Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062701.t1 | KEH40108.1 | 99.1 | 649 | 6 | 0 | 1 | 649 | 1 | 649 | 0.00E+00 | 1273.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062701.t1 | Q9FRK5 | 52.3 | 660 | 261 | 14 | 1 | 649 | 1 | 617 | 6.9e-164 | 578.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062701.t1 | A0A072VF81 | 99.1 | 649 | 6 | 0 | 1 | 649 | 1 | 649 | 0.0e+00 | 1273.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049411 | MS.gene062701 | 0.830655 | 2.60E-55 | -1.69E-46 |
MS.gene051234 | MS.gene062701 | 0.821879 | 3.19E-53 | -1.69E-46 |
MS.gene054004 | MS.gene062701 | 0.813473 | 2.51E-51 | -1.69E-46 |
MS.gene054005 | MS.gene062701 | 0.810522 | 1.11E-50 | -1.69E-46 |
MS.gene055339 | MS.gene062701 | 0.80785 | 4.13E-50 | -1.69E-46 |
MS.gene059778 | MS.gene062701 | 0.803632 | 3.18E-49 | -1.69E-46 |
MS.gene059802 | MS.gene062701 | 0.831053 | 2.08E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062701.t1 | MTR_1g022045 | 99.076 | 649 | 6 | 0 | 1 | 649 | 1 | 649 | 0.0 | 1322 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062701.t1 | AT1G75140 | 57.014 | 663 | 225 | 16 | 1 | 649 | 1 | 617 | 0.0 | 691 |
MS.gene062701.t1 | AT1G19370 | 54.795 | 657 | 237 | 16 | 1 | 649 | 1 | 605 | 0.0 | 660 |
Find 151 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGCAGGGTCATTGGATTTA+AGG | 0.156932 | 1.4:+2353053 | MS.gene062701:CDS |
TCTTGCCTTGCAAGCAATTA+AGG | 0.160564 | 1.4:+2353273 | MS.gene062701:CDS |
GCTTATTGTTAACCCTAAAA+AGG | 0.215485 | 1.4:+2353303 | MS.gene062701:CDS |
ATTTGCATCTGCTGTGAAAT+TGG | 0.223785 | 1.4:+2352520 | MS.gene062701:CDS |
AACCCTTCATGATCCTTAAA+AGG | 0.231418 | 1.4:-2352572 | None:intergenic |
TTGAATTCACCTTTATAAAT+AGG | 0.254344 | 1.4:-2353550 | None:intergenic |
GAATGTTGATACATAGAGTT+TGG | 0.278494 | 1.4:+2352768 | MS.gene062701:CDS |
CGATACTAGTGGGAAGATTA+AGG | 0.281011 | 1.4:+2352934 | MS.gene062701:CDS |
TGTAAGTGCTTCCTTCTTCT+TGG | 0.283846 | 1.4:-2353641 | None:intergenic |
ACATGCCATCTCTTCGTTTA+GGG | 0.284583 | 1.4:-2353975 | None:intergenic |
CTCCGACCCTGCTCGAAAAT+CGG | 0.286064 | 1.4:-2353914 | None:intergenic |
GTTGTAACTGGTCATGAAAA+TGG | 0.297865 | 1.4:+2352743 | MS.gene062701:CDS |
TCCAATCTACCTATTTATAA+AGG | 0.304783 | 1.4:+2353541 | MS.gene062701:CDS |
GATTGTATTGAACATGATTC+AGG | 0.304864 | 1.4:-2352170 | None:intergenic |
TTTATTGGATTCACCTATTA+CGG | 0.311308 | 1.4:+2352679 | MS.gene062701:CDS |
GAACATGATTCAGGGCTTAA+AGG | 0.316444 | 1.4:-2352161 | None:intergenic |
AAGTAGGTTTACTCAGATAA+AGG | 0.325958 | 1.4:+2352361 | MS.gene062701:CDS |
AATGAGAGCTTTGTTGTAAC+TGG | 0.327015 | 1.4:+2352731 | MS.gene062701:CDS |
AACATGCCATCTCTTCGTTT+AGG | 0.327521 | 1.4:-2353976 | None:intergenic |
TACGAAACCATCGCCGTAAT+AGG | 0.332437 | 1.4:-2352692 | None:intergenic |
ACCTTTATAAATAGGTAGAT+TGG | 0.335847 | 1.4:-2353542 | None:intergenic |
GGTTGAGTTCGATACTTTAT+TGG | 0.339185 | 1.4:+2352664 | MS.gene062701:CDS |
CTCTGAGAGCTCCACTTCTA+AGG | 0.342609 | 1.4:-2353780 | None:intergenic |
GAATCATCCAACCCCAAGTT+TGG | 0.344833 | 1.4:+2353423 | MS.gene062701:CDS |
TAAATATAGGGCATCAACTA+TGG | 0.349327 | 1.4:+2353939 | MS.gene062701:CDS |
AAAATTATCACTATTTGCTT+TGG | 0.351578 | 1.4:-2352222 | None:intergenic |
TCCCTTGGCATCATCTAGTT+CGG | 0.356192 | 1.4:+2353705 | MS.gene062701:CDS |
TGAAATCTCTCTGACCAAAA+AGG | 0.356568 | 1.4:-2352497 | None:intergenic |
CTTGCTTCGTCATCCAAACT+TGG | 0.358616 | 1.4:-2353436 | None:intergenic |
AACTTGGGGTTGGATGATTC+AGG | 0.362507 | 1.4:-2353420 | None:intergenic |
ATCAGCATCTGGTGCTCCCT+TGG | 0.379867 | 1.4:+2353690 | MS.gene062701:CDS |
CTTGCCTTGCAAGCAATTAA+GGG | 0.383135 | 1.4:+2353274 | MS.gene062701:CDS |
TCCGACCCTGCTCGAAAATC+GGG | 0.383603 | 1.4:-2353913 | None:intergenic |
CGAAGAGATGGCATGTTTGT+AGG | 0.385532 | 1.4:+2353982 | MS.gene062701:CDS |
CTCCTCATTATGTGAGAATC+GGG | 0.386713 | 1.4:+2353347 | MS.gene062701:CDS |
CTTGTTATTGTTGGCCTTGG+AGG | 0.394015 | 1.4:+2353496 | MS.gene062701:CDS |
CGTGAAAAGCTTGTTATTGT+TGG | 0.397360 | 1.4:+2353487 | MS.gene062701:CDS |
AGAAACTGGTGCAGGGTCAT+TGG | 0.398132 | 1.4:+2353045 | MS.gene062701:CDS |
CCCTTGGCATCATCTAGTTC+GGG | 0.401741 | 1.4:+2353706 | MS.gene062701:CDS |
TGCAGGGTCATTGGATTTAA+GGG | 0.401947 | 1.4:+2353054 | MS.gene062701:CDS |
TCTCCTCATTATGTGAGAAT+CGG | 0.413688 | 1.4:+2353346 | MS.gene062701:CDS |
AGTTGAAGATGTAGAATATG+AGG | 0.417788 | 1.4:+2352421 | MS.gene062701:CDS |
CAGGGTCGGAGATTAAATAT+AGG | 0.418410 | 1.4:+2353926 | MS.gene062701:CDS |
TATGAGGGGAAAGCTCAAAA+TGG | 0.424385 | 1.4:+2352437 | MS.gene062701:CDS |
TTGCTTCGTCATCCAAACTT+GGG | 0.426551 | 1.4:-2353435 | None:intergenic |
GATCCCTTGGCATCAGCATC+TGG | 0.428564 | 1.4:+2353679 | MS.gene062701:CDS |
TCAATGGCGGCATCACATAA+AGG | 0.434001 | 1.4:+2352080 | None:intergenic |
GTAGGAGAGCCATACCTTCT+CGG | 0.439682 | 1.4:-2353814 | None:intergenic |
GCTGATGCCAAGGGATCATC+TGG | 0.441468 | 1.4:-2353673 | None:intergenic |
ACCGTAAGCCTTGGAGCGTT+CGG | 0.443128 | 1.4:-2353149 | None:intergenic |
AACATGATTCAGGGCTTAAA+GGG | 0.444442 | 1.4:-2352160 | None:intergenic |
AAGCTTGTTATTGTTGGCCT+TGG | 0.452927 | 1.4:+2353493 | MS.gene062701:CDS |
GAGAATCGGGGTGCCTCGTC+CGG | 0.453539 | 1.4:+2353360 | MS.gene062701:CDS |
AGGGATCGAGCGGAGAGGAT+TGG | 0.453805 | 1.4:+2352792 | MS.gene062701:CDS |
GAGCGGAGAGGATTGGAGTT+CGG | 0.454464 | 1.4:+2352799 | MS.gene062701:CDS |
TGGTTTGGCTATAACTTTGT+TGG | 0.455300 | 1.4:+2352871 | MS.gene062701:CDS |
TTGTAACTGGTCATGAAAAT+GGG | 0.458526 | 1.4:+2352744 | MS.gene062701:CDS |
AGTAGGTTTACTCAGATAAA+GGG | 0.466339 | 1.4:+2352362 | MS.gene062701:CDS |
GCTCCAGCAGGAAACCTTGT+AGG | 0.467929 | 1.4:-2353832 | None:intergenic |
ATGTAATGAACTTCAAATGC+AGG | 0.472022 | 1.4:+2353215 | MS.gene062701:CDS |
TGTGGCAGTTAGCGACGAAA+AGG | 0.473396 | 1.4:+2352604 | MS.gene062701:CDS |
AATGTTGATACATAGAGTTT+GGG | 0.473684 | 1.4:+2352769 | MS.gene062701:CDS |
TTAATTTATGTCTTGTTGCT+TGG | 0.474510 | 1.4:+2353190 | MS.gene062701:CDS |
GTTATTGTTGGCCTTGGAGG+TGG | 0.480940 | 1.4:+2353499 | MS.gene062701:CDS |
ACCGAACGCTCCAAGGCTTA+CGG | 0.482451 | 1.4:+2353148 | MS.gene062701:CDS |
AAATCGGGATCAACCGAAGC+TGG | 0.485044 | 1.4:-2353898 | None:intergenic |
TAGGTACTTGCTGCTCCAGC+AGG | 0.488751 | 1.4:-2353844 | None:intergenic |
CCATACCTTCTCGGTGGTGG+TGG | 0.491401 | 1.4:-2353805 | None:intergenic |
AAAAGTACGAAGAACAATAC+AGG | 0.493218 | 1.4:-2353592 | None:intergenic |
GTTGAAGATGTAGAATATGA+GGG | 0.497093 | 1.4:+2352422 | MS.gene062701:CDS |
ATCAGCAGAACCAAGTCTAT+AGG | 0.499473 | 1.4:-2353863 | None:intergenic |
GGCCTTGGAGGTGGTTATGT+TGG | 0.500374 | 1.4:+2353508 | MS.gene062701:CDS |
GAGCCATACCTTCTCGGTGG+TGG | 0.500633 | 1.4:-2353808 | None:intergenic |
ATTGTATTGAACATGATTCA+GGG | 0.502180 | 1.4:-2352169 | None:intergenic |
AAGAACTTCTGCCGATGTCA+TGG | 0.502840 | 1.4:+2353756 | MS.gene062701:CDS |
TGAAAATCACGAGAATGGTT+TGG | 0.504411 | 1.4:+2352856 | MS.gene062701:CDS |
GGATCAACCGAAGCTGGCCT+AGG | 0.505610 | 1.4:-2353892 | None:intergenic |
AGAAGGAAGCACTTACATCA+TGG | 0.505670 | 1.4:+2353647 | MS.gene062701:CDS |
TTTGAGAAATGGTGATGTGT+TGG | 0.505711 | 1.4:+2352643 | MS.gene062701:CDS |
ATATCCCTTAATTGCTTGCA+AGG | 0.508373 | 1.4:-2353278 | None:intergenic |
CGATGCCACCGAACGCTCCA+AGG | 0.508984 | 1.4:+2353141 | MS.gene062701:CDS |
AGGGTCGGAGATTAAATATA+GGG | 0.509764 | 1.4:+2353927 | MS.gene062701:CDS |
TCACAATCCTAGGCCAGCTT+CGG | 0.513487 | 1.4:+2353885 | MS.gene062701:CDS |
CCACCACCACCGAGAAGGTA+TGG | 0.519438 | 1.4:+2353805 | MS.gene062701:CDS |
CTTAATCTTCCCACTAGTAT+CGG | 0.520642 | 1.4:-2352933 | None:intergenic |
GTGAATTCAATACCATGCTA+TGG | 0.523841 | 1.4:+2353563 | MS.gene062701:CDS |
GTTCTGTCACTCCGAGTGCT+AGG | 0.526531 | 1.4:+2352984 | MS.gene062701:CDS |
TGACGTAAAACCGTAAGCCT+TGG | 0.530165 | 1.4:-2353158 | None:intergenic |
TCGTCATCCAAACTTGGGGT+TGG | 0.534310 | 1.4:-2353430 | None:intergenic |
ATGGGGACCAGATGATCCCT+TGG | 0.536773 | 1.4:+2353666 | MS.gene062701:CDS |
TGCTTCGTCATCCAAACTTG+GGG | 0.537547 | 1.4:-2353434 | None:intergenic |
TCTCCTACAAGGTTTCCTGC+TGG | 0.544977 | 1.4:+2353829 | MS.gene062701:CDS |
AGCACCAGATGCTGATGCCA+AGG | 0.549033 | 1.4:-2353683 | None:intergenic |
TCACCTGAAAATCACGAGAA+TGG | 0.550569 | 1.4:+2352851 | MS.gene062701:CDS |
TCAATGCTTGAGGAGAAAAC+CGG | 0.551859 | 1.4:-2353379 | None:intergenic |
GAAGGAAGCACTTACATCAT+GGG | 0.552127 | 1.4:+2353648 | MS.gene062701:CDS |
GAAGGTATGGCTCTCCTACA+AGG | 0.552207 | 1.4:+2353818 | MS.gene062701:CDS |
ATCAAAACAACCACAGCAAG+AGG | 0.553985 | 1.4:+2352316 | MS.gene062701:CDS |
TTCAGAAACAGATTCATCGT+TGG | 0.554856 | 1.4:-2352198 | None:intergenic |
GGATTCACCTATTACGGCGA+TGG | 0.555523 | 1.4:+2352685 | MS.gene062701:CDS |
CGAAAACATAACCTCTAGCA+AGG | 0.557604 | 1.4:-2353120 | None:intergenic |
CATAACCTCTAGCAAGGGAA+TGG | 0.558567 | 1.4:-2353114 | None:intergenic |
GCATCAACTATGGATCCTCC+TGG | 0.559135 | 1.4:+2353949 | MS.gene062701:CDS |
TCAAAATGGTGAGAGAGCTA+AGG | 0.560407 | 1.4:+2352451 | MS.gene062701:CDS |
CTTGAGGAGAAAACCGGACG+AGG | 0.564181 | 1.4:-2353373 | None:intergenic |
AAAACTAACGGCCTAGCACT+CGG | 0.565802 | 1.4:-2352995 | None:intergenic |
GTTCTGCTGATCACAATCCT+AGG | 0.568302 | 1.4:+2353875 | MS.gene062701:CDS |
CAAAATGGTGAGAGAGCTAA+GGG | 0.568442 | 1.4:+2352452 | MS.gene062701:CDS |
ATAAAGGGTGATGTTGATGA+TGG | 0.570149 | 1.4:+2352377 | MS.gene062701:CDS |
GGTTGGATGATTCAGGAATG+AGG | 0.577066 | 1.4:-2353413 | None:intergenic |
ACCCCGATTCTCACATAATG+AGG | 0.578251 | 1.4:-2353349 | None:intergenic |
GTTGATACATAGAGTTTGGG+AGG | 0.579213 | 1.4:+2352772 | MS.gene062701:CDS |
GTGGCAGTTAGCGACGAAAA+GGG | 0.579574 | 1.4:+2352605 | MS.gene062701:CDS |
GAAACAGATTCATCGTTGGA+TGG | 0.583904 | 1.4:-2352194 | None:intergenic |
TGAAGGGTTAAGTAAGTATG+TGG | 0.586429 | 1.4:+2352586 | MS.gene062701:CDS |
CTTTGCTTCAAGAAAACTAA+CGG | 0.587679 | 1.4:-2353007 | None:intergenic |
TTGAACCATTCCCTTGCTAG+AGG | 0.588040 | 1.4:+2353109 | MS.gene062701:CDS |
ACCCGAACTAGATGATGCCA+AGG | 0.588300 | 1.4:-2353707 | None:intergenic |
ACCACAGCAAGAGGTTCCTA+AGG | 0.591540 | 1.4:+2352325 | MS.gene062701:CDS |
TTAATTGCTTGCAAGGCAAG+AGG | 0.592530 | 1.4:-2353271 | None:intergenic |
ACCTTAGGAACCTCTTGCTG+TGG | 0.596633 | 1.4:-2352326 | None:intergenic |
ATTCTATCAGCCGATACTAG+TGG | 0.596692 | 1.4:+2352923 | MS.gene062701:CDS |
TTCTATCAGCCGATACTAGT+GGG | 0.601289 | 1.4:+2352924 | MS.gene062701:CDS |
TCTCTTCGTTTAGGGAAACC+AGG | 0.603540 | 1.4:-2353967 | None:intergenic |
GCACCAGATGCTGATGCCAA+GGG | 0.603889 | 1.4:-2353682 | None:intergenic |
ATTAGAGAATCTGAATGCGA+AGG | 0.604471 | 1.4:+2353085 | MS.gene062701:CDS |
GGTTTCCCTAAACGAAGAGA+TGG | 0.605902 | 1.4:+2353970 | MS.gene062701:CDS |
GCAGGGTCATTGGATTTAAG+GGG | 0.607326 | 1.4:+2353055 | MS.gene062701:CDS |
GATGTCATGGACCTTAGAAG+TGG | 0.608463 | 1.4:+2353769 | MS.gene062701:CDS |
GCAGCAAGTACCTATAGACT+TGG | 0.614298 | 1.4:+2353853 | MS.gene062701:CDS |
GAGGTCCACCACCACCGAGA+AGG | 0.615042 | 1.4:+2353800 | MS.gene062701:CDS |
GTAAGCCTTGGAGCGTTCGG+TGG | 0.615723 | 1.4:-2353146 | None:intergenic |
TCTAAGCTCATCAATGCTTG+AGG | 0.624847 | 1.4:-2353389 | None:intergenic |
ACTTCTAAGGTCCATGACAT+CGG | 0.628592 | 1.4:-2353767 | None:intergenic |
AGAGTTTGGGAGGGATCGAG+CGG | 0.630495 | 1.4:+2352782 | MS.gene062701:CDS |
TTCCAACATAACCACCTCCA+AGG | 0.632050 | 1.4:-2353510 | None:intergenic |
TGTAATGAACTTCAAATGCA+GGG | 0.635592 | 1.4:+2353216 | MS.gene062701:CDS |
TCACGGTCACTAGCTATCAA+CGG | 0.636430 | 1.4:-2353469 | None:intergenic |
GAAAACATAACCTCTAGCAA+GGG | 0.636680 | 1.4:-2353119 | None:intergenic |
TTGATACATAGAGTTTGGGA+GGG | 0.638448 | 1.4:+2352773 | MS.gene062701:CDS |
TTGAAGATGTAGAATATGAG+GGG | 0.651957 | 1.4:+2352423 | MS.gene062701:CDS |
TACAGGACTAGTCCATAGCA+TGG | 0.656922 | 1.4:-2353575 | None:intergenic |
AAGGAAGCACTTACATCATG+GGG | 0.662135 | 1.4:+2353649 | MS.gene062701:CDS |
CTTAGAAGTGGAGCTCTCAG+AGG | 0.667229 | 1.4:+2353781 | MS.gene062701:CDS |
TGTAACTGGTCATGAAAATG+GGG | 0.671239 | 1.4:+2352745 | MS.gene062701:CDS |
TTGGGAGGGATCGAGCGGAG+AGG | 0.684923 | 1.4:+2352787 | MS.gene062701:CDS |
TCCTCATTATGTGAGAATCG+GGG | 0.695613 | 1.4:+2353348 | MS.gene062701:CDS |
CCCGAACTAGATGATGCCAA+GGG | 0.697441 | 1.4:-2353706 | None:intergenic |
GGAGAGCCATACCTTCTCGG+TGG | 0.704913 | 1.4:-2353811 | None:intergenic |
CTTCGTTTAGGGAAACCAGG+AGG | 0.758900 | 1.4:-2353964 | None:intergenic |
GTAACTGGTCATGAAAATGG+GGG | 0.767450 | 1.4:+2352746 | MS.gene062701:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTATCACTATTTGCTT+TGG | - | chr1.4:2352225-2352244 | None:intergenic | 20.0% |
!! | ATACAAGAAAAAGTTTGAAA+TGG | + | chr1.4:2353243-2353262 | MS.gene062701:CDS | 20.0% |
!! | TTGAATTCACCTTTATAAAT+AGG | - | chr1.4:2353553-2353572 | None:intergenic | 20.0% |
!!! | TAAACACAAAAACCTTTTTA+GGG | - | chr1.4:2353318-2353337 | None:intergenic | 20.0% |
!!! | TATAAATGTTTTGCCTTTTA+AGG | + | chr1.4:2352559-2352578 | MS.gene062701:CDS | 20.0% |
!!! | TTAAACACAAAAACCTTTTT+AGG | - | chr1.4:2353319-2353338 | None:intergenic | 20.0% |
! | AATGTTGATACATAGAGTTT+GGG | + | chr1.4:2352769-2352788 | MS.gene062701:CDS | 25.0% |
! | ACCTTTATAAATAGGTAGAT+TGG | - | chr1.4:2353545-2353564 | None:intergenic | 25.0% |
! | ATTGTATTGAACATGATTCA+GGG | - | chr1.4:2352172-2352191 | None:intergenic | 25.0% |
! | TCCAATCTACCTATTTATAA+AGG | + | chr1.4:2353541-2353560 | MS.gene062701:CDS | 25.0% |
! | TTTATTGGATTCACCTATTA+CGG | + | chr1.4:2352679-2352698 | MS.gene062701:CDS | 25.0% |
!! | CAAGATTTTTATCTTCTGTT+TGG | + | chr1.4:2352103-2352122 | MS.gene062701:CDS | 25.0% |
!! | TTAATTTATGTCTTGTTGCT+TGG | + | chr1.4:2353190-2353209 | MS.gene062701:CDS | 25.0% |
!!! | GTTTATGTGTTTTTGAGAAA+TGG | + | chr1.4:2352632-2352651 | MS.gene062701:CDS | 25.0% |
AAGTAGGTTTACTCAGATAA+AGG | + | chr1.4:2352361-2352380 | MS.gene062701:CDS | 30.0% | |
AGGTTGTTCAAGAAAAAAGT+AGG | + | chr1.4:2352345-2352364 | MS.gene062701:CDS | 30.0% | |
AGTAGGTTTACTCAGATAAA+GGG | + | chr1.4:2352362-2352381 | MS.gene062701:CDS | 30.0% | |
AGTTGAAGATGTAGAATATG+AGG | + | chr1.4:2352421-2352440 | MS.gene062701:CDS | 30.0% | |
ATGTAATGAACTTCAAATGC+AGG | + | chr1.4:2353215-2353234 | MS.gene062701:CDS | 30.0% | |
CTTTGCTTCAAGAAAACTAA+CGG | - | chr1.4:2353010-2353029 | None:intergenic | 30.0% | |
GAATGTTGATACATAGAGTT+TGG | + | chr1.4:2352768-2352787 | MS.gene062701:CDS | 30.0% | |
GATTGTATTGAACATGATTC+AGG | - | chr1.4:2352173-2352192 | None:intergenic | 30.0% | |
GCTTATTGTTAACCCTAAAA+AGG | + | chr1.4:2353303-2353322 | MS.gene062701:CDS | 30.0% | |
GTTGAAGATGTAGAATATGA+GGG | + | chr1.4:2352422-2352441 | MS.gene062701:CDS | 30.0% | |
TGTAATGAACTTCAAATGCA+GGG | + | chr1.4:2353216-2353235 | MS.gene062701:CDS | 30.0% | |
TTGAAGATGTAGAATATGAG+GGG | + | chr1.4:2352423-2352442 | MS.gene062701:CDS | 30.0% | |
TTGTAACTGGTCATGAAAAT+GGG | + | chr1.4:2352744-2352763 | MS.gene062701:CDS | 30.0% | |
! | AAAAGTACGAAGAACAATAC+AGG | - | chr1.4:2353595-2353614 | None:intergenic | 30.0% |
! | CAACAATAACAAGCTTTTCA+CGG | - | chr1.4:2353489-2353508 | None:intergenic | 30.0% |
! | TAAATATAGGGCATCAACTA+TGG | + | chr1.4:2353939-2353958 | MS.gene062701:CDS | 30.0% |
! | TCGGTTTTTATGGAAAATGT+CGG | + | chr1.4:2352818-2352837 | MS.gene062701:CDS | 30.0% |
! | TGGGAAGATTAAGGTTTTTA+AGG | + | chr1.4:2352943-2352962 | MS.gene062701:CDS | 30.0% |
! | TGTTGGAAGTTCATTTTGTA+GGG | + | chr1.4:2352888-2352907 | MS.gene062701:CDS | 30.0% |
! | TTCTTCGTACTTTTCCTATT+CGG | + | chr1.4:2353601-2353620 | MS.gene062701:CDS | 30.0% |
! | TTGTTGGAAGTTCATTTTGT+AGG | + | chr1.4:2352887-2352906 | MS.gene062701:CDS | 30.0% |
!! | CTTATGTTTTTGACAGAAAC+TGG | + | chr1.4:2353031-2353050 | MS.gene062701:CDS | 30.0% |
!!! | CTTTTTTCTTGAACAACCTT+AGG | - | chr1.4:2352344-2352363 | None:intergenic | 30.0% |
AACATGATTCAGGGCTTAAA+GGG | - | chr1.4:2352163-2352182 | None:intergenic | 35.0% | |
AACCCTTCATGATCCTTAAA+AGG | - | chr1.4:2352575-2352594 | None:intergenic | 35.0% | |
AGGGTCGGAGATTAAATATA+GGG | + | chr1.4:2353927-2353946 | MS.gene062701:CDS | 35.0% | |
ATATCCCTTAATTGCTTGCA+AGG | - | chr1.4:2353281-2353300 | None:intergenic | 35.0% | |
ATTAGAGAATCTGAATGCGA+AGG | + | chr1.4:2353085-2353104 | MS.gene062701:CDS | 35.0% | |
ATTTGCATCTGCTGTGAAAT+TGG | + | chr1.4:2352520-2352539 | MS.gene062701:CDS | 35.0% | |
CTTAATCTTCCCACTAGTAT+CGG | - | chr1.4:2352936-2352955 | None:intergenic | 35.0% | |
GAAAACATAACCTCTAGCAA+GGG | - | chr1.4:2353122-2353141 | None:intergenic | 35.0% | |
GGTTGAGTTCGATACTTTAT+TGG | + | chr1.4:2352664-2352683 | MS.gene062701:CDS | 35.0% | |
GTGAATTCAATACCATGCTA+TGG | + | chr1.4:2353563-2353582 | MS.gene062701:CDS | 35.0% | |
GTTGTAACTGGTCATGAAAA+TGG | + | chr1.4:2352743-2352762 | MS.gene062701:CDS | 35.0% | |
TCTCCTCATTATGTGAGAAT+CGG | + | chr1.4:2353346-2353365 | MS.gene062701:CDS | 35.0% | |
TGAAAATCACGAGAATGGTT+TGG | + | chr1.4:2352856-2352875 | MS.gene062701:CDS | 35.0% | |
TGAAATCTCTCTGACCAAAA+AGG | - | chr1.4:2352500-2352519 | None:intergenic | 35.0% | |
TGAAGGGTTAAGTAAGTATG+TGG | + | chr1.4:2352586-2352605 | MS.gene062701:CDS | 35.0% | |
TGTAACTGGTCATGAAAATG+GGG | + | chr1.4:2352745-2352764 | MS.gene062701:CDS | 35.0% | |
TTCAGAAACAGATTCATCGT+TGG | - | chr1.4:2352201-2352220 | None:intergenic | 35.0% | |
TTGATACATAGAGTTTGGGA+GGG | + | chr1.4:2352773-2352792 | MS.gene062701:CDS | 35.0% | |
! | AAACCATTCTCGTGATTTTC+AGG | - | chr1.4:2352857-2352876 | None:intergenic | 35.0% |
! | AAGGAAAGCAGTGTGTTTTA+TGG | + | chr1.4:2352962-2352981 | MS.gene062701:CDS | 35.0% |
! | ATAAAGGGTGATGTTGATGA+TGG | + | chr1.4:2352377-2352396 | MS.gene062701:CDS | 35.0% |
! | TGACCAAAAAGGAGTATACT+TGG | - | chr1.4:2352489-2352508 | None:intergenic | 35.0% |
! | TGACCAAGTATACTCCTTTT+TGG | + | chr1.4:2352483-2352502 | MS.gene062701:CDS | 35.0% |
! | TGGTTTGGCTATAACTTTGT+TGG | + | chr1.4:2352871-2352890 | MS.gene062701:CDS | 35.0% |
! | TTTGAGAAATGGTGATGTGT+TGG | + | chr1.4:2352643-2352662 | MS.gene062701:CDS | 35.0% |
!! | AATGAGAGCTTTGTTGTAAC+TGG | + | chr1.4:2352731-2352750 | MS.gene062701:CDS | 35.0% |
!! | CGTGAAAAGCTTGTTATTGT+TGG | + | chr1.4:2353487-2353506 | MS.gene062701:CDS | 35.0% |
!! | TGCCTTTTAAGGATCATGAA+GGG | + | chr1.4:2352570-2352589 | MS.gene062701:CDS | 35.0% |
!! | TTGCCTTTTAAGGATCATGA+AGG | + | chr1.4:2352569-2352588 | MS.gene062701:CDS | 35.0% |
!!! | CGTTAGTTTTCTTGAAGCAA+AGG | + | chr1.4:2353008-2353027 | MS.gene062701:CDS | 35.0% |
AACATGCCATCTCTTCGTTT+AGG | - | chr1.4:2353979-2353998 | None:intergenic | 40.0% | |
ACATGCCATCTCTTCGTTTA+GGG | - | chr1.4:2353978-2353997 | None:intergenic | 40.0% | |
ATCAAAACAACCACAGCAAG+AGG | + | chr1.4:2352316-2352335 | MS.gene062701:CDS | 40.0% | |
ATCAGCAGAACCAAGTCTAT+AGG | - | chr1.4:2353866-2353885 | None:intergenic | 40.0% | |
ATTCTATCAGCCGATACTAG+TGG | + | chr1.4:2352923-2352942 | MS.gene062701:CDS | 40.0% | |
CAAAATGGTGAGAGAGCTAA+GGG | + | chr1.4:2352452-2352471 | MS.gene062701:CDS | 40.0% | |
CAGGGTCGGAGATTAAATAT+AGG | + | chr1.4:2353926-2353945 | MS.gene062701:CDS | 40.0% | |
CGAAAACATAACCTCTAGCA+AGG | - | chr1.4:2353123-2353142 | None:intergenic | 40.0% | |
CGATACTAGTGGGAAGATTA+AGG | + | chr1.4:2352934-2352953 | MS.gene062701:CDS | 40.0% | |
CTCCTCATTATGTGAGAATC+GGG | + | chr1.4:2353347-2353366 | MS.gene062701:CDS | 40.0% | |
CTTGCCTTGCAAGCAATTAA+GGG | + | chr1.4:2353274-2353293 | MS.gene062701:CDS | 40.0% | |
GAAACAGATTCATCGTTGGA+TGG | - | chr1.4:2352197-2352216 | None:intergenic | 40.0% | |
GAACATGATTCAGGGCTTAA+AGG | - | chr1.4:2352164-2352183 | None:intergenic | 40.0% | |
GTAACTGGTCATGAAAATGG+GGG | + | chr1.4:2352746-2352765 | MS.gene062701:CDS | 40.0% | |
GTTGATACATAGAGTTTGGG+AGG | + | chr1.4:2352772-2352791 | MS.gene062701:CDS | 40.0% | |
TATGAGGGGAAAGCTCAAAA+TGG | + | chr1.4:2352437-2352456 | MS.gene062701:CDS | 40.0% | |
TCAAAATGGTGAGAGAGCTA+AGG | + | chr1.4:2352451-2352470 | MS.gene062701:CDS | 40.0% | |
TCAATGCTTGAGGAGAAAAC+CGG | - | chr1.4:2353382-2353401 | None:intergenic | 40.0% | |
TCACCTGAAAATCACGAGAA+TGG | + | chr1.4:2352851-2352870 | MS.gene062701:CDS | 40.0% | |
TCCTCATTATGTGAGAATCG+GGG | + | chr1.4:2353348-2353367 | MS.gene062701:CDS | 40.0% | |
TCTAAGCTCATCAATGCTTG+AGG | - | chr1.4:2353392-2353411 | None:intergenic | 40.0% | |
TCTTGCCTTGCAAGCAATTA+AGG | + | chr1.4:2353273-2353292 | MS.gene062701:CDS | 40.0% | |
TGCAGGGTCATTGGATTTAA+GGG | + | chr1.4:2353054-2353073 | MS.gene062701:CDS | 40.0% | |
TGTAAGTGCTTCCTTCTTCT+TGG | - | chr1.4:2353644-2353663 | None:intergenic | 40.0% | |
TTAATTGCTTGCAAGGCAAG+AGG | - | chr1.4:2353274-2353293 | None:intergenic | 40.0% | |
TTCTATCAGCCGATACTAGT+GGG | + | chr1.4:2352924-2352943 | MS.gene062701:CDS | 40.0% | |
TTGCTTCGTCATCCAAACTT+GGG | - | chr1.4:2353438-2353457 | None:intergenic | 40.0% | |
! | GGATTGGAGTTCGGTTTTTA+TGG | + | chr1.4:2352808-2352827 | MS.gene062701:CDS | 40.0% |
! | TGGAAGTTCATTTTGTAGGG+AGG | + | chr1.4:2352891-2352910 | MS.gene062701:CDS | 40.0% |
! | TTTTGACAGAAACTGGTGCA+GGG | + | chr1.4:2353038-2353057 | MS.gene062701:CDS | 40.0% |
! | TTTTTGACAGAAACTGGTGC+AGG | + | chr1.4:2353037-2353056 | MS.gene062701:CDS | 40.0% |
!! | AAAAATGCCAAGCACCGAAT+AGG | - | chr1.4:2353618-2353637 | None:intergenic | 40.0% |
!! | AAGCTTGTTATTGTTGGCCT+TGG | + | chr1.4:2353493-2353512 | MS.gene062701:CDS | 40.0% |
!! | AAGGAAGCACTTACATCATG+GGG | + | chr1.4:2353649-2353668 | MS.gene062701:CDS | 40.0% |
!! | ACTTCTAAGGTCCATGACAT+CGG | - | chr1.4:2353770-2353789 | None:intergenic | 40.0% |
!! | AGAAGGAAGCACTTACATCA+TGG | + | chr1.4:2353647-2353666 | MS.gene062701:CDS | 40.0% |
!! | GAAGGAAGCACTTACATCAT+GGG | + | chr1.4:2353648-2353667 | MS.gene062701:CDS | 40.0% |
!!! | GCATTTTTTCGCCAAGAAGA+AGG | + | chr1.4:2353630-2353649 | MS.gene062701:CDS | 40.0% |
!!! | TACTTTTCCTATTCGGTGCT+TGG | + | chr1.4:2353608-2353627 | MS.gene062701:CDS | 40.0% |
AAAACTAACGGCCTAGCACT+CGG | - | chr1.4:2352998-2353017 | None:intergenic | 45.0% | |
AACTTGGGGTTGGATGATTC+AGG | - | chr1.4:2353423-2353442 | None:intergenic | 45.0% | |
AAGAACTTCTGCCGATGTCA+TGG | + | chr1.4:2353756-2353775 | MS.gene062701:CDS | 45.0% | |
ACCCCGATTCTCACATAATG+AGG | - | chr1.4:2353352-2353371 | None:intergenic | 45.0% | |
CATAACCTCTAGCAAGGGAA+TGG | - | chr1.4:2353117-2353136 | None:intergenic | 45.0% | |
CGAAGAGATGGCATGTTTGT+AGG | + | chr1.4:2353982-2354001 | MS.gene062701:CDS | 45.0% | |
CTTGCTTCGTCATCCAAACT+TGG | - | chr1.4:2353439-2353458 | None:intergenic | 45.0% | |
GAATCATCCAACCCCAAGTT+TGG | + | chr1.4:2353423-2353442 | MS.gene062701:CDS | 45.0% | |
GATGTCATGGACCTTAGAAG+TGG | + | chr1.4:2353769-2353788 | MS.gene062701:CDS | 45.0% | |
GCAGCAAGTACCTATAGACT+TGG | + | chr1.4:2353853-2353872 | MS.gene062701:CDS | 45.0% | |
GCAGGGTCATTGGATTTAAG+GGG | + | chr1.4:2353055-2353074 | MS.gene062701:CDS | 45.0% | |
GGTTGGATGATTCAGGAATG+AGG | - | chr1.4:2353416-2353435 | None:intergenic | 45.0% | |
GGTTTCCCTAAACGAAGAGA+TGG | + | chr1.4:2353970-2353989 | MS.gene062701:CDS | 45.0% | |
GTGCAGGGTCATTGGATTTA+AGG | + | chr1.4:2353053-2353072 | MS.gene062701:CDS | 45.0% | |
GTTCTGCTGATCACAATCCT+AGG | + | chr1.4:2353875-2353894 | MS.gene062701:CDS | 45.0% | |
TACGAAACCATCGCCGTAAT+AGG | - | chr1.4:2352695-2352714 | None:intergenic | 45.0% | |
TCACGGTCACTAGCTATCAA+CGG | - | chr1.4:2353472-2353491 | None:intergenic | 45.0% | |
TCCCTTGGCATCATCTAGTT+CGG | + | chr1.4:2353705-2353724 | MS.gene062701:CDS | 45.0% | |
TCTCTTCGTTTAGGGAAACC+AGG | - | chr1.4:2353970-2353989 | None:intergenic | 45.0% | |
TGACGTAAAACCGTAAGCCT+TGG | - | chr1.4:2353161-2353180 | None:intergenic | 45.0% | |
TGCTTCGTCATCCAAACTTG+GGG | - | chr1.4:2353437-2353456 | None:intergenic | 45.0% | |
TTCCAACATAACCACCTCCA+AGG | - | chr1.4:2353513-2353532 | None:intergenic | 45.0% | |
TTGAACCATTCCCTTGCTAG+AGG | + | chr1.4:2353109-2353128 | MS.gene062701:CDS | 45.0% | |
! | GCTTACGGTTTTACGTCAGA+TGG | + | chr1.4:2353163-2353182 | MS.gene062701:CDS | 45.0% |
!! | CTTGTTATTGTTGGCCTTGG+AGG | + | chr1.4:2353496-2353515 | MS.gene062701:CDS | 45.0% |
!! | TACAGGACTAGTCCATAGCA+TGG | - | chr1.4:2353578-2353597 | None:intergenic | 45.0% |
!! | TTGATCCCGATTTTCGAGCA+GGG | + | chr1.4:2353908-2353927 | MS.gene062701:CDS | 45.0% |
AAATCGGGATCAACCGAAGC+TGG | - | chr1.4:2353901-2353920 | None:intergenic | 50.0% | |
ACCACAGCAAGAGGTTCCTA+AGG | + | chr1.4:2352325-2352344 | MS.gene062701:CDS | 50.0% | |
ACCCGAACTAGATGATGCCA+AGG | - | chr1.4:2353710-2353729 | None:intergenic | 50.0% | |
ACCTTAGGAACCTCTTGCTG+TGG | - | chr1.4:2352329-2352348 | None:intergenic | 50.0% | |
AGAAACTGGTGCAGGGTCAT+TGG | + | chr1.4:2353045-2353064 | MS.gene062701:CDS | 50.0% | |
CCCGAACTAGATGATGCCAA+GGG | - | chr1.4:2353709-2353728 | None:intergenic | 50.0% | |
CTTAGAAGTGGAGCTCTCAG+AGG | + | chr1.4:2353781-2353800 | MS.gene062701:CDS | 50.0% | |
CTTCGTTTAGGGAAACCAGG+AGG | - | chr1.4:2353967-2353986 | None:intergenic | 50.0% | |
GCATCAACTATGGATCCTCC+TGG | + | chr1.4:2353949-2353968 | MS.gene062701:CDS | 50.0% | |
GGATTCACCTATTACGGCGA+TGG | + | chr1.4:2352685-2352704 | MS.gene062701:CDS | 50.0% | |
GTAGGAGAGCCATACCTTCT+CGG | - | chr1.4:2353817-2353836 | None:intergenic | 50.0% | |
GTGGCAGTTAGCGACGAAAA+GGG | + | chr1.4:2352605-2352624 | MS.gene062701:CDS | 50.0% | |
TCACAATCCTAGGCCAGCTT+CGG | + | chr1.4:2353885-2353904 | MS.gene062701:CDS | 50.0% | |
TCGTCATCCAAACTTGGGGT+TGG | - | chr1.4:2353433-2353452 | None:intergenic | 50.0% | |
TCTCCTACAAGGTTTCCTGC+TGG | + | chr1.4:2353829-2353848 | MS.gene062701:CDS | 50.0% | |
TGTGGCAGTTAGCGACGAAA+AGG | + | chr1.4:2352604-2352623 | MS.gene062701:CDS | 50.0% | |
! | CCCTTGGCATCATCTAGTTC+GGG | + | chr1.4:2353706-2353725 | MS.gene062701:CDS | 50.0% |
! | CTCTGAGAGCTCCACTTCTA+AGG | - | chr1.4:2353783-2353802 | None:intergenic | 50.0% |
! | GAAGGTATGGCTCTCCTACA+AGG | + | chr1.4:2353818-2353837 | MS.gene062701:CDS | 50.0% |
!! | GTTATTGTTGGCCTTGGAGG+TGG | + | chr1.4:2353499-2353518 | MS.gene062701:CDS | 50.0% |
!! | GTTGATCCCGATTTTCGAGC+AGG | + | chr1.4:2353907-2353926 | MS.gene062701:CDS | 50.0% |
ACCGAACGCTCCAAGGCTTA+CGG | + | chr1.4:2353148-2353167 | MS.gene062701:CDS | 55.0% | |
AGAGTTTGGGAGGGATCGAG+CGG | + | chr1.4:2352782-2352801 | MS.gene062701:CDS | 55.0% | |
AGCACCAGATGCTGATGCCA+AGG | - | chr1.4:2353686-2353705 | None:intergenic | 55.0% | |
ATCAGCATCTGGTGCTCCCT+TGG | + | chr1.4:2353690-2353709 | MS.gene062701:CDS | 55.0% | |
ATGGGGACCAGATGATCCCT+TGG | + | chr1.4:2353666-2353685 | MS.gene062701:CDS | 55.0% | |
CTCCGACCCTGCTCGAAAAT+CGG | - | chr1.4:2353917-2353936 | None:intergenic | 55.0% | |
CTTGAGGAGAAAACCGGACG+AGG | - | chr1.4:2353376-2353395 | None:intergenic | 55.0% | |
GAGCGGAGAGGATTGGAGTT+CGG | + | chr1.4:2352799-2352818 | MS.gene062701:CDS | 55.0% | |
GATCCCTTGGCATCAGCATC+TGG | + | chr1.4:2353679-2353698 | MS.gene062701:CDS | 55.0% | |
GCACCAGATGCTGATGCCAA+GGG | - | chr1.4:2353685-2353704 | None:intergenic | 55.0% | |
GCTCCAGCAGGAAACCTTGT+AGG | - | chr1.4:2353835-2353854 | None:intergenic | 55.0% | |
GCTGATGCCAAGGGATCATC+TGG | - | chr1.4:2353676-2353695 | None:intergenic | 55.0% | |
GGCCTTGGAGGTGGTTATGT+TGG | + | chr1.4:2353508-2353527 | MS.gene062701:CDS | 55.0% | |
GTTCTGTCACTCCGAGTGCT+AGG | + | chr1.4:2352984-2353003 | MS.gene062701:CDS | 55.0% | |
TCCGACCCTGCTCGAAAATC+GGG | - | chr1.4:2353916-2353935 | None:intergenic | 55.0% | |
! | ACCGTAAGCCTTGGAGCGTT+CGG | - | chr1.4:2353152-2353171 | None:intergenic | 55.0% |
! | TAGGTACTTGCTGCTCCAGC+AGG | - | chr1.4:2353847-2353866 | None:intergenic | 55.0% |
!! | TCCCGATTTTCGAGCAGGGT+CGG | + | chr1.4:2353912-2353931 | MS.gene062701:CDS | 55.0% |
AGGGATCGAGCGGAGAGGAT+TGG | + | chr1.4:2352792-2352811 | MS.gene062701:CDS | 60.0% | |
CCACCACCACCGAGAAGGTA+TGG | + | chr1.4:2353805-2353824 | MS.gene062701:CDS | 60.0% | |
GAGCCATACCTTCTCGGTGG+TGG | - | chr1.4:2353811-2353830 | None:intergenic | 60.0% | |
GGAGAGCCATACCTTCTCGG+TGG | - | chr1.4:2353814-2353833 | None:intergenic | 60.0% | |
! | CCATACCTTCTCGGTGGTGG+TGG | - | chr1.4:2353808-2353827 | None:intergenic | 60.0% |
! | GGATCAACCGAAGCTGGCCT+AGG | - | chr1.4:2353895-2353914 | None:intergenic | 60.0% |
! | GTAAGCCTTGGAGCGTTCGG+TGG | - | chr1.4:2353149-2353168 | None:intergenic | 60.0% |
CGATGCCACCGAACGCTCCA+AGG | + | chr1.4:2353141-2353160 | MS.gene062701:CDS | 65.0% | |
GAGGTCCACCACCACCGAGA+AGG | + | chr1.4:2353800-2353819 | MS.gene062701:CDS | 65.0% | |
TTGGGAGGGATCGAGCGGAG+AGG | + | chr1.4:2352787-2352806 | MS.gene062701:CDS | 65.0% | |
! | GAGAATCGGGGTGCCTCGTC+CGG | + | chr1.4:2353360-2353379 | MS.gene062701:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 2352083 | 2354032 | 2352083 | ID=MS.gene062701 |
chr1.4 | mRNA | 2352083 | 2354032 | 2352083 | ID=MS.gene062701.t1;Parent=MS.gene062701 |
chr1.4 | exon | 2352083 | 2354032 | 2352083 | ID=MS.gene062701.t1.exon1;Parent=MS.gene062701.t1 |
chr1.4 | CDS | 2352083 | 2354032 | 2352083 | ID=cds.MS.gene062701.t1;Parent=MS.gene062701.t1 |
Gene Sequence |
Protein sequence |