTGGCCTTGGAGG+TGG 0.480940 1.4:+2353499 MS.gene062701:CDS
ACCGAACGCTCCAAGGCTTA+CGG 0.482451 1.4:+2353148 MS.gene062701:CDS
AAATCGGGATCAACCGAAGC+TGG 0.485044 1.4:-2353898 None:intergenic
TAGGTACTTGCTGCTCCAGC+AGG 0.488751 1.4:-2353844 None:intergenic
CCATACCTTCTCGGTGGTGG+TGG 0.491401 1.4:-2353805 None:intergenic
AAAAGTACGAAGAACAATAC+AGG 0.493218 1.4:-2353592 None:intergenic
GTTGAAGATGTAGAATATGA+GGG 0.497093 1.4:+2352422 MS.gene062701:CDS
ATCAGCAGAACCAAGTCTAT+AGG 0.499473 1.4:-2353863 None:intergenic
GGCCTTGGAGGTGGTTATGT+TGG 0.500374 1.4:+2353508 MS.gene062701:CDS
GAGCCATACCTTCTCGGTGG+TGG 0.500633 1.4:-2353808 None:intergenic
ATTGTATTGAACATGATTCA+GGG 0.502180 1.4:-2352169 None:intergenic
AAGAACTTCTGCCGATGTCA+TGG 0.502840 1.4:+2353756 MS.gene062701:CDS
TGAAAATCACGAGAATGGTT+TGG 0.504411 1.4:+2352856 MS.gene062701:CDS
GGATCAACCGAAGCTGGCCT+AGG 0.505610 1.4:-2353892 None:intergenic
AGAAGGAAGCACTTACATCA+TGG 0.505670 1.4:+2353647 MS.gene062701:CDS
TTTGAGAAATGGTGATGTGT+TGG 0.505711 1.4:+2352643 MS.gene062701:CDS
ATATCCCTTAATTGCTTGCA+AGG 0.508373 1.4:-2353278 None:intergenic
CGATGCCACCGAACGCTCCA+AGG 0.508984 1.4:+2353141 MS.gene062701:CDS
AGGGTCGGAGATTAAATATA+GGG 0.509764 1.4:+2353927 MS.gene062701:CDS
TCACAATCCTAGGCCAGCTT+CGG 0.513487 1.4:+2353885 MS.gene062701:CDS
CCACCACCACCGAGAAGGTA+TGG 0.519438 1.4:+2353805 MS.gene062701:CDS
CTTAATCTTCCCACTAGTAT+CGG 0.520642 1.4:-2352933 None:intergenic
GTGAATTCAATACCATGCTA+TGG 0.523841 1.4:+2353563 MS.gene062701:CDS
GTTCTGTCACTCCGAGTGCT+AGG 0.526531 1.4:+2352984 MS.gene062701:CDS
TGACGTAAAACCGTAAGCCT+TGG 0.530165 1.4:-2353158 None:intergenic
TCGTCATCCAAACTTGGGGT+TGG 0.534310 1.4:-2353430 None:intergenic
ATGGGGACCAGATGATCCCT+TGG 0.536773 1.4:+2353666 MS.gene062701:CDS
TGCTTCGTCATCCAAACTTG+GGG 0.537547 1.4:-2353434 None:intergenic
TCTCCTACAAGGTTTCCTGC+TGG 0.544977 1.4:+2353829 MS.gene062701:CDS
AGCACCAGATGCTGATGCCA+AGG 0.549033 1.4:-2353683 None:intergenic
TCACCTGAAAATCACGAGAA+TGG 0.550569 1.4:+2352851 MS.gene062701:CDS
TCAATGCTTGAGGAGAAAAC+CGG 0.551859 1.4:-2353379 None:intergenic
GAAGGAAGCACTTACATCAT+GGG 0.552127 1.4:+2353648 MS.gene062701:CDS
GAAGGTATGGCTCTCCTACA+AGG 0.552207 1.4:+2353818 MS.gene062701:CDS
ATCAAAACAACCACAGCAAG+AGG 0.553985 1.4:+2352316 MS.gene062701:CDS
TTCAGAAACAGATTCATCGT+TGG 0.554856 1.4:-2352198 None:intergenic
GGATTCACCTATTACGGCGA+TGG 0.555523 1.4:+2352685 MS.gene062701:CDS
CGAAAACATAACCTCTAGCA+AGG 0.557604 1.4:-2353120 None:intergenic
CATAACCTCTAGCAAGGGAA+TGG 0.558567 1.4:-2353114 None:intergenic
GCATCAACTATGGATCCTCC+TGG 0.559135 1.4:+2353949 MS.gene062701:CDS
TCAAAATGGTGAGAGAGCTA+AGG 0.560407 1.4:+2352451 MS.gene062701:CDS
CTTGAGGAGAAAACCGGACG+AGG 0.564181 1.4:-2353373 None:intergenic
AAAACTAACGGCCTAGCACT+CGG 0.565802 1.4:-2352995 None:intergenic
GTTCTGCTGATCACAATCCT+AGG 0.568302 1.4:+2353875 MS.gene062701:CDS
CAAAATGGTGAGAGAGCTAA+GGG 0.568442 1.4:+2352452 MS.gene062701:CDS
ATAAAGGGTGATGTTGATGA+TGG 0.570149 1.4:+2352377 MS.gene062701:CDS
GGTTGGATGATTCAGGAATG+AGG 0.577066 1.4:-2353413 None:intergenic
ACCCCGATTCTCACATAATG+AGG 0.578251 1.4:-2353349 None:intergenic
GTTGATACATAGAGTTTGGG+AGG 0.579213 1.4:+2352772 MS.gene062701:CDS
GTGGCAGTTAGCGACGAAAA+GGG 0.579574 1.4:+2352605 MS.gene062701:CDS
GAAACAGATTCATCGTTGGA+TGG 0.583904 1.4:-2352194 None:intergenic
TGAAGGGTTAAGTAAGTATG+TGG 0.586429 1.4:+2352586 MS.gene062701:CDS
CTTTGCTTCAAGAAAACTAA+CGG 0.587679 1.4:-2353007 None:intergenic
TTGAACCATTCCCTTGCTAG+AGG 0.588040 1.4:+2353109 MS.gene062701:CDS
ACCCGAACTAGATGATGCCA+AGG 0.588300 1.4:-2353707 None:intergenic
ACCACAGCAAGAGGTTCCTA+AGG 0.591540 1.4:+2352325 MS.gene062701:CDS
TTAATTGCTTGCAAGGCAAG+AGG 0.592530 1.4:-2353271 None:intergenic
ACCTTAGGAACCTCTTGCTG+TGG 0.596633 1.4:-2352326 None:intergenic
ATTCTATCAGCCGATACTAG+TGG 0.596692 1.4:+2352923 MS.gene062701:CDS
TTCTATCAGCCGATACTAGT+GGG 0.601289 1.4:+2352924 MS.gene062701:CDS
TCTCTTCGTTTAGGGAAACC+AGG 0.603540 1.4:-2353967 None:intergenic
GCACCAGATGCTGATGCCAA+GGG 0.603889 1.4:-2353682 None:intergenic
ATTAGAGAATCTGAATGCGA+AGG 0.604471 1.4:+2353085 MS.gene062701:CDS
GGTTTCCCTAAACGAAGAGA+TGG 0.605902 1.4:+2353970 MS.gene062701:CDS
GCAGGGTCATTGGATTTAAG+GGG 0.607326 1.4:+2353055 MS.gene062701:CDS
GATGTCATGGACCTTAGAAG+TGG 0.608463 1.4:+2353769 MS.gene062701:CDS
GCAGCAAGTACCTATAGACT+TGG 0.614298 1.4:+2353853 MS.gene062701:CDS
GAGGTCCACCACCACCGAGA+AGG 0.615042 1.4:+2353800 MS.gene062701:CDS
GTAAGCCTTGGAGCGTTCGG+TGG 0.615723 1.4:-2353146 None:intergenic
TCTAAGCTCATCAATGCTTG+AGG 0.624847 1.4:-2353389 None:intergenic
ACTTCTAAGGTCCATGACAT+CGG 0.628592 1.4:-2353767 None:intergenic
AGAGTTTGGGAGGGATCGAG+CGG 0.630495 1.4:+2352782 MS.gene062701:CDS
TTCCAACATAACCACCTCCA+AGG 0.632050 1.4:-2353510 None:intergenic
TGTAATGAACTTCAAATGCA+GGG 0.635592 1.4:+2353216 MS.gene062701:CDS
TCACGGTCACTAGCTATCAA+CGG 0.636430 1.4:-2353469 None:intergenic
GAAAACATAACCTCTAGCAA+GGG 0.636680 1.4:-2353119 None:intergenic
TTGATACATAGAGTTTGGGA+GGG 0.638448 1.4:+2352773 MS.gene062701:CDS
TTGAAGATGTAGAATATGAG+GGG 0.651957 1.4:+2352423 MS.gene062701:CDS
TACAGGACTAGTCCATAGCA+TGG 0.656922 1.4:-2353575 None:intergenic
AAGGAAGCACTTACATCATG+GGG 0.662135 1.4:+2353649 MS.gene062701:CDS
CTTAGAAGTGGAGCTCTCAG+AGG 0.667229 1.4:+2353781 MS.gene062701:CDS
TGTAACTGGTCATGAAAATG+GGG 0.671239 1.4:+2352745 MS.gene062701:CDS
TTGGGAGGGATCGAGCGGAG+AGG 0.684923 1.4:+2352787 MS.gene062701:CDS
TCCTCATTATGTGAGAATCG+GGG 0.695613 1.4:+2353348 MS.gene062701:CDS
CCCGAACTAGATGATGCCAA+GGG 0.697441 1.4:-2353706 None:intergenic
GGAGAGCCATACCTTCTCGG+TGG 0.704913 1.4:-2353811 None:intergenic
CTTCGTTTAGGGAAACCAGG+AGG 0.758900 1.4:-2353964 None:intergenic
GTAACTGGTCATGAAAATGG+GGG 0.767450 1.4:+2352746 MS.gene062701:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTATCACTATTTGCTT+TGG - chr1.4:2352225-2352244 None:intergenic 20.0%
!! ATACAAGAAAAAGTTTGAAA+TGG + chr1.4:2353243-2353262 MS.gene062701:CDS 20.0%
!! TTGAATTCACCTTTATAAAT+AGG - chr1.4:2353553-2353572 None:intergenic 20.0%
!!! TAAACACAAAAACCTTTTTA+GGG - chr1.4:2353318-2353337 None:intergenic 20.0%
!!! TATAAATGTTTTGCCTTTTA+AGG + chr1.4:2352559-2352578 MS.gene062701:CDS 20.0%
!!! TTAAACACAAAAACCTTTTT+AGG - chr1.4:2353319-2353338 None:intergenic 20.0%
! AATGTTGATACATAGAGTTT+GGG + chr1.4:2352769-2352788 MS.gene062701:CDS 25.0%
! ACCTTTATAAATAGGTAGAT+TGG - chr1.4:2353545-2353564 None:intergenic 25.0%
! ATTGTATTGAACATGATTCA+GGG - chr1.4:2352172-2352191 None:intergenic 25.0%
! TCCAATCTACCTATTTATAA+AGG + chr1.4:2353541-2353560 MS.gene062701:CDS 25.0%
! TTTATTGGATTCACCTATTA+CGG + chr1.4:2352679-2352698 MS.gene062701:CDS 25.0%
!! CAAGATTTTTATCTTCTGTT+TGG + chr1.4:2352103-2352122 MS.gene062701:CDS 25.0%
!! TTAATTTATGTCTTGTTGCT+TGG + chr1.4:2353190-2353209 MS.gene062701:CDS 25.0%
!!! GTTTATGTGTTTTTGAGAAA+TGG + chr1.4:2352632-2352651 MS.gene062701:CDS 25.0%
AAGTAGGTTTACTCAGATAA+AGG + chr1.4:2352361-2352380 MS.gene062701:CDS 30.0%
AGGTTGTTCAAGAAAAAAGT+AGG + chr1.4:2352345-2352364 MS.gene062701:CDS 30.0%
AGTAGGTTTACTCAGATAAA+GGG + chr1.4:2352362-2352381 MS.gene062701:CDS 30.0%
AGTTGAAGATGTAGAATATG+AGG + chr1.4:2352421-2352440 MS.gene062701:CDS 30.0%
ATGTAATGAACTTCAAATGC+AGG + chr1.4:2353215-2353234 MS.gene062701:CDS 30.0%
CTTTGCTTCAAGAAAACTAA+CGG - chr1.4:2353010-2353029 None:intergenic 30.0%
GAATGTTGATACATAGAGTT+TGG + chr1.4:2352768-2352787 MS.gene062701:CDS 30.0%
GATTGTATTGAACATGATTC+AGG - chr1.4:2352173-2352192 None:intergenic 30.0%
GCTTATTGTTAACCCTAAAA+AGG + chr1.4:2353303-2353322 MS.gene062701:CDS 30.0%
GTTGAAGATGTAGAATATGA+GGG + chr1.4:2352422-2352441 MS.gene062701:CDS 30.0%
TGTAATGAACTTCAAATGCA+GGG + chr1.4:2353216-2353235 MS.gene062701:CDS 30.0%
TTGAAGATGTAGAATATGAG+GGG + chr1.4:2352423-2352442 MS.gene062701:CDS 30.0%
TTGTAACTGGTCATGAAAAT+GGG + chr1.4:2352744-2352763 MS.gene062701:CDS 30.0%
! AAAAGTACGAAGAACAATAC+AGG - chr1.4:2353595-2353614 None:intergenic 30.0%
! CAACAATAACAAGCTTTTCA+CGG - chr1.4:2353489-2353508 None:intergenic 30.0%
! TAAATATAGGGCATCAACTA+TGG + chr1.4:2353939-2353958 MS.gene062701:CDS 30.0%
! TCGGTTTTTATGGAAAATGT+CGG + chr1.4:2352818-2352837 MS.gene062701:CDS 30.0%
! TGGGAAGATTAAGGTTTTTA+AGG + chr1.4:2352943-2352962 MS.gene062701:CDS 30.0%
! TGTTGGAAGTTCATTTTGTA+GGG + chr1.4:2352888-2352907 MS.gene062701:CDS 30.0%
! TTCTTCGTACTTTTCCTATT+CGG + chr1.4:2353601-2353620 MS.gene062701:CDS 30.0%
! TTGTTGGAAGTTCATTTTGT+AGG + chr1.4:2352887-2352906 MS.gene062701:CDS 30.0%
!! CTTATGTTTTTGACAGAAAC+TGG + chr1.4:2353031-2353050 MS.gene062701:CDS 30.0%
!!! CTTTTTTCTTGAACAACCTT+AGG - chr1.4:2352344-2352363 None:intergenic 30.0%
AACATGATTCAGGGCTTAAA+GGG - chr1.4:2352163-2352182 None:intergenic 35.0%
AACCCTTCATGATCCTTAAA+AGG - chr1.4:2352575-2352594 None:intergenic 35.0%
AGGGTCGGAGATTAAATATA+GGG + chr1.4:2353927-2353946 MS.gene062701:CDS 35.0%
ATATCCCTTAATTGCTTGCA+AGG - chr1.4:2353281-2353300 None:intergenic 35.0%
ATTAGAGAATCTGAATGCGA+AGG + chr1.4:2353085-2353104 MS.gene062701:CDS 35.0%
ATTTGCATCTGCTGTGAAAT+TGG + chr1.4:2352520-2352539 MS.gene062701:CDS 35.0%
CTTAATCTTCCCACTAGTAT+CGG - chr1.4:2352936-2352955 None:intergenic 35.0%
GAAAACATAACCTCTAGCAA+GGG - chr1.4:2353122-2353141 None:intergenic 35.0%
GGTTGAGTTCGATACTTTAT+TGG + chr1.4:2352664-2352683 MS.gene062701:CDS 35.0%
GTGAATTCAATACCATGCTA+TGG + chr1.4:2353563-2353582 MS.gene062701:CDS 35.0%
GTTGTAACTGGTCATGAAAA+TGG + chr1.4:2352743-2352762 MS.gene062701:CDS 35.0%
TCTCCTCATTATGTGAGAAT+CGG + chr1.4:2353346-2353365 MS.gene062701:CDS 35.0%
TGAAAATCACGAGAATGGTT+TGG + chr1.4:2352856-2352875 MS.gene062701:CDS 35.0%
TGAAATCTCTCTGACCAAAA+AGG - chr1.4:2352500-2352519 None:intergenic 35.0%
TGAAGGGTTAAGTAAGTATG+TGG + chr1.4:2352586-2352605 MS.gene062701:CDS 35.0%
TGTAACTGGTCATGAAAATG+GGG + chr1.4:2352745-2352764 MS.gene062701:CDS 35.0%
TTCAGAAACAGATTCATCGT+TGG - chr1.4:2352201-2352220 None:intergenic 35.0%
TTGATACATAGAGTTTGGGA+GGG + chr1.4:2352773-2352792 MS.gene062701:CDS 35.0%
! AAACCATTCTCGTGATTTTC+AGG - chr1.4:2352857-2352876 None:intergenic 35.0%
! AAGGAAAGCAGTGTGTTTTA+TGG + chr1.4:2352962-2352981 MS.gene062701:CDS 35.0%
! ATAAAGGGTGATGTTGATGA+TGG + chr1.4:2352377-2352396 MS.gene062701:CDS 35.0%
! TGACCAAAAAGGAGTATACT+TGG - chr1.4:2352489-2352508 None:intergenic 35.0%
! TGACCAAGTATACTCCTTTT+TGG + chr1.4:2352483-2352502 MS.gene062701:CDS 35.0%
! TGGTTTGGCTATAACTTTGT+TGG + chr1.4:2352871-2352890 MS.gene062701:CDS 35.0%
! TTTGAGAAATGGTGATGTGT+TGG + chr1.4:2352643-2352662 MS.gene062701:CDS 35.0%
!! AATGAGAGCTTTGTTGTAAC+TGG + chr1.4:2352731-2352750 MS.gene062701:CDS 35.0%
!! CGTGAAAAGCTTGTTATTGT+TGG + chr1.4:2353487-2353506 MS.gene062701:CDS 35.0%
!! TGCCTTTTAAGGATCATGAA+GGG + chr1.4:2352570-2352589 MS.gene062701:CDS 35.0%
!! TTGCCTTTTAAGGATCATGA+AGG + chr1.4:2352569-2352588 MS.gene062701:CDS 35.0%
!!! CGTTAGTTTTCTTGAAGCAA+AGG + chr1.4:2353008-2353027 MS.gene062701:CDS 35.0%
AACATGCCATCTCTTCGTTT+AGG - chr1.4:2353979-2353998 None:intergenic 40.0%
ACATGCCATCTCTTCGTTTA+GGG - chr1.4:2353978-2353997 None:intergenic 40.0%
ATCAAAACAACCACAGCAAG+AGG + chr1.4:2352316-2352335 MS.gene062701:CDS 40.0%
ATCAGCAGAACCAAGTCTAT+AGG - chr1.4:2353866-2353885 None:intergenic 40.0%
ATTCTATCAGCCGATACTAG+TGG + chr1.4:2352923-2352942 MS.gene062701:CDS 40.0%
CAAAATGGTGAGAGAGCTAA+GGG + chr1.4:2352452-2352471 MS.gene062701:CDS 40.0%
CAGGGTCGGAGATTAAATAT+AGG + chr1.4:2353926-2353945 MS.gene062701:CDS 40.0%
CGAAAACATAACCTCTAGCA+AGG - chr1.4:2353123-2353142 None:intergenic 40.0%
CGATACTAGTGGGAAGATTA+AGG + chr1.4:2352934-2352953 MS.gene062701:CDS 40.0%
CTCCTCATTATGTGAGAATC+GGG + chr1.4:2353347-2353366 MS.gene062701:CDS 40.0%
CTTGCCTTGCAAGCAATTAA+GGG + chr1.4:2353274-2353293 MS.gene062701:CDS 40.0%
GAAACAGATTCATCGTTGGA+TGG - chr1.4:2352197-2352216 None:intergenic 40.0%
GAACATGATTCAGGGCTTAA+AGG - chr1.4:2352164-2352183 None:intergenic 40.0%
GTAACTGGTCATGAAAATGG+GGG + chr1.4:2352746-2352765 MS.gene062701:CDS 40.0%
GTTGATACATAGAGTTTGGG+AGG + chr1.4:2352772-2352791 MS.gene062701:CDS 40.0%
TATGAGGGGAAAGCTCAAAA+TGG + chr1.4:2352437-2352456 MS.gene062701:CDS 40.0%
TCAAAATGGTGAGAGAGCTA+AGG + chr1.4:2352451-2352470 MS.gene062701:CDS 40.0%
TCAATGCTTGAGGAGAAAAC+CGG - chr1.4:2353382-2353401 None:intergenic 40.0%
TCACCTGAAAATCACGAGAA+TGG + chr1.4:2352851-2352870 MS.gene062701:CDS 40.0%
TCCTCATTATGTGAGAATCG+GGG + chr1.4:2353348-2353367 MS.gene062701:CDS 40.0%
TCTAAGCTCATCAATGCTTG+AGG - chr1.4:2353392-2353411 None:intergenic 40.0%
TCTTGCCTTGCAAGCAATTA+AGG + chr1.4:2353273-2353292 MS.gene062701:CDS 40.0%
TGCAGGGTCATTGGATTTAA+GGG + chr1.4:2353054-2353073 MS.gene062701:CDS 40.0%
TGTAAGTGCTTCCTTCTTCT+TGG - chr1.4:2353644-2353663 None:intergenic 40.0%
TTAATTGCTTGCAAGGCAAG+AGG - chr1.4:2353274-2353293 None:intergenic 40.0%
TTCTATCAGCCGATACTAGT+GGG + chr1.4:2352924-2352943 MS.gene062701:CDS 40.0%
TTGCTTCGTCATCCAAACTT+GGG - chr1.4:2353438-2353457 None:intergenic 40.0%
! GGATTGGAGTTCGGTTTTTA+TGG + chr1.4:2352808-2352827 MS.gene062701:CDS 40.0%
! TGGAAGTTCATTTTGTAGGG+AGG + chr1.4:2352891-2352910 MS.gene062701:CDS 40.0%
! TTTTGACAGAAACTGGTGCA+GGG + chr1.4:2353038-2353057 MS.gene062701:CDS 40.0%
! TTTTTGACAGAAACTGGTGC+AGG + chr1.4:2353037-2353056 MS.gene062701:CDS 40.0%
!! AAAAATGCCAAGCACCGAAT+AGG - chr1.4:2353618-2353637 None:intergenic 40.0%
!! AAGCTTGTTATTGTTGGCCT+TGG + chr1.4:2353493-2353512 MS.gene062701:CDS 40.0%
!! AAGGAAGCACTTACATCATG+GGG + chr1.4:2353649-2353668 MS.gene062701:CDS 40.0%
!! ACTTCTAAGGTCCATGACAT+CGG - chr1.4:2353770-2353789 None:intergenic 40.0%
!! AGAAGGAAGCACTTACATCA+TGG + chr1.4:2353647-2353666 MS.gene062701:CDS 40.0%
!! GAAGGAAGCACTTACATCAT+GGG + chr1.4:2353648-2353667 MS.gene062701:CDS 40.0%
!!! GCATTTTTTCGCCAAGAAGA+AGG + chr1.4:2353630-2353649 MS.gene062701:CDS 40.0%
!!! TACTTTTCCTATTCGGTGCT+TGG + chr1.4:2353608-2353627 MS.gene062701:CDS 40.0%
AAAACTAACGGCCTAGCACT+CGG - chr1.4:2352998-2353017 None:intergenic 45.0%
AACTTGGGGTTGGATGATTC+AGG - chr1.4:2353423-2353442 None:intergenic 45.0%
AAGAACTTCTGCCGATGTCA+TGG + chr1.4:2353756-2353775 MS.gene062701:CDS 45.0%
ACCCCGATTCTCACATAATG+AGG - chr1.4:2353352-2353371 None:intergenic 45.0%
CATAACCTCTAGCAAGGGAA+TGG - chr1.4:2353117-2353136 None:intergenic 45.0%
CGAAGAGATGGCATGTTTGT+AGG + chr1.4:2353982-2354001 MS.gene062701:CDS 45.0%
CTTGCTTCGTCATCCAAACT+TGG - chr1.4:2353439-2353458 None:intergenic 45.0%
GAATCATCCAACCCCAAGTT+TGG + chr1.4:2353423-2353442 MS.gene062701:CDS 45.0%
GATGTCATGGACCTTAGAAG+TGG + chr1.4:2353769-2353788 MS.gene062701:CDS 45.0%
GCAGCAAGTACCTATAGACT+TGG + chr1.4:2353853-2353872 MS.gene062701:CDS 45.0%
GCAGGGTCATTGGATTTAAG+GGG + chr1.4:2353055-2353074 MS.gene062701:CDS 45.0%
GGTTGGATGATTCAGGAATG+AGG - chr1.4:2353416-2353435 None:intergenic 45.0%
GGTTTCCCTAAACGAAGAGA+TGG + chr1.4:2353970-2353989 MS.gene062701:CDS 45.0%
GTGCAGGGTCATTGGATTTA+AGG + chr1.4:2353053-2353072 MS.gene062701:CDS 45.0%
GTTCTGCTGATCACAATCCT+AGG + chr1.4:2353875-2353894 MS.gene062701:CDS 45.0%
TACGAAACCATCGCCGTAAT+AGG - chr1.4:2352695-2352714 None:intergenic 45.0%
TCACGGTCACTAGCTATCAA+CGG - chr1.4:2353472-2353491 None:intergenic 45.0%
TCCCTTGGCATCATCTAGTT+CGG + chr1.4:2353705-2353724 MS.gene062701:CDS 45.0%
TCTCTTCGTTTAGGGAAACC+AGG - chr1.4:2353970-2353989 None:intergenic 45.0%
TGACGTAAAACCGTAAGCCT+TGG - chr1.4:2353161-2353180 None:intergenic 45.0%
TGCTTCGTCATCCAAACTTG+GGG - chr1.4:2353437-2353456 None:intergenic 45.0%
TTCCAACATAACCACCTCCA+AGG - chr1.4:2353513-2353532 None:intergenic 45.0%
TTGAACCATTCCCTTGCTAG+AGG + chr1.4:2353109-2353128 MS.gene062701:CDS 45.0%
! GCTTACGGTTTTACGTCAGA+TGG + chr1.4:2353163-2353182 MS.gene062701:CDS 45.0%
!! CTTGTTATTGTTGGCCTTGG+AGG + chr1.4:2353496-2353515 MS.gene062701:CDS 45.0%
!! TACAGGACTAGTCCATAGCA+TGG - chr1.4:2353578-2353597 None:intergenic 45.0%
!! TTGATCCCGATTTTCGAGCA+GGG + chr1.4:2353908-2353927 MS.gene062701:CDS 45.0%
AAATCGGGATCAACCGAAGC+TGG - chr1.4:2353901-2353920 None:intergenic 50.0%
ACCACAGCAAGAGGTTCCTA+AGG + chr1.4:2352325-2352344 MS.gene062701:CDS 50.0%
ACCCGAACTAGATGATGCCA+AGG - chr1.4:2353710-2353729 None:intergenic 50.0%
ACCTTAGGAACCTCTTGCTG+TGG - chr1.4:2352329-2352348 None:intergenic 50.0%
AGAAACTGGTGCAGGGTCAT+TGG + chr1.4:2353045-2353064 MS.gene062701:CDS 50.0%
CCCGAACTAGATGATGCCAA+GGG - chr1.4:2353709-2353728 None:intergenic 50.0%
CTTAGAAGTGGAGCTCTCAG+AGG + chr1.4:2353781-2353800 MS.gene062701:CDS 50.0%
CTTCGTTTAGGGAAACCAGG+AGG - chr1.4:2353967-2353986 None:intergenic 50.0%
GCATCAACTATGGATCCTCC+TGG + chr1.4:2353949-2353968 MS.gene062701:CDS 50.0%
GGATTCACCTATTACGGCGA+TGG + chr1.4:2352685-2352704 MS.gene062701:CDS 50.0%
GTAGGAGAGCCATACCTTCT+CGG - chr1.4:2353817-2353836 None:intergenic 50.0%
GTGGCAGTTAGCGACGAAAA+GGG + chr1.4:2352605-2352624 MS.gene062701:CDS 50.0%
TCACAATCCTAGGCCAGCTT+CGG + chr1.4:2353885-2353904 MS.gene062701:CDS 50.0%
TCGTCATCCAAACTTGGGGT+TGG - chr1.4:2353433-2353452 None:intergenic 50.0%
TCTCCTACAAGGTTTCCTGC+TGG + chr1.4:2353829-2353848 MS.gene062701:CDS 50.0%
TGTGGCAGTTAGCGACGAAA+AGG + chr1.4:2352604-2352623 MS.gene062701:CDS 50.0%
! CCCTTGGCATCATCTAGTTC+GGG + chr1.4:2353706-2353725 MS.gene062701:CDS 50.0%
! CTCTGAGAGCTCCACTTCTA+AGG - chr1.4:2353783-2353802 None:intergenic 50.0%
! GAAGGTATGGCTCTCCTACA+AGG + chr1.4:2353818-2353837 MS.gene062701:CDS 50.0%
!! GTTATTGTTGGCCTTGGAGG+TGG + chr1.4:2353499-2353518 MS.gene062701:CDS 50.0%
!! GTTGATCCCGATTTTCGAGC+AGG + chr1.4:2353907-2353926 MS.gene062701:CDS 50.0%
ACCGAACGCTCCAAGGCTTA+CGG + chr1.4:2353148-2353167 MS.gene062701:CDS 55.0%
AGAGTTTGGGAGGGATCGAG+CGG + chr1.4:2352782-2352801 MS.gene062701:CDS 55.0%
AGCACCAGATGCTGATGCCA+AGG - chr1.4:2353686-2353705 None:intergenic 55.0%
ATCAGCATCTGGTGCTCCCT+TGG + chr1.4:2353690-2353709 MS.gene062701:CDS 55.0%
ATGGGGACCAGATGATCCCT+TGG + chr1.4:2353666-2353685 MS.gene062701:CDS 55.0%
CTCCGACCCTGCTCGAAAAT+CGG - chr1.4:2353917-2353936 None:intergenic 55.0%
CTTGAGGAGAAAACCGGACG+AGG - chr1.4:2353376-2353395 None:intergenic 55.0%
GAGCGGAGAGGATTGGAGTT+CGG + chr1.4:2352799-2352818 MS.gene062701:CDS 55.0%
GATCCCTTGGCATCAGCATC+TGG + chr1.4:2353679-2353698 MS.gene062701:CDS 55.0%
GCACCAGATGCTGATGCCAA+GGG - chr1.4:2353685-2353704 None:intergenic 55.0%
GCTCCAGCAGGAAACCTTGT+AGG - chr1.4:2353835-2353854 None:intergenic 55.0%
GCTGATGCCAAGGGATCATC+TGG - chr1.4:2353676-2353695 None:intergenic 55.0%
GGCCTTGGAGGTGGTTATGT+TGG + chr1.4:2353508-2353527 MS.gene062701:CDS 55.0%
GTTCTGTCACTCCGAGTGCT+AGG + chr1.4:2352984-2353003 MS.gene062701:CDS 55.0%
TCCGACCCTGCTCGAAAATC+GGG - chr1.4:2353916-2353935 None:intergenic 55.0%
! ACCGTAAGCCTTGGAGCGTT+CGG - chr1.4:2353152-2353171 None:intergenic 55.0%
! TAGGTACTTGCTGCTCCAGC+AGG - chr1.4:2353847-2353866 None:intergenic 55.0%
!! TCCCGATTTTCGAGCAGGGT+CGG + chr1.4:2353912-2353931 MS.gene062701:CDS 55.0%
AGGGATCGAGCGGAGAGGAT+TGG + chr1.4:2352792-2352811 MS.gene062701:CDS 60.0%
CCACCACCACCGAGAAGGTA+TGG + chr1.4:2353805-2353824 MS.gene062701:CDS 60.0%
GAGCCATACCTTCTCGGTGG+TGG - chr1.4:2353811-2353830 None:intergenic 60.0%
GGAGAGCCATACCTTCTCGG+TGG - chr1.4:2353814-2353833 None:intergenic 60.0%
! CCATACCTTCTCGGTGGTGG+TGG - chr1.4:2353808-2353827 None:intergenic 60.0%
! GGATCAACCGAAGCTGGCCT+AGG - chr1.4:2353895-2353914 None:intergenic 60.0%
! GTAAGCCTTGGAGCGTTCGG+TGG - chr1.4:2353149-2353168 None:intergenic 60.0%
CGATGCCACCGAACGCTCCA+AGG + chr1.4:2353141-2353160 MS.gene062701:CDS 65.0%
GAGGTCCACCACCACCGAGA+AGG + chr1.4:2353800-2353819 MS.gene062701:CDS 65.0%
TTGGGAGGGATCGAGCGGAG+AGG + chr1.4:2352787-2352806 MS.gene062701:CDS 65.0%
! GAGAATCGGGGTGCCTCGTC+CGG + chr1.4:2353360-2353379 MS.gene062701:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 2352083 2354032 2352083 ID=MS.gene062701
chr1.4 mRNA 2352083 2354032 2352083 ID=MS.gene062701.t1;Parent=MS.gene062701
chr1.4 exon 2352083 2354032 2352083 ID=MS.gene062701.t1.exon1;Parent=MS.gene062701.t1
chr1.4 CDS 2352083 2354032 2352083 ID=cds.MS.gene062701.t1;Parent=MS.gene062701.t1
Gene Sequence

>MS.gene062701

ATGGCGGCATCACATAAAGGCAAGATTTTTATCTTCTGTTTGGTATTATTTTTATCTTTTCTTTATGTTTCTAGTGACCCTTTAAGCCCTGAATCATGTTCAATACAATCACCATCCAACGATGAATCTGTTTCTGAATCCAAAGCAAATAGTGATAATTTTAATCAACAAGTTTTGTTGAATAAGCTTGAAGAGTTAGTGAGAAATCTAAGTGATATAGTTGCAAGATTAGAATCAAAACAACCACAGCAAGAGGTTCCTAAGGTTGTTCAAGAAAAAAGTAGGTTTACTCAGATAAAGGGTGATGTTGATGATGGAAGATCAAGTGATAAGAAAGTAGTTGAAGATGTAGAATATGAGGGGAAAGCTCAAAATGGTGAGAGAGCTAAGGGAATGTCTGTGACCAAGTATACTCCTTTTTGGTCAGAGAGATTTCAATTTGCATCTGCTGTGAAATTGGATTCTGATGCAACTTGTATAAATGTTTTGCCTTTTAAGGATCATGAAGGGTTAAGTAAGTATGTGGCAGTTAGCGACGAAAAGGGAAGAGTTTATGTGTTTTTGAGAAATGGTGATGTGTTGGTTGAGTTCGATACTTTATTGGATTCACCTATTACGGCGATGGTTTCGTATACTTCTGCTTATAAGAATGAGAGCTTTGTTGTAACTGGTCATGAAAATGGGGGAATGTTGATACATAGAGTTTGGGAGGGATCGAGCGGAGAGGATTGGAGTTCGGTTTTTATGGAAAATGTCGGTAAGTTTGTGTCACCTGAAAATCACGAGAATGGTTTGGCTATAACTTTGTTGGAAGTTCATTTTGTAGGGAGGATGAAGTACATTCTATCAGCCGATACTAGTGGGAAGATTAAGGTTTTTAAGGAAAGCAGTGTGTTTTATGGTTCTGTCACTCCGAGTGCTAGGCCGTTAGTTTTCTTGAAGCAAAGGCTTATGTTTTTGACAGAAACTGGTGCAGGGTCATTGGATTTAAGGGGCATGAAAATTAGAGAATCTGAATGCGAAGGATTGAACCATTCCCTTGCTAGAGGTTATGTTTTCGATGCCACCGAACGCTCCAAGGCTTACGGTTTTACGTCAGATGGCGATTTAATTTATGTCTTGTTGCTTGGTGATGTAATGAACTTCAAATGCAGGGTTAGATACAAGAAAAAGTTTGAAATGGATGAGCCTCTTGCCTTGCAAGCAATTAAGGGATATTTGCTTATTGTTAACCCTAAAAAGGTTTTTGTGTTTAATGTTTCGTCTCCTCATTATGTGAGAATCGGGGTGCCTCGTCCGGTTTTCTCCTCAAGCATTGATGAGCTTAGATCCTCATTCCTGAATCATCCAACCCCAAGTTTGGATGACGAAGCAAGAGTGATGATACCGTTGATAGCTAGTGACCGTGAAAAGCTTGTTATTGTTGGCCTTGGAGGTGGTTATGTTGGAATGTATCATTCCAATCTACCTATTTATAAAGGTGAATTCAATACCATGCTATGGACTAGTCCTGTATTGTTCTTCGTACTTTTCCTATTCGGTGCTTGGCATTTTTTCGCCAAGAAGAAGGAAGCACTTACATCATGGGGACCAGATGATCCCTTGGCATCAGCATCTGGTGCTCCCTTGGCATCATCTAGTTCGGGTGAAAGATCTTTTGTCGACTCTTCTTCAAGAACTTCTGCCGATGTCATGGACCTTAGAAGTGGAGCTCTCAGAGGTCCACCACCACCGAGAAGGTATGGCTCTCCTACAAGGTTTCCTGCTGGAGCAGCAAGTACCTATAGACTTGGTTCTGCTGATCACAATCCTAGGCCAGCTTCGGTTGATCCCGATTTTCGAGCAGGGTCGGAGATTAAATATAGGGCATCAACTATGGATCCTCCTGGTTTCCCTAAACGAAGAGATGGCATGTTTGTAGGAAATCAAGCTGTAAATGATCGCAGTTGA

Protein sequence

>MS.gene062701.t1

MAASHKGKIFIFCLVLFLSFLYVSSDPLSPESCSIQSPSNDESVSESKANSDNFNQQVLLNKLEELVRNLSDIVARLESKQPQQEVPKVVQEKSRFTQIKGDVDDGRSSDKKVVEDVEYEGKAQNGERAKGMSVTKYTPFWSERFQFASAVKLDSDATCINVLPFKDHEGLSKYVAVSDEKGRVYVFLRNGDVLVEFDTLLDSPITAMVSYTSAYKNESFVVTGHENGGMLIHRVWEGSSGEDWSSVFMENVGKFVSPENHENGLAITLLEVHFVGRMKYILSADTSGKIKVFKESSVFYGSVTPSARPLVFLKQRLMFLTETGAGSLDLRGMKIRESECEGLNHSLARGYVFDATERSKAYGFTSDGDLIYVLLLGDVMNFKCRVRYKKKFEMDEPLALQAIKGYLLIVNPKKVFVFNVSSPHYVRIGVPRPVFSSSIDELRSSFLNHPTPSLDDEARVMIPLIASDREKLVIVGLGGGYVGMYHSNLPIYKGEFNTMLWTSPVLFFVLFLFGAWHFFAKKKEALTSWGPDDPLASASGAPLASSSSGERSFVDSSSRTSADVMDLRSGALRGPPPPRRYGSPTRFPAGAASTYRLGSADHNPRPASVDPDFRAGSEIKYRASTMDPPGFPKRRDGMFVGNQAVNDRS